AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0834390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0834390 MtrunA17_Chr5g0399881 95.385 130 6 0 1 130 1 130 1.30e-92 265
Msa0834390 MtrunA17_Chr5g0399861 94.615 130 7 0 1 130 1 130 2.26e-90 259
Msa0834390 MtrunA17_Chr5g0399851 74.312 109 20 3 29 130 6 113 8.88e-51 158
Msa0834390 MtrunA17_Chr2g0301131 41.606 137 40 4 25 130 99 226 3.51e-25 95.9
Msa0834390 MtrunA17_Chr4g0070271 37.302 126 50 5 5 130 73 169 6.94e-16 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0834390 AT1G74950.2 41.818 110 48 2 37 130 112 221 4.76e-19 79.7
Msa0834390 AT1G74950.1 41.818 110 48 2 37 130 112 221 7.24e-19 79.7
Msa0834390 AT1G19180.2 41.584 101 52 2 37 130 53 153 1.34e-17 75.1
Msa0834390 AT1G19180.1 41.584 101 52 2 37 130 119 219 4.82e-17 74.7
Msa0834390 AT1G19180.3 41.584 101 52 2 37 130 119 219 4.82e-17 74.7
Msa0834390 AT5G20900.1 33.333 129 64 4 24 130 28 156 1.28e-13 64.7

Find 59 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACAAGAGATTCCTATTT+TGG 0.046444 5_4:+7420328 Msa0834390:CDS
ATCCAAATTCCCTACCTTTA+AGG 0.138188 5_4:-7427245 None:intergenic
CGCCTTAAAGGTAGGGAATT+TGG 0.149830 5_4:+7427243 Msa0834390:three_prime_UTR
CCATCTATACCTGTTATTTA+TGG 0.164541 5_4:+7420727 Msa0834390:CDS
TGATGACTTTCTCGCCTTAA+AGG 0.196826 5_4:+7427231 Msa0834390:three_prime_UTR
GATAACCAATTTACTAAAAT+TGG 0.211487 5_4:-7427505 None:intergenic
ATTCATCAATTGGCTTATTA+AGG 0.212666 5_4:-7427665 None:intergenic
AGTAAGCATAGTTGTTATTA+TGG 0.237548 5_4:-7420660 None:intergenic
GGCTTCACTTCATCGGTTCT+TGG 0.300958 5_4:+7420874 Msa0834390:CDS
TCCGGCTCTGGCTCCACTTT+AGG 0.326138 5_4:-7427428 None:intergenic
CCAAAATAGGAATCTCTTGT+AGG 0.331403 5_4:-7420328 None:intergenic
GACAAACTTATCAGTCAATA+TGG 0.340189 5_4:-7427584 None:intergenic
CATGACATGGATTCATCAAT+TGG 0.376792 5_4:-7427675 None:intergenic
AAGGGAGGGAGTCCTAAAAT+TGG 0.393435 5_4:-7426962 None:intergenic
TACCTGGAGTTTCCCAAAAT+AGG 0.395618 5_4:-7420341 None:intergenic
GGAAGTTGTTGAAAATTCAT+AGG 0.405668 5_4:-7420296 None:intergenic
TAGGAAGATCTCAATTGTTA+AGG 0.410485 5_4:+7426749 Msa0834390:three_prime_UTR
GGAAAAGTCCATGATGTCTT+TGG 0.411671 5_4:-7420608 None:intergenic
TGAAGTACTAGTAATTCCTT+TGG 0.431697 5_4:-7420632 None:intergenic
TTGATTGAGAGAGATCTTGC+TGG 0.453320 5_4:-7420918 None:intergenic
TTCATCGGTTCTTGGAGAAA+AGG 0.463618 5_4:+7420882 Msa0834390:CDS
AAACATCATAATAATAGAAA+AGG 0.468148 5_4:-7427553 None:intergenic
CCATAAATAACAGGTATAGA+TGG 0.477854 5_4:-7420727 None:intergenic
GGCTTATTAAGGAATGCTGC+TGG 0.478463 5_4:-7427654 None:intergenic
AGTGAAGCCTTCCTAGTCAT+TGG 0.481423 5_4:-7420860 None:intergenic
ATTGTCATTTGTGCACATCT+AGG 0.485611 5_4:-7420535 None:intergenic
AGTACTAGTAATTCCTTTGG+TGG 0.499055 5_4:-7420629 None:intergenic
ATCCATGTCATGGCTATCCT+TGG 0.509457 5_4:+7427686 Msa0834390:three_prime_UTR
GCTGGATTATTTGTTTGATA+CGG 0.513885 5_4:-7427636 None:intergenic
TATTGAATAAACCTTAAAAG+TGG 0.513919 5_4:+7427145 Msa0834390:three_prime_UTR
GGATTGAGACACGGTGACTT+TGG 0.515188 5_4:+7426845 Msa0834390:three_prime_UTR
ACTCGGTGTATCTCCGGCTC+TGG 0.515272 5_4:-7427440 None:intergenic
TCCTAAAGTGGAGCCAGAGC+CGG 0.518790 5_4:+7427427 Msa0834390:three_prime_UTR
AGATTTACCAATGACTAGGA+AGG 0.530955 5_4:+7420853 Msa0834390:intron
CAGGTATAGATGGTACTTGA+GGG 0.533329 5_4:-7420717 None:intergenic
GACACGGTGACTTTGGTGAA+TGG 0.535401 5_4:+7426852 Msa0834390:three_prime_UTR
CTAGGAAGGCTTCACTTCAT+CGG 0.542236 5_4:+7420867 Msa0834390:CDS
ACTTTCTCGCCTTAAAGGTA+GGG 0.546268 5_4:+7427236 Msa0834390:three_prime_UTR
AATGAAGGCTAATATTAAGA+AGG 0.546955 5_4:+7420507 Msa0834390:CDS
GACTTTCTCGCCTTAAAGGT+AGG 0.554708 5_4:+7427235 Msa0834390:three_prime_UTR
ATCTCTTGTAGGAAGAGATG+AGG 0.564072 5_4:-7420317 None:intergenic
TCTTGGAGAAAAGGAAGGAT+AGG 0.567398 5_4:+7420891 Msa0834390:CDS
ACAGGTATAGATGGTACTTG+AGG 0.569787 5_4:-7420718 None:intergenic
ACTCGCACTCGGTGTATCTC+CGG 0.570860 5_4:-7427446 None:intergenic
TCGGTTCTTGGAGAAAAGGA+AGG 0.585705 5_4:+7420886 Msa0834390:CDS
GTTTCTGCAGAATTGCTGCA+AGG 0.606526 5_4:+7427610 Msa0834390:three_prime_UTR
ATTCAGATTTACCAATGACT+AGG 0.608086 5_4:+7420849 Msa0834390:intron
TTTCTGCAGAATTGCTGCAA+GGG 0.611240 5_4:+7427611 Msa0834390:three_prime_UTR
ATTGTTATAGAACATGTCCT+CGG 0.614294 5_4:+7427917 Msa0834390:three_prime_UTR
TGCCAAGGATAGCCATGACA+TGG 0.617530 5_4:-7427688 None:intergenic
GATACCATAAACAAAAGTGA+AGG 0.619955 5_4:+7427480 Msa0834390:three_prime_UTR
CAATTGATGAATCCATGTCA+TGG 0.620921 5_4:+7427676 Msa0834390:three_prime_UTR
GTACATATTAGTTAATGTTG+AGG 0.621240 5_4:+7427797 Msa0834390:three_prime_UTR
GATTTGTGTAGCGGTGATTG+TGG 0.622764 5_4:-7427711 None:intergenic
CTACATTCAGATTTGTGTAG+CGG 0.623570 5_4:-7427720 None:intergenic
AATTTGACATGACTCGCACT+CGG 0.638841 5_4:-7427457 None:intergenic
TAGCGGTGATTGTGGTGCCA+AGG 0.656575 5_4:-7427703 None:intergenic
GAAGTTCATGGATTGAGACA+CGG 0.662085 5_4:+7426836 Msa0834390:three_prime_UTR
TCGACATAAGAATGATACCG+AGG 0.723742 5_4:-7427934 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTAAATTTTT+AGG + chr5_4:7422561-7422580 Msa0834390:intron 0.0%
!! AAAAAAAAATAAAAAATAAA+AGG - chr5_4:7422669-7422688 None:intergenic 0.0%
!! TTATATTAATATATTATAAT+AGG - chr5_4:7423267-7423286 None:intergenic 0.0%
