Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834300 | XP_003611383.2 | 92.585 | 499 | 9 | 1 | 1 | 471 | 1 | 499 | 0.0 | 950 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834300 | sp|Q8W4H1|GAT26_ARATH | 46.990 | 515 | 199 | 13 | 1 | 448 | 1 | 508 | 1.34e-120 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834300 | G7JYK7 | 92.585 | 499 | 9 | 1 | 1 | 471 | 1 | 499 | 0.0 | 950 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0834300 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834300 | MtrunA17_Chr4g0055611 | 57.895 | 532 | 145 | 11 | 1 | 457 | 1 | 528 | 0.0 | 526 |
| Msa0834300 | MtrunA17_Chr5g0399781 | 96.109 | 257 | 9 | 1 | 1 | 257 | 1 | 256 | 0.0 | 518 |
| Msa0834300 | MtrunA17_Chr5g0399791 | 97.748 | 222 | 5 | 0 | 250 | 471 | 33 | 254 | 1.53e-158 | 449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834300 | AT4G17570.3 | 47.573 | 515 | 200 | 12 | 1 | 448 | 1 | 512 | 1.57e-126 | 377 |
| Msa0834300 | AT4G17570.1 | 46.990 | 515 | 199 | 13 | 1 | 448 | 1 | 508 | 1.36e-121 | 365 |
| Msa0834300 | AT4G17570.2 | 46.507 | 501 | 198 | 12 | 15 | 448 | 27 | 524 | 1.48e-114 | 347 |
| Msa0834300 | AT5G47140.1 | 46.029 | 491 | 199 | 12 | 1 | 448 | 1 | 468 | 2.74e-112 | 340 |
Find 102 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTAATGTGTTGCTTAA+TGG | 0.178798 | 5_4:-7310968 | None:intergenic |
| AGTCTTTGTGATAATTCTTT+TGG | 0.201366 | 5_4:-7310730 | None:intergenic |
| ATTACAATAATTAATTAAAA+TGG | 0.207776 | 5_4:-7306327 | None:intergenic |
| TATCTTCATCAAAAGCCTTT+TGG | 0.231803 | 5_4:-7308091 | None:intergenic |
| GATTGTCAAGGATTTGAAAT+TGG | 0.267403 | 5_4:+7311076 | Msa0834300:three_prime_UTR |
| AGCTCTCTTTCATTTGATAA+TGG | 0.271694 | 5_4:+7309266 | Msa0834300:CDS |
| CGCCTTTGATATCTCTTTGC+CGG | 0.285823 | 5_4:+7310081 | Msa0834300:CDS |
| TTCAAAGTCTCGCAGTCTTC+AGG | 0.296864 | 5_4:-7310112 | None:intergenic |
| ACCAAATTGTGCGCAGCTTT+CGG | 0.305747 | 5_4:-7308153 | None:intergenic |
| AGTGACGCATATTCTTATTC+TGG | 0.322140 | 5_4:+7309302 | Msa0834300:CDS |
| CATCAGGAGGCAAAGGAAAT+AGG | 0.324121 | 5_4:-7310770 | None:intergenic |
| TCCGAAAGCTGCGCACAATT+TGG | 0.336033 | 5_4:+7308152 | Msa0834300:CDS |
| GACCTGCTCAGTCAGTGGTC+TGG | 0.355510 | 5_4:+7308994 | Msa0834300:CDS |
| AACCACTATAATGTAGTATC+TGG | 0.362580 | 5_4:+7308038 | Msa0834300:CDS |
| ACCTGCTCAGTCAGTGGTCT+GGG | 0.368180 | 5_4:+7308995 | Msa0834300:CDS |
| TTGTTGTTTGTGCAGCCTTA+AGG | 0.373323 | 5_4:+7309994 | Msa0834300:intron |
| ATGAGTTGTCAAAGTCGAAA+TGG | 0.378385 | 5_4:+7310149 | Msa0834300:CDS |
| TAAGAATATGCGTCACTCAT+TGG | 0.378524 | 5_4:-7309296 | None:intergenic |
| GATGTATATGTTATAGTAGA+TGG | 0.382272 | 5_4:-7306147 | None:intergenic |
| AGCAGAAATCAGAACTTTCC+AGG | 0.401146 | 5_4:+7310377 | Msa0834300:CDS |
| AAGAATATGCGTCACTCATT+GGG | 0.411487 | 5_4:-7309295 | None:intergenic |
| TTGCATAGTATTGGCTTCTC+TGG | 0.427042 | 5_4:-7307855 | None:intergenic |
| GCACACCACTTTGGCGCAAT+GGG | 0.430676 | 5_4:+7307829 | Msa0834300:CDS |
| CCACATGCATTGCATAGTAT+TGG | 0.431658 | 5_4:-7307864 | None:intergenic |
| TAGCAAACCTAAAATATGAT+AGG | 0.432361 | 5_4:-7306291 | None:intergenic |
| ATGAGTAATCGATCAAGTTC+AGG | 0.432484 | 5_4:+7308113 | Msa0834300:CDS |
| CCAATGGTCTCTGTCGAGAT+AGG | 0.442024 | 5_4:+7309182 | Msa0834300:CDS |
| TTACACACCTTTACATGCTC+GGG | 0.442559 | 5_4:+7307920 | Msa0834300:CDS |
| CTGCACCCAACTTCATACTT+TGG | 0.442894 | 5_4:+7310897 | Msa0834300:CDS |
| GTCAAGGATTTGAAATTGGA+TGG | 0.445749 | 5_4:+7311080 | Msa0834300:three_prime_UTR |
| TTTCAGCAGCTTCTTGCAAA+AGG | 0.446745 | 5_4:+7310058 | Msa0834300:CDS |
| TCTCTTCACATTTGCAACAT+TGG | 0.446975 | 5_4:-7310345 | None:intergenic |
| CCATTAAGCAACACATTACA+AGG | 0.451212 | 5_4:+7310968 | Msa0834300:exon |
| ATGCATGTGGTTCGCGGTGG+AGG | 0.452122 | 5_4:+7307877 | Msa0834300:CDS |
| GTGAGCTTCTCAACAGAAGA+TGG | 0.452294 | 5_4:-7309074 | None:intergenic |
| AGCAAGTGTGAGCTTGCATC+AGG | 0.455435 | 5_4:-7310786 | None:intergenic |
| TGCAGCCTTAAGGTCATGTT+CGG | 0.457133 | 5_4:+7310004 | Msa0834300:intron |
| AAGAAGTGAACTTGCTCAAA+CGG | 0.458776 | 5_4:+7308009 | Msa0834300:CDS |
| ATTACACACCTTTACATGCT+CGG | 0.466186 | 5_4:+7307919 | Msa0834300:CDS |
| GGCACACCACTTTGGCGCAA+TGG | 0.466586 | 5_4:+7307828 | Msa0834300:intron |
| TGCGGAAAAGAATTATTAGA+AGG | 0.469116 | 5_4:-7310864 | None:intergenic |
| TTGATGATCAAAGGGCTTCA+AGG | 0.472955 | 5_4:+7307958 | Msa0834300:CDS |
