Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834370 | XP_003611395.1 | 52.174 | 161 | 45 | 6 | 1 | 133 | 9 | 165 | 1.92e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834370 | G7JYL9 | 52.174 | 161 | 45 | 6 | 1 | 133 | 9 | 165 | 9.16e-41 | 144 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0834370 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834370 | MtrunA17_Chr5g0399881 | 52.174 | 161 | 45 | 6 | 1 | 133 | 9 | 165 | 1.76e-44 | 144 |
| Msa0834370 | MtrunA17_Chr5g0399861 | 61.789 | 123 | 27 | 4 | 1 | 104 | 9 | 130 | 2.36e-43 | 141 |
| Msa0834370 | MtrunA17_Chr5g0399851 | 62.385 | 109 | 15 | 3 | 21 | 104 | 6 | 113 | 2.12e-38 | 128 |
| Msa0834370 | MtrunA17_Chr4g0070271 | 41.250 | 80 | 36 | 2 | 31 | 104 | 95 | 169 | 1.06e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACACGAGGTTTCAAATT+TGG | 0.114592 | 5_4:+7393060 | Msa0834370:CDS |
| CTACACGAGGTTTCAAATTT+GGG | 0.281158 | 5_4:+7393061 | Msa0834370:CDS |
| GGCTTCACTTCATCGGTTCT+TGG | 0.289096 | 5_4:+7394720 | Msa0834370:CDS |
| CCTCACCCGCTAGGTTGTTA+TGG | 0.290785 | 5_4:+7395841 | Msa0834370:CDS |
| CTCACCCGCTAGGTTGTTAT+GGG | 0.374055 | 5_4:+7395842 | Msa0834370:CDS |
| TCACATTTCACAGAGCAAAA+TGG | 0.375366 | 5_4:+7395928 | Msa0834370:CDS |
| GGGGTGACTCTGAGCAAATC+TGG | 0.380764 | 5_4:-7393402 | None:intergenic |
| TGTTATGGGTGTCTTCATCT+TGG | 0.397737 | 5_4:+7395856 | Msa0834370:CDS |
| GTGTAGCCTCCCTCTTGAAC+TGG | 0.406885 | 5_4:-7395815 | None:intergenic |
| GGATCTTGTTGAAAATTCAT+AGG | 0.408373 | 5_4:-7393028 | None:intergenic |
| CCATGTTAGTGCGGCAAGGC+AGG | 0.427879 | 5_4:-7395886 | None:intergenic |
| TCGAGAGGTAGTAGTTCCTT+TGG | 0.433772 | 5_4:-7393357 | None:intergenic |
| ATTCAGATTTATCAATTACT+AGG | 0.446451 | 5_4:+7394695 | Msa0834370:intron |
| TTTCAAATTTGGGAAAATCC+AGG | 0.458617 | 5_4:+7393071 | Msa0834370:CDS |
| GAAGGCTAATATTACTATCA+AGG | 0.469300 | 5_4:+7393232 | Msa0834370:CDS |
| TTCATCGGTTCTTGGAAAGA+AGG | 0.486928 | 5_4:+7394728 | Msa0834370:CDS |
| CCTGCCTTGCCGCACTAACA+TGG | 0.494470 | 5_4:+7395886 | Msa0834370:CDS |
| ATTGTCATTTGGGCACATCT+AGG | 0.501600 | 5_4:-7393260 | None:intergenic |
| AGATTTATCAATTACTAGGA+AGG | 0.513206 | 5_4:+7394699 | Msa0834370:intron |
| CTAGGAAGGCTTCACTTCAT+CGG | 0.521487 | 5_4:+7394713 | Msa0834370:CDS |
| GTACTATTACAGTGTAATGA+AGG | 0.533748 | 5_4:+7393214 | Msa0834370:intron |
| CCATAACAACCTAGCGGGTG+AGG | 0.536735 | 5_4:-7395841 | None:intergenic |
| TCGGTTCTTGGAAAGAAGGA+TGG | 0.543639 | 5_4:+7394732 | Msa0834370:CDS |
| AAACCTCGTGTAGAAAGAGA+TGG | 0.549602 | 5_4:-7393051 | None:intergenic |
| AACCTCGTGTAGAAAGAGAT+GGG | 0.573061 | 5_4:-7393050 | None:intergenic |
| TCTTGGAAAGAAGGATGGAT+AGG | 0.575095 | 5_4:+7394737 | Msa0834370:CDS |
| GTGGCCATGTTAGTGCGGCA+AGG | 0.581779 | 5_4:-7395890 | None:intergenic |
| ATGGTTTCATCCAGTTCAAG+AGG | 0.584767 | 5_4:+7395805 | Msa0834370:CDS |
