Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832680 | RHN53618.1 | 61.468 | 327 | 80 | 8 | 1 | 281 | 1 | 327 | 4.68e-119 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832680 | sp|Q6R032|MB3R5_ARATH | 46.667 | 75 | 37 | 1 | 318 | 389 | 132 | 206 | 1.97e-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832680 | A0A396HM11 | 61.468 | 327 | 80 | 8 | 1 | 281 | 1 | 327 | 2.24e-119 | 362 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0832680 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832680 | MtrunA17_Chr5g0397791 | 61.468 | 327 | 80 | 8 | 1 | 281 | 1 | 327 | 4.31e-123 | 362 |
| Msa0832680 | MtrunA17_Chr5g0397761 | 52.841 | 352 | 95 | 9 | 1 | 281 | 1 | 352 | 5.68e-104 | 316 |
| Msa0832680 | MtrunA17_Chr5g0397741 | 53.239 | 355 | 91 | 10 | 1 | 281 | 1 | 354 | 1.83e-102 | 313 |
| Msa0832680 | MtrunA17_Chr5g0405331 | 50.737 | 339 | 104 | 8 | 1 | 276 | 1 | 339 | 3.89e-97 | 299 |
| Msa0832680 | MtrunA17_Chr4g0012621 | 51.220 | 328 | 96 | 10 | 1 | 270 | 1 | 322 | 1.15e-95 | 294 |
| Msa0832680 | MtrunA17_Chr5g0406011 | 47.922 | 361 | 120 | 11 | 1 | 300 | 1 | 354 | 3.57e-91 | 283 |
| Msa0832680 | MtrunA17_Chr5g0405321 | 44.258 | 418 | 129 | 14 | 1 | 320 | 1 | 412 | 2.24e-89 | 276 |
| Msa0832680 | MtrunA17_Chr6g0468071 | 50.617 | 324 | 100 | 11 | 1 | 269 | 1 | 319 | 5.52e-87 | 270 |
| Msa0832680 | MtrunA17_Chr5g0405441 | 45.170 | 352 | 134 | 13 | 1 | 307 | 1 | 338 | 1.91e-76 | 244 |
| Msa0832680 | MtrunA17_Chr7g0275461 | 47.170 | 265 | 88 | 7 | 87 | 300 | 1 | 264 | 4.85e-68 | 217 |
| Msa0832680 | MtrunA17_Chr5g0405431 | 46.053 | 304 | 101 | 12 | 58 | 300 | 1 | 302 | 6.40e-66 | 213 |
| Msa0832680 | MtrunA17_Chr5g0395761 | 51.046 | 239 | 66 | 6 | 83 | 271 | 10 | 247 | 1.30e-65 | 211 |
| Msa0832680 | MtrunA17_Chr5g0409701 | 45.033 | 302 | 112 | 13 | 1 | 264 | 12 | 297 | 3.56e-59 | 199 |
| Msa0832680 | MtrunA17_Chr5g0409661 | 44.702 | 302 | 113 | 13 | 1 | 264 | 12 | 297 | 1.26e-58 | 198 |
| Msa0832680 | MtrunA17_Chr5g0405341 | 47.388 | 268 | 89 | 13 | 1 | 217 | 10 | 276 | 1.83e-56 | 187 |
| Msa0832680 | MtrunA17_Chr6g0471731 | 42.900 | 331 | 124 | 14 | 1 | 303 | 1 | 294 | 8.12e-56 | 188 |
| Msa0832680 | MtrunA17_Chr5g0397851 | 73.077 | 104 | 19 | 2 | 1 | 95 | 1 | 104 | 2.86e-44 | 149 |
| Msa0832680 | MtrunA17_Chr7g0256991 | 66.667 | 96 | 25 | 2 | 183 | 272 | 17 | 111 | 5.37e-36 | 132 |
| Msa0832680 | MtrunA17_Chr5g0405461 | 41.772 | 158 | 67 | 6 | 123 | 271 | 31 | 172 | 1.38e-24 | 103 |
| Msa0832680 | MtrunA17_Chr5g0405911 | 61.538 | 78 | 23 | 2 | 208 | 280 | 17 | 92 | 1.55e-24 | 98.6 |
| Msa0832680 | MtrunA17_Chr5g0397841 | 52.174 | 138 | 38 | 5 | 297 | 408 | 93 | 228 | 1.56e-23 | 102 |
| Msa0832680 | MtrunA17_Chr7g0257001 | 38.028 | 142 | 49 | 4 | 58 | 160 | 1 | 142 | 5.97e-19 | 83.2 |
| Msa0832680 | MtrunA17_Chr3g0082421 | 29.388 | 245 | 127 | 11 | 25 | 245 | 21 | 243 | 4.26e-15 | 76.3 |
| Msa0832680 | MtrunA17_Chr5g0432411 | 42.697 | 89 | 40 | 2 | 1 | 78 | 44 | 132 | 2.33e-14 | 70.5 |
| Msa0832680 | MtrunA17_Chr3g0104401 | 41.176 | 102 | 45 | 3 | 1 | 87 | 54 | 155 | 5.35e-14 | 69.7 |
| Msa0832680 | MtrunA17_Chr3g0090591 | 27.165 | 254 | 135 | 9 | 29 | 251 | 27 | 261 | 6.83e-14 | 72.8 |
| Msa0832680 | MtrunA17_Chr4g0027011 | 26.073 | 303 | 165 | 12 | 34 | 302 | 30 | 307 | 2.20e-13 | 71.2 |
| Msa0832680 | MtrunA17_Chr7g0238631 | 64.583 | 48 | 17 | 0 | 318 | 365 | 118 | 165 | 2.24e-13 | 72.0 |
| Msa0832680 | MtrunA17_Chr3g0082441 | 29.200 | 250 | 116 | 15 | 25 | 243 | 21 | 240 | 7.08e-13 | 69.7 |
| Msa0832680 | MtrunA17_Chr3g0078421 | 24.620 | 329 | 183 | 15 | 2 | 302 | 10 | 301 | 2.64e-12 | 67.8 |
| Msa0832680 | MtrunA17_Chr1g0157731 | 60.417 | 48 | 19 | 0 | 318 | 365 | 96 | 143 | 3.67e-12 | 68.6 |
| Msa0832680 | MtrunA17_Chr7g0214991 | 25.191 | 262 | 140 | 8 | 25 | 251 | 25 | 265 | 7.37e-12 | 66.6 |
| Msa0832680 | MtrunA17_Chr3g0081901 | 30.435 | 207 | 110 | 7 | 33 | 216 | 43 | 238 | 1.28e-11 | 65.9 |
| Msa0832680 | MtrunA17_Chr3g0139671 | 62.222 | 45 | 17 | 0 | 321 | 365 | 93 | 137 | 1.39e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832680 | AT5G02320.3 | 46.667 | 75 | 37 | 1 | 318 | 389 | 72 | 146 | 1.71e-13 | 72.4 |
| Msa0832680 | AT5G02320.1 | 46.667 | 75 | 37 | 1 | 318 | 389 | 132 | 206 | 2.00e-13 | 72.4 |
| Msa0832680 | AT5G02320.2 | 46.667 | 75 | 37 | 1 | 318 | 389 | 132 | 206 | 2.00e-13 | 72.4 |
| Msa0832680 | AT3G09370.2 | 38.835 | 103 | 49 | 1 | 279 | 367 | 87 | 189 | 2.40e-12 | 68.9 |
| Msa0832680 | AT3G09370.1 | 38.835 | 103 | 49 | 1 | 279 | 367 | 82 | 184 | 2.47e-12 | 68.9 |