| GTTCGGTAGCTCTCAATTCA+AGG | 0.476255 | 5_4:+7310021 | Msa0834300:CDS |
| ACAGATGCTAGTGATCTAAC+AGG | 0.476473 | 5_4:+7308179 | Msa0834300:CDS |
| AAAACAGTAACTAGAATTGA+AGG | 0.479850 | 5_4:-7306174 | None:intergenic |
| TGAGCACCAAAGTATGAAGT+TGG | 0.490384 | 5_4:-7310903 | None:intergenic |
| GAGTAGAATTCTAACCCATC+AGG | 0.493607 | 5_4:-7309867 | None:intergenic |
| TTGCAACAGGCACACCACTT+TGG | 0.494644 | 5_4:+7307820 | Msa0834300:intron |
| TGAGTTGTCAAAGTCGAAAT+GGG | 0.496810 | 5_4:+7310150 | Msa0834300:CDS |
| GATGCTATACCAGCAGATCC+TGG | 0.497891 | 5_4:-7310320 | None:intergenic |
| TCGGATGTTCCAGGATCTGC+TGG | 0.499260 | 5_4:+7310311 | Msa0834300:CDS |
| TGAGAAATGGTTGTGAAAAG+TGG | 0.500096 | 5_4:-7306077 | None:intergenic |
| CGATGCAGAGATGTAAAAGT+AGG | 0.503787 | 5_4:+7310279 | Msa0834300:intron |
| GACATGGAAGTGTTCTCATT+AGG | 0.509357 | 5_4:+7309204 | Msa0834300:CDS |
| ATGGTTGTGAAAAGTGGAAA+TGG | 0.516210 | 5_4:-7306071 | None:intergenic |
| CATAGTATTGGCTTCTCTGG+TGG | 0.517941 | 5_4:-7307852 | None:intergenic |
| ATGTATATGTTATAGTAGAT+GGG | 0.519260 | 5_4:-7306146 | None:intergenic |
| AGCTACCGAACATGACCTTA+AGG | 0.523689 | 5_4:-7310009 | None:intergenic |
| CTCCAGATACTACATTATAG+TGG | 0.528306 | 5_4:-7308040 | None:intergenic |
| TGCTGAGCTACTACTAGTGC+TGG | 0.529471 | 5_4:-7310928 | None:intergenic |
| AATGGAAGAGAAAAGAGCAT+TGG | 0.529613 | 5_4:-7306109 | None:intergenic |
| ATTATTGAAGTTTCTTCCTG+TGG | 0.538673 | 5_4:+7309827 | Msa0834300:CDS |
| TTACAACCAGGGATTCCAAA+AGG | 0.539474 | 5_4:+7308076 | Msa0834300:CDS |
| GAGCACCAAAGTATGAAGTT+GGG | 0.542626 | 5_4:-7310902 | None:intergenic |
| TCGTCGCGAGCTACATAACT+AGG | 0.544739 | 5_4:-7309230 | None:intergenic |
| TTCTGAGACATGGGTAAACA+AGG | 0.546162 | 5_4:+7306444 | Msa0834300:exon |
| TTATGAAAGTGAAGCACCAA+TGG | 0.548282 | 5_4:+7309166 | Msa0834300:CDS |
| GTTTCAGCCCGAGCATGTAA+AGG | 0.551747 | 5_4:-7307927 | None:intergenic |
| GGTTCGCGGTGGAGGACAAA+GGG | 0.557202 | 5_4:+7307885 | Msa0834300:CDS |
| GATACTGCTAAACTTCCTGA+TGG | 0.560155 | 5_4:+7309852 | Msa0834300:CDS |
| TGGGAATTTGTACAATCCAA+TGG | 0.563198 | 5_4:-7306127 | None:intergenic |
| TCCCAGACCACTGACTGAGC+AGG | 0.563264 | 5_4:-7308996 | None:intergenic |
| TGGTTCGCGGTGGAGGACAA+AGG | 0.567138 | 5_4:+7307884 | Msa0834300:CDS |
| TTTACATCTTAAATATATGA+CGG | 0.567772 | 5_4:+7311013 | Msa0834300:three_prime_UTR |
| TTTAGGACCTGCTCAGTCAG+TGG | 0.572891 | 5_4:+7308989 | Msa0834300:intron |
| AGTTTAGCAGTATCAACCAC+AGG | 0.576633 | 5_4:-7309843 | None:intergenic |
| GAAAGCTGCGCACAATTTGG+TGG | 0.579311 | 5_4:+7308155 | Msa0834300:CDS |
| CAGAGATGAAGACAATAATG+AGG | 0.584067 | 5_4:+7310703 | Msa0834300:intron |
| CACTTGTAACTCCACAGTGA+TGG | 0.587666 | 5_4:-7306473 | None:intergenic |
| GAGCTTGCATCAGGAGGCAA+AGG | 0.591960 | 5_4:-7310777 | None:intergenic |
| GATGCAGAGATGTAAAAGTA+GGG | 0.597722 | 5_4:+7310280 | Msa0834300:intron |
| GTCTCTGTCGAGATAGGACA+TGG | 0.606101 | 5_4:+7309188 | Msa0834300:CDS |
| ATACTGCTAAACTTCCTGAT+GGG | 0.607368 | 5_4:+7309853 | Msa0834300:CDS |
| TATGCAATGCATGTGGTTCG+CGG | 0.611941 | 5_4:+7307871 | Msa0834300:CDS |
| CACATTACAAGGTTATACTC+TGG | 0.616204 | 5_4:+7310979 | Msa0834300:three_prime_UTR |
| CCTATCTCGACAGAGACCAT+TGG | 0.618260 | 5_4:-7309182 | None:intergenic |
| GTAACTCCACAGTGATGGCA+AGG | 0.624432 | 5_4:-7306468 | None:intergenic |
| AAACAGTAACTAGAATTGAA+GGG | 0.626294 | 5_4:-7306173 | None:intergenic |
| AGATAGCATGAAATGAGAAG+CGG | 0.627497 | 5_4:+7311135 | Msa0834300:three_prime_UTR |
| CTTGCATCTGATTACAACCA+GGG | 0.633133 | 5_4:+7308065 | Msa0834300:CDS |
| CACTATAATGTAGTATCTGG+AGG | 0.635640 | 5_4:+7308041 | Msa0834300:CDS |
| AAGTGTGAGCTTGCATCAGG+AGG | 0.639748 | 5_4:-7310783 | None:intergenic |
| ACTTGCATCTGATTACAACC+AGG | 0.649715 | 5_4:+7308064 | Msa0834300:CDS |
| GTTGTCAAAGTCGAAATGGG+TGG | 0.657876 | 5_4:+7310153 | Msa0834300:CDS |
| ATCCGGCAAAGAGATATCAA+AGG | 0.663680 | 5_4:-7310083 | None:intergenic |
| CCAATACTATGCAATGCATG+TGG | 0.675078 | 5_4:+7307864 | Msa0834300:CDS |
| GGTGGCCCATTGCGCCAAAG+TGG | 0.675260 | 5_4:-7307834 | None:intergenic |
| GGGTGCAGAAGTTCTGCCTG+CGG | 0.683148 | 5_4:-7310882 | None:intergenic |
| GGTGGAACACTATCATAACA+AGG | 0.694043 | 5_4:+7310171 | Msa0834300:CDS |
| GCAATGCATGTGGTTCGCGG+TGG | 0.695010 | 5_4:+7307874 | Msa0834300:CDS |
| CAAGGACCTTGCCATCACTG+TGG | 0.727560 | 5_4:+7306462 | Msa0834300:CDS |