!!! ATTTATGGTAATTTTTTTTT+TGG + chr5_4:7420742-7420761 Msa0834390:intron 10.0%
!! AATAAAATTAAATGTAAGTT+TGG + chr5_4:7421007-7421026 Msa0834390:intron 10.0%
!! AAATTTATTATTTCATACAA+TGG - chr5_4:7422433-7422452 None:intergenic 10.0%
!! AAAAATGTTAAATATGATTA+TGG + chr5_4:7422625-7422644 Msa0834390:intron 10.0%
!!! TTATTTTTGTTTTGAAAAAA+GGG - chr5_4:7426983-7427002 None:intergenic 10.0%
!!! TTTATTTTTGTTTTGAAAAA+AGG - chr5_4:7426984-7427003 None:intergenic 10.0%
!! AAAAAATTACCATAAATAAC+AGG - chr5_4:7420739-7420758 None:intergenic 15.0%
!!! TATTATTCAATTCACTTTTA+CGG + chr5_4:7421157-7421176 Msa0834390:intron 15.0%
!! AAAAGGTTAAAATATTTGTA+GGG - chr5_4:7422652-7422671 None:intergenic 15.0%
!! TAAAAGGTTAAAATATTTGT+AGG - chr5_4:7422653-7422672 None:intergenic 15.0%
!!! ACCATACTAATATTTTATTA+GGG - chr5_4:7423529-7423548 None:intergenic 15.0%
!!! TTATCCATTATGAATATTTT+TGG - chr5_4:7424415-7424434 None:intergenic 15.0%
!! TTAAAACTCATAAATATACA+TGG + chr5_4:7424534-7424553 Msa0834390:intron 15.0%
!!! ATTTTAAATTCACAAATCAA+TGG + chr5_4:7424614-7424633 Msa0834390:intron 15.0%
!! CTAAACATTAAAAGAAAAAT+TGG + chr5_4:7425543-7425562 Msa0834390:intron 15.0%
!!! TCTTATTTATTCATCTTTAA+AGG - chr5_4:7425596-7425615 None:intergenic 15.0%
!! AGAAATTCAAAGTTATTATT+CGG + chr5_4:7425613-7425632 Msa0834390:intron 15.0%
!! ATTAAAAAAATTGATTGAAC+TGG + chr5_4:7426791-7426810 Msa0834390:three_prime_UTR 15.0%
!!! AAAAAATGTTTGAATGTTTT+TGG - chr5_4:7427344-7427363 None:intergenic 15.0%
!! AAACATCATAATAATAGAAA+AGG - chr5_4:7427556-7427575 None:intergenic 15.0%
!!! AAATGACAATCTTTTATGAT+GGG + chr5_4:7420548-7420567 Msa0834390:CDS 20.0%
!!! TGTTAATAAACTTCACTTTT+TGG + chr5_4:7420956-7420975 Msa0834390:intron 20.0%
!!! GTTAATAAACTTCACTTTTT+GGG + chr5_4:7420957-7420976 Msa0834390:intron 20.0%
!!! TTAATAAACTTCACTTTTTG+GGG + chr5_4:7420958-7420977 Msa0834390:intron 20.0%
!!! ATTATTCAATTCACTTTTAC+GGG + chr5_4:7421158-7421177 Msa0834390:intron 20.0%
!! ATTACTAATACTATGATGTT+TGG + chr5_4:7421277-7421296 Msa0834390:intron 20.0%
!! TTACTAATACTATGATGTTT+GGG + chr5_4:7421278-7421297 Msa0834390:intron 20.0%
!!! TTCATCAATTGGTTTATTAA+TGG - chr5_4:7421383-7421402 None:intergenic 20.0%
!!! ATACATATTTTTGTGAGTAT+AGG - chr5_4:7421567-7421586 None:intergenic 20.0%
!! TGGTTCAATTCAATAAAATA+AGG + chr5_4:7421820-7421839 Msa0834390:intron 20.0%
!! ATTGAATTGAACTAGTATAA+AGG + chr5_4:7421892-7421911 Msa0834390:intron 20.0%
!! TTCTCAAATTTGATTATCTT+CGG - chr5_4:7422101-7422120 None:intergenic 20.0%
!!! CTTTTGGTTAAATTTCATTT+TGG - chr5_4:7422162-7422181 None:intergenic 20.0%
!! AAAGGTTAAAATATTTGTAG+GGG - chr5_4:7422651-7422670 None:intergenic 20.0%
!!! TTGTTTACATTTTTAGACAT+GGG + chr5_4:7423292-7423311 Msa0834390:intron 20.0%
!! ACTTCAAATATTACTTTACA+TGG + chr5_4:7423324-7423343 Msa0834390:intron 20.0%
!! CTTCAAATATTACTTTACAT+GGG + chr5_4:7423325-7423344 Msa0834390:intron 20.0%
!! ATCCTAAAAAGAATGAAATT+GGG - chr5_4:7423491-7423510 None:intergenic 20.0%
!! AATCCTAAAAAGAATGAAAT+TGG - chr5_4:7423492-7423511 None:intergenic 20.0%
!!! GACCATACTAATATTTTATT+AGG - chr5_4:7423530-7423549 None:intergenic 20.0%
!! TGTATTATCAATGAAAGATT+AGG - chr5_4:7423841-7423860 None:intergenic 20.0%
!!! ATCTTTCATTGATAATACAA+AGG + chr5_4:7423842-7423861 Msa0834390:intron 20.0%
!!! TTCTTAGAATCTAAAACAAA+CGG - chr5_4:7423917-7423936 None:intergenic 20.0%
!!! TGTTTTAGATTCTAAGAAAA+TGG + chr5_4:7423919-7423938 Msa0834390:intron 20.0%
!!! AATCGCATATTTTTTCAAAA+TGG + chr5_4:7424092-7424111 Msa0834390:intron 20.0%
!!! TTTTAACAAAGAAATTTCCA+AGG - chr5_4:7424281-7424300 None:intergenic 20.0%
!! TTAAAACAAGCTATAACAAA+CGG + chr5_4:7424341-7424360 Msa0834390:intron 20.0%
!! GGTATATAGTATATATTTGT+TGG - chr5_4:7424481-7424500 None:intergenic 20.0%
!!! TTATGAGTTTTAAGATTCAA+TGG - chr5_4:7424527-7424546 None:intergenic 20.0%
!! ATAAAAAAGATTGAGACAAA+AGG + chr5_4:7424825-7424844 Msa0834390:intron 20.0%
!!! AATTTGCTCATTCTAAAAAT+TGG - chr5_4:7425170-7425189 None:intergenic 20.0%
!! TAATTGTCAAAGAAATTATC+TGG - chr5_4:7425371-7425390 None:intergenic 20.0%
!!! AATTGAATAATGACTTGTTT+TGG - chr5_4:7425792-7425811 None:intergenic 20.0%
!! AAATGACAATCATTTATGAT+GGG + chr5_4:7426327-7426346 Msa0834390:intron 20.0%
!!! TTATGGTAGGTAATTTTTTT+TGG + chr5_4:7426523-7426542 Msa0834390:intron 20.0%
!! GTAAATCTGAATACATAAAA+AGG - chr5_4:7420841-7420860 None:intergenic 20.0%
!!! TGATAGAGAAATCAATTTTA+AGG + chr5_4:7426937-7426956 Msa0834390:three_prime_UTR 20.0%
!! AAAAATTTACAACTCAAATC+TGG + chr5_4:7427001-7427020 Msa0834390:three_prime_UTR 20.0%
!! ATGTATGTAACTTATACTAT+AGG - chr5_4:7427051-7427070 None:intergenic 20.0%
!! TATTGAATAAACCTTAAAAG+TGG + chr5_4:7427075-7427094 Msa0834390:intron 20.0%
!! TATTGAATAAACCTTAAAAG+TGG + chr5_4:7427075-7427094 Msa0834390:intron 20.0%
!! GATAACCAATTTACTAAAAT+TGG - chr5_4:7427508-7427527 None:intergenic 20.0%
!!! GTTTTGTTTTGTGCTTTTTT+TGG - chr5_4:7420252-7420271 None:intergenic 25.0%
! CATACTAGTAGTATATAACA+TGG + chr5_4:7420439-7420458 Msa0834390:intron 25.0%
!!! GTTTTATTACAGTGTAATGA+AGG + chr5_4:7420492-7420511 Msa0834390:intron 25.0%
! AATGAAGGCTAATATTAAGA+AGG + chr5_4:7420507-7420526 Msa0834390:CDS 25.0%
!! CAAATGACAATCTTTTATGA+TGG + chr5_4:7420547-7420566 Msa0834390:CDS 25.0%