| Msa0832680 | AT3G09370.3 | 39.796 | 98 | 45 | 1 | 282 | 365 | 98 | 195 | 3.90e-12 | 68.2 |
| Msa0832680 | AT5G11510.3 | 58.333 | 48 | 20 | 0 | 318 | 365 | 86 | 133 | 1.35e-11 | 67.0 |
| Msa0832680 | AT5G11510.1 | 58.333 | 48 | 20 | 0 | 318 | 365 | 86 | 133 | 1.35e-11 | 67.0 |
| Msa0832680 | AT5G11510.4 | 58.333 | 48 | 20 | 0 | 318 | 365 | 86 | 133 | 1.35e-11 | 67.0 |
| Msa0832680 | AT5G11510.2 | 58.333 | 48 | 20 | 0 | 318 | 365 | 86 | 133 | 1.42e-11 | 67.0 |
| Msa0832680 | AT5G11510.5 | 58.333 | 48 | 20 | 0 | 318 | 365 | 86 | 133 | 1.46e-11 | 67.0 |
| Msa0832680 | AT4G18770.1 | 62.222 | 45 | 17 | 0 | 321 | 365 | 225 | 269 | 2.07e-11 | 65.9 |
Find 75 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTTACTGCCAAATATT+TGG | 0.169386 | 5_4:-5785234 | None:intergenic |
| GCTCACTATCACCAAATATT+TGG | 0.209059 | 5_4:+5785223 | Msa0832680:CDS |
| TCGTGGTGCCAAATCATATT+TGG | 0.229919 | 5_4:+5782101 | Msa0832680:CDS |
| ATGTTAAACGGACCAATTAT+TGG | 0.236785 | 5_4:+5782397 | Msa0832680:CDS |
| TTGCTTTAATGCTGCATCTT+TGG | 0.269555 | 5_4:-5781783 | None:intergenic |
| GGGAAGTTGAAGGAGAATTT+TGG | 0.277599 | 5_4:-5781857 | None:intergenic |
| AAATCATATTTGGAGATAAA+TGG | 0.287126 | 5_4:+5782111 | Msa0832680:CDS |
| ATTTATCTCCAAATATGATT+TGG | 0.318956 | 5_4:-5782109 | None:intergenic |
| ACGCTCAAACACCCAATAAT+TGG | 0.343703 | 5_4:-5782409 | None:intergenic |
| CTTATGAACTCCCTCGTTGC+AGG | 0.346847 | 5_4:-5782255 | None:intergenic |
| CCTACTCCTCCACATGTGTT+TGG | 0.347033 | 5_4:+5782621 | Msa0832680:CDS |
| TGTTAAACGGACCAATTATT+GGG | 0.361644 | 5_4:+5782398 | Msa0832680:CDS |
| AATCTAGTAGACATGTTATC+AGG | 0.365229 | 5_4:-5782663 | None:intergenic |
| AACCAGTCTTTAGTAGCTTC+AGG | 0.369605 | 5_4:-5782282 | None:intergenic |
| GATCCTGAAAAGTTTGAGTT+TGG | 0.371310 | 5_4:+5782033 | Msa0832680:CDS |
| TTATTGGGTGTTTGAGCGTT+TGG | 0.373185 | 5_4:+5782413 | Msa0832680:CDS |
| TTTCGAAAGATGAGACTAAC+TGG | 0.390674 | 5_4:-5781973 | None:intergenic |
| GTGTTAACGGTGCACTTCAT+TGG | 0.401572 | 5_4:+5782526 | Msa0832680:CDS |
| TGATAACATGTCTACTAGAT+TGG | 0.407812 | 5_4:+5782665 | Msa0832680:CDS |
| ATGTATCCGACATGTGTTAA+CGG | 0.419228 | 5_4:+5782513 | Msa0832680:CDS |
| GATGGAAGATTATCAAAGTA+AGG | 0.426538 | 5_4:-5781823 | None:intergenic |
| AAATCCATGCCAGGTCGTAT+TGG | 0.436153 | 5_4:+5784804 | Msa0832680:CDS |
| ACATTGAAGCTTCCTCTTCG+TGG | 0.441311 | 5_4:+5782084 | Msa0832680:intron |
| TTGGTGATAGTGAGCAAGTA+TGG | 0.453992 | 5_4:-5785215 | None:intergenic |
| CTTTGGATAGTAGCCCTTGG+TGG | 0.472713 | 5_4:-5781766 | None:intergenic |
| CTTTCCAATACGACCTGGCA+TGG | 0.479326 | 5_4:-5784808 | None:intergenic |
| GAGACTTAATGGGAAGTTGA+AGG | 0.481488 | 5_4:-5781867 | None:intergenic |
| TTTGGATAGTAGCCCTTGGT+GGG | 0.494089 | 5_4:-5781765 | None:intergenic |
| TGCACCTTTGGCTGTAACCG+AGG | 0.496249 | 5_4:-5782312 | None:intergenic |
| TAGTATTGTGAATTCTTGCA+TGG | 0.499787 | 5_4:+5782179 | Msa0832680:CDS |
| CATCTTTGGATAGTAGCCCT+TGG | 0.500894 | 5_4:-5781769 | None:intergenic |
| GATCGCACTCAAGAAGGTAT+AGG | 0.504547 | 5_4:-5782014 | None:intergenic |
| AGTCGGCAGCATCACCTACT+TGG | 0.508654 | 5_4:+5785801 | Msa0832680:CDS |
| ACTTCAACATTTCTCCATGA+TGG | 0.515183 | 5_4:-5782462 | None:intergenic |
| CATATGAGAAGAGACTTAAT+GGG | 0.523652 | 5_4:-5781877 | None:intergenic |
| AGTATTGTGAATTCTTGCAT+GGG | 0.525304 | 5_4:+5782180 | Msa0832680:CDS |
| CCAAACACATGTGGAGGAGT+AGG | 0.527500 | 5_4:-5782621 | None:intergenic |
| TTTATTGCAAAATCCATGCC+AGG | 0.530249 | 5_4:+5784795 | Msa0832680:CDS |
| AATATAAGGTGATAAGATTG+TGG | 0.530533 | 5_4:+5782367 | Msa0832680:intron |
| GGGTGCATGGACGGAAGTGG+AGG | 0.531882 | 5_4:+5785189 | Msa0832680:CDS |
| AAAGGGTGCATGGACGGAAG+TGG | 0.535060 | 5_4:+5785186 | Msa0832680:CDS |
| GTAGATGTGTGTGCAAAACT+TGG | 0.535140 | 5_4:+5781899 | Msa0832680:intron |
| GTCCTTGAGATACATACGGT+TGG | 0.536525 | 5_4:+5782435 | Msa0832680:CDS |
| TTTCAGGATCGCACTCAAGA+AGG | 0.539810 | 5_4:-5782020 | None:intergenic |
| CTTCATTGGATCATATATGA+AGG | 0.550871 | 5_4:+5782540 | Msa0832680:CDS |
| TTATGAACTCCCTCGTTGCA+GGG | 0.551265 | 5_4:-5782254 | None:intergenic |
| CATTGCTTTCCAATACGACC+TGG | 0.555175 | 5_4:-5784813 | None:intergenic |
| AATTGCAATTTAGCAAAATG+TGG | 0.556040 | 5_4:-5781940 | None:intergenic |
| GACGCCTCGGTTACAGCCAA+AGG | 0.559041 | 5_4:+5782308 | Msa0832680:CDS |
| TTTGGTCCTTGAGATACATA+CGG | 0.573556 | 5_4:+5782431 | Msa0832680:CDS |
| ATGGAAGATTATCAAAGTAA+GGG | 0.576784 | 5_4:-5781822 | None:intergenic |
| TTCCTGAAGCTACTAAAGAC+TGG | 0.577842 | 5_4:+5782280 | Msa0832680:CDS |