| GACACCCATAACAACCTAGC+GGG | 0.593248 | 5_4:-7395846 | None:intergenic |
| GTTATTGCCGTGGTTTCGAG+AGG | 0.604132 | 5_4:-7393372 | None:intergenic |
| TCCCCATCTCTTTCTACACG+AGG | 0.621309 | 5_4:+7393048 | Msa0834370:CDS |
| ACTACTACCTCTCGAAACCA+CGG | 0.636466 | 5_4:+7393365 | Msa0834370:CDS |
| TGGAAGCGTAGTTATTGCCG+TGG | 0.646586 | 5_4:-7393382 | None:intergenic |
| TTTCATCCAGTTCAAGAGGG+AGG | 0.660735 | 5_4:+7395809 | Msa0834370:CDS |
| ACCTCGTGTAGAAAGAGATG+GGG | 0.661970 | 5_4:-7393049 | None:intergenic |
| TGGTTTCATCCAGTTCAAGA+GGG | 0.666202 | 5_4:+7395806 | Msa0834370:CDS |
| TGTGCGTGGCCATGTTAGTG+CGG | 0.704645 | 5_4:-7395895 | None:intergenic |
| GTGACTGATGAAATTGTGCG+TGG | 0.719230 | 5_4:-7395909 | None:intergenic |
| AGACACCCATAACAACCTAG+CGG | 0.783746 | 5_4:-7395847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATGGTAAAAATAAATT+CGG | + | chr5_4:7393482-7393501 | Msa0834370:intron | 10.0% |
| !!! | ATTTAGAAAAAAATAGATTT+TGG | + | chr5_4:7393678-7393697 | Msa0834370:intron | 10.0% |
| !!! | AAATAAAAAAATTGATTCTT+TGG | + | chr5_4:7393793-7393812 | Msa0834370:intron | 10.0% |
| !!! | TTATTTTATTTTTTTTAGTG+GGG | - | chr5_4:7394370-7394389 | None:intergenic | 10.0% |
| !! | AAATCTGAATAAATATTAAA+AGG | - | chr5_4:7394685-7394704 | None:intergenic | 10.0% |
| !! | TTAATAATATATTTATGAGT+GGG | - | chr5_4:7394947-7394966 | None:intergenic | 10.0% |
| !! | TTTAATAATATATTTATGAG+TGG | - | chr5_4:7394948-7394967 | None:intergenic | 10.0% |
| !!! | ATCATAAAAAATTGTCATTT+GGG | - | chr5_4:7393273-7393292 | None:intergenic | 15.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | + | chr5_4:7393273-7393292 | Msa0834370:CDS | 15.0% |
| !!! | TTATTTTTACCATAAATAAC+AGG | - | chr5_4:7393479-7393498 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTTCTAAATACA+AGG | - | chr5_4:7393675-7393694 | None:intergenic | 15.0% |
| !!! | TATTTTATTTTTTTTAGTGG+GGG | - | chr5_4:7394369-7394388 | None:intergenic | 15.0% |
| !! | CATCATAAAAAATTGTCATT+TGG | - | chr5_4:7393274-7393293 | None:intergenic | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | + | chr5_4:7393272-7393291 | Msa0834370:CDS | 20.0% |
| !! | AAATAAATTCGGATATCTAA+TGG | + | chr5_4:7393493-7393512 | Msa0834370:intron | 20.0% |
| !! | AATAAATTCGGATATCTAAT+GGG | + | chr5_4:7393494-7393513 | Msa0834370:intron | 20.0% |
| !!! | TTAAAAAAATCTAAAGCTGT+TGG | + | chr5_4:7393588-7393607 | Msa0834370:intron | 20.0% |
| !!! | TGAAATAGATTTTCATTTTC+AGG | + | chr5_4:7393711-7393730 | Msa0834370:intron | 20.0% |
| !! | TTTCATTAGATTTGAAGATT+TGG | + | chr5_4:7394226-7394245 | Msa0834370:intron | 20.0% |
| !!! | ATTTTATTTTTTTTAGTGGG+GGG | - | chr5_4:7394368-7394387 | None:intergenic | 20.0% |
| !!! | TATACAATTTTACTTAACCA+GGG | - | chr5_4:7394465-7394484 | None:intergenic | 20.0% |
| !!! | ATATACAATTTTACTTAACC+AGG | - | chr5_4:7394466-7394485 | None:intergenic | 20.0% |