!! AGTAAGCATAGTTGTTATTA+TGG - chr5_4:7420663-7420682 None:intergenic 25.0%
!! TTGGATATTTTATGTTTGAG+AGG + chr5_4:7420761-7420780 Msa0834390:intron 25.0%
!! TGGATATTTTATGTTTGAGA+GGG + chr5_4:7420762-7420781 Msa0834390:intron 25.0%
! AAACATGTCAAAATCAATCT+TGG - chr5_4:7421050-7421069 None:intergenic 25.0%
! ATCCAAACATAAATCACTAA+AGG + chr5_4:7421186-7421205 Msa0834390:intron 25.0%
! TACCTTTAGTGATTTATGTT+TGG - chr5_4:7421191-7421210 None:intergenic 25.0%
! AACAAACATATCAGTCAATA+TGG - chr5_4:7421306-7421325 None:intergenic 25.0%
!! ATTGGTTTATTAATGGTTCT+TGG - chr5_4:7421376-7421395 None:intergenic 25.0%
! AAACAGTTAAAGTAACACAT+GGG - chr5_4:7421470-7421489 None:intergenic 25.0%
! AAAACAGTTAAAGTAACACA+TGG - chr5_4:7421471-7421490 None:intergenic 25.0%
! ATACATATTTGTGATTGTTG+TGG + chr5_4:7421585-7421604 Msa0834390:intron 25.0%
!!! ACAAGTAGTACACTTTTTTT+AGG - chr5_4:7421660-7421679 None:intergenic 25.0%
!! AATATAAAAGCTTTATGCTG+TGG - chr5_4:7421774-7421793 None:intergenic 25.0%
! ATAAGGAAAATCAAATCGAA+AGG + chr5_4:7421837-7421856 Msa0834390:intron 25.0%
!!! ATGTAAAAGTAGTTCTGATT+TGG - chr5_4:7421941-7421960 None:intergenic 25.0%
! TCTCAAATTTGATTATCTTC+GGG - chr5_4:7422100-7422119 None:intergenic 25.0%
! GAAGATAATCAAATTTGAGA+AGG + chr5_4:7422100-7422119 Msa0834390:intron 25.0%
! TAACCAAAAGAACTTAATTG+TGG + chr5_4:7422172-7422191 Msa0834390:intron 25.0%
!!! GTTGATGCATTTTAGTTTAA+TGG + chr5_4:7422252-7422271 Msa0834390:intron 25.0%
! GTTTACAAAATCCAAAAACT+AGG - chr5_4:7422278-7422297 None:intergenic 25.0%
! ATTGTATGAAATAATGCCAA+CGG + chr5_4:7422394-7422413 Msa0834390:intron 25.0%
!!! TAAATTTTTAGGAAAGCATG+AGG + chr5_4:7422572-7422591 Msa0834390:intron 25.0%
! ATATTGCATATTATATGCAG+GGG - chr5_4:7422893-7422912 None:intergenic 25.0%
! GATATTGCATATTATATGCA+GGG - chr5_4:7422894-7422913 None:intergenic 25.0%
! ATAAATTACTACCTCAAGTA+GGG - chr5_4:7423220-7423239 None:intergenic 25.0%
! AATAAATTACTACCTCAAGT+AGG - chr5_4:7423221-7423240 None:intergenic 25.0%
!!! GTTGTTTACATTTTTAGACA+TGG + chr5_4:7423291-7423310 Msa0834390:intron 25.0%
! TCCTAAAAAGAATGAAATTG+GGG - chr5_4:7423490-7423509 None:intergenic 25.0%
! GCCCTAATAAAATATTAGTA+TGG + chr5_4:7423525-7423544 Msa0834390:intron 25.0%
!! AGAATTTAGTGTTAACTTGA+CGG - chr5_4:7423647-7423666 None:intergenic 25.0%
!! TATTAAAGTGTCTATTGCTA+AGG + chr5_4:7423716-7423735 Msa0834390:intron 25.0%
! TATCAATGAAAGATTAGGTA+CGG - chr5_4:7423836-7423855 None:intergenic 25.0%
!!! TGCATAGTTTTATGAATCTA+AGG + chr5_4:7423889-7423908 Msa0834390:intron 25.0%
!!! GCATAGTTTTATGAATCTAA+GGG + chr5_4:7423890-7423909 Msa0834390:intron 25.0%
!! TCTTAGAATCTAAAACAAAC+GGG - chr5_4:7423916-7423935 None:intergenic 25.0%
!! TTTTCATTTGAAGATTTCCT+TGG + chr5_4:7424261-7424280 Msa0834390:intron 25.0%
! TAAAACAAGCTATAACAAAC+GGG + chr5_4:7424342-7424361 Msa0834390:intron 25.0%
!!! ATTTTTCTTGCTTTTCTCAT+AGG - chr5_4:7424386-7424405 None:intergenic 25.0%
! GCTACCAAAAATATTCATAA+TGG + chr5_4:7424408-7424427 Msa0834390:intron 25.0%
! AATCATAGTATTAAGGAGAA+AGG - chr5_4:7424699-7424718 None:intergenic 25.0%
! GAGTGATTAAACCTAAAATT+AGG + chr5_4:7424877-7424896 Msa0834390:intron 25.0%
! GATTATGTTAAAAATAGGCT+TGG - chr5_4:7424907-7424926 None:intergenic 25.0%
! GGAGTGATTATGTTAAAAAT+AGG - chr5_4:7424912-7424931 None:intergenic 25.0%
! TGCTAATATAGGTTTATCTT+TGG - chr5_4:7424974-7424993 None:intergenic 25.0%
! TCTTGCTTCTCATATTTATA+GGG - chr5_4:7425022-7425041 None:intergenic 25.0%
! TTCTTGCTTCTCATATTTAT+AGG - chr5_4:7425023-7425042 None:intergenic 25.0%
! CTAAAAATTGGAACAATTTC+TGG - chr5_4:7425158-7425177 None:intergenic 25.0%
! AACAATCAAGGTCTATTTAT+GGG - chr5_4:7425264-7425283 None:intergenic 25.0%
! AAATTGAAGAACTAGATTGA+GGG + chr5_4:7425445-7425464 Msa0834390:intron 25.0%
!! TTTCTTTTAATGTTTAGTCG+AGG - chr5_4:7425540-7425559 None:intergenic 25.0%
! TTCATCTCAAAATATCTCTT+GGG - chr5_4:7425682-7425701 None:intergenic 25.0%
! TTTCATCTCAAAATATCTCT+TGG - chr5_4:7425683-7425702 None:intergenic 25.0%
!!! AGAGATATTTTGAGATGAAA+AGG + chr5_4:7425683-7425702 Msa0834390:intron 25.0%
!! ATAAATAAAACGTGCTGATA+TGG + chr5_4:7425754-7425773 Msa0834390:intron 25.0%
!!! TAATGACTTGTTTTGGTTTT+TGG - chr5_4:7425785-7425804 None:intergenic 25.0%
! ATGGAATAAATAGTTGAAGA+AGG - chr5_4:7426020-7426039 None:intergenic 25.0%
!!! ATTCATGCTTTTTTTTGGTA+TGG - chr5_4:7426039-7426058 None:intergenic 25.0%
!!! TGATGATTCATGCTTTTTTT+TGG - chr5_4:7426044-7426063 None:intergenic 25.0%
! GGAAATTGTTGAAAATTCAT+AGG - chr5_4:7426077-7426096 None:intergenic 25.0%
! CAAATGACAATCATTTATGA+TGG + chr5_4:7426326-7426345 Msa0834390:intron 25.0%
! AATTACCTACCATAAATAAC+AGG - chr5_4:7426518-7426537 None:intergenic 25.0%
! TTGGATATATTATGTTTGAG+AGG + chr5_4:7426542-7426561 Msa0834390:intron 25.0%
! TGGATATATTATGTTTGAGA+GGG + chr5_4:7426543-7426562 Msa0834390:intron 25.0%
!! TGTGTATTTTATGATAGAGA+AGG + chr5_4:7426902-7426921 Msa0834390:three_prime_UTR 25.0%
!! GTGTATTTTATGATAGAGAA+GGG + chr5_4:7426903-7426922 Msa0834390:three_prime_UTR 25.0%
!!! AATTTTAAGGAGCCAATTTT+AGG + chr5_4:7426950-7426969 Msa0834390:three_prime_UTR 25.0%
!!! TTTTGTTTTGAAAAAAGGGA+GGG - chr5_4:7426979-7426998 None:intergenic 25.0%