| GATCTGCAACCCTGCAACGA+GGG | 0.583384 | 5_4:+5782245 | Msa0832680:CDS |
| GGTGCATGGACGGAAGTGGA+GGG | 0.592708 | 5_4:+5785190 | Msa0832680:CDS |
| TTGAGGTGTTGAAATACTCA+AGG | 0.594345 | 5_4:+5783024 | Msa0832680:CDS |
| ATACGGTTGGAACACCATCA+TGG | 0.594472 | 5_4:+5782448 | Msa0832680:CDS |
| TCACTGAAAGATGTTGTGAA+AGG | 0.596652 | 5_4:+5782993 | Msa0832680:CDS |
| TCATACAATTTGTTGAAACA+AGG | 0.599201 | 5_4:-5783707 | None:intergenic |
| TTCCAACCGTATGTATCTCA+AGG | 0.601275 | 5_4:-5782437 | None:intergenic |
| ATCATGGAGAAATGTTGAAG+TGG | 0.602127 | 5_4:+5782464 | Msa0832680:CDS |
| TCATGATTTCCAAACACATG+TGG | 0.612663 | 5_4:-5782630 | None:intergenic |
| ACTAAACTTGTTATGATCTG+TGG | 0.619883 | 5_4:-5782160 | None:intergenic |
| AAGACTGGTTAAAGACGCCT+CGG | 0.621134 | 5_4:+5782295 | Msa0832680:CDS |
| TGAAATACTCAAGGTTCGAA+AGG | 0.622383 | 5_4:+5783033 | Msa0832680:CDS |
| TGATTTCCAAACACATGTGG+AGG | 0.625481 | 5_4:-5782627 | None:intergenic |
| ATCACCTACTTGGTGTGACA+TGG | 0.630468 | 5_4:+5785811 | Msa0832680:CDS |
| TTGGAAAGCAATGTCAAGAG+AGG | 0.637550 | 5_4:+5784823 | Msa0832680:CDS |
| GGGTTCAATTACCCCACCAA+GGG | 0.644896 | 5_4:+5781753 | Msa0832680:CDS |
| TATGATTTGGCACCACGAAG+AGG | 0.651523 | 5_4:-5782096 | None:intergenic |
| ACATCCATGTCACACCAAGT+AGG | 0.651882 | 5_4:-5785815 | None:intergenic |
| AGGGTTCAATTACCCCACCA+AGG | 0.668158 | 5_4:+5781752 | Msa0832680:CDS |
| AGTGCACCGTTAACACATGT+CGG | 0.670789 | 5_4:-5782519 | None:intergenic |
| TTGGATAGTAGCCCTTGGTG+GGG | 0.684403 | 5_4:-5781764 | None:intergenic |
| TGTGAAAGGAAACGATGTTG+AGG | 0.702427 | 5_4:+5783007 | Msa0832680:CDS |
| TGATCTGCAACCCTGCAACG+AGG | 0.706659 | 5_4:+5782244 | Msa0832680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATGTAAAAATACATT+TGG | + | chr5_4:5783376-5783395 | Msa0832680:intron | 10.0% |
| !! | ATTAATGTAAAAATACATTT+GGG | + | chr5_4:5783377-5783396 | Msa0832680:intron | 10.0% |
| !!! | TGATGTTTTTTTTTTTTTTT+TGG | + | chr5_4:5784123-5784142 | Msa0832680:intron | 10.0% |
| !!! | AATTTTGTTTTCATTTTTGT+AGG | + | chr5_4:5783665-5783684 | Msa0832680:intron | 15.0% |
| !!! | TTTTTTTTTGGTAAACTTTA+AGG | + | chr5_4:5784135-5784154 | Msa0832680:intron | 15.0% |
| !! | GACAAATTAATAAAAATAGA+TGG | - | chr5_4:5784328-5784347 | None:intergenic | 15.0% |
| !! | AATGCTATAAAAAAAATCAT+TGG | + | chr5_4:5785759-5785778 | Msa0832680:intron | 15.0% |
| !! | ATTTATCTCCAAATATGATT+TGG | - | chr5_4:5782112-5782131 | None:intergenic | 20.0% |
| !! | AAATCATATTTGGAGATAAA+TGG | + | chr5_4:5782111-5782130 | Msa0832680:CDS | 20.0% |
| !!! | ACCTTATATTCATTAGTTTT+GGG | - | chr5_4:5782357-5782376 | None:intergenic | 20.0% |
| !! | ATTTAACATGTCTATTAGAT+TGG | + | chr5_4:5782689-5782708 | Msa0832680:intron | 20.0% |
| !! | TTTAACATGTCTATTAGATT+GGG | + | chr5_4:5782690-5782709 | Msa0832680:intron | 20.0% |
| !! | ATGAATAAGTGTTTATATGT+GGG | - | chr5_4:5783447-5783466 | None:intergenic | 20.0% |
| !! | TATGAATAAGTGTTTATATG+TGG | - | chr5_4:5783448-5783467 | None:intergenic | 20.0% |
| !! | AAAACAAAATTACAGAACAA+TGG | - | chr5_4:5783656-5783675 | None:intergenic | 20.0% |
| !! | CTTAAAATTGTAATAAGCAT+GGG | - | chr5_4:5783856-5783875 | None:intergenic | 20.0% |
| !!! | TGTTCATTAGTCATTTTTTA+TGG | + | chr5_4:5784162-5784181 | Msa0832680:intron | 20.0% |
| !! | AGACAATGATTATTTCATTA+TGG | + | chr5_4:5784221-5784240 | Msa0832680:intron | 20.0% |
| !!! | CATAAAAGAAGATAGTTTTT+CGG | - | chr5_4:5784417-5784436 | None:intergenic | 20.0% |
| !! | AAGTAAAAAAAGGATATGAT+AGG | + | chr5_4:5784479-5784498 | Msa0832680:intron | 20.0% |
| !! | TTAACTACTAATATTTATGC+AGG | - | chr5_4:5785351-5785370 | None:intergenic | 20.0% |
| !! | AAAATGACAACTTAATTGAA+TGG | + | chr5_4:5785380-5785399 | Msa0832680:intron | 20.0% |
| !! | AAAAATGATCATTTAGTAAC+TGG | - | chr5_4:5785506-5785525 | None:intergenic | 20.0% |
| !!! | TGCTTTTTTTCTAATAAAGT+TGG | + | chr5_4:5785854-5785873 | Msa0832680:CDS | 20.0% |
| ! | ATGGAAGATTATCAAAGTAA+GGG | - | chr5_4:5781825-5781844 | None:intergenic | 25.0% |
| ! | AATTGCAATTTAGCAAAATG+TGG | - | chr5_4:5781943-5781962 | None:intergenic | 25.0% |
| !!! | TATATTCATTAGTTTTGGGT+TGG | - | chr5_4:5782353-5782372 | None:intergenic | 25.0% |
| ! | ACCCAAAACTAATGAATATA+AGG | + | chr5_4:5782353-5782372 | Msa0832680:intron | 25.0% |
| !!! | CACCTTATATTCATTAGTTT+TGG | - | chr5_4:5782358-5782377 | None:intergenic | 25.0% |
| ! | AATATAAGGTGATAAGATTG+TGG | + | chr5_4:5782367-5782386 | Msa0832680:intron | 25.0% |
| ! | TGTGGAAAAAACATGTTAAA+CGG | + | chr5_4:5782385-5782404 | Msa0832680:CDS | 25.0% |
| ! | ACTCTAAACAAGAGAATTAT+GGG | + | chr5_4:5782901-5782920 | Msa0832680:intron | 25.0% |