| !! | ATTCAGATTTATCAATTACT+AGG | + | chr5_4:7394695-7394714 | Msa0834370:intron | 20.0% |
| !!! | TATGAAATAGACTTTTAAAC+AGG | - | chr5_4:7395231-7395250 | None:intergenic | 20.0% |
| !!! | AAAATCAACATGAGTTTTTA+GGG | + | chr5_4:7395333-7395352 | Msa0834370:intron | 20.0% |
| ! | AGTAGCTAAAAAAATGTTGA+TGG | - | chr5_4:7393131-7393150 | None:intergenic | 25.0% |
| ! | TTCATGATTCATGTTTAACA+TGG | + | chr5_4:7393161-7393180 | Msa0834370:intron | 25.0% |
| !!! | AAATTTCTAGCAAGAAATGA+GGG | - | chr5_4:7393425-7393444 | None:intergenic | 25.0% |
| !!! | AAAATTTCTAGCAAGAAATG+AGG | - | chr5_4:7393426-7393445 | None:intergenic | 25.0% |
| ! | TAGATTTGAAGATTTGGATT+TGG | + | chr5_4:7394232-7394251 | Msa0834370:intron | 25.0% |
| ! | AGATTTGAAGATTTGGATTT+GGG | + | chr5_4:7394233-7394252 | Msa0834370:intron | 25.0% |
| !! | ATACAATTTTACTTAACCAG+GGG | - | chr5_4:7394464-7394483 | None:intergenic | 25.0% |
| ! | ATCTTACCTAAAATATTAGG+GGG | - | chr5_4:7394514-7394533 | None:intergenic | 25.0% |
| ! | GATCTTACCTAAAATATTAG+GGG | - | chr5_4:7394515-7394534 | None:intergenic | 25.0% |
| ! | GGATCTTACCTAAAATATTA+GGG | - | chr5_4:7394516-7394535 | None:intergenic | 25.0% |
| !! | TACCACAATTTAAAACTACA+CGG | + | chr5_4:7394628-7394647 | Msa0834370:intron | 25.0% |
| ! | AGATTTATCAATTACTAGGA+AGG | + | chr5_4:7394699-7394718 | Msa0834370:intron | 25.0% |
| ! | AAAAGAAAAACATGTACAAG+AGG | + | chr5_4:7394968-7394987 | Msa0834370:intron | 25.0% |
| ! | AAAGAAAAACATGTACAAGA+GGG | + | chr5_4:7394969-7394988 | Msa0834370:intron | 25.0% |
| !! | GAAAATCAACATGAGTTTTT+AGG | + | chr5_4:7395332-7395351 | Msa0834370:intron | 25.0% |
| !! | AAAAGCCTATTTAGCTTAAT+AGG | - | chr5_4:7395564-7395583 | None:intergenic | 25.0% |
| !!! | GCTTTTTTCTTAAATAGAGA+AGG | - | chr5_4:7395600-7395619 | None:intergenic | 25.0% |
| !!! | ATGTTGCTTTGTGCTATTTT+TGG | - | chr5_4:7392984-7393003 | None:intergenic | 30.0% |
| GGATCTTGTTGAAAATTCAT+AGG | - | chr5_4:7393031-7393050 | None:intergenic | 30.0% | |
| TTTCAAATTTGGGAAAATCC+AGG | + | chr5_4:7393071-7393090 | Msa0834370:CDS | 30.0% | |
| GTACTATTACAGTGTAATGA+AGG | + | chr5_4:7393214-7393233 | Msa0834370:intron | 30.0% | |
| GAAGGCTAATATTACTATCA+AGG | + | chr5_4:7393232-7393251 | Msa0834370:CDS | 30.0% | |
| TGAAAAAGTCAACGATATCA+TGG | + | chr5_4:7393325-7393344 | Msa0834370:CDS | 30.0% | |
| !! | AATTTCTAGCAAGAAATGAG+GGG | - | chr5_4:7393424-7393443 | None:intergenic | 30.0% |
| !! | TTGTGTAACGGTTTTATGTA+TGG | + | chr5_4:7393882-7393901 | Msa0834370:intron | 30.0% |
| GATTTGAAGATTTGGATTTG+GGG | + | chr5_4:7394234-7394253 | Msa0834370:intron | 30.0% | |
| ! | TACAATTTTACTTAACCAGG+GGG | - | chr5_4:7394463-7394482 | None:intergenic | 30.0% |
| CGGATCTTACCTAAAATATT+AGG | - | chr5_4:7394517-7394536 | None:intergenic | 30.0% | |
| AATAAATAGCATAAGACCAG+TGG | - | chr5_4:7394540-7394559 | None:intergenic | 30.0% | |