!!! TTTTTGTTTTGAAAAAAGGG+AGG - chr5_4:7426980-7426999 None:intergenic 25.0%
!!! AAGCAAAAAAACCACTTTTA+AGG - chr5_4:7427089-7427108 None:intergenic 25.0%
!!! AAGCAAAAAAACCACTTTTA+AGG - chr5_4:7427089-7427108 None:intergenic 25.0%
!! CTACCAAAAAGAATCAATTT+TGG + chr5_4:7427400-7427419 Msa0834390:three_prime_UTR 25.0%
!!! AGTCTATATATAGTTTTGAG+AGG - chr5_4:7427530-7427549 None:intergenic 25.0%
!! ATTCATCAATTGGCTTATTA+AGG - chr5_4:7427668-7427687 None:intergenic 25.0%
!!! ACACATATTTTTGTGAGTAT+AGG - chr5_4:7427779-7427798 None:intergenic 25.0%
! GTACATATTAGTTAATGTTG+AGG + chr5_4:7427797-7427816 Msa0834390:three_prime_UTR 25.0%
!!! GTTTTGTGCTTTTTTTGGTA+TGG - chr5_4:7420247-7420266 None:intergenic 30.0%
GGAAGTTGTTGAAAATTCAT+AGG - chr5_4:7420299-7420318 None:intergenic 30.0%
! CTACAAGAGATTCCTATTTT+GGG + chr5_4:7420329-7420348 Msa0834390:CDS 30.0%
AAAAAGAACATGTATGTACC+TGG - chr5_4:7420360-7420379 None:intergenic 30.0%
! TGAAGTACTAGTAATTCCTT+TGG - chr5_4:7420635-7420654 None:intergenic 30.0%
CCATAAATAACAGGTATAGA+TGG - chr5_4:7420730-7420749 None:intergenic 30.0%
! CCATCTATACCTGTTATTTA+TGG + chr5_4:7420727-7420746 Msa0834390:CDS 30.0%
ATTCAGATTTACCAATGACT+AGG + chr5_4:7420849-7420868 Msa0834390:intron 30.0%
AATCTTGGATTATCCAAAAG+TGG - chr5_4:7421035-7421054 None:intergenic 30.0%
CAAAATCAATTCAACTGATG+CGG - chr5_4:7421077-7421096 None:intergenic 30.0%
!! AATTGATTTTGCCTACAGAA+TGG + chr5_4:7421086-7421105 Msa0834390:intron 30.0%
CAGAACTACACTCTTAATAA+TGG - chr5_4:7421631-7421650 None:intergenic 30.0%
GAAAAAAGAATGACATCATG+AGG - chr5_4:7421738-7421757 None:intergenic 30.0%
ATATTTCCACTCTCATAACA+AGG + chr5_4:7421789-7421808 Msa0834390:intron 30.0%
CTCAAATTTGATTATCTTCG+GGG - chr5_4:7422099-7422118 None:intergenic 30.0%
! ATGCCACAATTAAGTTCTTT+TGG - chr5_4:7422178-7422197 None:intergenic 30.0%
GCATCAACAAAAATTGTGAT+AGG - chr5_4:7422240-7422259 None:intergenic 30.0%
!! TAGTTTAATGGCCTAGTTTT+TGG + chr5_4:7422264-7422283 Msa0834390:intron 30.0%
ATGGAAAAAAAAACTTCCGT+TGG - chr5_4:7422376-7422395 None:intergenic 30.0%
GTTGGCATTATTTCATACAA+TGG - chr5_4:7422395-7422414 None:intergenic 30.0%
TGGAAAAAAAAAACTTCCGT+TGG - chr5_4:7422413-7422432 None:intergenic 30.0%
!! ATTGTTTTGTTGAACTGTGA+AGG + chr5_4:7422457-7422476 Msa0834390:intron 30.0%
!!! TTTTTTGTCAAGTAGTCTAG+TGG + chr5_4:7422818-7422837 Msa0834390:intron 30.0%
! CAATTTAATTGTGGAGTGTT+CGG + chr5_4:7422853-7422872 Msa0834390:intron 30.0%
! AATTTAATTGTGGAGTGTTC+GGG + chr5_4:7422854-7422873 Msa0834390:intron 30.0%
GGATATTGCATATTATATGC+AGG - chr5_4:7422895-7422914 None:intergenic 30.0%
CCTAAAAAGAATGAAATTGG+GGG - chr5_4:7423489-7423508 None:intergenic 30.0%
! ATTTTATTAGGGCTGATCAT+CGG - chr5_4:7423518-7423537 None:intergenic 30.0%
! ATAATACAGAGTATCACTGT+TGG - chr5_4:7423554-7423573 None:intergenic 30.0%
TAGTGTTAAGTCATAAACTC+GGG - chr5_4:7423682-7423701 None:intergenic 30.0%
CTAGTGTTAAGTCATAAACT+CGG - chr5_4:7423683-7423702 None:intergenic 30.0%
AAAATCCAGAGACTTTGATT+TGG + chr5_4:7423793-7423812 Msa0834390:intron 30.0%
! TCAATGGATATGATTTTGCA+AGG - chr5_4:7424511-7424530 None:intergenic 30.0%
ACAAATCAATGGTTGCAAAT+GGG + chr5_4:7424625-7424644 Msa0834390:intron 30.0%
! TTTTAAACTAGAAGAGAAGC+AGG + chr5_4:7424776-7424795 Msa0834390:intron 30.0%
! ATGTTAAAAATAGGCTTGGT+TGG - chr5_4:7424903-7424922 None:intergenic 30.0%
TAATCACTCCTTACTTGTAA+AGG + chr5_4:7424922-7424941 Msa0834390:intron 30.0%
ACTCTTTACCTTTACAAGTA+AGG - chr5_4:7424933-7424952 None:intergenic 30.0%
CTTCTCATATTTATAGGGAA+GGG - chr5_4:7425017-7425036 None:intergenic 30.0%
AGAAGCAAGAAAATTCATGT+TGG + chr5_4:7425032-7425051 Msa0834390:intron 30.0%
AGCAAATTCAATTGTTCTCA+TGG + chr5_4:7425182-7425201 Msa0834390:intron 30.0%
GAACAATCAAGGTCTATTTA+TGG - chr5_4:7425265-7425284 None:intergenic 30.0%
TCTTTGACAATTAAACTCCT+AGG + chr5_4:7425378-7425397 Msa0834390:intron 30.0%
CTTTGACAATTAAACTCCTA+GGG + chr5_4:7425379-7425398 Msa0834390:intron 30.0%
TTTGACAATTAAACTCCTAG+GGG + chr5_4:7425380-7425399 Msa0834390:intron 30.0%
TTGAAACATTGAAAGCTTTG+AGG + chr5_4:7425409-7425428 Msa0834390:intron 30.0%
GAAATTGAAGAACTAGATTG+AGG + chr5_4:7425444-7425463 Msa0834390:intron 30.0%
AATTGAAGAACTAGATTGAG+GGG + chr5_4:7425446-7425465 Msa0834390:intron 30.0%
TCATCTCAAAATATCTCTTG+GGG - chr5_4:7425681-7425700 None:intergenic 30.0%
! TTTGAGATGAAAAGGAAAGA+AGG + chr5_4:7425691-7425710 Msa0834390:intron 30.0%
TTGAGATGAAAAGGAAAGAA+GGG + chr5_4:7425692-7425711 Msa0834390:intron 30.0%
TTTATTTGCTTAGACCACTT+GGG - chr5_4:7425734-7425753 None:intergenic 30.0%
!! TTTTATTTGCTTAGACCACT+TGG - chr5_4:7425735-7425754 None:intergenic 30.0%
! CTACAAGAGATTCCTATTTT+GGG + chr5_4:7420329-7420348 Msa0834390:CDS 30.0%
AAAAAGAACATGTATGTACC+TGG - chr5_4:7420360-7420379 None:intergenic 30.0%
TATTACGTACAGTGTAATGA+AGG + chr5_4:7426265-7426284 Msa0834390:intron 30.0%
!! TAATAGGAGTATTAAGAAGG+AGG + chr5_4:7426289-7426308 Msa0834390:intron 30.0%
! ATTGTCATTTGTGCACATTT+AGG - chr5_4:7426317-7426336 None:intergenic 30.0%
TGAAAAAGTCAAAGACATCA+TGG + chr5_4:7426379-7426398 Msa0834390:intron 30.0%
! TGAAGTACTAGTAATTCCTT+TGG - chr5_4:7420635-7420654 None:intergenic 30.0%
CCATAAATAACAGGTATAGA+TGG - chr5_4:7420730-7420749 None:intergenic 30.0%