| !!! | TCAAAGTTTTTCGAATTCAT+TGG | + | chr5_4:5782925-5782944 | Msa0832680:intron | 25.0% |
| !!! | ATGTTGCTGATTTTCATTTT+TGG | + | chr5_4:5783162-5783181 | Msa0832680:intron | 25.0% |
| !!! | TTCATTTTTGGTGTTCTATT+TGG | + | chr5_4:5783174-5783193 | Msa0832680:intron | 25.0% |
| ! | TGAATAAGTGTTTATATGTG+GGG | - | chr5_4:5783446-5783465 | None:intergenic | 25.0% |
| !!! | GTTGTTATAATGTCGATTTT+TGG | + | chr5_4:5783546-5783565 | Msa0832680:intron | 25.0% |
| ! | TATTTACATCTCAACAACTA+AGG | - | chr5_4:5783577-5783596 | None:intergenic | 25.0% |
| !! | AGATAAAACTGCAATTTGTT+GGG | - | chr5_4:5783621-5783640 | None:intergenic | 25.0% |
| ! | TAGATAAAACTGCAATTTGT+TGG | - | chr5_4:5783622-5783641 | None:intergenic | 25.0% |
| !!! | TCATACAATTTGTTGAAACA+AGG | - | chr5_4:5783710-5783729 | None:intergenic | 25.0% |
| ! | TCAACAAATTGTATGATACT+TGG | + | chr5_4:5783714-5783733 | Msa0832680:intron | 25.0% |
| ! | AGAAACAAACATACTCTTAT+TGG | - | chr5_4:5783818-5783837 | None:intergenic | 25.0% |
| ! | GCTTAAAATTGTAATAAGCA+TGG | - | chr5_4:5783857-5783876 | None:intergenic | 25.0% |
| !! | ACAATTTTAAGCAGATTACT+TGG | + | chr5_4:5783865-5783884 | Msa0832680:intron | 25.0% |
| !! | CAATTTTAAGCAGATTACTT+GGG | + | chr5_4:5783866-5783885 | Msa0832680:intron | 25.0% |
| ! | AAAGAATACAACTGATAAGT+AGG | + | chr5_4:5784022-5784041 | Msa0832680:intron | 25.0% |
| !!! | TTTGCTTGTTTTGAATTTCT+AGG | + | chr5_4:5784093-5784112 | Msa0832680:intron | 25.0% |
| ! | GAAAAACAATTTAGGCAAAT+GGG | - | chr5_4:5784278-5784297 | None:intergenic | 25.0% |
| ! | TGAAAAACAATTTAGGCAAA+TGG | - | chr5_4:5784279-5784298 | None:intergenic | 25.0% |
| !!! | TTTTATTAATTTGTCTCGTG+TGG | + | chr5_4:5784333-5784352 | Msa0832680:intron | 25.0% |
| !!! | TTTATTAATTTGTCTCGTGT+GGG | + | chr5_4:5784334-5784353 | Msa0832680:intron | 25.0% |
| !! | CGAAAAACTATCTTCTTTTA+TGG | + | chr5_4:5784415-5784434 | Msa0832680:intron | 25.0% |
| !! | ATTTAGTTTAATCCTTCAAG+TGG | + | chr5_4:5784446-5784465 | Msa0832680:intron | 25.0% |
| !! | TTTAGTTTAATCCTTCAAGT+GGG | + | chr5_4:5784447-5784466 | Msa0832680:intron | 25.0% |
| ! | AAATATGTGCACAAAATACA+TGG | - | chr5_4:5784554-5784573 | None:intergenic | 25.0% |
| !!! | GAGAACATAAGTTCATTTTT+TGG | + | chr5_4:5784619-5784638 | Msa0832680:intron | 25.0% |
| !!! | ACATAAGTTCATTTTTTGGT+TGG | + | chr5_4:5784623-5784642 | Msa0832680:intron | 25.0% |
| !!! | CTTTTTCACTAGTTCAAATA+GGG | - | chr5_4:5784754-5784773 | None:intergenic | 25.0% |
| !!! | ACTTTTTCACTAGTTCAAAT+AGG | - | chr5_4:5784755-5784774 | None:intergenic | 25.0% |
| ! | TTTGAACTAGTGAAAAAGTA+TGG | + | chr5_4:5784756-5784775 | Msa0832680:CDS | 25.0% |
| ! | TTACCTAGTAGTTTATATTC+TGG | - | chr5_4:5785126-5785145 | None:intergenic | 25.0% |
| ! | TTGATCCTGCAATAAAAAAA+GGG | + | chr5_4:5785169-5785188 | Msa0832680:CDS | 25.0% |
| ! | ACAATTTACTGCCAAATATT+TGG | - | chr5_4:5785237-5785256 | None:intergenic | 25.0% |
| ! | TAAATTGTCAGAAATTGCAA+GGG | + | chr5_4:5785249-5785268 | Msa0832680:intron | 25.0% |
| ! | CTTAACATAAAGGTAAACTT+AGG | - | chr5_4:5785423-5785442 | None:intergenic | 25.0% |
| ! | TGTGATAATTCTGTATCATT+TGG | + | chr5_4:5785720-5785739 | Msa0832680:intron | 25.0% |
| ! | GTGATAATTCTGTATCATTT+GGG | + | chr5_4:5785721-5785740 | Msa0832680:intron | 25.0% |
| ! | ATTAGAAAAAAAGCAGAAAC+TGG | - | chr5_4:5785849-5785868 | None:intergenic | 25.0% |
| GATGGAAGATTATCAAAGTA+AGG | - | chr5_4:5781826-5781845 | None:intergenic | 30.0% | |
| !! | ATTTTGGTAGTTAAGTGAGA+TGG | - | chr5_4:5781844-5781863 | None:intergenic | 30.0% |
| CATATGAGAAGAGACTTAAT+GGG | - | chr5_4:5781880-5781899 | None:intergenic | 30.0% | |
| ACATATGAGAAGAGACTTAA+TGG | - | chr5_4:5781881-5781900 | None:intergenic | 30.0% | |
| ! | TTTCCAAACTCAAACTTTTC+AGG | - | chr5_4:5782039-5782058 | None:intergenic | 30.0% |
| !! | ACTAAACTTGTTATGATCTG+TGG | - | chr5_4:5782163-5782182 | None:intergenic | 30.0% |
| TAGTATTGTGAATTCTTGCA+TGG | + | chr5_4:5782179-5782198 | Msa0832680:CDS | 30.0% | |
| AGTATTGTGAATTCTTGCAT+GGG | + | chr5_4:5782180-5782199 | Msa0832680:CDS | 30.0% | |
| !!! | ACTAAAGAGTTTTTGGAGTA+TGG | - | chr5_4:5782225-5782244 | None:intergenic | 30.0% |
| ATGTTAAACGGACCAATTAT+TGG | + | chr5_4:5782397-5782416 | Msa0832680:CDS | 30.0% | |
| TGTTAAACGGACCAATTATT+GGG | + | chr5_4:5782398-5782417 | Msa0832680:CDS | 30.0% | |
| ! | TGGATCCTCAAATTTCTTTT+TGG | + | chr5_4:5782484-5782503 | Msa0832680:CDS | 30.0% |
| AGACTCCAAAAAGAAATTTG+AGG | - | chr5_4:5782492-5782511 | None:intergenic | 30.0% | |