| !!! | AACCGTGTAGTTTTAAATTG+TGG | - | chr5_4:7394633-7394652 | None:intergenic | 30.0% |
| AAGAAAAACATGTACAAGAG+GGG | + | chr5_4:7394970-7394989 | Msa0834370:intron | 30.0% | |
| !! | ATTTCTTTTGGCCTTTTTGA+GGG | - | chr5_4:7395008-7395027 | None:intergenic | 30.0% |
| !! | AATTTCTTTTGGCCTTTTTG+AGG | - | chr5_4:7395009-7395028 | None:intergenic | 30.0% |
| CTAAAAAGTAAGTCTATGAC+AGG | - | chr5_4:7395167-7395186 | None:intergenic | 30.0% | |
| !!! | CTGTCATAGACTTACTTTTT+AGG | + | chr5_4:7395165-7395184 | Msa0834370:intron | 30.0% |
| TATTATTCATTAGGCCTAAG+AGG | + | chr5_4:7395514-7395533 | Msa0834370:intron | 30.0% | |
| TTCTTAAATAGAGAAGGTCT+AGG | - | chr5_4:7395594-7395613 | None:intergenic | 30.0% | |
| CTCTATTTAAGAAAAAAGCC+TGG | + | chr5_4:7395601-7395620 | Msa0834370:intron | 30.0% | |
| AGATATTGCTTTGATTGAGA+AGG | - | chr5_4:7395719-7395738 | None:intergenic | 30.0% | |
| TCTACACGAGGTTTCAAATT+TGG | + | chr5_4:7393060-7393079 | Msa0834370:CDS | 35.0% | |
| CTACACGAGGTTTCAAATTT+GGG | + | chr5_4:7393061-7393080 | Msa0834370:CDS | 35.0% | |
| !!! | ATATCGTTGACTTTTTCAGC+TGG | - | chr5_4:7393323-7393342 | None:intergenic | 35.0% |
| TGGTATTTGAGCTGAATTGT+TGG | - | chr5_4:7393450-7393469 | None:intergenic | 35.0% | |
| CCATAAATAACAGGTGTAGA+TGG | - | chr5_4:7393470-7393489 | None:intergenic | 35.0% | |
| ! | CCATCTACACCTGTTATTTA+TGG | + | chr5_4:7393467-7393486 | Msa0834370:intron | 35.0% |
| AAACTGCCCAATATTTGAGA+GGG | + | chr5_4:7393851-7393870 | Msa0834370:intron | 35.0% | |
| TTAAAGTTCAATAGTAGCCG+TGG | - | chr5_4:7394161-7394180 | None:intergenic | 35.0% | |
| ATTGAAATCGTCTTATGCAG+TGG | + | chr5_4:7394308-7394327 | Msa0834370:intron | 35.0% | |
| AAGTGCGTAGTTAAACATCA+AGG | + | chr5_4:7394864-7394883 | Msa0834370:intron | 35.0% | |
| AGAAAAACATGTACAAGAGG+GGG | + | chr5_4:7394971-7394990 | Msa0834370:intron | 35.0% | |
| CTAAACCAAAACCCTCAAAA+AGG | + | chr5_4:7394994-7395013 | Msa0834370:intron | 35.0% | |
| AGAAAAGAAACAGTTCGAGT+CGG | + | chr5_4:7395049-7395068 | Msa0834370:intron | 35.0% | |
| TTCAAAAAAATTGGCAGGTC+AGG | - | chr5_4:7395124-7395143 | None:intergenic | 35.0% | |
| !!! | TGACCTGCCAATTTTTTTGA+AGG | + | chr5_4:7395123-7395142 | Msa0834370:intron | 35.0% |
| GCTTAGGCCTTCAAAAAAAT+TGG | - | chr5_4:7395133-7395152 | None:intergenic | 35.0% | |
| ! | CCTATTTAGCTTAATAGGTC+AGG | - | chr5_4:7395559-7395578 | None:intergenic | 35.0% |
| CCTGACCTATTAAGCTAAAT+AGG | + | chr5_4:7395556-7395575 | Msa0834370:intron | 35.0% | |
| TTTAAGAAAAAAGCCTGGTC+TGG | + | chr5_4:7395606-7395625 | Msa0834370:intron | 35.0% | |
| TTCTCAATAAGTTGCGTTTC+AGG | + | chr5_4:7395781-7395800 | Msa0834370:intron | 35.0% | |
| AATAAGTTGCGTTTCAGGAA+TGG | + | chr5_4:7395786-7395805 | Msa0834370:intron | 35.0% | |
| TCACATTTCACAGAGCAAAA+TGG | + | chr5_4:7395928-7395947 | Msa0834370:CDS | 35.0% | |
| AACCTCGTGTAGAAAGAGAT+GGG | - | chr5_4:7393053-7393072 | None:intergenic | 40.0% | |
