Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834740 | RHN49639.1 | 69.427 | 157 | 25 | 5 | 56 | 190 | 12 | 167 | 6.01e-61 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834740 | A0A396H8N5 | 69.427 | 157 | 25 | 5 | 56 | 190 | 12 | 167 | 2.87e-61 | 197 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0834740 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834740 | MtrunA17_Chr7g0276661 | 69.427 | 157 | 25 | 5 | 56 | 190 | 12 | 167 | 5.52e-65 | 197 |
| Msa0834740 | MtrunA17_Chr1g0175881 | 52.308 | 130 | 39 | 6 | 56 | 179 | 12 | 124 | 6.75e-33 | 114 |
| Msa0834740 | MtrunA17_Chr2g0281511 | 36.364 | 110 | 69 | 1 | 82 | 190 | 11 | 120 | 7.43e-27 | 99.0 |
| Msa0834740 | MtrunA17_Chr2g0309121 | 38.462 | 117 | 67 | 3 | 75 | 190 | 7 | 119 | 6.76e-26 | 96.7 |
| Msa0834740 | MtrunA17_Chr8g0356961 | 31.313 | 99 | 65 | 1 | 95 | 190 | 77 | 175 | 1.81e-13 | 65.5 |
| Msa0834740 | MtrunA17_Chr0c01g0489371 | 33.708 | 89 | 56 | 1 | 95 | 180 | 226 | 314 | 4.65e-13 | 66.2 |
| Msa0834740 | MtrunA17_Chr3g0081891 | 34.921 | 63 | 41 | 0 | 82 | 144 | 11 | 73 | 2.63e-11 | 57.4 |
| Msa0834740 | MtrunA17_Chr6g0485871 | 32.039 | 103 | 66 | 3 | 79 | 177 | 196 | 298 | 4.04e-11 | 60.8 |
| Msa0834740 | MtrunA17_Chr5g0434641 | 31.461 | 89 | 58 | 1 | 95 | 180 | 210 | 298 | 9.91e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGATGGTTTGAGTTTGTT+AGG | 0.273672 | 5_4:-7888444 | Msa0834740:CDS |
| TGAAGATCGGGTCATTTGAT+TGG | 0.369943 | 5_4:-7889126 | Msa0834740:CDS |
| CGAATTGTTGATGATGAAAC+TGG | 0.373851 | 5_4:-7888526 | Msa0834740:CDS |
| GAATGTGAAGTTCGTGATAA+AGG | 0.381874 | 5_4:-7888493 | Msa0834740:CDS |
| GGCTGCTGGACGGAGAGTTC+TGG | 0.386406 | 5_4:-7888711 | Msa0834740:intron |
| TGGCCATCGACTTCTTCATT+TGG | 0.387700 | 5_4:+7888806 | None:intergenic |
| AAGTTCGTGATAAAGGAAAT+TGG | 0.388847 | 5_4:-7888486 | Msa0834740:CDS |
| TTTGAAATTGTGCAAATACT+TGG | 0.402550 | 5_4:+7888786 | None:intergenic |
| ATTAGTTCTGCTACGGCTGC+TGG | 0.408831 | 5_4:-7888725 | Msa0834740:CDS |
| GAAGATCGGGTCATTTGATT+GGG | 0.425740 | 5_4:-7889125 | Msa0834740:CDS |
| CGAAGAAGAAGTTGAAGATC+GGG | 0.445939 | 5_4:-7889138 | Msa0834740:CDS |
| ATGAAATGTGCGGCGGATGC+AGG | 0.449012 | 5_4:-7889189 | Msa0834740:CDS |
| TGGATGGTTTGAGTTTGTTA+GGG | 0.484898 | 5_4:-7888443 | Msa0834740:CDS |
| CTGCAGCGATGTAATTGATC+CGG | 0.509939 | 5_4:-7888861 | Msa0834740:intron |
| CTTCTTCGTCCATCTCAAAA+CGG | 0.535091 | 5_4:+7889153 | None:intergenic |
