AlfalfaGEDB | Msa0833160

M. sativa cultivar zhongmu-4 / Msa0833160

KEGG: K04733
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833160	XP_003611204.2	97.978	890	18	0	1	890	3	892	0.0	1771

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833160	sp\|C0LGE4\|Y1124_ARATH	64.819	884	301	6	6	886	3	879	0.0	1143

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833160	G7KEV5	97.978	890	18	0	1	890	3	892	0.0	1771

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833160	MtrunA17_Chr5g0398441	97.978	890	18	0	1	890	3	892	0.0	1771
Msa0833160	MtrunA17_Chr3g0128731	34.841	973	510	18	23	890	31	984	4.43e-172	525
Msa0833160	MtrunA17_Chr7g0244931	34.572	969	535	22	1	890	1	949	7.89e-161	494
Msa0833160	MtrunA17_Chr7g0222321	36.074	973	502	23	16	884	50	1006	4.22e-151	471
Msa0833160	MtrunA17_Chr4g0012841	34.441	903	519	19	13	890	7	861	1.83e-142	444
Msa0833160	MtrunA17_Chr1g0204461	31.491	959	539	16	10	883	19	944	1.05e-129	414
Msa0833160	MtrunA17_Chr1g0169841	32.258	868	495	15	75	880	250	1086	1.35e-122	398
Msa0833160	MtrunA17_Chr1g0169841	34.000	450	264	6	32	475	35	457	4.09e-53	201
Msa0833160	MtrunA17_Chr1g0169841	32.930	413	275	2	87	498	214	625	1.13e-46	181
Msa0833160	MtrunA17_Chr2g0312651	33.924	846	497	16	75	885	269	1087	9.63e-122	395

Showing 1 to 10 of 1,135 entries

Previous1 2 3 4 5…114Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0833160	AT1G12460.1	64.819	884	301	6	6	886	3	879	0.0	1143
Msa0833160	AT1G62950.1	64.374	887	299	8	13	889	11	890	0.0	1103
Msa0833160	AT1G12460.2	67.031	640	204	5	250	886	105	740	0.0	838
Msa0833160	AT1G12460.2	35.467	375	194	8	6	379	3	330	2.69e-56	207
Msa0833160	AT3G56370.1	36.317	972	503	24	9	884	1	952	5.28e-161	496
Msa0833160	AT3G28040.1	35.107	977	493	21	36	883	40	1004	5.04e-156	484
Msa0833160	AT5G01890.1	34.053	972	518	22	17	884	8	960	6.61e-149	464
Msa0833160	AT5G07180.1	31.799	956	521	21	13	883	11	920	8.50e-137	432
Msa0833160	AT5G62230.2	32.276	883	525	17	32	883	29	869	3.23e-133	422
Msa0833160	AT5G62230.1	31.257	931	519	19	32	883	29	917	6.49e-129	412

Showing 1 to 10 of 982 entries

Previous1 2 3 4 5…99Next

Find 278 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTCTTTCTCAGTAGC+TGG	0.489093	5_4:+6341399	Msa0833150:three_prime_UTR
AAACCTCATCGGCGAAATTC+CGG	0.301654	5_4:-6340368	Msa0833160:CDS
AAACCTTGTATCTGAAATCA+TGG	0.453144	5_4:-6337822	Msa0833160:three_prime_UTR
AAAGGAGCACCGCAGAGAAA+AGG	0.484488	5_4:+6339911	Msa0833150:three_prime_UTR
AAAGGATTATTGGAAAATGC+AGG	0.521378	5_4:+6339929	Msa0833150:three_prime_UTR
AAATATGAAGATTGGGAGGC+AGG	0.463881	5_4:-6339617	Msa0833160:CDS
AAATCTAGAAAACGAATATT+AGG	0.330922	5_4:+6341051	Msa0833150:three_prime_UTR
AAATGATATTCCTGTAGTAA+TGG	0.500041	5_4:+6338123	Msa0833150:CDS
AAATGTTATAATTGGAAAGT+TGG	0.382735	5_4:-6339666	Msa0833160:CDS
AAATTAGGTAATAACTCGAT+AGG	0.584585	5_4:-6340454	Msa0833160:CDS