| AAACCTCGTGTAGAAAGAGA+TGG | - | chr5_4:7393054-7393073 | None:intergenic | 40.0% | |
| GTAGCAAAAGAACATGTACC+TGG | - | chr5_4:7393092-7393111 | None:intergenic | 40.0% | |
| ! | ATTGTCATTTGGGCACATCT+AGG | - | chr5_4:7393263-7393282 | None:intergenic | 40.0% |
| ! | ATCATGGTCTTTTGCACCAA+AGG | + | chr5_4:7393341-7393360 | Msa0834370:CDS | 40.0% |
| CAAACTGCCCAATATTTGAG+AGG | + | chr5_4:7393850-7393869 | Msa0834370:intron | 40.0% | |
| CAAGCACCCTCTCAAATATT+GGG | - | chr5_4:7393860-7393879 | None:intergenic | 40.0% | |
| ! | TTCGCTCCCCCTAATATTTT+AGG | + | chr5_4:7394505-7394524 | Msa0834370:intron | 40.0% |
| AAATAGCATAAGACCAGTGG+CGG | - | chr5_4:7394537-7394556 | None:intergenic | 40.0% | |
| CTGCAATTACAATGCCATCA+CGG | + | chr5_4:7394601-7394620 | Msa0834370:intron | 40.0% | |
| TGCAATTACAATGCCATCAC+GGG | + | chr5_4:7394602-7394621 | Msa0834370:intron | 40.0% | |
| !! | TTCATCGGTTCTTGGAAAGA+AGG | + | chr5_4:7394728-7394747 | Msa0834370:CDS | 40.0% |
| TCTTGGAAAGAAGGATGGAT+AGG | + | chr5_4:7394737-7394756 | Msa0834370:CDS | 40.0% | |
| CTTAGATCTTCCAACTCTGT+CGG | + | chr5_4:7394892-7394911 | Msa0834370:intron | 40.0% | |
| TTAGATCTTCCAACTCTGTC+GGG | + | chr5_4:7394893-7394912 | Msa0834370:intron | 40.0% | |
| !! | TTTGGCCTTTTTGAGGGTTT+TGG | - | chr5_4:7395002-7395021 | None:intergenic | 40.0% |
| GAAAAGAAACAGTTCGAGTC+GGG | + | chr5_4:7395050-7395069 | Msa0834370:intron | 40.0% | |
| AGGCCTTCAAAAAAATTGGC+AGG | - | chr5_4:7395129-7395148 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGAAGGCCTAAGCC+TGG | + | chr5_4:7395134-7395153 | Msa0834370:intron | 40.0% |
| !!! | TTACTTTTTAGGCCTGAGTC+TGG | + | chr5_4:7395176-7395195 | Msa0834370:intron | 40.0% |
| TGCCATTCAAAAAGCCTCTT+AGG | - | chr5_4:7395531-7395550 | None:intergenic | 40.0% | |
| AAAGAGGTTCCATTGGGAAT+AGG | - | chr5_4:7395679-7395698 | None:intergenic | 40.0% | |
| TGAGAGAAAGAGGTTCCATT+GGG | - | chr5_4:7395685-7395704 | None:intergenic | 40.0% | |
| TTGAGAGAAAGAGGTTCCAT+TGG | - | chr5_4:7395686-7395705 | None:intergenic | 40.0% | |
| TGCTTTGATTGAGAAGGCTT+GGG | - | chr5_4:7395713-7395732 | None:intergenic | 40.0% | |
| TTGCTTTGATTGAGAAGGCT+TGG | - | chr5_4:7395714-7395733 | None:intergenic | 40.0% | |
| TCTCTTTGTAGTACGCTTGA+TGG | + | chr5_4:7395736-7395755 | Msa0834370:intron | 40.0% | |
| TTTGTAGTACGCTTGATGGA+TGG | + | chr5_4:7395740-7395759 | Msa0834370:intron | 40.0% | |
| ATGGTTTCATCCAGTTCAAG+AGG | + | chr5_4:7395805-7395824 | Msa0834370:CDS | 40.0% | |
| TGGTTTCATCCAGTTCAAGA+GGG | + | chr5_4:7395806-7395825 | Msa0834370:CDS | 40.0% | |
| TGTTATGGGTGTCTTCATCT+TGG | + | chr5_4:7395856-7395875 | Msa0834370:CDS | 40.0% | |
| ACCTCGTGTAGAAAGAGATG+GGG | - | chr5_4:7393052-7393071 | None:intergenic | 45.0% | |
| TCGAGAGGTAGTAGTTCCTT+TGG | - | chr5_4:7393360-7393379 | None:intergenic | 45.0% | |
| ACTACTACCTCTCGAAACCA+CGG | + | chr5_4:7393365-7393384 | Msa0834370:CDS | 45.0% | |