| TAAACTATGAAGAATTTACG+AGG | 0.736561 | 5_4:+7309778 | Msa0834300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATAAATATATAT+TGG | - | chr5_4:7306512-7306531 | None:intergenic | 0.0% |
| !! | AATATAAACTAAGAAAAATT+AGG | + | chr5_4:7306583-7306602 | Msa0834300:intron | 10.0% |
| !!! | TGTTGTATAATTTTTTTTAA+AGG | - | chr5_4:7309901-7309920 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAAAACATTTCT+GGG | + | chr5_4:7306236-7306255 | Msa0834300:five_prime_UTR | 15.0% |
| !! | AAAAAAAAGGAGAATAAAAA+TGG | - | chr5_4:7306370-7306389 | None:intergenic | 15.0% |
| !!! | ATTTTTATTCTCCTTTTTTT+TGG | + | chr5_4:7306369-7306388 | Msa0834300:five_prime_UTR | 15.0% |
| !!! | ATATTTTTTGACCAAAAAAA+AGG | - | chr5_4:7306383-7306402 | None:intergenic | 15.0% |
| !!! | TAAAATACATACTATTTTGA+AGG | - | chr5_4:7308262-7308281 | None:intergenic | 15.0% |
| !!! | TAAATTTGCTGATATTATTT+TGG | + | chr5_4:7309484-7309503 | Msa0834300:intron | 15.0% |
| !! | ATTTACAATAAAATGTTAGT+AGG | + | chr5_4:7309687-7309706 | Msa0834300:intron | 15.0% |
| !!! | AACATAATTGTTATTATGTT+TGG | + | chr5_4:7309744-7309763 | Msa0834300:intron | 15.0% |
| !! | TTTACATCTTAAATATATGA+CGG | + | chr5_4:7311013-7311032 | Msa0834300:three_prime_UTR | 15.0% |
| !! | AAAAAGATGTCTAAAAAATT+TGG | - | chr5_4:7311167-7311186 | None:intergenic | 15.0% |
| !! | ATGTATATGTTATAGTAGAT+GGG | - | chr5_4:7306149-7306168 | None:intergenic | 20.0% |
| !!! | AGTTACTGTTTTTGTTTTTT+TGG | + | chr5_4:7306185-7306204 | Msa0834300:five_prime_UTR | 20.0% |
| !!! | TTTTTTTGGTGTTCTTTTTA+AGG | + | chr5_4:7306199-7306218 | Msa0834300:five_prime_UTR | 20.0% |
| !!! | TTTTTAAGGACTAAAAAGAA+AGG | + | chr5_4:7306213-7306232 | Msa0834300:five_prime_UTR | 20.0% |
| !! | GAAGAAAAAAAAAACATTTC+TGG | + | chr5_4:7306235-7306254 | Msa0834300:five_prime_UTR | 20.0% |
| !!! | AAATTTTGCAGAAGAATAAA+GGG | - | chr5_4:7306415-7306434 | None:intergenic | 20.0% |
| !!! | AAAATTTTGCAGAAGAATAA+AGG | - | chr5_4:7306416-7306435 | None:intergenic | 20.0% |
| !! | ATTTATACAGATTCAAAAGT+AGG | + | chr5_4:7306628-7306647 | Msa0834300:intron | 20.0% |
| !!! | TTCATGTATTCTTATTTCAA+TGG | + | chr5_4:7307084-7307103 | Msa0834300:intron | 20.0% |
| !!! | ATTCATTTTTGTCTTCTAAA+AGG | + | chr5_4:7307151-7307170 | Msa0834300:intron | 20.0% |
| !!! | CACAGATTTATAAAACTTTT+TGG | - | chr5_4:7307308-7307327 | None:intergenic | 20.0% |
| !! | AAGAAGATATTGATACAAAA+GGG | - | chr5_4:7307595-7307614 | None:intergenic | 20.0% |
| !! | AAAAAATGGATAGTGAAATA+AGG | + | chr5_4:7308295-7308314 | Msa0834300:intron | 20.0% |
| !! | AATGAAAAAAAGAATTGAAG+AGG | + | chr5_4:7308658-7308677 | Msa0834300:intron | 20.0% |
| !! | ACAAATCATATATGTAAACA+CGG | - | chr5_4:7308824-7308843 | None:intergenic | 20.0% |
| !! | TTTGTGAAAAAACAAAAGAT+AGG | - | chr5_4:7308938-7308957 | None:intergenic | 20.0% |
| !!! | ATTTATTGTTTGGTTGATTT+AGG | + | chr5_4:7308972-7308991 | Msa0834300:intron | 20.0% |
| !!! | CATATAAGAATCAACTTTTT+TGG | - | chr5_4:7309411-7309430 | None:intergenic | 20.0% |
| !! | TTTAAATCTACAAAACACAA+GGG | - | chr5_4:7309612-7309631 | None:intergenic | 20.0% |
| !! | ATTTAAATCTACAAAACACA+AGG | - | chr5_4:7309613-7309632 | None:intergenic | 20.0% |
| !!! | AATTGTTATTATGTTTGGTT+AGG | + | chr5_4:7309749-7309768 | Msa0834300:intron | 20.0% |
| !! | ATCATTGATGAATAAATCAA+TGG | - | chr5_4:7310545-7310564 | None:intergenic | 20.0% |
| ! | GATGTATATGTTATAGTAGA+TGG | - | chr5_4:7306150-7306169 | None:intergenic | 25.0% |
| ! | AAACAGTAACTAGAATTGAA+GGG | - | chr5_4:7306176-7306195 | None:intergenic | 25.0% |
| ! | AAAACAGTAACTAGAATTGA+AGG | - | chr5_4:7306177-7306196 | None:intergenic | 25.0% |
| !! | AAAAACATTTCTGGGTATAT+TGG | + | chr5_4:7306244-7306263 | Msa0834300:five_prime_UTR | 25.0% |
| !! | TTTGCAACCTATCATATTTT+AGG | + | chr5_4:7306284-7306303 | Msa0834300:five_prime_UTR | 25.0% |
| ! | TAGCAAACCTAAAATATGAT+AGG | - | chr5_4:7306294-7306313 | None:intergenic | 25.0% |
| ! | ATGATGTTGTATTAAGCATT+TGG | + | chr5_4:7306655-7306674 | Msa0834300:intron | 25.0% |
| ! | AACTAACTGGAAAAAGATTA+AGG | + | chr5_4:7306788-7306807 | Msa0834300:intron | 25.0% |
| ! | ACTAACTGGAAAAAGATTAA+GGG | + | chr5_4:7306789-7306808 | Msa0834300:intron | 25.0% |
| !!! | ATGGTTTAAATTTTTTGTCG+CGG | + | chr5_4:7306850-7306869 | Msa0834300:intron | 25.0% |
| ! | CTTTATATTACGTTGAAATG+CGG | + | chr5_4:7306892-7306911 | Msa0834300:intron | 25.0% |
| ! | CATTAACATTTAACAGTATC+AGG | - | chr5_4:7307037-7307056 | None:intergenic | 25.0% |