| CTTCATTGGATCATATATGA+AGG | + | chr5_4:5782540-5782559 | Msa0832680:CDS | 30.0% | |
| !!! | GTTTTTGTTTTGATAGTGAG+AGG | + | chr5_4:5782586-5782605 | Msa0832680:intron | 30.0% |
| AATCTAGTAGACATGTTATC+AGG | - | chr5_4:5782666-5782685 | None:intergenic | 30.0% | |
| TGATAACATGTCTACTAGAT+TGG | + | chr5_4:5782665-5782684 | Msa0832680:CDS | 30.0% | |
| TATTAGATTGGGAGAATTGA+AGG | + | chr5_4:5782701-5782720 | Msa0832680:intron | 30.0% | |
| ATTAGATTGGGAGAATTGAA+GGG | + | chr5_4:5782702-5782721 | Msa0832680:intron | 30.0% | |
| GGATTTCTTTACATTTGTGA+TGG | + | chr5_4:5782723-5782742 | Msa0832680:intron | 30.0% | |
| TTTCGAGAATGTTACAATGT+GGG | + | chr5_4:5782752-5782771 | Msa0832680:intron | 30.0% | |
| CACTCTAAACAAGAGAATTA+TGG | + | chr5_4:5782900-5782919 | Msa0832680:intron | 30.0% | |
| GATATTAGACTTGGAATATG+TGG | - | chr5_4:5782975-5782994 | None:intergenic | 30.0% | |
| TCTTTCAGTGATATTAGACT+TGG | - | chr5_4:5782984-5783003 | None:intergenic | 30.0% | |
| CCATCAACACAGAAATATAA+AGG | - | chr5_4:5783508-5783527 | None:intergenic | 30.0% | |
| ! | CCTTTATATTTCTGTGTTGA+TGG | + | chr5_4:5783505-5783524 | Msa0832680:intron | 30.0% |
| ! | TTATATTTCTGTGTTGATGG+AGG | + | chr5_4:5783508-5783527 | Msa0832680:intron | 30.0% |
| !! | GATAAAACTGCAATTTGTTG+GGG | - | chr5_4:5783620-5783639 | None:intergenic | 30.0% |
| GTTATCAAGTCACCATAAAA+AGG | - | chr5_4:5783757-5783776 | None:intergenic | 30.0% | |
| ACTAGACTGAATTGTTATCT+TGG | + | chr5_4:5784189-5784208 | Msa0832680:intron | 30.0% | |
| GAGCACTTGAAAAACAATTT+AGG | - | chr5_4:5784286-5784305 | None:intergenic | 30.0% | |
| !!! | TTTTCAAGTGCTCTTTGAAA+AGG | + | chr5_4:5784293-5784312 | Msa0832680:intron | 30.0% |
| ! | TTTCAAGTGCTCTTTGAAAA+GGG | + | chr5_4:5784294-5784313 | Msa0832680:intron | 30.0% |
| GAGGTATGGAAAGTAAAAAA+AGG | + | chr5_4:5784469-5784488 | Msa0832680:intron | 30.0% | |
| GAATAGTTAAATACAGAAGG+AGG | - | chr5_4:5784719-5784738 | None:intergenic | 30.0% | |
| CCTTCTGTATTTAACTATTC+CGG | + | chr5_4:5784719-5784738 | Msa0832680:intron | 30.0% | |
| TAGTTTATATTCTGGCAACA+TGG | - | chr5_4:5785118-5785137 | None:intergenic | 30.0% | |
| TTGCCAGAATATAAACTACT+AGG | + | chr5_4:5785120-5785139 | Msa0832680:intron | 30.0% | |
| ! | AACTACTAGGTAATCTTTTC+AGG | + | chr5_4:5785133-5785152 | Msa0832680:intron | 30.0% |
| !!! | CTTTTTTTATTGCAGGATCA+AGG | - | chr5_4:5785170-5785189 | None:intergenic | 30.0% |
| CTTGATCCTGCAATAAAAAA+AGG | + | chr5_4:5785168-5785187 | Msa0832680:CDS | 30.0% | |
| GTAAATTGTCAGAAATTGCA+AGG | + | chr5_4:5785248-5785267 | Msa0832680:intron | 30.0% | |
| GTATTAGATAAGTACCTTAC+AGG | - | chr5_4:5785280-5785299 | None:intergenic | 30.0% | |
| AAAAAAAGCAGAAACTGGAA+GGG | - | chr5_4:5785844-5785863 | None:intergenic | 30.0% | |
| TTGCTTTAATGCTGCATCTT+TGG | - | chr5_4:5781786-5781805 | None:intergenic | 35.0% | |
| TTTCGAAAGATGAGACTAAC+TGG | - | chr5_4:5781976-5781995 | None:intergenic | 35.0% | |
| ! | GATCCTGAAAAGTTTGAGTT+TGG | + | chr5_4:5782033-5782052 | Msa0832680:CDS | 35.0% |
| ! | GCAGATCACTAAAGAGTTTT+TGG | - | chr5_4:5782232-5782251 | None:intergenic | 35.0% |
| TTTGGTCCTTGAGATACATA+CGG | + | chr5_4:5782431-5782450 | Msa0832680:CDS | 35.0% | |
| ACTTCAACATTTCTCCATGA+TGG | - | chr5_4:5782465-5782484 | None:intergenic | 35.0% | |
| ATCATGGAGAAATGTTGAAG+TGG | + | chr5_4:5782464-5782483 | Msa0832680:CDS | 35.0% | |
| ATGTATCCGACATGTGTTAA+CGG | + | chr5_4:5782513-5782532 | Msa0832680:CDS | 35.0% | |
| TCATGATTTCCAAACACATG+TGG | - | chr5_4:5782633-5782652 | None:intergenic | 35.0% | |
| CTTTCGAGAATGTTACAATG+TGG | + | chr5_4:5782751-5782770 | Msa0832680:intron | 35.0% | |
| ! | TGTTACAATGTGGGTTATGA+AGG | + | chr5_4:5782761-5782780 | Msa0832680:intron | 35.0% |
| ! | ATGTGGGTTATGAAGGAATA+TGG | + | chr5_4:5782768-5782787 | Msa0832680:intron | 35.0% |
| GTTATGAAGGAATATGGCAT+TGG | + | chr5_4:5782774-5782793 | Msa0832680:intron | 35.0% | |
| ! | AATATGGCATTGGAGAATCA+TGG | + | chr5_4:5782784-5782803 | Msa0832680:intron | 35.0% |
| TCACTGAAAGATGTTGTGAA+AGG | + | chr5_4:5782993-5783012 | Msa0832680:CDS | 35.0% | |
| !! | TTGAGGTGTTGAAATACTCA+AGG | + | chr5_4:5783024-5783043 | Msa0832680:CDS | 35.0% |
| TGAAATACTCAAGGTTCGAA+AGG | + | chr5_4:5783033-5783052 | Msa0832680:CDS | 35.0% | |
| TCGTAAGACGAATACTCAAA+TGG | + | chr5_4:5783122-5783141 | Msa0832680:intron | 35.0% | |
| CCTTAAGTGAGAAGATCTAT+AGG | - | chr5_4:5783230-5783249 | None:intergenic | 35.0% | |
| CCTATAGATCTTCTCACTTA+AGG | + | chr5_4:5783227-5783246 | Msa0832680:intron | 35.0% | |
| CAAGATGTTATTAAAGGCAG+TGG | - | chr5_4:5783348-5783367 | None:intergenic | 35.0% | |