! CCATCTATACCTGTTATTTA+TGG + chr5_4:7420727-7420746 Msa0834390:CDS 30.0%
! CTATACCTGTTATTTATGGT+AGG + chr5_4:7420731-7420750 Msa0834390:intron 30.0%
TTCATCAGTTCTTGGAAAAA+AGG + chr5_4:7426663-7426682 Msa0834390:intron 30.0%
!!! GTCAATAGACTTCACTTTTT+AGG + chr5_4:7426730-7426749 Msa0834390:three_prime_UTR 30.0%
TAGGAAGATCTCAATTGTTA+AGG + chr5_4:7426749-7426768 Msa0834390:three_prime_UTR 30.0%
! TTGATTTTGCTTGAAGTTCA+TGG + chr5_4:7426824-7426843 Msa0834390:three_prime_UTR 30.0%
! TTGTCTCAACATTGGATTTT+TGG - chr5_4:7427271-7427290 None:intergenic 30.0%
!! GAGCCAAAATTGATTCTTTT+TGG - chr5_4:7427406-7427425 None:intergenic 30.0%
GATACCATAAACAAAAGTGA+AGG + chr5_4:7427480-7427499 Msa0834390:three_prime_UTR 30.0%
!! AGGAGCCAATTTTAGTAAAT+TGG + chr5_4:7427500-7427519 Msa0834390:three_prime_UTR 30.0%
GACAAACTTATCAGTCAATA+TGG - chr5_4:7427587-7427606 None:intergenic 30.0%
GCTGGATTATTTGTTTGATA+CGG - chr5_4:7427639-7427658 None:intergenic 30.0%
CTACAAAAATAACATAGAGG+TGG - chr5_4:7427748-7427767 None:intergenic 30.0%
!!! CACCTCTATGTTATTTTTGT+AGG + chr5_4:7427746-7427765 Msa0834390:three_prime_UTR 30.0%
GTCCTACAAAAATAACATAG+AGG - chr5_4:7427751-7427770 None:intergenic 30.0%
ATTGTTATAGAACATGTCCT+CGG + chr5_4:7427917-7427936 Msa0834390:three_prime_UTR 30.0%
CCAAAATAGGAATCTCTTGT+AGG - chr5_4:7420331-7420350 None:intergenic 35.0%
! CCTACAAGAGATTCCTATTT+TGG + chr5_4:7420328-7420347 Msa0834390:CDS 35.0%
! ATTGTCATTTGTGCACATCT+AGG - chr5_4:7420538-7420557 None:intergenic 35.0%
TGAAAAAGCCAAAGACATCA+TGG + chr5_4:7420600-7420619 Msa0834390:CDS 35.0%
AGTACTAGTAATTCCTTTGG+TGG - chr5_4:7420632-7420651 None:intergenic 35.0%
AGATTTACCAATGACTAGGA+AGG + chr5_4:7420853-7420872 Msa0834390:intron 35.0%
!! TGTAAGTTTGGTTCCACTTT+TGG + chr5_4:7421019-7421038 Msa0834390:intron 35.0%
TCAAGTAGAATCCATTCTGT+AGG - chr5_4:7421100-7421119 None:intergenic 35.0%
CTTGGATTGCTTGTTTGATA+TGG - chr5_4:7421358-7421377 None:intergenic 35.0%
!! CATGTCATCGATTCATCAAT+TGG - chr5_4:7421394-7421413 None:intergenic 35.0%
CAATTGATGAATCGATGACA+TGG + chr5_4:7421392-7421411 Msa0834390:intron 35.0%
!! GTTGTTGTTTCTGTATGAAC+TGG + chr5_4:7421500-7421519 Msa0834390:intron 35.0%
! CGAACTGTTTCAATTTGCTT+GGG - chr5_4:7421867-7421886 None:intergenic 35.0%
CCAAGCAAATTGAAACAGTT+CGG + chr5_4:7421865-7421884 Msa0834390:intron 35.0%
!! ATTATCTTCGGGGTTAGTTT+AGG - chr5_4:7422089-7422108 None:intergenic 35.0%
!! TAACGGATTTGTTGAAGCAT+AGG - chr5_4:7422302-7422321 None:intergenic 35.0%
CAACAAATCCGTTATCTAGT+TGG + chr5_4:7422308-7422327 Msa0834390:intron 35.0%
TATCCTGACCAACTAGATAA+CGG - chr5_4:7422319-7422338 None:intergenic 35.0%
ATCTAGTTGGTCAGGATATT+CGG + chr5_4:7422321-7422340 Msa0834390:intron 35.0%
! TTTTGTTGAACTGTGAAGGT+GGG + chr5_4:7422461-7422480 Msa0834390:intron 35.0%
AAAACCTCAAGCATCTTTGT+GGG - chr5_4:7422543-7422562 None:intergenic 35.0%
AAAAACCTCAAGCATCTTTG+TGG - chr5_4:7422544-7422563 None:intergenic 35.0%
GAGCTCACACAATTTAATTG+TGG + chr5_4:7422844-7422863 Msa0834390:intron 35.0%
! ATTTAATTGTGGAGTGTTCG+GGG + chr5_4:7422855-7422874 Msa0834390:intron 35.0%
!! ATTTTTAGACATGGGCTCTA+GGG + chr5_4:7423300-7423319 Msa0834390:intron 35.0%
ATGAAATTGGGGGTAACTTA+AGG - chr5_4:7423479-7423498 None:intergenic 35.0%
! CCCCCAATTTCATTCTTTTT+AGG + chr5_4:7423486-7423505 Msa0834390:intron 35.0%
! TCATAAACTCGGGAGTTTTT+AGG - chr5_4:7423672-7423691 None:intergenic 35.0%
! ATGATTTTGCAAGGACAACA+TGG - chr5_4:7424502-7424521 None:intergenic 35.0%
CACAAATCAATGGTTGCAAA+TGG + chr5_4:7424624-7424643 Msa0834390:intron 35.0%
! AAGGAGAAAGGTAGCTTTTA+AGG - chr5_4:7424687-7424706 None:intergenic 35.0%
CGAGGTCAATCATAGTATTA+AGG - chr5_4:7424706-7424725 None:intergenic 35.0%
GACTATCTGCACTGTAAAAT+TGG + chr5_4:7424725-7424744 Msa0834390:intron 35.0%
AAAGATTGAGACAAAAGGAG+AGG + chr5_4:7424830-7424849 Msa0834390:intron 35.0%
AAGATTGAGACAAAAGGAGA+GGG + chr5_4:7424831-7424850 Msa0834390:intron 35.0%
AGGTTTAATCACTCTTGAGA+GGG - chr5_4:7424871-7424890 None:intergenic 35.0%
TAGGTTTAATCACTCTTGAG+AGG - chr5_4:7424872-7424891 None:intergenic 35.0%
GCTTCTCATATTTATAGGGA+AGG - chr5_4:7425018-7425037 None:intergenic 35.0%
ATATTGTTCCTTGGCAACTA+AGG - chr5_4:7425089-7425108 None:intergenic 35.0%
AGAACTCTGATATTGTTCCT+TGG - chr5_4:7425098-7425117 None:intergenic 35.0%
!! TTTATGGGTTGTTTTGCTGA+AGG - chr5_4:7425249-7425268 None:intergenic 35.0%
TTGACAATTAAACTCCTAGG+GGG + chr5_4:7425381-7425400 Msa0834390:intron 35.0%
!! AACATTGAAAGCTTTGAGGA+TGG + chr5_4:7425413-7425432 Msa0834390:intron 35.0%
! TATCTGGAGTCTTTGTGATA+GGG - chr5_4:7425478-7425497 None:intergenic 35.0%
! ATATCTGGAGTCTTTGTGAT+AGG - chr5_4:7425479-7425498 None:intergenic 35.0%
TATCACAAAGACTCCAGATA+TGG + chr5_4:7425478-7425497 Msa0834390:intron 35.0%
ATCACAAAGACTCCAGATAT+GGG + chr5_4:7425479-7425498 Msa0834390:intron 35.0%
!! TTGTTTGAGACAGAAGTGTT+GGG - chr5_4:7425864-7425883 None:intergenic 35.0%
! TTTGTTTGAGACAGAAGTGT+TGG - chr5_4:7425865-7425884 None:intergenic 35.0%
TTGTACTACTTAAGAACGTG+TGG - chr5_4:7425950-7425969 None:intergenic 35.0%
CCAAAATAGGAATCTCTTGT+AGG - chr5_4:7420331-7420350 None:intergenic 35.0%
! CCTACAAGAGATTCCTATTT+TGG + chr5_4:7420328-7420347 Msa0834390:CDS 35.0%
CATGCTAGTAGTATATAGCA+TGG + chr5_4:7426208-7426227 Msa0834390:intron 35.0%