| ! | ATTTCAATGGAAATGAGATA+AGG | + | chr5_4:7307097-7307116 | Msa0834300:intron | 25.0% |
| ! | TTTCAATGGAAATGAGATAA+GGG | + | chr5_4:7307098-7307117 | Msa0834300:intron | 25.0% |
| ! | GACAAAAATGAATCAAATTG+TGG | - | chr5_4:7307144-7307163 | None:intergenic | 25.0% |
| ! | CAAGAAGATATTGATACAAA+AGG | - | chr5_4:7307596-7307615 | None:intergenic | 25.0% |
| !! | GAATATTGTTTGTTAGAACT+TGG | + | chr5_4:7307745-7307764 | Msa0834300:intron | 25.0% |
| !!! | TGATGATTTTGATGATCAAA+GGG | + | chr5_4:7307950-7307969 | Msa0834300:CDS | 25.0% |
| ! | TTCATAACTGATTAAAGCAT+TGG | + | chr5_4:7308231-7308250 | Msa0834300:intron | 25.0% |
| !! | TCATAACTGATTAAAGCATT+GGG | + | chr5_4:7308232-7308251 | Msa0834300:intron | 25.0% |
| !!! | ACATGTTCATAAGTTGTTTT+CGG | - | chr5_4:7308503-7308522 | None:intergenic | 25.0% |
| ! | TGTTAATTAGGTTTATCTCA+TGG | - | chr5_4:7308579-7308598 | None:intergenic | 25.0% |
| ! | AGCGTATTCAAATGTTAATT+AGG | - | chr5_4:7308591-7308610 | None:intergenic | 25.0% |
| !!! | ATTCTTTTTTTCATTGTCGA+TGG | - | chr5_4:7308653-7308672 | None:intergenic | 25.0% |
| ! | TATATCAACCACATTTATTG+CGG | + | chr5_4:7308715-7308734 | Msa0834300:intron | 25.0% |
| ! | TCATGAAAACATGTTATCTA+AGG | - | chr5_4:7308791-7308810 | None:intergenic | 25.0% |
| ! | TTCTTTCACTAGAATAAACA+TGG | + | chr5_4:7309347-7309366 | Msa0834300:intron | 25.0% |
| !!! | TTATTTTTTTGCGTGTAACT+TGG | + | chr5_4:7309442-7309461 | Msa0834300:intron | 25.0% |
| ! | TAAACTATGAAGAATTTACG+AGG | + | chr5_4:7309778-7309797 | Msa0834300:CDS | 25.0% |
| !! | ATCATACATGAGACTTTTTA+AGG | + | chr5_4:7309930-7309949 | Msa0834300:intron | 25.0% |
| !! | TCATACATGAGACTTTTTAA+GGG | + | chr5_4:7309931-7309950 | Msa0834300:intron | 25.0% |
| ! | TAACAAATCGTAAATCTTGA+TGG | - | chr5_4:7309974-7309993 | None:intergenic | 25.0% |
| ! | TATTAATTGTCCAACTTTGA+AGG | - | chr5_4:7310476-7310495 | None:intergenic | 25.0% |
| ! | ACAATGATTCATTATCTATG+CGG | + | chr5_4:7310507-7310526 | Msa0834300:intron | 25.0% |
| !! | TCTTTGTGATAATTCTTTTG+GGG | - | chr5_4:7310731-7310750 | None:intergenic | 25.0% |
| !! | GTCTTTGTGATAATTCTTTT+GGG | - | chr5_4:7310732-7310751 | None:intergenic | 25.0% |
| !! | AGTCTTTGTGATAATTCTTT+TGG | - | chr5_4:7310733-7310752 | None:intergenic | 25.0% |
| !!! | AGATTCTTTTAACTTTGTTG+AGG | + | chr5_4:7310809-7310828 | Msa0834300:CDS | 25.0% |
| !!! | TGGATGGAATATTTTTGTAT+AGG | + | chr5_4:7311096-7311115 | Msa0834300:three_prime_UTR | 25.0% |
| !!! | TGGAATATTTTTGTATAGGT+TGG | + | chr5_4:7311100-7311119 | Msa0834300:three_prime_UTR | 25.0% |
| TTGGAGAAAAATCTGAGAAA+TGG | - | chr5_4:7306093-7306112 | None:intergenic | 30.0% | |
| !!! | TTGTTCATTTTTCTGAGACA+TGG | + | chr5_4:7306434-7306453 | Msa0834300:exon | 30.0% |
| !!! | TGTTCATTTTTCTGAGACAT+GGG | + | chr5_4:7306435-7306454 | Msa0834300:exon | 30.0% |
| !! | TTTTTGTTTCACTGTGTTTC+TGG | + | chr5_4:7306724-7306743 | Msa0834300:intron | 30.0% |
| CTAACTGGAAAAAGATTAAG+GGG | + | chr5_4:7306790-7306809 | Msa0834300:intron | 30.0% | |
| ! | TTTGTTGCATTGATAGGAAA+TGG | + | chr5_4:7306831-7306850 | Msa0834300:intron | 30.0% |
| CGCATTTCAACGTAATATAA+AGG | - | chr5_4:7306894-7306913 | None:intergenic | 30.0% | |
| ! | TCTTCGCATAGTTTAAAATC+CGG | - | chr5_4:7307011-7307030 | None:intergenic | 30.0% |
| TTCAATGGAAATGAGATAAG+GGG | + | chr5_4:7307099-7307118 | Msa0834300:intron | 30.0% | |
| TACAATACTGATCACCTTAA+TGG | + | chr5_4:7307346-7307365 | Msa0834300:intron | 30.0% | |
| TAGTAGAAGTAGTTCCATTA+AGG | - | chr5_4:7307363-7307382 | None:intergenic | 30.0% | |
| ATGTTCAATACTCTTAGACT+TGG | + | chr5_4:7307472-7307491 | Msa0834300:intron | 30.0% | |
| TAGTTCAATACTTGATTGTG+AGG | - | chr5_4:7307620-7307639 | None:intergenic | 30.0% | |
| !! | CACAATCAAGTATTGAACTA+TGG | + | chr5_4:7307620-7307639 | Msa0834300:intron | 30.0% |
| ATCATACGTAACTGTTTAAG+TGG | + | chr5_4:7307653-7307672 | Msa0834300:intron | 30.0% | |
| ! | CTTTTATATGCTTTGCGATT+TGG | + | chr5_4:7307706-7307725 | Msa0834300:intron | 30.0% |
| ! | TATTGTTTGTTAGAACTTGG+CGG | + | chr5_4:7307748-7307767 | Msa0834300:intron | 30.0% |
| AACAAAGATGTATCTCAGAT+TGG | - | chr5_4:7307779-7307798 | None:intergenic | 30.0% | |
| !! | CTGATGATTTTGATGATCAA+AGG | + | chr5_4:7307949-7307968 | Msa0834300:CDS | 30.0% |
| AACCACTATAATGTAGTATC+TGG | + | chr5_4:7308038-7308057 | Msa0834300:CDS | 30.0% | |