| CACTGCCTTTAATAACATCT+TGG | + | chr5_4:5783346-5783365 | Msa0832680:intron | 35.0% | |
| CAGAGCCAAGATGTTATTAA+AGG | - | chr5_4:5783354-5783373 | None:intergenic | 35.0% | |
| TCAATTCTCACATCACAAAC+TGG | - | chr5_4:5783423-5783442 | None:intergenic | 35.0% | |
| ACTTTCTCTTATCTGATGAG+AGG | + | chr5_4:5783467-5783486 | Msa0832680:intron | 35.0% | |
| ! | GTTGATGGAGGATGAAAAAA+TGG | + | chr5_4:5783520-5783539 | Msa0832680:intron | 35.0% |
| ! | ACACGTTCTTCACCTTTTTA+TGG | + | chr5_4:5783742-5783761 | Msa0832680:intron | 35.0% |
| ATATCTTCATCCTCATCTGA+TGG | + | chr5_4:5783778-5783797 | Msa0832680:intron | 35.0% | |
| ACATACTCTTATTGGAAAGC+CGG | - | chr5_4:5783810-5783829 | None:intergenic | 35.0% | |
| !! | GAGTATGTTTGTTTCTGCAT+TGG | + | chr5_4:5783822-5783841 | Msa0832680:intron | 35.0% |
| !! | TGGGCTTTGTTACGTAATAT+TGG | + | chr5_4:5783885-5783904 | Msa0832680:intron | 35.0% |
| AGTAGGAATTTCTATACACC+AGG | + | chr5_4:5784039-5784058 | Msa0832680:intron | 35.0% | |
| TGCACATATTTGAGCTCAAA+TGG | + | chr5_4:5784563-5784582 | Msa0832680:intron | 35.0% | |
| CCGGAATAGTTAAATACAGA+AGG | - | chr5_4:5784722-5784741 | None:intergenic | 35.0% | |
| TCTGTATTTAACTATTCCGG+AGG | + | chr5_4:5784722-5784741 | Msa0832680:intron | 35.0% | |
| TTTATTGCAAAATCCATGCC+AGG | + | chr5_4:5784795-5784814 | Msa0832680:CDS | 35.0% | |
| TGCTTTCATCTCTTGACATT+GGG | - | chr5_4:5784875-5784894 | None:intergenic | 35.0% | |
| ATGCTTTCATCTCTTGACAT+TGG | - | chr5_4:5784876-5784895 | None:intergenic | 35.0% | |
| !! | TACTAGGTAATCTTTTCAGG+TGG | + | chr5_4:5785136-5785155 | Msa0832680:intron | 35.0% |
| !!! | ATGCACCCTTTTTTTATTGC+AGG | - | chr5_4:5785177-5785196 | None:intergenic | 35.0% |
| ! | TGCAATAAAAAAAGGGTGCA+TGG | + | chr5_4:5785176-5785195 | Msa0832680:CDS | 35.0% |
| ! | ATAAAAAAAGGGTGCATGGA+CGG | + | chr5_4:5785180-5785199 | Msa0832680:CDS | 35.0% |
| GCTCACTATCACCAAATATT+TGG | + | chr5_4:5785223-5785242 | Msa0832680:CDS | 35.0% | |
| CTTATCTAATACTGTTGTGC+AGG | + | chr5_4:5785288-5785307 | Msa0832680:intron | 35.0% | |
| AGCATGTATTTATAGAGTGC+AGG | - | chr5_4:5785322-5785341 | None:intergenic | 35.0% | |
| GCTGACAGTTCTTAACATAA+AGG | - | chr5_4:5785433-5785452 | None:intergenic | 35.0% | |
| ! | CACATCTACAACACATTTTC+TGG | + | chr5_4:5785457-5785476 | Msa0832680:intron | 35.0% |
| ! | TTTTATAGCATTGTCACTCC+TGG | - | chr5_4:5785751-5785770 | None:intergenic | 35.0% |
| CAGCTCAATGAAAAAGAAGT+CGG | + | chr5_4:5785784-5785803 | Msa0832680:intron | 35.0% | |
| AAAAAAGCAGAAACTGGAAG+GGG | - | chr5_4:5785843-5785862 | None:intergenic | 35.0% | |
| GAAAAAAAGCAGAAACTGGA+AGG | - | chr5_4:5785845-5785864 | None:intergenic | 35.0% | |
| ! | GGGAAGTTGAAGGAGAATTT+TGG | - | chr5_4:5781860-5781879 | None:intergenic | 40.0% |
| GAGACTTAATGGGAAGTTGA+AGG | - | chr5_4:5781870-5781889 | None:intergenic | 40.0% | |
| GTAGATGTGTGTGCAAAACT+TGG | + | chr5_4:5781899-5781918 | Msa0832680:intron | 40.0% | |
| ! | TCGTGGTGCCAAATCATATT+TGG | + | chr5_4:5782101-5782120 | Msa0832680:CDS | 40.0% |
| TTCCTGAAGCTACTAAAGAC+TGG | + | chr5_4:5782280-5782299 | Msa0832680:CDS | 40.0% | |
| AACCAGTCTTTAGTAGCTTC+AGG | - | chr5_4:5782285-5782304 | None:intergenic | 40.0% | |
| ACGCTCAAACACCCAATAAT+TGG | - | chr5_4:5782412-5782431 | None:intergenic | 40.0% | |
| TTATTGGGTGTTTGAGCGTT+TGG | + | chr5_4:5782413-5782432 | Msa0832680:CDS | 40.0% | |
| TTCCAACCGTATGTATCTCA+AGG | - | chr5_4:5782440-5782459 | None:intergenic | 40.0% | |
| TGATTTCCAAACACATGTGG+AGG | - | chr5_4:5782630-5782649 | None:intergenic | 40.0% | |
| ! | CATTGGAGAATCATGGACTA+AGG | + | chr5_4:5782791-5782810 | Msa0832680:intron | 40.0% |
| GGTTTACACCATTGATGCTT+CGG | + | chr5_4:5782812-5782831 | Msa0832680:intron | 40.0% | |
| TGTGAAAGGAAACGATGTTG+AGG | + | chr5_4:5783007-5783026 | Msa0832680:CDS | 40.0% | |
| AGTTTAATCCTTCAAGTGGG+AGG | + | chr5_4:5784450-5784469 | Msa0832680:intron | 40.0% | |
| CTCACAGACATCATCCTAAT+TGG | - | chr5_4:5784512-5784531 | None:intergenic | 40.0% | |
| TGGTTAATGAGTTGTGCCAA+AGG | + | chr5_4:5784583-5784602 | Msa0832680:intron | 40.0% | |
| !!! | GGAACAACTCTGCTTTTTCA+TGG | + | chr5_4:5784644-5784663 | Msa0832680:intron | 40.0% |
| TTTAACTATTCCGGAGGATG+AGG | + | chr5_4:5784728-5784747 | Msa0832680:intron | 40.0% | |
| TTGGAAAGCAATGTCAAGAG+AGG | + | chr5_4:5784823-5784842 | Msa0832680:CDS | 40.0% | |
| !! | TTGACATAGCCTTTTGCTGT+TGG | + | chr5_4:5784975-5784994 | Msa0832680:intron | 40.0% |
| ACAATTCGATACAGCAACTG+AGG | - | chr5_4:5785046-5785065 | None:intergenic | 40.0% | |