ACAGTGTAATGAAGGCTAAT+AGG + chr5_4:7420500-7420519 Msa0834390:intron 35.0%
!! GGCTAATAGGAGTATTAAGA+AGG + chr5_4:7426286-7426305 Msa0834390:intron 35.0%
!!! ATGTCTTTGACTTTTTCAGC+TGG - chr5_4:7426377-7426396 None:intergenic 35.0%
AGTACTAGTAATTCCTTTGG+TGG - chr5_4:7420632-7420651 None:intergenic 35.0%
! AGTAAGCATAGTTGTTGTTG+TGG - chr5_4:7426442-7426461 None:intergenic 35.0%
! AGTGAAGCTTTTCTTGTCAT+TGG - chr5_4:7426644-7426663 None:intergenic 35.0%
TCAGTTCTTGGAAAAAAGGA+AGG + chr5_4:7426667-7426686 Msa0834390:intron 35.0%
TCTTGGAAAAAAGGAAGGAT+AGG + chr5_4:7426672-7426691 Msa0834390:intron 35.0%
ATCCAAATTCCCTACCTTTA+AGG - chr5_4:7427248-7427267 None:intergenic 35.0%
! TCGAGTTTTTGTCTCAACAT+TGG - chr5_4:7427279-7427298 None:intergenic 35.0%
!!! AATTTTGGCTCATCCTAAAG+TGG + chr5_4:7427415-7427434 Msa0834390:three_prime_UTR 35.0%
CATGACATGGATTCATCAAT+TGG - chr5_4:7427678-7427697 None:intergenic 35.0%
CAATTGATGAATCCATGTCA+TGG + chr5_4:7427676-7427695 Msa0834390:three_prime_UTR 35.0%
CTACATTCAGATTTGTGTAG+CGG - chr5_4:7427723-7427742 None:intergenic 35.0%
ATCTCTTGTAGGAAGAGATG+AGG - chr5_4:7420320-7420339 None:intergenic 40.0%
!! TTCCTATTTTGGGAAACTCC+AGG + chr5_4:7420339-7420358 Msa0834390:CDS 40.0%
TACCTGGAGTTTCCCAAAAT+AGG - chr5_4:7420344-7420363 None:intergenic 40.0%
!!! ATGTCTTTGGCTTTTTCAGC+TGG - chr5_4:7420598-7420617 None:intergenic 40.0%
GGAAAAGTCCATGATGTCTT+TGG - chr5_4:7420611-7420630 None:intergenic 40.0%
! ATCATGGACTTTTCCACCAA+AGG + chr5_4:7420616-7420635 Msa0834390:CDS 40.0%
CAGGTATAGATGGTACTTGA+GGG - chr5_4:7420720-7420739 None:intergenic 40.0%
ACAGGTATAGATGGTACTTG+AGG - chr5_4:7420721-7420740 None:intergenic 40.0%
!! TTCATCGGTTCTTGGAGAAA+AGG + chr5_4:7420882-7420901 Msa0834390:CDS 40.0%
TCTTGGAGAAAAGGAAGGAT+AGG + chr5_4:7420891-7420910 Msa0834390:CDS 40.0%
TTGATTGAGAGAGATCTTGC+TGG - chr5_4:7420921-7420940 None:intergenic 40.0%
GATTTGTGTTGTGGTGATTG+TGG - chr5_4:7421430-7421449 None:intergenic 40.0%
CTACACTCAGATTTGTGTTG+TGG - chr5_4:7421439-7421458 None:intergenic 40.0%
TTAAAGTAACACATGGGTGG+AGG - chr5_4:7421464-7421483 None:intergenic 40.0%
CAGTTAAAGTAACACATGGG+TGG - chr5_4:7421467-7421486 None:intergenic 40.0%
AACTGGATCAATCAGCTGTA+TGG + chr5_4:7421517-7421536 Msa0834390:intron 40.0%
CTCAGTCCTACACAAATAGA+GGG - chr5_4:7421543-7421562 None:intergenic 40.0%
ACTCAGTCCTACACAAATAG+AGG - chr5_4:7421544-7421563 None:intergenic 40.0%
TTCCACTCTCATAACAAGGA+TGG + chr5_4:7421793-7421812 Msa0834390:intron 40.0%
! AACCATCCTTGTTATGAGAG+TGG - chr5_4:7421798-7421817 None:intergenic 40.0%
CTCATAACAAGGATGGTTCA+TGG + chr5_4:7421800-7421819 Msa0834390:intron 40.0%
! CCGAACTGTTTCAATTTGCT+TGG - chr5_4:7421868-7421887 None:intergenic 40.0%
AATCCGTTATCTAGTTGGTC+AGG + chr5_4:7422313-7422332 Msa0834390:intron 40.0%
!! GTTTTGTTGAACTGTGAAGG+TGG + chr5_4:7422460-7422479 Msa0834390:intron 40.0%
AAGGTGGGAGGAAAGAAATT+TGG + chr5_4:7422476-7422495 Msa0834390:intron 40.0%
!! TTGGAGAAGAGAGTGTTGTT+TGG + chr5_4:7422495-7422514 Msa0834390:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG - chr5_4:7422916-7422935 None:intergenic 40.0%
TACCAACTGAGTTAAGCTCA+CGG + chr5_4:7422916-7422935 Msa0834390:intron 40.0%
CAAAGTCCATTATCTGTCAG+AGG + chr5_4:7423123-7423142 Msa0834390:intron 40.0%
!! GATTAGCCTCTGACAGATAA+TGG - chr5_4:7423132-7423151 None:intergenic 40.0%
CGGTAGTCTCAGATAGATAA+TGG - chr5_4:7423164-7423183 None:intergenic 40.0%
TAGGGTCAAGTATCTATCGA+AGG - chr5_4:7423202-7423221 None:intergenic 40.0%
TAGATACTTGACCCTACTTG+AGG + chr5_4:7423206-7423225 Msa0834390:intron 40.0%
!! CATTTTTAGACATGGGCTCT+AGG + chr5_4:7423299-7423318 Msa0834390:intron 40.0%
GCAAACCAAATCAAAGTCTC+TGG - chr5_4:7423801-7423820 None:intergenic 40.0%
ATAACAAACGGGCCCTAAAA+CGG + chr5_4:7424353-7424372 Msa0834390:intron 40.0%
! TTTTACAGTGCAGATAGTCG+AGG - chr5_4:7424724-7424743 None:intergenic 40.0%
AGATTGAGACAAAAGGAGAG+GGG + chr5_4:7424832-7424851 Msa0834390:intron 40.0%
TAATCACTCTTGAGAGGGTT+TGG - chr5_4:7424866-7424885 None:intergenic 40.0%
GCTGATGCTCTTGCTAATAT+AGG - chr5_4:7424985-7425004 None:intergenic 40.0%
CTTGGCAACTAAGGAATAGA+TGG - chr5_4:7425080-7425099 None:intergenic 40.0%
CATCTATTCCTTAGTTGCCA+AGG + chr5_4:7425078-7425097 Msa0834390:intron 40.0%
! AGAGACTGACTCTATGTTAG+TGG - chr5_4:7425133-7425152 None:intergenic 40.0%
! GGCATCTTTAGGAACAATCA+AGG - chr5_4:7425276-7425295 None:intergenic 40.0%
TGGATCAAAGGAAACTGTGA+TGG - chr5_4:7425330-7425349 None:intergenic 40.0%
ACAGTTTCCTTTGATCCAAG+AGG + chr5_4:7425332-7425351 Msa0834390:intron 40.0%
ATGTTTCAATTCATCCCCCT+AGG - chr5_4:7425398-7425417 None:intergenic 40.0%
! ATCTGGAGTCTTTGTGATAG+GGG - chr5_4:7425477-7425496 None:intergenic 40.0%
TTATGGGCAACCGAGTTATT+AGG + chr5_4:7425510-7425529 Msa0834390:intron 40.0%
TCGAGGTACACCTAATAACT+CGG - chr5_4:7425523-7425542 None:intergenic 40.0%
TGCAACCACCAAAATGGATA+TGG + chr5_4:7425828-7425847 Msa0834390:intron 40.0%
GCAACCACCAAAATGGATAT+GGG + chr5_4:7425829-7425848 Msa0834390:intron 40.0%
ATCTCTTGTAGGAAGAGATG+AGG - chr5_4:7420320-7420339 None:intergenic 40.0%
!! TTCCTATTTTGGGAAACTCC+AGG + chr5_4:7420339-7420358 Msa0834390:CDS 40.0%
TACCTGGAGTTTCCCAAAAT+AGG - chr5_4:7420344-7420363 None:intergenic 40.0%