Showing 1 to 10 of 278 entries

Previous1 2 3 4 5…28Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTAATGAGAATGCTACATGT+TGG	-	chr5_4:6337796-6337815	Msa0833160:three_prime_UTR	30.0%
TTGTAGAAAGAATTGTGCTT+TGG	-	chr5_4:6338161-6338180	Msa0833160:three_prime_UTR	30.0%
TTGAGGATATTGACATTGTT+TGG	-	chr5_4:6338235-6338254	Msa0833160:three_prime_UTR	30.0%
TGAGGATATTGACATTGTTT+GGG	-	chr5_4:6338236-6338255	Msa0833160:three_prime_UTR	30.0%
TTATCAAAGAATGGCTTCAA+TGG	-	chr5_4:6338394-6338413	Msa0833160:three_prime_UTR	30.0%
TATCAAAGAATGGCTTCAAT+GGG	-	chr5_4:6338395-6338414	Msa0833160:three_prime_UTR	30.0%
CTTTCTCATAACAATCTTGT+TGG	-	chr5_4:6338469-6338488	Msa0833160:three_prime_UTR	30.0%
AATCCAAATGCATTAGACTA+TGG	+	chr5_4:6338666-6338685	Msa0833150:three_prime_UTR	30.0%
GCAATTCTTGAATATCAACT+GGG	+	chr5_4:6338933-6338952	Msa0833150:three_prime_UTR	30.0%
TATGTGATAGATCTAGGAAT+TGG	+	chr5_4:6339350-6339369	Msa0833150:three_prime_UTR	30.0%

Showing 1 to 10 of 320 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	6337774	6341672	6337774	ID=Msa0833160;Name=Msa0833160
chr5_4	mRNA	6337774	6341672	6337774	ID=Msa0833160-mRNA-1;Parent=Msa0833160;Name=Msa0833160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=167\|1\|1\|1\|1\|1\|2\|960\|890
chr5_4	exon	6337774	6340234	6337774	ID=Msa0833160-mRNA-1:exon:2766;Parent=Msa0833160-mRNA-1
chr5_4	exon	6340334	6341672	6340334	ID=Msa0833160-mRNA-1:exon:2765;Parent=Msa0833160-mRNA-1
chr5_4	five_prime_UTR	6341506	6341672	6341506	ID=Msa0833160-mRNA-1:five_prime_utr;Parent=Msa0833160-mRNA-1
chr5_4	CDS	6340334	6341505	6340334	ID=Msa0833160-mRNA-1:cds;Parent=Msa0833160-mRNA-1
chr5_4	CDS	6338734	6340234	6338734	ID=Msa0833160-mRNA-1:cds;Parent=Msa0833160-mRNA-1
chr5_4	three_prime_UTR	6337774	6338733	6337774	ID=Msa0833160-mRNA-1:three_prime_utr;Parent=Msa0833160-mRNA-1