| CCAAGCACCCTCTCAAATAT+TGG | - | chr5_4:7393861-7393880 | None:intergenic | 45.0% | |
| !! | CCAATATTTGAGAGGGTGCT+TGG | + | chr5_4:7393858-7393877 | Msa0834370:intron | 45.0% |
| !! | AGGGTGCTTGGTTTGTGTAA+CGG | + | chr5_4:7393870-7393889 | Msa0834370:intron | 45.0% |
| AACGCGTATTGCTACTGTTG+CGG | + | chr5_4:7394068-7394087 | Msa0834370:intron | 45.0% | |
| GGTCAATAGTGTATGCATGG+TGG | - | chr5_4:7394136-7394155 | None:intergenic | 45.0% | |
| GTGGGTCAATAGTGTATGCA+TGG | - | chr5_4:7394139-7394158 | None:intergenic | 45.0% | |
| CATACACTATTGACCCACCA+CGG | + | chr5_4:7394141-7394160 | Msa0834370:intron | 45.0% | |
| AGTTCAATAGTAGCCGTGGT+GGG | - | chr5_4:7394157-7394176 | None:intergenic | 45.0% | |
| AAGTTCAATAGTAGCCGTGG+TGG | - | chr5_4:7394158-7394177 | None:intergenic | 45.0% | |
| GAAATCGTCTTATGCAGTGG+CGG | + | chr5_4:7394311-7394330 | Msa0834370:intron | 45.0% | |
| AGGGGGAACAAAATGAGAGA+GGG | - | chr5_4:7394446-7394465 | None:intergenic | 45.0% | |
| !! | TTTTAGGTAAGATCCGCCAC+TGG | + | chr5_4:7394521-7394540 | Msa0834370:intron | 45.0% |
| AATTGTGGTAGTTCCCGTGA+TGG | - | chr5_4:7394618-7394637 | None:intergenic | 45.0% | |
| CTAGGAAGGCTTCACTTCAT+CGG | + | chr5_4:7394713-7394732 | Msa0834370:CDS | 45.0% | |
| TCGGTTCTTGGAAAGAAGGA+TGG | + | chr5_4:7394732-7394751 | Msa0834370:CDS | 45.0% | |
| AAACAGTTCGAGTCGGGTTA+GGG | + | chr5_4:7395056-7395075 | Msa0834370:intron | 45.0% | |
| ! | GGCCTAAGAGGCTTTTTGAA+TGG | + | chr5_4:7395526-7395545 | Msa0834370:intron | 45.0% |
| ! | GAGGCTTTTTGAATGGCATG+TGG | + | chr5_4:7395533-7395552 | Msa0834370:intron | 45.0% |
| TTGGGCTGATTGAGAGAAAG+AGG | - | chr5_4:7395695-7395714 | None:intergenic | 45.0% | |
| TTTCATCCAGTTCAAGAGGG+AGG | + | chr5_4:7395809-7395828 | Msa0834370:CDS | 45.0% | |
| AGACACCCATAACAACCTAG+CGG | - | chr5_4:7395850-7395869 | None:intergenic | 45.0% | |
| GTGACTGATGAAATTGTGCG+TGG | - | chr5_4:7395912-7395931 | None:intergenic | 45.0% | |
| !!! | TTTATTTTATTTTTTTTAGT+GGG | - | chr5_4:7394371-7394390 | None:intergenic | 5.0% |
| !!! | TTTTATTTTATTTTTTTTAG+TGG | - | chr5_4:7394372-7394391 | None:intergenic | 5.0% |
| !!! | TTATTATTTTTAATTTCTTT+TGG | - | chr5_4:7395020-7395039 | None:intergenic | 5.0% |
| !! | AATAAATAATATTATTCATT+AGG | + | chr5_4:7395505-7395524 | Msa0834370:intron | 5.0% |
| TCCCCATCTCTTTCTACACG+AGG | + | chr5_4:7393048-7393067 | Msa0834370:CDS | 50.0% | |
| GTTATTGCCGTGGTTTCGAG+AGG | - | chr5_4:7393375-7393394 | None:intergenic | 50.0% | |
| ! | TGGAAGCGTAGTTATTGCCG+TGG | - | chr5_4:7393385-7393404 | None:intergenic | 50.0% |
| GGAGCTCTTAAAGAGCCCAT+GGG | + | chr5_4:7394332-7394351 | Msa0834370:intron | 50.0% | |
| CAGGGGGAACAAAATGAGAG+AGG | - | chr5_4:7394447-7394466 | None:intergenic | 50.0% | |
| ! | CTCTCTCATTTTGTTCCCCC+TGG | + | chr5_4:7394445-7394464 | Msa0834370:intron | 50.0% |