| ! | TATCTTCATCAAAAGCCTTT+TGG | - | chr5_4:7308094-7308113 | None:intergenic | 30.0% |
| ATGTTAGCACAGTCAAAAAA+TGG | + | chr5_4:7308281-7308300 | Msa0834300:intron | 30.0% | |
| ! | ATATCTGAGTTTTGCTTCTA+GGG | + | chr5_4:7308380-7308399 | Msa0834300:intron | 30.0% |
| TTATATCAGTGTTTGGACTT+TGG | - | chr5_4:7308547-7308566 | None:intergenic | 30.0% | |
| TTGATATAACAAGAGCTTCA+TGG | - | chr5_4:7308703-7308722 | None:intergenic | 30.0% | |
| CATATATGTAAACACGGAAT+TGG | - | chr5_4:7308818-7308837 | None:intergenic | 30.0% | |
| GTAAAGAATTTCTTGATCAG+AGG | - | chr5_4:7308869-7308888 | None:intergenic | 30.0% | |
| TGTAATCTGTACATCAAAAC+TGG | + | chr5_4:7308909-7308928 | Msa0834300:intron | 30.0% | |
| ! | TGTTTTTCTGAATCTTCTGA+TGG | + | chr5_4:7309134-7309153 | Msa0834300:CDS | 30.0% |
| ! | GTTTTTCTGAATCTTCTGAT+GGG | + | chr5_4:7309135-7309154 | Msa0834300:CDS | 30.0% |
| ! | TTTTTCTGAATCTTCTGATG+GGG | + | chr5_4:7309136-7309155 | Msa0834300:CDS | 30.0% |
| AGCTCTCTTTCATTTGATAA+TGG | + | chr5_4:7309266-7309285 | Msa0834300:CDS | 30.0% | |
| TATTCTCCTAGTTGAATTCT+TGG | + | chr5_4:7309641-7309660 | Msa0834300:intron | 30.0% | |
| ATTATTGAAGTTTCTTCCTG+TGG | + | chr5_4:7309827-7309846 | Msa0834300:CDS | 30.0% | |
| !! | CATACATGAGACTTTTTAAG+GGG | + | chr5_4:7309932-7309951 | Msa0834300:intron | 30.0% |
| TAAAAGTAGGGCTGAAAAAT+CGG | + | chr5_4:7310292-7310311 | Msa0834300:CDS | 30.0% | |
| ! | TTTAAGATTTAACGCTAACC+TGG | - | chr5_4:7310398-7310417 | None:intergenic | 30.0% |
| TATCATAAGACCTTCCAATT+AGG | + | chr5_4:7310442-7310461 | Msa0834300:intron | 30.0% | |
| TACTCCTTATGATTTAACTG+AGG | + | chr5_4:7310650-7310669 | Msa0834300:intron | 30.0% | |
| GATTCCTCAGTTAAATCATA+AGG | - | chr5_4:7310657-7310676 | None:intergenic | 30.0% | |
| TGCGGAAAAGAATTATTAGA+AGG | - | chr5_4:7310867-7310886 | None:intergenic | 30.0% | |
| ! | TTCTAATAATTCTTTTCCGC+AGG | + | chr5_4:7310866-7310885 | Msa0834300:CDS | 30.0% |
| CAAAAAGAAGGTTGCAAATA+AGG | - | chr5_4:7311049-7311068 | None:intergenic | 30.0% | |
| ! | CTTATTTGCAACCTTCTTTT+TGG | + | chr5_4:7311047-7311066 | Msa0834300:three_prime_UTR | 30.0% |
| ! | GATTGTCAAGGATTTGAAAT+TGG | + | chr5_4:7311076-7311095 | Msa0834300:three_prime_UTR | 30.0% |
| ATGGTTGTGAAAAGTGGAAA+TGG | - | chr5_4:7306074-7306093 | None:intergenic | 35.0% | |
| TGAGAAATGGTTGTGAAAAG+TGG | - | chr5_4:7306080-7306099 | None:intergenic | 35.0% | |
| ! | AATGGAAGAGAAAAGAGCAT+TGG | - | chr5_4:7306112-7306131 | None:intergenic | 35.0% |
| ! | AATGCTCTTTTCTCTTCCAT+TGG | + | chr5_4:7306111-7306130 | Msa0834300:five_prime_UTR | 35.0% |
| TGGGAATTTGTACAATCCAA+TGG | - | chr5_4:7306130-7306149 | None:intergenic | 35.0% | |
| GCTTGTTCTGTGTAATACTA+TGG | + | chr5_4:7306605-7306624 | Msa0834300:intron | 35.0% | |
| ! | GCATTTGGAATTGAAAGTTG+TGG | + | chr5_4:7306670-7306689 | Msa0834300:intron | 35.0% |
| ! | TCTGAGACAATGTAACTAAC+TGG | + | chr5_4:7306775-7306794 | Msa0834300:intron | 35.0% |
| ! | TTAAGGGGAGTTGATTGAAT+TGG | + | chr5_4:7306805-7306824 | Msa0834300:intron | 35.0% |
| !! | TGGTGATTTGTTGCATTGAT+AGG | + | chr5_4:7306825-7306844 | Msa0834300:intron | 35.0% |
| GAAATGAGATAAGGGGATTA+TGG | + | chr5_4:7307106-7307125 | Msa0834300:intron | 35.0% | |
| ACAATTTCTCAATGTGTCAG+AGG | + | chr5_4:7307209-7307228 | Msa0834300:intron | 35.0% | |
| TTTCATTAGCCAGAAAGCAA+TGG | - | chr5_4:7307278-7307297 | None:intergenic | 35.0% | |
| CTAAGAACATATGTATCCTG+TGG | - | chr5_4:7307543-7307562 | None:intergenic | 35.0% | |
| !! | TGTTTAAGTGGTTTGTTGTG+CGG | + | chr5_4:7307665-7307684 | Msa0834300:intron | 35.0% |
| ! | TGCTTTGCGATTTGGATTAT+CGG | + | chr5_4:7307714-7307733 | Msa0834300:intron | 35.0% |
| ATTACACACCTTTACATGCT+CGG | + | chr5_4:7307919-7307938 | Msa0834300:CDS | 35.0% | |
| ! | AAGAAGTGAACTTGCTCAAA+CGG | + | chr5_4:7308009-7308028 | Msa0834300:CDS | 35.0% |
| CTCCAGATACTACATTATAG+TGG | - | chr5_4:7308043-7308062 | None:intergenic | 35.0% | |
| CACTATAATGTAGTATCTGG+AGG | + | chr5_4:7308041-7308060 | Msa0834300:CDS | 35.0% | |
| ATGAGTAATCGATCAAGTTC+AGG | + | chr5_4:7308113-7308132 | Msa0834300:CDS | 35.0% | |
| ! | CAGGTTTGTTCTGATTTCAT+TGG | + | chr5_4:7308198-7308217 | Msa0834300:intron | 35.0% |
| ! | AAGAAATTGTGCTGCTATTC+AGG | - | chr5_4:7308336-7308355 | None:intergenic | 35.0% |
| ! | GATATCTGAGTTTTGCTTCT+AGG | + | chr5_4:7308379-7308398 | Msa0834300:intron | 35.0% |
| CAAGCACTTATATCAGTGTT+TGG | - | chr5_4:7308554-7308573 | None:intergenic | 35.0% | |