! ATCATGGACTTTTCCACCAA+AGG + chr5_4:7420616-7420635 Msa0834390:CDS 40.0%
CAGGTATAGATGGTACTTGA+GGG - chr5_4:7420720-7420739 None:intergenic 40.0%
ACAGGTATAGATGGTACTTG+AGG - chr5_4:7420721-7420740 None:intergenic 40.0%
!! AGGGTGTTTGATTTGTGTCA+TGG + chr5_4:7426562-7426581 Msa0834390:intron 40.0%
AGCTTCACTTCATCAGTTCT+TGG + chr5_4:7426655-7426674 Msa0834390:intron 40.0%
! GAAGTTCATGGATTGAGACA+CGG + chr5_4:7426836-7426855 Msa0834390:three_prime_UTR 40.0%
TGATGACTTTCTCGCCTTAA+AGG + chr5_4:7427231-7427250 Msa0834390:three_prime_UTR 40.0%
ACTTTCTCGCCTTAAAGGTA+GGG + chr5_4:7427236-7427255 Msa0834390:three_prime_UTR 40.0%
AATTTGACATGACTCGCACT+CGG - chr5_4:7427460-7427479 None:intergenic 40.0%
!! GGCTCCTTCACTTTTGTTTA+TGG - chr5_4:7427487-7427506 None:intergenic 40.0%
TTTCTGCAGAATTGCTGCAA+GGG + chr5_4:7427611-7427630 Msa0834390:three_prime_UTR 40.0%
TCGACATAAGAATGATACCG+AGG - chr5_4:7427937-7427956 None:intergenic 40.0%
AGTGAAGCCTTCCTAGTCAT+TGG - chr5_4:7420863-7420882 None:intergenic 45.0%
CTAGGAAGGCTTCACTTCAT+CGG + chr5_4:7420867-7420886 Msa0834390:CDS 45.0%
TCGGTTCTTGGAGAAAAGGA+AGG + chr5_4:7420886-7420905 Msa0834390:CDS 45.0%
GCTTGTTTGATATGGTGCCT+TGG - chr5_4:7421350-7421369 None:intergenic 45.0%
ATCGATGACATGGCTCTCTT+TGG + chr5_4:7421402-7421421 Msa0834390:intron 45.0%
GTATGGCCCTCTATTTGTGT+AGG + chr5_4:7421534-7421553 Msa0834390:intron 45.0%
TATTTGAACCCGGGTCTTTC+GGG - chr5_4:7422353-7422372 None:intergenic 45.0%
GTATTTGAACCCGGGTCTTT+CGG - chr5_4:7422354-7422373 None:intergenic 45.0%
TTCCGTTGGTATTTGAACCC+GGG - chr5_4:7422362-7422381 None:intergenic 45.0%
CTTCCGTTGGTATTTGAACC+CGG - chr5_4:7422363-7422382 None:intergenic 45.0%
AAGACCCACAAAGATGCTTG+AGG + chr5_4:7422536-7422555 Msa0834390:intron 45.0%
CACACATAAGTCGACTGACA+AGG - chr5_4:7422743-7422762 None:intergenic 45.0%
GTGAGCTTAACTCAGTTGGT+AGG - chr5_4:7422917-7422936 None:intergenic 45.0%
ACCAACTGAGTTAAGCTCAC+GGG + chr5_4:7422917-7422936 Msa0834390:intron 45.0%
TGAGACTACCGACACATCAT+CGG + chr5_4:7423173-7423192 Msa0834390:intron 45.0%
TGCAACATGTGGCAAGTTTG+CGG - chr5_4:7423369-7423388 None:intergenic 45.0%
GGAAGAAAACGTGCAACATG+TGG - chr5_4:7423380-7423399 None:intergenic 45.0%
GGTGAAATGTGGCTCTTCTT+AGG - chr5_4:7423401-7423420 None:intergenic 45.0%
ACGATCAAGGATACCTCAGT+GGG - chr5_4:7423429-7423448 None:intergenic 45.0%
! CTAAGGCATCAACTCTTCCT+GGG + chr5_4:7423733-7423752 Msa0834390:intron 45.0%
! TGTTTGCACTTTTGCATCCC+AGG - chr5_4:7423753-7423772 None:intergenic 45.0%
! GGGATGCAAAAGTGCAAACA+TGG + chr5_4:7423753-7423772 Msa0834390:intron 45.0%
!! ATAGGATCCCAGCCGTTTTA+GGG - chr5_4:7424368-7424387 None:intergenic 45.0%
! AATGGTTGCAAATGGGCTTG+TGG + chr5_4:7424632-7424651 Msa0834390:intron 45.0%
! TTGCAAATGGGCTTGTGGAT+GGG + chr5_4:7424637-7424656 Msa0834390:intron 45.0%
GATTGAGACAAAAGGAGAGG+GGG + chr5_4:7424833-7424852 Msa0834390:intron 45.0%
ATTGAGACAAAAGGAGAGGG+GGG + chr5_4:7424834-7424853 Msa0834390:intron 45.0%
!!! GGCTTGGTTGGCCTAATTTT+AGG - chr5_4:7424891-7424910 None:intergenic 45.0%
AGCAAAGAGGGAGTTTGCAT+AGG + chr5_4:7425218-7425237 Msa0834390:intron 45.0%
GCAAAGAGGGAGTTTGCATA+GGG + chr5_4:7425219-7425238 Msa0834390:intron 45.0%
!! CTTCTTGTGGAGGCATCTTT+AGG - chr5_4:7425287-7425306 None:intergenic 45.0%
!! GTGATGGTGCTTTTGCTTCT+GGG - chr5_4:7425314-7425333 None:intergenic 45.0%
!! TGTGATGGTGCTTTTGCTTC+TGG - chr5_4:7425315-7425334 None:intergenic 45.0%
CCTATAGCCTCTTGGATCAA+AGG - chr5_4:7425342-7425361 None:intergenic 45.0%
CCTTTGATCCAAGAGGCTAT+AGG + chr5_4:7425339-7425358 Msa0834390:intron 45.0%
TTGATCCAAGAGGCTATAGG+AGG + chr5_4:7425342-7425361 Msa0834390:intron 45.0%
ATAACTCGGTTGCCCATATC+TGG - chr5_4:7425494-7425513 None:intergenic 45.0%
AGATATGGGCAACCGAGTTA+TGG + chr5_4:7425493-7425512 Msa0834390:intron 45.0%
GATATGGGCAACCGAGTTAT+GGG + chr5_4:7425494-7425513 Msa0834390:intron 45.0%
TAACTCGGTTGCCCATAACT+CGG - chr5_4:7425508-7425527 None:intergenic 45.0%
AACCTTTGTCTTTGCCCAAG+TGG + chr5_4:7425717-7425736 Msa0834390:intron 45.0%
GCAAGTTGCAACCACCAAAA+TGG + chr5_4:7425822-7425841 Msa0834390:intron 45.0%
! AGGTCCCATATCCATTTTGG+TGG - chr5_4:7425836-7425855 None:intergenic 45.0%
!! TGAGACAGAAGTGTTGGGTT+GGG - chr5_4:7425859-7425878 None:intergenic 45.0%
!! TTGAGACAGAAGTGTTGGGT+TGG - chr5_4:7425860-7425879 None:intergenic 45.0%
TGAGAGTGAAGAGAAAGCAG+TGG - chr5_4:7425993-7426012 None:intergenic 45.0%
AAGGGAGGGAGTCCTAAAAT+TGG - chr5_4:7426965-7426984 None:intergenic 45.0%
GACTTTCTCGCCTTAAAGGT+AGG + chr5_4:7427235-7427254 Msa0834390:three_prime_UTR 45.0%
CGCCTTAAAGGTAGGGAATT+TGG + chr5_4:7427243-7427262 Msa0834390:three_prime_UTR 45.0%
GTTTCTGCAGAATTGCTGCA+AGG + chr5_4:7427610-7427629 Msa0834390:three_prime_UTR 45.0%
GGCTTATTAAGGAATGCTGC+TGG - chr5_4:7427657-7427676 None:intergenic 45.0%
ATCCATGTCATGGCTATCCT+TGG + chr5_4:7427686-7427705 Msa0834390:three_prime_UTR 45.0%
GATTTGTGTAGCGGTGATTG+TGG - chr5_4:7427714-7427733 None:intergenic 45.0%
!!! CATTTTTTTATAATTTTTTT+TGG - chr5_4:7424195-7424214 None:intergenic 5.0%
!! GGCTTCACTTCATCGGTTCT+TGG + chr5_4:7420874-7420893 Msa0834390:CDS 50.0%
CTTCTCCAGAATTGCTGCCA+AGG + chr5_4:7421330-7421349 Msa0834390:intron 50.0%
!! CGGGGTTAGTTTAGGTGAAC+TGG - chr5_4:7422081-7422100 None:intergenic 50.0%