| ACGAAGAAGAAGTTGAAGAT+CGG | 0.540825 | 5_4:-7889139 | Msa0834740:CDS |
| CGATGTAATTGATCCGGAGT+TGG | 0.544205 | 5_4:-7888855 | Msa0834740:CDS |
| CAATCTTATTGCCGTCAAAA+CGG | 0.544280 | 5_4:+7889093 | None:intergenic |
| TTATTGCCGTCAAAACGGTT+CGG | 0.545486 | 5_4:+7889098 | None:intergenic |
| CTTTGAATTGCAATCTTCCG+AGG | 0.557056 | 5_4:+7888574 | None:intergenic |
| TCGTGATAAAGGAAATTGGA+TGG | 0.565929 | 5_4:-7888482 | Msa0834740:CDS |
| GGTTTCAATTCGTCCAACTC+CGG | 0.567151 | 5_4:+7888842 | None:intergenic |
| AGAAATACGTTGGAAGTGGA+TGG | 0.575514 | 5_4:-7888459 | Msa0834740:CDS |
| ATGGAGAAATACGTTGGAAG+TGG | 0.576439 | 5_4:-7888463 | Msa0834740:CDS |
| GCATAGTATTAGTTCTGCTA+CGG | 0.580120 | 5_4:-7888732 | Msa0834740:CDS |
| AATTGGATGGAGAAATACGT+TGG | 0.583531 | 5_4:-7888469 | Msa0834740:CDS |
| CCATCTCAAAACGGCGACGA+TGG | 0.584489 | 5_4:+7889162 | None:intergenic |
| AGGGCAAAAGAACTCAAAGA+AGG | 0.584629 | 5_4:-7888424 | Msa0834740:CDS |
| TTAATGTGTAGCGTATTCCT+CGG | 0.586314 | 5_4:-7888591 | Msa0834740:intron |
| GCATCCGCCGCACATTTCAT+CGG | 0.590420 | 5_4:+7889192 | None:intergenic |
| GATACAAATAATTTGTGTGG+AGG | 0.593345 | 5_4:+7888373 | None:intergenic |
| ACTGATACAAATAATTTGTG+TGG | 0.607437 | 5_4:+7888370 | None:intergenic |
| GTTCTGCTACGGCTGCTGGA+CGG | 0.628877 | 5_4:-7888721 | Msa0834740:CDS |
| AATCCAAATGAAGAAGTCGA+TGG | 0.671453 | 5_4:-7888809 | Msa0834740:CDS |
| ATGGCGACCGATGAAATGTG+CGG | 0.726557 | 5_4:-7889199 | Msa0834740:CDS |
| GCGACCGATGAAATGTGCGG+CGG | 0.753822 | 5_4:-7889196 | Msa0834740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTTTTTTAATCATC+TGG | - | chr5_4:7888652-7888671 | Msa0834740:intron | 15.0% |
| !!! | CAATTTCAAAATTTTCAAAA+CGG | - | chr5_4:7888786-7888805 | Msa0834740:CDS | 15.0% |
| !!! | GTTTTTTATTTTATTTTTGC+TGG | - | chr5_4:7888892-7888911 | Msa0834740:intron | 15.0% |
| !!! | TTGTTTTTTTTTTAATCATC+TGG | - | chr5_4:7888652-7888671 | Msa0834740:intron | 15.0% |
| !!! | CAATTTCAAAATTTTCAAAA+CGG | - | chr5_4:7888786-7888805 | Msa0834740:CDS | 15.0% |
| !!! | GTTTTTTATTTTATTTTTGC+TGG | - | chr5_4:7888892-7888911 | Msa0834740:intron | 15.0% |
| ! | CTTAAAATAGCCTTCTAAAT+GGG | + | chr5_4:7888534-7888553 | None:intergenic | 25.0% |
| !!! | CATTTAGAAGGCTATTTTAA+GGG | - | chr5_4:7888533-7888552 | Msa0834740:CDS | 25.0% |
| !! | TTTGAAATTGTGCAAATACT+TGG | + | chr5_4:7888776-7888795 | None:intergenic | 25.0% |