| AGAACTTTCCGCAATAAATG+TGG | - | chr5_4:7308726-7308745 | None:intergenic | 35.0% | |
| !!! | ACACATGTCCTCTTTTTTGA+AGG | - | chr5_4:7309038-7309057 | None:intergenic | 35.0% |
| TCAAAAAAGAGGACATGTGT+TGG | + | chr5_4:7309038-7309057 | Msa0834300:CDS | 35.0% | |
| ! | TTATGAAAGTGAAGCACCAA+TGG | + | chr5_4:7309166-7309185 | Msa0834300:CDS | 35.0% |
| AAGAATATGCGTCACTCATT+GGG | - | chr5_4:7309298-7309317 | None:intergenic | 35.0% | |
| TAAGAATATGCGTCACTCAT+TGG | - | chr5_4:7309299-7309318 | None:intergenic | 35.0% | |
| AGTGACGCATATTCTTATTC+TGG | + | chr5_4:7309302-7309321 | Msa0834300:CDS | 35.0% | |
| !! | GAAAGCTTGCCTTTTAAGAA+CGG | - | chr5_4:7309330-7309349 | None:intergenic | 35.0% |
| ATACTGCTAAACTTCCTGAT+GGG | + | chr5_4:7309853-7309872 | Msa0834300:CDS | 35.0% | |
| ATGAGTTGTCAAAGTCGAAA+TGG | + | chr5_4:7310149-7310168 | Msa0834300:CDS | 35.0% | |
| TGAGTTGTCAAAGTCGAAAT+GGG | + | chr5_4:7310150-7310169 | Msa0834300:CDS | 35.0% | |
| !! | CTACTTTTACATCTCTGCAT+CGG | - | chr5_4:7310281-7310300 | None:intergenic | 35.0% |
| GATGCAGAGATGTAAAAGTA+GGG | + | chr5_4:7310280-7310299 | Msa0834300:intron | 35.0% | |
| TCTCTTCACATTTGCAACAT+TGG | - | chr5_4:7310348-7310367 | None:intergenic | 35.0% | |
| TGAAGGAGTCATATCCTAAT+TGG | - | chr5_4:7310459-7310478 | None:intergenic | 35.0% | |
| CAGAGATGAAGACAATAATG+AGG | + | chr5_4:7310703-7310722 | Msa0834300:intron | 35.0% | |
| !! | CCTTGTAATGTGTTGCTTAA+TGG | - | chr5_4:7310971-7310990 | None:intergenic | 35.0% |
| CCATTAAGCAACACATTACA+AGG | + | chr5_4:7310968-7310987 | Msa0834300:exon | 35.0% | |
| CACATTACAAGGTTATACTC+TGG | + | chr5_4:7310979-7310998 | Msa0834300:three_prime_UTR | 35.0% | |
| ! | GTCAAGGATTTGAAATTGGA+TGG | + | chr5_4:7311080-7311099 | Msa0834300:three_prime_UTR | 35.0% |
| AGATAGCATGAAATGAGAAG+CGG | + | chr5_4:7311135-7311154 | Msa0834300:three_prime_UTR | 35.0% | |
| !! | TTCTGAGACATGGGTAAACA+AGG | + | chr5_4:7306444-7306463 | Msa0834300:exon | 40.0% |
| AACCGCAATTATGACAGCAT+CGG | - | chr5_4:7306928-7306947 | None:intergenic | 40.0% | |
| CAACTGCGAACGCAATATAA+CGG | - | chr5_4:7306978-7306997 | None:intergenic | 40.0% | |
| TTATATTGCGTTCGCAGTTG+CGG | + | chr5_4:7306978-7306997 | Msa0834300:intron | 40.0% | |
| ATGGAGCAAGACATGATTGA+GGG | - | chr5_4:7307259-7307278 | None:intergenic | 40.0% | |
| AATGGAGCAAGACATGATTG+AGG | - | chr5_4:7307260-7307279 | None:intergenic | 40.0% | |
| ! | GCAATCAATCTTTTCACCAC+AGG | + | chr5_4:7307524-7307543 | Msa0834300:intron | 40.0% |
| ! | TGACAATTGAGCATTGCAAC+AGG | + | chr5_4:7307807-7307826 | Msa0834300:intron | 40.0% |
| !! | TTGCATAGTATTGGCTTCTC+TGG | - | chr5_4:7307858-7307877 | None:intergenic | 40.0% |
| CCACATGCATTGCATAGTAT+TGG | - | chr5_4:7307867-7307886 | None:intergenic | 40.0% | |
| CCAATACTATGCAATGCATG+TGG | + | chr5_4:7307864-7307883 | Msa0834300:CDS | 40.0% | |
| TTACACACCTTTACATGCTC+GGG | + | chr5_4:7307920-7307939 | Msa0834300:CDS | 40.0% | |
| ! | TTGATGATCAAAGGGCTTCA+AGG | + | chr5_4:7307958-7307977 | Msa0834300:CDS | 40.0% |
| ACTTGCATCTGATTACAACC+AGG | + | chr5_4:7308064-7308083 | Msa0834300:CDS | 40.0% | |
| CTTGCATCTGATTACAACCA+GGG | + | chr5_4:7308065-7308084 | Msa0834300:CDS | 40.0% | |
| TTACAACCAGGGATTCCAAA+AGG | + | chr5_4:7308076-7308095 | Msa0834300:CDS | 40.0% | |
| ACAGATGCTAGTGATCTAAC+AGG | + | chr5_4:7308179-7308198 | Msa0834300:CDS | 40.0% | |
| AGTGCTCATTCGCTATTCTA+AGG | + | chr5_4:7308428-7308447 | Msa0834300:intron | 40.0% | |
| GATCCTATGCGTGATTACAT+GGG | - | chr5_4:7308624-7308643 | None:intergenic | 40.0% | |
| AGATCCTATGCGTGATTACA+TGG | - | chr5_4:7308625-7308644 | None:intergenic | 40.0% | |
| !!! | CTCTTTTTTGAAGGCACTGT+GGG | - | chr5_4:7309029-7309048 | None:intergenic | 40.0% |
| !! | GACATGGAAGTGTTCTCATT+AGG | + | chr5_4:7309204-7309223 | Msa0834300:CDS | 40.0% |
| ! | CTGGAAAGAGTACAAATCCT+TGG | + | chr5_4:7309573-7309592 | Msa0834300:intron | 40.0% |
| AGGGTGAATCATGATTTCCA+AGG | - | chr5_4:7309593-7309612 | None:intergenic | 40.0% | |
| CAACTGCCAAGAATTCAACT+AGG | - | chr5_4:7309650-7309669 | None:intergenic | 40.0% | |
| CTAGTTGAATTCTTGGCAGT+TGG | + | chr5_4:7309648-7309667 | Msa0834300:intron | 40.0% | |
| AGTTTAGCAGTATCAACCAC+AGG | - | chr5_4:7309846-7309865 | None:intergenic | 40.0% | |
| GATACTGCTAAACTTCCTGA+TGG | + | chr5_4:7309852-7309871 | Msa0834300:CDS | 40.0% | |
| GAGTAGAATTCTAACCCATC+AGG | - | chr5_4:7309870-7309889 | None:intergenic | 40.0% | |