| !! | GGCTTCACTTCATCGGTTCT+TGG | + | chr5_4:7394720-7394739 | Msa0834370:CDS | 50.0% |
| CTTAGAAGTCCCGACAGAGT+TGG | - | chr5_4:7394905-7394924 | None:intergenic | 50.0% | |
| GAAACAGTTCGAGTCGGGTT+AGG | + | chr5_4:7395055-7395074 | Msa0834370:intron | 50.0% | |
| GTTAGGGATGGGAATAGGCT+AGG | + | chr5_4:7395072-7395091 | Msa0834370:intron | 50.0% | |
| AGGCCTTACAAAGCCTAGCT+CGG | - | chr5_4:7395098-7395117 | None:intergenic | 50.0% | |
| AAAATTGGCAGGTCAGGCTC+AGG | - | chr5_4:7395118-7395137 | None:intergenic | 50.0% | |
| GTAAGTCTATGACAGGCCGT+AGG | - | chr5_4:7395160-7395179 | None:intergenic | 50.0% | |
| ! | AGTACGCTTGATGGATGGAG+AGG | + | chr5_4:7395745-7395764 | Msa0834370:intron | 50.0% |
| ! | GCTTGATGGATGGAGAGGAT+CGG | + | chr5_4:7395750-7395769 | Msa0834370:intron | 50.0% |
| CTCACCCGCTAGGTTGTTAT+GGG | + | chr5_4:7395842-7395861 | Msa0834370:CDS | 50.0% | |
| GACACCCATAACAACCTAGC+GGG | - | chr5_4:7395849-7395868 | None:intergenic | 50.0% | |
| GGGGTGACTCTGAGCAAATC+TGG | - | chr5_4:7393405-7393424 | None:intergenic | 55.0% | |
| CGGAGCTCTTAAAGAGCCCA+TGG | + | chr5_4:7394331-7394350 | Msa0834370:intron | 55.0% | |
| TAAAGAGCCCATGGGAGCAG+TGG | + | chr5_4:7394340-7394359 | Msa0834370:intron | 55.0% | |
| ! | AGTTCGAGTCGGGTTAGGGA+TGG | + | chr5_4:7395060-7395079 | Msa0834370:intron | 55.0% |
| ! | GTTCGAGTCGGGTTAGGGAT+GGG | + | chr5_4:7395061-7395080 | Msa0834370:intron | 55.0% |
| ! | GTCGGGTTAGGGATGGGAAT+AGG | + | chr5_4:7395067-7395086 | Msa0834370:intron | 55.0% |
| ! | AGGCCGAGCTAGGCTTTGTA+AGG | + | chr5_4:7395092-7395111 | Msa0834370:intron | 55.0% |
| GCTTTCAGAAGGCCAGACTC+AGG | - | chr5_4:7395191-7395210 | None:intergenic | 55.0% | |
| ! | GGCCTTCTGAAAGCCTGATG+CGG | + | chr5_4:7395197-7395216 | Msa0834370:intron | 55.0% |
| TGCCGCATCAGGCTTTCAGA+AGG | - | chr5_4:7395202-7395221 | None:intergenic | 55.0% | |
| GGTTCCATTGGGAATAGGCC+AGG | - | chr5_4:7395674-7395693 | None:intergenic | 55.0% | |
| GTGTAGCCTCCCTCTTGAAC+TGG | - | chr5_4:7395818-7395837 | None:intergenic | 55.0% | |
| ! | CCATAACAACCTAGCGGGTG+AGG | - | chr5_4:7395844-7395863 | None:intergenic | 55.0% |
| CCTCACCCGCTAGGTTGTTA+TGG | + | chr5_4:7395841-7395860 | Msa0834370:CDS | 55.0% | |
| TGTGCGTGGCCATGTTAGTG+CGG | - | chr5_4:7395898-7395917 | None:intergenic | 55.0% | |
| GCGGTCATTGCAGTTGCGCA+CGG | + | chr5_4:7394032-7394051 | Msa0834370:intron | 60.0% | |
| GGAATAGGCTAGGCCGAGCT+AGG | + | chr5_4:7395082-7395101 | Msa0834370:intron | 60.0% | |
| GAAGGCCTAAGCCTGGCCTA+CGG | + | chr5_4:7395141-7395160 | Msa0834370:intron | 60.0% | |
| TCTATGACAGGCCGTAGGCC+AGG | - | chr5_4:7395155-7395174 | None:intergenic | 60.0% | |
| ACAGGCTAGCATGCCGCATC+AGG | - | chr5_4:7395213-7395232 | None:intergenic | 60.0% | |
| ACGACAGGTCATGCCAGACC+AGG | - | chr5_4:7395622-7395641 | None:intergenic | 60.0% | |
| GGTCTGGCATGACCTGTCGT+AGG | + | chr5_4:7395622-7395641 | Msa0834370:intron | 60.0% | |