GACCCGGGTTCAAATACCAA+CGG + chr5_4:7422357-7422376 Msa0834390:intron 50.0%
TGTTGAACTGTGAAGGTGGG+AGG + chr5_4:7422464-7422483 Msa0834390:intron 50.0%
AGTGTTCGGGGTTCGAACTT+CGG + chr5_4:7422867-7422886 Msa0834390:intron 50.0%
CCAACTGAGTTAAGCTCACG+GGG + chr5_4:7422918-7422937 Msa0834390:intron 50.0%
GAGACTACCGACACATCATC+GGG + chr5_4:7423174-7423193 Msa0834390:intron 50.0%
GAAGGATCCCGATGATGTGT+CGG - chr5_4:7423184-7423203 None:intergenic 50.0%
GGCAAGTTTGCGGTATACTG+TGG - chr5_4:7423359-7423378 None:intergenic 50.0%
CGATCAAGGATACCTCAGTG+GGG - chr5_4:7423428-7423447 None:intergenic 50.0%
GACGATCAAGGATACCTCAG+TGG - chr5_4:7423430-7423449 None:intergenic 50.0%
! CTGAGGTATCCTTGATCGTC+TGG + chr5_4:7423430-7423449 Msa0834390:intron 50.0%
AGGTATCCTTGATCGTCTGG+CGG + chr5_4:7423433-7423452 Msa0834390:intron 50.0%
! GCTAAGGCATCAACTCTTCC+TGG + chr5_4:7423732-7423751 Msa0834390:intron 50.0%
!! CATAGGATCCCAGCCGTTTT+AGG - chr5_4:7424369-7424388 None:intergenic 50.0%
! GTTGCAAATGGGCTTGTGGA+TGG + chr5_4:7424636-7424655 Msa0834390:intron 50.0%
TTGAGACAAAAGGAGAGGGG+GGG + chr5_4:7424835-7424854 Msa0834390:intron 50.0%
TCTGGGAAAGCTTCTTGTGG+AGG - chr5_4:7425297-7425316 None:intergenic 50.0%
! GCTTCTGGGAAAGCTTCTTG+TGG - chr5_4:7425300-7425319 None:intergenic 50.0%
GGAATCCTCCTATAGCCTCT+TGG - chr5_4:7425350-7425369 None:intergenic 50.0%
GGAGTCTTTGTGATAGGGGT+TGG - chr5_4:7425473-7425492 None:intergenic 50.0%
GACCACTTGGGCAAAGACAA+AGG - chr5_4:7425722-7425741 None:intergenic 50.0%
! GGGAGGTCCCATATCCATTT+TGG - chr5_4:7425839-7425858 None:intergenic 50.0%
GGATTGAGACACGGTGACTT+TGG + chr5_4:7426845-7426864 Msa0834390:three_prime_UTR 50.0%
GACACGGTGACTTTGGTGAA+TGG + chr5_4:7426852-7426871 Msa0834390:three_prime_UTR 50.0%
TGCCAAGGATAGCCATGACA+TGG - chr5_4:7427691-7427710 None:intergenic 50.0%
TGGTGCCTTGGCAGCAATTC+TGG - chr5_4:7421338-7421357 None:intergenic 55.0%
CCCCGTGAGCTTAACTCAGT+TGG - chr5_4:7422921-7422940 None:intergenic 55.0%
AGTGGGGAGTCGGTGAAATG+TGG - chr5_4:7423412-7423431 None:intergenic 55.0%
!! ATTTCACCGACTCCCCACTG+AGG + chr5_4:7423413-7423432 Msa0834390:intron 55.0%
AGGATACCTCAGTGGGGAGT+CGG - chr5_4:7423422-7423441 None:intergenic 55.0%
TATCCTTGATCGTCTGGCGG+TGG + chr5_4:7423436-7423455 Msa0834390:intron 55.0%
AAACGGGCCCTAAAACGGCT+GGG + chr5_4:7424358-7424377 Msa0834390:intron 55.0%
!! GACAGAAGTGTTGGGTTGGG+AGG - chr5_4:7425856-7425875 None:intergenic 55.0%
TCCTAAAGTGGAGCCAGAGC+CGG + chr5_4:7427427-7427446 Msa0834390:three_prime_UTR 55.0%
!! ACTCGCACTCGGTGTATCTC+CGG - chr5_4:7427449-7427468 None:intergenic 55.0%
! TAGCGGTGATTGTGGTGCCA+AGG - chr5_4:7427706-7427725 None:intergenic 55.0%
CAAACGGGCCCTAAAACGGC+TGG + chr5_4:7424357-7424376 Msa0834390:intron 60.0%
! TCCGGCTCTGGCTCCACTTT+AGG - chr5_4:7427431-7427450 None:intergenic 60.0%
!! ACTCGGTGTATCTCCGGCTC+TGG - chr5_4:7427443-7427462 None:intergenic 60.0%
CGGCTCTCACCCGAAAGACC+CGG + chr5_4:7422341-7422360 Msa0834390:intron 65.0%
GGCTCTCACCCGAAAGACCC+GGG + chr5_4:7422342-7422361 Msa0834390:intron 65.0%
CCTCCACCGCCAGACGATCA+AGG - chr5_4:7423442-7423461 None:intergenic 65.0%
CCTTGATCGTCTGGCGGTGG+AGG + chr5_4:7423439-7423458 Msa0834390:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 7420215 7427966 7420215 ID=Msa0834390;Name=Msa0834390
chr5_4 mRNA 7420215 7427966 7420215 ID=Msa0834390-mRNA-1;Parent=Msa0834390;Name=Msa0834390-mRNA-1;_AED=0.36;_eAED=0.36;_QI=60|1|1|1|0.5|0.4|5|1173|130
chr5_4 exon 7420215 7420360 7420215 ID=Msa0834390-mRNA-1:exon:3321;Parent=Msa0834390-mRNA-1
chr5_4 exon 7420504 7420748 7420504 ID=Msa0834390-mRNA-1:exon:3322;Parent=Msa0834390-mRNA-1
chr5_4 exon 7420855 7420942 7420855 ID=Msa0834390-mRNA-1:exon:3323;Parent=Msa0834390-mRNA-1
chr5_4 exon 7426716 7427039 7426716 ID=Msa0834390-mRNA-1:exon:3324;Parent=Msa0834390-mRNA-1
chr5_4 exon 7427144 7427966 7427144 ID=Msa0834390-mRNA-1:exon:3325;Parent=Msa0834390-mRNA-1
chr5_4 five_prime_UTR 7420215 7420274 7420215 ID=Msa0834390-mRNA-1:five_prime_utr;Parent=Msa0834390-mRNA-1
chr5_4 CDS 7420275 7420360 7420275 ID=Msa0834390-mRNA-1:cds;Parent=Msa0834390-mRNA-1
chr5_4 CDS 7420504 7420748 7420504 ID=Msa0834390-mRNA-1:cds;Parent=Msa0834390-mRNA-1
chr5_4 CDS 7420855 7420916 7420855 ID=Msa0834390-mRNA-1:cds;Parent=Msa0834390-mRNA-1
chr5_4 three_prime_UTR 7420917 7420942 7420917 ID=Msa0834390-mRNA-1:three_prime_utr;Parent=Msa0834390-mRNA-1
chr5_4 three_prime_UTR 7426716 7427039 7426716 ID=Msa0834390-mRNA-1:three_prime_utr;Parent=Msa0834390-mRNA-1
chr5_4 three_prime_UTR 7427144 7427966 7427144 ID=Msa0834390-mRNA-1:three_prime_utr;Parent=Msa0834390-mRNA-1
Gene Sequence

>Msa0834390

ATGAATCATCACAACATGACACCTATGAATTTTCAACAACTTCCTCATCTCTTCCTACAAGAGATTCCTATTTTGGGAAACTCCAGTGTAATGAAGGCTAATATTAAGAAGGAAGAACCTAGATGTGCACAAATGACAATCTTTTATGATGGGAAAGTAATTGTGTTTGATGATGTTCCAGCTGAAAAAGCCAAAGACATCATGGACTTTTCCACCAAAGGAATTACTAGTACTTCACAAAACCATAATAACAACTATGCTTACTCTTCATTTCTTGCTAGAAATTCTCTTCAAGACTACCCTCAAGTACCATCTATACCTGTTATTTATGATTTACCAATGACTAGGAAGGCTTCACTTCATCGGTTCTTGGAGAAAAGGAAGGATAGGTAA
Protein sequence

>Msa0834390

MNHHNMTPMNFQQLPHLFLQEIPILGNSSVMKANIKKEEPRCAQMTIFYDGKVIVFDDVPAEKAKDIMDFSTKGITSTSQNHNNNYAYSSFLARNSLQDYPQVPSIPVIYDLPMTRKASLHRFLEKRKDR*