| !! | ACTGATACAAATAATTTGTG+TGG | + | chr5_4:7889192-7889211 | None:intergenic | 25.0% |
| ! | CTTAAAATAGCCTTCTAAAT+GGG | + | chr5_4:7888534-7888553 | None:intergenic | 25.0% |
| !!! | CATTTAGAAGGCTATTTTAA+GGG | - | chr5_4:7888533-7888552 | Msa0834740:CDS | 25.0% |
| !! | TTTGAAATTGTGCAAATACT+TGG | + | chr5_4:7888776-7888795 | None:intergenic | 25.0% |
| !! | ACTGATACAAATAATTTGTG+TGG | + | chr5_4:7889192-7889211 | None:intergenic | 25.0% |
| !!! | AAGATTGGGCTTTTTAGTTA+TGG | - | chr5_4:7888482-7888501 | Msa0834740:CDS | 30.0% |
| CCTTAAAATAGCCTTCTAAA+TGG | + | chr5_4:7888535-7888554 | None:intergenic | 30.0% | |
| !! | CCATTTAGAAGGCTATTTTA+AGG | - | chr5_4:7888532-7888551 | Msa0834740:CDS | 30.0% |
| ! | AAAACGGTGATCATACTTTT+TGG | - | chr5_4:7888802-7888821 | Msa0834740:CDS | 30.0% |
| AAGTTCGTGATAAAGGAAAT+TGG | - | chr5_4:7889073-7889092 | Msa0834740:CDS | 30.0% | |
| ! | GATACAAATAATTTGTGTGG+AGG | + | chr5_4:7889189-7889208 | None:intergenic | 30.0% |
| !!! | AAGATTGGGCTTTTTAGTTA+TGG | - | chr5_4:7888482-7888501 | Msa0834740:CDS | 30.0% |
| CCTTAAAATAGCCTTCTAAA+TGG | + | chr5_4:7888535-7888554 | None:intergenic | 30.0% | |
| !! | CCATTTAGAAGGCTATTTTA+AGG | - | chr5_4:7888532-7888551 | Msa0834740:CDS | 30.0% |
| ! | AAAACGGTGATCATACTTTT+TGG | - | chr5_4:7888802-7888821 | Msa0834740:CDS | 30.0% |
| AAGTTCGTGATAAAGGAAAT+TGG | - | chr5_4:7889073-7889092 | Msa0834740:CDS | 30.0% | |
| ! | GATACAAATAATTTGTGTGG+AGG | + | chr5_4:7889189-7889208 | None:intergenic | 30.0% |
| ACGAAGAAGAAGTTGAAGAT+CGG | - | chr5_4:7888420-7888439 | Msa0834740:CDS | 35.0% | |
| CAATCTTATTGCCGTCAAAA+CGG | + | chr5_4:7888469-7888488 | None:intergenic | 35.0% | |
| !! | GTTTTGACGGCAATAAGATT+GGG | - | chr5_4:7888468-7888487 | Msa0834740:CDS | 35.0% |
| TTAAGGGTTGTTGTGAATCT+TGG | - | chr5_4:7888549-7888568 | Msa0834740:CDS | 35.0% | |
| ACGTCTGAGAAGAAAATTCT+AGG | - | chr5_4:7888580-7888599 | Msa0834740:CDS | 35.0% | |
| CGTCTGAGAAGAAAATTCTA+GGG | - | chr5_4:7888581-7888600 | Msa0834740:CDS | 35.0% | |
| TGAAAATGTCTTCTTCTAGC+AGG | - | chr5_4:7888612-7888631 | Msa0834740:intron | 35.0% | |
| ! | TCATTTGGATTTTCGTCTAC+AGG | + | chr5_4:7888741-7888760 | None:intergenic | 35.0% |
| AATCCAAATGAAGAAGTCGA+TGG | - | chr5_4:7888750-7888769 | Msa0834740:CDS | 35.0% | |
| !! | GCATAGTATTAGTTCTGCTA+CGG | - | chr5_4:7888827-7888846 | Msa0834740:CDS | 35.0% |
| TTAATGTGTAGCGTATTCCT+CGG | - | chr5_4:7888968-7888987 | Msa0834740:intron | 35.0% | |