| GGCATGACCTGTCGTAGGCT+AGG | + | chr5_4:7395627-7395646 | Msa0834370:intron | 60.0% | |
| CCTACGACCTAGCCTACGAC+AGG | - | chr5_4:7395637-7395656 | None:intergenic | 60.0% | |
| CCTGTCGTAGGCTAGGTCGT+AGG | + | chr5_4:7395634-7395653 | Msa0834370:intron | 60.0% | |
| CCATTGGGAATAGGCCAGGC+CGG | - | chr5_4:7395670-7395689 | None:intergenic | 60.0% | |
| CCATGTTAGTGCGGCAAGGC+AGG | - | chr5_4:7395889-7395908 | None:intergenic | 60.0% | |
| CCTGCCTTGCCGCACTAACA+TGG | + | chr5_4:7395886-7395905 | Msa0834370:CDS | 60.0% | |
| GTGGCCATGTTAGTGCGGCA+AGG | - | chr5_4:7395893-7395912 | None:intergenic | 60.0% | |
| ACAGGCCGTAGGCCAGGCTT+AGG | - | chr5_4:7395149-7395168 | None:intergenic | 65.0% | |
| GCTAGGTCGTAGGCCCCTGT+AGG | + | chr5_4:7395644-7395663 | Msa0834370:intron | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | - | chr5_4:7395661-7395680 | None:intergenic | 65.0% | |
| AATAGGCCAGGCCGGCCTAC+AGG | - | chr5_4:7395662-7395681 | None:intergenic | 65.0% | |
| CCGGCCTGGCCTATTCCCAA+TGG | + | chr5_4:7395667-7395686 | Msa0834370:intron | 65.0% | |
| CTACACGAGCCTCACCCGCT+AGG | + | chr5_4:7395832-7395851 | Msa0834370:CDS | 65.0% | |
| GGGGGAGCCACTGCTCCCAT+GGG | - | chr5_4:7394350-7394369 | None:intergenic | 70.0% | |
| GGTCGTAGGCCCCTGTAGGC+CGG | + | chr5_4:7395648-7395667 | Msa0834370:intron | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | - | chr5_4:7395660-7395679 | None:intergenic | 70.0% | |
| GGGGGGAGCCACTGCTCCCA+TGG | - | chr5_4:7394351-7394370 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | + | chr5_4:7395653-7395672 | Msa0834370:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7392952 | 7395992 | 7392952 | ID=Msa0834370;Name=Msa0834370 |
| chr5_4 | mRNA | 7392952 | 7395992 | 7392952 | ID=Msa0834370-mRNA-1;Parent=Msa0834370;Name=Msa0834370-mRNA-1;_AED=0.63;_eAED=0.63;_QI=79|0.33|0.25|0.75|0.33|0.5|4|0|166 |
| chr5_4 | exon | 7392952 | 7393092 | 7392952 | ID=Msa0834370-mRNA-1:exon:3334;Parent=Msa0834370-mRNA-1 |
| chr5_4 | exon | 7393226 | 7393416 | 7393226 | ID=Msa0834370-mRNA-1:exon:3335;Parent=Msa0834370-mRNA-1 |
| chr5_4 | exon | 7394701 | 7394758 | 7394701 | ID=Msa0834370-mRNA-1:exon:3336;Parent=Msa0834370-mRNA-1 |
| chr5_4 | exon | 7395803 | 7395992 | 7395803 | ID=Msa0834370-mRNA-1:exon:3337;Parent=Msa0834370-mRNA-1 |
| chr5_4 | five_prime_UTR | 7392952 | 7393030 | 7392952 | ID=Msa0834370-mRNA-1:five_prime_utr;Parent=Msa0834370-mRNA-1 |
| chr5_4 | CDS | 7393031 | 7393092 | 7393031 | ID=Msa0834370-mRNA-1:cds;Parent=Msa0834370-mRNA-1 |
| chr5_4 | CDS | 7393226 | 7393416 | 7393226 | ID=Msa0834370-mRNA-1:cds;Parent=Msa0834370-mRNA-1 |
| chr5_4 | CDS | 7394701 | 7394758 | 7394701 | ID=Msa0834370-mRNA-1:cds;Parent=Msa0834370-mRNA-1 |
| chr5_4 | CDS | 7395803 | 7395992 | 7395803 | ID=Msa0834370-mRNA-1:cds;Parent=Msa0834370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