| ! | TTGGTGATAGTGAGCAAGTA+TGG | - | chr5_4:5785218-5785237 | None:intergenic | 40.0% |
| ! | ACGTCTTCTCTGATTTTCGA+GGG | - | chr5_4:5785616-5785635 | None:intergenic | 40.0% |
| ! | TACGTCTTCTCTGATTTTCG+AGG | - | chr5_4:5785617-5785636 | None:intergenic | 40.0% |
| TTTGGATAGTAGCCCTTGGT+GGG | - | chr5_4:5781768-5781787 | None:intergenic | 45.0% | |
| CATCTTTGGATAGTAGCCCT+TGG | - | chr5_4:5781772-5781791 | None:intergenic | 45.0% | |
| ! | GATCGCACTCAAGAAGGTAT+AGG | - | chr5_4:5782017-5782036 | None:intergenic | 45.0% |
| TTTCAGGATCGCACTCAAGA+AGG | - | chr5_4:5782023-5782042 | None:intergenic | 45.0% | |
| CGAAGAGGAAGCTTCAATGT+AGG | - | chr5_4:5782084-5782103 | None:intergenic | 45.0% | |
| ACATTGAAGCTTCCTCTTCG+TGG | + | chr5_4:5782084-5782103 | Msa0832680:intron | 45.0% | |
| ! | TATGATTTGGCACCACGAAG+AGG | - | chr5_4:5782099-5782118 | None:intergenic | 45.0% |
| TTATGAACTCCCTCGTTGCA+GGG | - | chr5_4:5782257-5782276 | None:intergenic | 45.0% | |
| ! | AAGACTGGTTAAAGACGCCT+CGG | + | chr5_4:5782295-5782314 | Msa0832680:CDS | 45.0% |
| GTCCTTGAGATACATACGGT+TGG | + | chr5_4:5782435-5782454 | Msa0832680:CDS | 45.0% | |
| ATACGGTTGGAACACCATCA+TGG | + | chr5_4:5782448-5782467 | Msa0832680:CDS | 45.0% | |
| AGTGCACCGTTAACACATGT+CGG | - | chr5_4:5782522-5782541 | None:intergenic | 45.0% | |
| GTGTTAACGGTGCACTTCAT+TGG | + | chr5_4:5782526-5782545 | Msa0832680:CDS | 45.0% | |
| TTACACCATTGATGCTTCGG+TGG | + | chr5_4:5782815-5782834 | Msa0832680:intron | 45.0% | |
| CAACTTAAACCACACCACCA+CGG | - | chr5_4:5782870-5782889 | None:intergenic | 45.0% | |
| !! | GTGGTGTGGTTTAAGTTGGT+TGG | + | chr5_4:5782872-5782891 | Msa0832680:intron | 45.0% |
| ATCAAAACCTTCGCTGACAG+AGG | - | chr5_4:5784002-5784021 | None:intergenic | 45.0% | |
| GGAATTTCTATACACCAGGC+AGG | + | chr5_4:5784043-5784062 | Msa0832680:intron | 45.0% | |
| AATCCTTCAAGTGGGAGGTA+TGG | + | chr5_4:5784455-5784474 | Msa0832680:intron | 45.0% | |
| TTTCCATACCTCCCACTTGA+AGG | - | chr5_4:5784461-5784480 | None:intergenic | 45.0% | |
| TGATAGGCAGCAGTCCAATT+AGG | + | chr5_4:5784495-5784514 | Msa0832680:intron | 45.0% | |
| ! | TGCCAAAGGACGTAGCATTT+TGG | + | chr5_4:5784597-5784616 | Msa0832680:intron | 45.0% |
| CTCCAAAATGCTACGTCCTT+TGG | - | chr5_4:5784602-5784621 | None:intergenic | 45.0% | |
| !!! | CTCTGCTTTTTCATGGCGTT+CGG | + | chr5_4:5784651-5784670 | Msa0832680:intron | 45.0% |
| !!! | TCTGCTTTTTCATGGCGTTC+GGG | + | chr5_4:5784652-5784671 | Msa0832680:intron | 45.0% |
| AAATCCATGCCAGGTCGTAT+TGG | + | chr5_4:5784804-5784823 | Msa0832680:CDS | 45.0% | |
| CATTGCTTTCCAATACGACC+TGG | - | chr5_4:5784816-5784835 | None:intergenic | 45.0% | |
| ! | CCAAAGCATCCAACAGCAAA+AGG | - | chr5_4:5784987-5785006 | None:intergenic | 45.0% |
| !!! | CCTTTTGCTGTTGGATGCTT+TGG | + | chr5_4:5784984-5785003 | Msa0832680:intron | 45.0% |
| TTGCAAGGGTTCTTCCTGTA+AGG | + | chr5_4:5785263-5785282 | Msa0832680:intron | 45.0% | |
| !! | TTCTCTGATTTTCGAGGGAG+AGG | - | chr5_4:5785611-5785630 | None:intergenic | 45.0% |
| CTGTATCATTTGGGTAAGCC+AGG | + | chr5_4:5785730-5785749 | Msa0832680:intron | 45.0% | |
| !! | ATCACCTACTTGGTGTGACA+TGG | + | chr5_4:5785811-5785830 | Msa0832680:CDS | 45.0% |
| ACATCCATGTCACACCAAGT+AGG | - | chr5_4:5785818-5785837 | None:intergenic | 45.0% | |
| !!! | TTTTAATATTTTATTTTGAT+TGG | + | chr5_4:5783068-5783087 | Msa0832680:intron | 5.0% |
| AGGGTTCAATTACCCCACCA+AGG | + | chr5_4:5781752-5781771 | Msa0832680:CDS | 50.0% | |
| GGGTTCAATTACCCCACCAA+GGG | + | chr5_4:5781753-5781772 | Msa0832680:CDS | 50.0% | |
| TTGGATAGTAGCCCTTGGTG+GGG | - | chr5_4:5781767-5781786 | None:intergenic | 50.0% | |
| CTTTGGATAGTAGCCCTTGG+TGG | - | chr5_4:5781769-5781788 | None:intergenic | 50.0% | |
| CTTATGAACTCCCTCGTTGC+AGG | - | chr5_4:5782258-5782277 | None:intergenic | 50.0% | |
| ! | TTACAGCCAAAGGTGCAAGC+TGG | + | chr5_4:5782318-5782337 | Msa0832680:intron | 50.0% |
| CCAAAACCAGCTTGCACCTT+TGG | - | chr5_4:5782327-5782346 | None:intergenic | 50.0% | |
| !! | CCAAAGGTGCAAGCTGGTTT+TGG | + | chr5_4:5782324-5782343 | Msa0832680:intron | 50.0% |
| CCAAACACATGTGGAGGAGT+AGG | - | chr5_4:5782624-5782643 | None:intergenic | 50.0% | |
| CCTACTCCTCCACATGTGTT+TGG | + | chr5_4:5782621-5782640 | Msa0832680:CDS | 50.0% | |
| ! | CGTGGTGGTGTGGTTTAAGT+TGG | + | chr5_4:5782868-5782887 | Msa0832680:intron | 50.0% |
| ATCGCTAGCATAATCCTGCC+TGG | - | chr5_4:5784060-5784079 | None:intergenic | 50.0% | |
| TCAAATAGGGCCTCATCCTC+CGG | - | chr5_4:5784741-5784760 | None:intergenic | 50.0% | |
| CTTTCCAATACGACCTGGCA+TGG | - | chr5_4:5784811-5784830 | None:intergenic | 50.0% | |