| !! | CGAATTGTTGATGATGAAAC+TGG | - | chr5_4:7889033-7889052 | Msa0834740:intron | 35.0% |
| GAATGTGAAGTTCGTGATAA+AGG | - | chr5_4:7889066-7889085 | Msa0834740:CDS | 35.0% | |
| TCGTGATAAAGGAAATTGGA+TGG | - | chr5_4:7889077-7889096 | Msa0834740:CDS | 35.0% | |
| AATTGGATGGAGAAATACGT+TGG | - | chr5_4:7889090-7889109 | Msa0834740:CDS | 35.0% | |
| !! | TGGATGGTTTGAGTTTGTTA+GGG | - | chr5_4:7889116-7889135 | Msa0834740:CDS | 35.0% |
| ACGAAGAAGAAGTTGAAGAT+CGG | - | chr5_4:7888420-7888439 | Msa0834740:CDS | 35.0% | |
| CAATCTTATTGCCGTCAAAA+CGG | + | chr5_4:7888469-7888488 | None:intergenic | 35.0% | |
| !! | GTTTTGACGGCAATAAGATT+GGG | - | chr5_4:7888468-7888487 | Msa0834740:CDS | 35.0% |
| TTAAGGGTTGTTGTGAATCT+TGG | - | chr5_4:7888549-7888568 | Msa0834740:CDS | 35.0% | |
| ACGTCTGAGAAGAAAATTCT+AGG | - | chr5_4:7888580-7888599 | Msa0834740:CDS | 35.0% | |
| CGTCTGAGAAGAAAATTCTA+GGG | - | chr5_4:7888581-7888600 | Msa0834740:CDS | 35.0% | |
| TGAAAATGTCTTCTTCTAGC+AGG | - | chr5_4:7888612-7888631 | Msa0834740:intron | 35.0% | |
| ! | TCATTTGGATTTTCGTCTAC+AGG | + | chr5_4:7888741-7888760 | None:intergenic | 35.0% |
| AATCCAAATGAAGAAGTCGA+TGG | - | chr5_4:7888750-7888769 | Msa0834740:CDS | 35.0% | |
| !! | GCATAGTATTAGTTCTGCTA+CGG | - | chr5_4:7888827-7888846 | Msa0834740:CDS | 35.0% |
| TTAATGTGTAGCGTATTCCT+CGG | - | chr5_4:7888968-7888987 | Msa0834740:intron | 35.0% | |
| !! | CGAATTGTTGATGATGAAAC+TGG | - | chr5_4:7889033-7889052 | Msa0834740:intron | 35.0% |
| GAATGTGAAGTTCGTGATAA+AGG | - | chr5_4:7889066-7889085 | Msa0834740:CDS | 35.0% | |
| TCGTGATAAAGGAAATTGGA+TGG | - | chr5_4:7889077-7889096 | Msa0834740:CDS | 35.0% | |
| AATTGGATGGAGAAATACGT+TGG | - | chr5_4:7889090-7889109 | Msa0834740:CDS | 35.0% | |
| !! | TGGATGGTTTGAGTTTGTTA+GGG | - | chr5_4:7889116-7889135 | Msa0834740:CDS | 35.0% |
| CTTCTTCGTCCATCTCAAAA+CGG | + | chr5_4:7888409-7888428 | None:intergenic | 40.0% | |
| CGAAGAAGAAGTTGAAGATC+GGG | - | chr5_4:7888421-7888440 | Msa0834740:CDS | 40.0% | |
| TGAAGATCGGGTCATTTGAT+TGG | - | chr5_4:7888433-7888452 | Msa0834740:CDS | 40.0% | |
| GAAGATCGGGTCATTTGATT+GGG | - | chr5_4:7888434-7888453 | Msa0834740:CDS | 40.0% | |
| TTATTGCCGTCAAAACGGTT+CGG | + | chr5_4:7888464-7888483 | None:intergenic | 40.0% | |
| !! | CGTTTTGACGGCAATAAGAT+TGG | - | chr5_4:7888467-7888486 | Msa0834740:CDS | 40.0% |
| !!! | TGGGCTTTTTAGTTATGGAC+CGG | - | chr5_4:7888487-7888506 | Msa0834740:CDS | 40.0% |