Gene Sequence

>Msa0833160

ATGAGAACACAGTGTCAAATTCATCTTTTTCATGCTCTATTCTGCTTCATTCTCTGCTTGTTTTGGTCTATTGCAACGGTTTCACCAGCTACTGAGAAAGAGATTTTACTTCAGTTCAAAGGTAACATCACTGAGGATCCACACAATACCTTGAGTTCATGGGTTTCTGGTGGAGACCCATGTCAAGGTTACACAGGTGTTTTCTGTAACATAGAAGGATTTGTAGAAAGAATTGTGCTTTGGAACACTAGCTTAGGTGGGGTGTTGTCACCAGCACTCTCAGGGTTGAAGAGGTTGAGGATATTGACATTGTTTGGGAATCGATTTTCGGGTAATATTCCAGATGATTATGCTGATCTTCACTCATTGTGGAAGATCAATTTCAGCTCCAATGCGTTATCCGGTTCGATCCCGGATTTCATTGGTGATTTGCCTAATATTCGTTTTCTAGATTTATCAAAGAATGGCTTCAATGGGGAGATACCTTCAGCTTTGTTTAGGTACTGCTATAAAACTAAGTTTGTTTCTCTTTCTCATAACAATCTTGTTGGTTCAATTCCTGTGTCTTTGGTGAATTGCTCTAACCTTGAAGGTTTTGATTTTTCTTTCAATAATCTTAGTGGTGTTGTCCCTTCTAGACTATGTGACATTCCTATGTTATCTTATGTATCACTGAGAAGCAATGCCTTATCAGGTAGTGTGGAAGAGCACGTTTCTGGATGCCATAGTCTAATGCATTTGGATTTTGGTAGTAATAGATTTACTGATTTGGCTCCATTCAGCATCCTAGGACTGCAAAATCTTACATATTTCAATATATCCTATAATGGGTTTGAAGGACAAATTCCTGATATCACTGCATGTAGTGAGAGATTAGTGGTCTTTGATGCTTCAGGGAATAATTTGGATGGGGCTATTCCCTCTAGCATAACTAGATGCAAGAACTTAAAGCTCTTGTCCTTGGAGTTGAATAAGCTGAAAGGGAGTATCCCAGTTGATATTCAAGAATTGCGAGGACTATTGGTTATCAAATTAGGTAATAACTCGATAGGCGGAATGATTCCTGAGGGGTTTGGCAACATTGAACTGCTTGAATTGCTGGATTTGAACAACCTAAACCTCATCGGCGAAATTCCGGCTGACATAACAAATTGCAAGTTTCTTCTTGAGCTGGATGTCTCCGGTAATAACTTAGACGGTGAGATTCCTCAGTCTGTTTACAAAATGACAAATCTTGAAGCCCTTGACATGCATCATAACCAGCTCAAGGGAAGCATCCCTTCAAGCCTAGGAAACCTATCAAGGATCCAATTCCTAGATCTATCACATAATTCATTTTCTGGTTCAATCCCTCCTTCACTTGGAGATTTAAATAACTTGACACATTTTGATCTCTCATTCAACAATCTCTCTGGTGTCATTCCTGATATTGCAACAATACAGCATTTTGGTGCACCTGCATTTTCCAATAATCCTTTTCTCTGCGGTGCTCCTTTAGATATCACTTGCTCTGCAAACGGAACAAGATCGCCATCTTCACCTCCTGGGAAGACTAAACTTCTCAGTGTGTCTGCTATTGTTGCCATTGTTGCTGCAGCTGTGATTCTAACTGGGGTTTGTTTGGTGACCATCATGAGTATTAGGGCCCGACGTAGAAAAAAAGACGATGATCAAATTATGATTGTTGAGAGTACACCTCTAGGATCAACAGAATCATCAAATGTTATAATTGGAAAGTTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGCACCAAAGCATTGCTTGACAAGGAGTCGTTGATAGGAGGCGGATCGATTGGTACAGTCTACAAAACCGATTTTGAAGGTGACGTCTCAATCGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCAGAAATCAAGAGGAATTCGAAAATGAAATTGGGCGACTAGGAAACCTTCAACACTGTAATTTAGTTGCATTTCAAGGTTACTACTGGTCCTCTTCAATGCAGTTGATTTTGTCAGAGTTTGTTTCAAATGGAAATCTCTATGATAATCTACATGGGCTTGGATATCCTGGAACCAGCACAAGTAGAGGCAATAGGGAATTATATTGGTCTAGAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCCCTTGCCTATCTCCACCATGATTGTCGCCCTCCGATCCTTCACCTCAACCTTAAATCCTCTAACATACTCTTAGATGAAAAATATGAAGCCAAGTTATCTGATTATGGATTAGGAAAGTTGCTACCTATTTTGGATAATTTCGGTCTCACCAAGTTCCACAATGCTGTTGGATATGTTGCACCAGAGTTGGCTCAAAGCTTTAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTCGGTGTCATTCTTTTGGAGCTAGTTACAGGGAGGAAGCCTGTGGAAAGTGTAACCACGCATGAGGTTGTTGTTTTGTGTGAATATGTAAGAAGTTTGTTGGAAACTGGCTCAGCTTCAAACTGCTTTGACAGGAATTTACAAGGATTTGTTGAGAATGAATTGATTCAGGTTATGAAATTAGGGCTAATTTGTACTTCAGAGGATCCTTTAAGAAGACCAAGCATGGCTGAGATTGTTCAGGTCCTTGAGTCCATCAGAGATGGATCGGAATCTCATTAA

Protein sequence

>Msa0833160

MRTQCQIHLFHALFCFILCLFWSIATVSPATEKEILLQFKGNITEDPHNTLSSWVSGGDPCQGYTGVFCNIEGFVERIVLWNTSLGGVLSPALSGLKRLRILTLFGNRFSGNIPDDYADLHSLWKINFSSNALSGSIPDFIGDLPNIRFLDLSKNGFNGEIPSALFRYCYKTKFVSLSHNNLVGSIPVSLVNCSNLEGFDFSFNNLSGVVPSRLCDIPMLSYVSLRSNALSGSVEEHVSGCHSLMHLDFGSNRFTDLAPFSILGLQNLTYFNISYNGFEGQIPDITACSERLVVFDASGNNLDGAIPSSITRCKNLKLLSLELNKLKGSIPVDIQELRGLLVIKLGNNSIGGMIPEGFGNIELLELLDLNNLNLIGEIPADITNCKFLLELDVSGNNLDGEIPQSVYKMTNLEALDMHHNQLKGSIPSSLGNLSRIQFLDLSHNSFSGSIPPSLGDLNNLTHFDLSFNNLSGVIPDIATIQHFGAPAFSNNPFLCGAPLDITCSANGTRSPSSPPGKTKLLSVSAIVAIVAAAVILTGVCLVTIMSIRARRRKKDDDQIMIVESTPLGSTESSNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTDFEGDVSIAVKKLETLGRIRNQEEFENEIGRLGNLQHCNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGLGYPGTSTSRGNRELYWSRRFQIALGTARALAYLHHDCRPPILHLNLKSSNILLDEKYEAKLSDYGLGKLLPILDNFGLTKFHNAVGYVAPELAQSFRQSEKCDVYSFGVILLELVTGRKPVESVTTHEVVVLCEYVRSLLETGSASNCFDRNLQGFVENELIQVMKLGLICTSEDPLRRPSMAEIVQVLESIRDGSESH*