| TGATCTGCAACCCTGCAACG+AGG | + | chr5_4:5782244-5782263 | Msa0832680:CDS | 55.0% | |
| GATCTGCAACCCTGCAACGA+GGG | + | chr5_4:5782245-5782264 | Msa0832680:CDS | 55.0% | |
| TGCACCTTTGGCTGTAACCG+AGG | - | chr5_4:5782315-5782334 | None:intergenic | 55.0% | |
| ! | AGGAGCCACCGAAGCATCAA+TGG | - | chr5_4:5782823-5782842 | None:intergenic | 55.0% |
| TGATGCTTCGGTGGCTCCTT+TGG | + | chr5_4:5782824-5782843 | Msa0832680:intron | 55.0% | |
| GATGCTTCGGTGGCTCCTTT+GGG | + | chr5_4:5782825-5782844 | Msa0832680:intron | 55.0% | |
| ! | GTGGCTCCTTTGGGTCTTGT+GGG | + | chr5_4:5782834-5782853 | Msa0832680:intron | 55.0% |
| CACACCACCACGGATCTACA+GGG | - | chr5_4:5782860-5782879 | None:intergenic | 55.0% | |
| ! | CCTCATCTGATGGTGAGAGC+CGG | + | chr5_4:5783788-5783807 | Msa0832680:intron | 55.0% |
| ACAGAGGACGAGGAGAAGGA+GGG | - | chr5_4:5783986-5784005 | None:intergenic | 55.0% | |
| ! | AAAGGGTGCATGGACGGAAG+TGG | + | chr5_4:5785186-5785205 | Msa0832680:CDS | 55.0% |
| AGTCGGCAGCATCACCTACT+TGG | + | chr5_4:5785801-5785820 | Msa0832680:CDS | 55.0% | |
| GACGCCTCGGTTACAGCCAA+AGG | + | chr5_4:5782308-5782327 | Msa0832680:CDS | 60.0% | |
| GGTGGCTCCTTTGGGTCTTG+TGG | + | chr5_4:5782833-5782852 | Msa0832680:intron | 60.0% | |
| ACAGGGCCCACAAGACCCAA+AGG | - | chr5_4:5782843-5782862 | None:intergenic | 60.0% | |
| TTGTGGGCCCTGTAGATCCG+TGG | + | chr5_4:5782850-5782869 | Msa0832680:intron | 60.0% | |
| CCACACCACCACGGATCTAC+AGG | - | chr5_4:5782861-5782880 | None:intergenic | 60.0% | |
| ! | CCTGTAGATCCGTGGTGGTG+TGG | + | chr5_4:5782858-5782877 | Msa0832680:intron | 60.0% |
| CCGGCTCTCACCATCAGATG+AGG | - | chr5_4:5783791-5783810 | None:intergenic | 60.0% | |
| GACAGAGGACGAGGAGAAGG+AGG | - | chr5_4:5783987-5784006 | None:intergenic | 60.0% | |
| GCTGACAGAGGACGAGGAGA+AGG | - | chr5_4:5783990-5784009 | None:intergenic | 60.0% | |
| TCCTCGTCCTCTGTCAGCGA+AGG | + | chr5_4:5783992-5784011 | Msa0832680:intron | 60.0% | |
| ACCTTCGCTGACAGAGGACG+AGG | - | chr5_4:5783996-5784015 | None:intergenic | 60.0% | |
| GGTGCATGGACGGAAGTGGA+GGG | + | chr5_4:5785190-5785209 | Msa0832680:CDS | 60.0% | |
| TGGGCCCTGTAGATCCGTGG+TGG | + | chr5_4:5782853-5782872 | Msa0832680:intron | 65.0% | |
| GGGTGCATGGACGGAAGTGG+AGG | + | chr5_4:5785189-5785208 | Msa0832680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 5781739 | 5785883 | 5781739 | ID=Msa0832680;Name=Msa0832680 |
| chr5_4 | mRNA | 5781739 | 5785883 | 5781739 | ID=Msa0832680-mRNA-1;Parent=Msa0832680;Name=Msa0832680-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.22|0|1|0|0|10|0|416 |
| chr5_4 | exon | 5781739 | 5781884 | 5781739 | ID=Msa0832680-mRNA-1:exon:2452;Parent=Msa0832680-mRNA-1 |
| chr5_4 | exon | 5781903 | 5782068 | 5781903 | ID=Msa0832680-mRNA-1:exon:2453;Parent=Msa0832680-mRNA-1 |
| chr5_4 | exon | 5782093 | 5782329 | 5782093 | ID=Msa0832680-mRNA-1:exon:2454;Parent=Msa0832680-mRNA-1 |
| chr5_4 | exon | 5782375 | 5782583 | 5782375 | ID=Msa0832680-mRNA-1:exon:2455;Parent=Msa0832680-mRNA-1 |
| chr5_4 | exon | 5782602 | 5782697 | 5782602 | ID=Msa0832680-mRNA-1:exon:2456;Parent=Msa0832680-mRNA-1 |
| chr5_4 | exon | 5782986 | 5783054 | 5782986 | ID=Msa0832680-mRNA-1:exon:2457;Parent=Msa0832680-mRNA-1 |
| chr5_4 | exon | 5783687 | 5783723 | 5783687 | ID=Msa0832680-mRNA-1:exon:2458;Parent=Msa0832680-mRNA-1 |
| chr5_4 | exon | 5784744 | 5784844 | 5784744 | ID=Msa0832680-mRNA-1:exon:2459;Parent=Msa0832680-mRNA-1 |
| chr5_4 | exon | 5785155 | 5785247 | 5785155 | ID=Msa0832680-mRNA-1:exon:2460;Parent=Msa0832680-mRNA-1 |
| chr5_4 | exon | 5785787 | 5785883 | 5785787 | ID=Msa0832680-mRNA-1:exon:2461;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5781739 | 5781884 | 5781739 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5781903 | 5782068 | 5781903 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5782093 | 5782329 | 5782093 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5782375 | 5782583 | 5782375 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5782602 | 5782697 | 5782602 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5782986 | 5783054 | 5782986 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5783687 | 5783723 | 5783687 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5784744 | 5784844 | 5784744 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5785155 | 5785247 | 5785155 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| chr5_4 | CDS | 5785787 | 5785883 | 5785787 | ID=Msa0832680-mRNA-1:cds;Parent=Msa0832680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