| !! | TTGTTGTTTGTGCAGCCTTA+AGG | + | chr5_4:7309994-7310013 | Msa0834300:intron | 40.0% |
| TTTCAGCAGCTTCTTGCAAA+AGG | + | chr5_4:7310058-7310077 | Msa0834300:CDS | 40.0% | |
| ATCCGGCAAAGAGATATCAA+AGG | - | chr5_4:7310086-7310105 | None:intergenic | 40.0% | |
| !! | CAGTCTTCAGGTTTTACATC+CGG | - | chr5_4:7310103-7310122 | None:intergenic | 40.0% |
| GGTGGAACACTATCATAACA+AGG | + | chr5_4:7310171-7310190 | Msa0834300:CDS | 40.0% | |
| CGATGCAGAGATGTAAAAGT+AGG | + | chr5_4:7310279-7310298 | Msa0834300:intron | 40.0% | |
| AGCAGAAATCAGAACTTTCC+AGG | + | chr5_4:7310377-7310396 | Msa0834300:CDS | 40.0% | |
| GGAGTCATATCCTAATTGGA+AGG | - | chr5_4:7310455-7310474 | None:intergenic | 40.0% | |
| GGATATGACTCCTTCAAAGT+TGG | + | chr5_4:7310463-7310482 | Msa0834300:intron | 40.0% | |
| ! | GGCAAAGGAAATAGGCTTTT+TGG | - | chr5_4:7310765-7310784 | None:intergenic | 40.0% |
| GAGCACCAAAGTATGAAGTT+GGG | - | chr5_4:7310905-7310924 | None:intergenic | 40.0% | |
| TGAGCACCAAAGTATGAAGT+TGG | - | chr5_4:7310906-7310925 | None:intergenic | 40.0% | |
| CAATCCAAGCTCCAAAAAGA+AGG | - | chr5_4:7311061-7311080 | None:intergenic | 40.0% | |
| !!! | TTTTGGAGCTTGGATTGTCA+AGG | + | chr5_4:7311064-7311083 | Msa0834300:three_prime_UTR | 40.0% |
| CACTTGTAACTCCACAGTGA+TGG | - | chr5_4:7306476-7306495 | None:intergenic | 45.0% | |
| AGCCGATGCTGTCATAATTG+CGG | + | chr5_4:7306923-7306942 | Msa0834300:intron | 45.0% | |
| ! | TTGCGGTTGTGATGATGCTA+TGG | + | chr5_4:7306940-7306959 | Msa0834300:intron | 45.0% |
| CTCAATGTGTCAGAGGATCT+TGG | + | chr5_4:7307216-7307235 | Msa0834300:intron | 45.0% | |
| TGTCTTGCTCCATTGCTTTC+TGG | + | chr5_4:7307266-7307285 | Msa0834300:intron | 45.0% | |
| !! | CATAGTATTGGCTTCTCTGG+TGG | - | chr5_4:7307855-7307874 | None:intergenic | 45.0% |
| TATGCAATGCATGTGGTTCG+CGG | + | chr5_4:7307871-7307890 | Msa0834300:CDS | 45.0% | |
| !!! | CAAAAGCCTTTTGGAATCCC+TGG | - | chr5_4:7308085-7308104 | None:intergenic | 45.0% |
| ACCAAATTGTGCGCAGCTTT+CGG | - | chr5_4:7308156-7308175 | None:intergenic | 45.0% | |
| !!! | CCTCTTTTTTGAAGGCACTG+TGG | - | chr5_4:7309030-7309049 | None:intergenic | 45.0% |
| CCACAGTGCCTTCAAAAAAG+AGG | + | chr5_4:7309027-7309046 | Msa0834300:CDS | 45.0% | |
| GTGAGCTTCTCAACAGAAGA+TGG | - | chr5_4:7309077-7309096 | None:intergenic | 45.0% | |
| ATTCTGGCGCCGTTCTTAAA+AGG | + | chr5_4:7309318-7309337 | Msa0834300:intron | 45.0% | |
| AGAAGAGACAAAGTGCGATG+CGG | + | chr5_4:7309507-7309526 | Msa0834300:intron | 45.0% | |
| TTTCAGTGACAAGTCTCAGC+TGG | + | chr5_4:7309554-7309573 | Msa0834300:intron | 45.0% | |
| TGCAGCCTTAAGGTCATGTT+CGG | + | chr5_4:7310004-7310023 | Msa0834300:intron | 45.0% | |
| AGCTACCGAACATGACCTTA+AGG | - | chr5_4:7310012-7310031 | None:intergenic | 45.0% | |
| GTTCGGTAGCTCTCAATTCA+AGG | + | chr5_4:7310021-7310040 | Msa0834300:CDS | 45.0% | |
| CGCCTTTGATATCTCTTTGC+CGG | + | chr5_4:7310081-7310100 | Msa0834300:CDS | 45.0% | |
| TTCAAAGTCTCGCAGTCTTC+AGG | - | chr5_4:7310115-7310134 | None:intergenic | 45.0% | |
| GTTGTCAAAGTCGAAATGGG+TGG | + | chr5_4:7310153-7310172 | Msa0834300:CDS | 45.0% | |
| ! | ACATCTCTGCATCGGTAGAA+GGG | - | chr5_4:7310273-7310292 | None:intergenic | 45.0% |
| ! | TACATCTCTGCATCGGTAGA+AGG | - | chr5_4:7310274-7310293 | None:intergenic | 45.0% |
| GCTGAAAAATCGGATGTTCC+AGG | + | chr5_4:7310302-7310321 | Msa0834300:CDS | 45.0% | |
| CATCAGGAGGCAAAGGAAAT+AGG | - | chr5_4:7310773-7310792 | None:intergenic | 45.0% | |
| CTGCACCCAACTTCATACTT+TGG | + | chr5_4:7310897-7310916 | Msa0834300:CDS | 45.0% | |
| !!! | GCAACCTTCTTTTTGGAGCT+TGG | + | chr5_4:7311054-7311073 | Msa0834300:three_prime_UTR | 45.0% |
| !! | ATTACAATAATTAATTAAAA+TGG | - | chr5_4:7306330-7306349 | None:intergenic | 5.0% |
| !!! | TTTAATTTTAATTTATTGTT+TGG | + | chr5_4:7308962-7308981 | Msa0834300:intron | 5.0% |
| GTAACTCCACAGTGATGGCA+AGG | - | chr5_4:7306471-7306490 | None:intergenic | 50.0% | |
| TTGCAACAGGCACACCACTT+TGG | + | chr5_4:7307820-7307839 | Msa0834300:intron | 50.0% | |
| GTTTCAGCCCGAGCATGTAA+AGG | - | chr5_4:7307930-7307949 | None:intergenic | 50.0% | |
| TCCGAAAGCTGCGCACAATT+TGG | + | chr5_4:7308152-7308171 | Msa0834300:CDS | 50.0% | |
| GAAAGCTGCGCACAATTTGG+TGG | + | chr5_4:7308155-7308174 | Msa0834300:CDS | 50.0% | |
| TGCGTGATTACATGGGCGTT+TGG | - | chr5_4:7308617-7308636 | None:intergenic | 50.0% | |
| ACGCCCATGTAATCACGCAT+AGG | + | chr5_4:7308618-7308637 | Msa0834300:intron | 50.0% | |
| ! | TTTAGGACCTGCTCAGTCAG+TGG | + | chr5_4:7308989-7309008 | Msa0834300:intron | 50.0% |
| !!! | TTTTGAAGGCACTGTGGGAG+TGG | - | chr5_4:7309024-7309043 | None:intergenic | 50.0% |
| CCTATCTCGACAGAGACCAT+TGG | - | chr5_4:7309185-7309204 | None:intergenic | 50.0% | |
| CCAATGGTCTCTGTCGAGAT+AGG | + | chr5_4:7309182-7309201 | Msa0834300:CDS | 50.0% | |
| GTCTCTGTCGAGATAGGACA+TGG | + | chr5_4:7309188-7309207 | Msa0834300:CDS | 50.0% | |
| TCGTCGCGAGCTACATAACT+AGG | - | chr5_4:7309233-7309252 | None:intergenic | 50.0% | |
| GATGCTATACCAGCAGATCC+TGG | - | chr5_4:7310323-7310342 | None:intergenic | 50.0% | |
| AAGTGTGAGCTTGCATCAGG+AGG | - | chr5_4:7310786-7310805 | None:intergenic | 50.0% | |
| AGCAAGTGTGAGCTTGCATC+AGG | - | chr5_4:7310789-7310808 | None:intergenic | 50.0% | |
| TGCTGAGCTACTACTAGTGC+TGG | - | chr5_4:7310931-7310950 | None:intergenic | 50.0% | |
| CAAGGACCTTGCCATCACTG+TGG | + | chr5_4:7306462-7306481 | Msa0834300:CDS | 55.0% | |
| GCACACCACTTTGGCGCAAT+GGG | + | chr5_4:7307829-7307848 | Msa0834300:CDS | 55.0% | |
| ACCTGCTCAGTCAGTGGTCT+GGG | + | chr5_4:7308995-7309014 | Msa0834300:CDS | 55.0% | |
| TCGGATGTTCCAGGATCTGC+TGG | + | chr5_4:7310311-7310330 | Msa0834300:CDS | 55.0% | |
| GAGCTTGCATCAGGAGGCAA+AGG | - | chr5_4:7310780-7310799 | None:intergenic | 55.0% | |
| TGCGTTCGCAGTTGCGGTTG+TGG | + | chr5_4:7306984-7307003 | Msa0834300:intron | 60.0% | |
| TCGCAGTTGCGGTTGTGGAC+CGG | + | chr5_4:7306989-7307008 | Msa0834300:intron | 60.0% | |
| GGCACACCACTTTGGCGCAA+TGG | + | chr5_4:7307828-7307847 | Msa0834300:intron | 60.0% | |
| GCAATGCATGTGGTTCGCGG+TGG | + | chr5_4:7307874-7307893 | Msa0834300:CDS | 60.0% | |
| ATGCATGTGGTTCGCGGTGG+AGG | + | chr5_4:7307877-7307896 | Msa0834300:CDS | 60.0% | |
| TGGTTCGCGGTGGAGGACAA+AGG | + | chr5_4:7307884-7307903 | Msa0834300:CDS | 60.0% | |
| GGTTCGCGGTGGAGGACAAA+GGG | + | chr5_4:7307885-7307904 | Msa0834300:CDS | 60.0% | |
| GACCTGCTCAGTCAGTGGTC+TGG | + | chr5_4:7308994-7309013 | Msa0834300:CDS | 60.0% | |
| ! | TCCCAGACCACTGACTGAGC+AGG | - | chr5_4:7308999-7309018 | None:intergenic | 60.0% |
| AGCTCGCGACGAAGAGTCTG+AGG | + | chr5_4:7309241-7309260 | Msa0834300:CDS | 60.0% | |
| GGGTGCAGAAGTTCTGCCTG+CGG | - | chr5_4:7310885-7310904 | None:intergenic | 60.0% | |
| GGTGGCCCATTGCGCCAAAG+TGG | - | chr5_4:7307837-7307856 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7306026 | 7311189 | 7306026 | ID=Msa0834300;Name=Msa0834300 |
| chr5_4 | mRNA | 7306026 | 7311189 | 7306026 | ID=Msa0834300-mRNA-1;Parent=Msa0834300;Name=Msa0834300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=427|0.83|0.85|1|1|1|7|215|471 |
| chr5_4 | exon | 7306026 | 7306492 | 7306026 | ID=Msa0834300-mRNA-1:exon:3247;Parent=Msa0834300-mRNA-1 |
| chr5_4 | exon | 7307829 | 7308200 | 7307829 | ID=Msa0834300-mRNA-1:exon:3248;Parent=Msa0834300-mRNA-1 |
| chr5_4 | exon | 7308994 | 7309328 | 7308994 | ID=Msa0834300-mRNA-1:exon:3249;Parent=Msa0834300-mRNA-1 |
| chr5_4 | exon | 7309771 | 7309874 | 7309771 | ID=Msa0834300-mRNA-1:exon:3250;Parent=Msa0834300-mRNA-1 |
| chr5_4 | exon | 7310009 | 7310192 | 7310009 | ID=Msa0834300-mRNA-1:exon:3251;Parent=Msa0834300-mRNA-1 |
| chr5_4 | exon | 7310287 | 7310398 | 7310287 | ID=Msa0834300-mRNA-1:exon:3252;Parent=Msa0834300-mRNA-1 |
| chr5_4 | exon | 7310706 | 7311189 | 7310706 | ID=Msa0834300-mRNA-1:exon:3253;Parent=Msa0834300-mRNA-1 |
| chr5_4 | five_prime_UTR | 7306026 | 7306452 | 7306026 | ID=Msa0834300-mRNA-1:five_prime_utr;Parent=Msa0834300-mRNA-1 |
| chr5_4 | CDS | 7306453 | 7306492 | 7306453 | ID=Msa0834300-mRNA-1:cds;Parent=Msa0834300-mRNA-1 |
| chr5_4 | CDS | 7307829 | 7308200 | 7307829 | ID=Msa0834300-mRNA-1:cds;Parent=Msa0834300-mRNA-1 |
| chr5_4 | CDS | 7308994 | 7309328 | 7308994 | ID=Msa0834300-mRNA-1:cds;Parent=Msa0834300-mRNA-1 |
| chr5_4 | CDS | 7309771 | 7309874 | 7309771 | ID=Msa0834300-mRNA-1:cds;Parent=Msa0834300-mRNA-1 |
| chr5_4 | CDS | 7310009 | 7310192 | 7310009 | ID=Msa0834300-mRNA-1:cds;Parent=Msa0834300-mRNA-1 |
| chr5_4 | CDS | 7310287 | 7310398 | 7310287 | ID=Msa0834300-mRNA-1:cds;Parent=Msa0834300-mRNA-1 |
| chr5_4 | CDS | 7310706 | 7310974 | 7310706 | ID=Msa0834300-mRNA-1:cds;Parent=Msa0834300-mRNA-1 |
| chr5_4 | three_prime_UTR | 7310975 | 7311189 | 7310975 | ID=Msa0834300-mRNA-1:three_prime_utr;Parent=Msa0834300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