| ! | TTTGCTGGAGTATTTGCACA+TGG | - | chr5_4:7888907-7888926 | Msa0834740:intron | 40.0% |
| ! | TTGCTGGAGTATTTGCACAT+GGG | - | chr5_4:7888908-7888927 | Msa0834740:intron | 40.0% |
| CTTTGAATTGCAATCTTCCG+AGG | + | chr5_4:7888988-7889007 | None:intergenic | 40.0% | |
| ATGGAGAAATACGTTGGAAG+TGG | - | chr5_4:7889096-7889115 | Msa0834740:CDS | 40.0% | |
| AGAAATACGTTGGAAGTGGA+TGG | - | chr5_4:7889100-7889119 | Msa0834740:CDS | 40.0% | |
| ! | GTGGATGGTTTGAGTTTGTT+AGG | - | chr5_4:7889115-7889134 | Msa0834740:CDS | 40.0% |
| AGGGCAAAAGAACTCAAAGA+AGG | - | chr5_4:7889135-7889154 | Msa0834740:CDS | 40.0% | |
| CTTCTTCGTCCATCTCAAAA+CGG | + | chr5_4:7888409-7888428 | None:intergenic | 40.0% | |
| CGAAGAAGAAGTTGAAGATC+GGG | - | chr5_4:7888421-7888440 | Msa0834740:CDS | 40.0% | |
| TGAAGATCGGGTCATTTGAT+TGG | - | chr5_4:7888433-7888452 | Msa0834740:CDS | 40.0% | |
| GAAGATCGGGTCATTTGATT+GGG | - | chr5_4:7888434-7888453 | Msa0834740:CDS | 40.0% | |
| TTATTGCCGTCAAAACGGTT+CGG | + | chr5_4:7888464-7888483 | None:intergenic | 40.0% | |
| !! | CGTTTTGACGGCAATAAGAT+TGG | - | chr5_4:7888467-7888486 | Msa0834740:CDS | 40.0% |
| !!! | TGGGCTTTTTAGTTATGGAC+CGG | - | chr5_4:7888487-7888506 | Msa0834740:CDS | 40.0% |
| ! | TTTGCTGGAGTATTTGCACA+TGG | - | chr5_4:7888907-7888926 | Msa0834740:intron | 40.0% |
| ! | TTGCTGGAGTATTTGCACAT+GGG | - | chr5_4:7888908-7888927 | Msa0834740:intron | 40.0% |
| CTTTGAATTGCAATCTTCCG+AGG | + | chr5_4:7888988-7889007 | None:intergenic | 40.0% | |
| ATGGAGAAATACGTTGGAAG+TGG | - | chr5_4:7889096-7889115 | Msa0834740:CDS | 40.0% | |
| AGAAATACGTTGGAAGTGGA+TGG | - | chr5_4:7889100-7889119 | Msa0834740:CDS | 40.0% | |
| ! | GTGGATGGTTTGAGTTTGTT+AGG | - | chr5_4:7889115-7889134 | Msa0834740:CDS | 40.0% |
| AGGGCAAAAGAACTCAAAGA+AGG | - | chr5_4:7889135-7889154 | Msa0834740:CDS | 40.0% | |
| ! | GGTTTTCCGAACCGTTTTGA+CGG | - | chr5_4:7888455-7888474 | Msa0834740:CDS | 45.0% |
| !!! | GGGCTTTTTAGTTATGGACC+GGG | - | chr5_4:7888488-7888507 | Msa0834740:CDS | 45.0% |
| ATGGACCGGGCAAAAATGAA+TGG | - | chr5_4:7888501-7888520 | Msa0834740:CDS | 45.0% | |
| TGGACCGGGCAAAAATGAAT+GGG | - | chr5_4:7888502-7888521 | Msa0834740:CDS | 45.0% | |
| !! | GTGACCCATTCATTTTTGCC+CGG | + | chr5_4:7888509-7888528 | None:intergenic | 45.0% |
| GGGCAAAAATGAATGGGTCA+CGG | - | chr5_4:7888508-7888527 | Msa0834740:CDS | 45.0% | |
| CTGCAGCGATGTAATTGATC+CGG | - | chr5_4:7888698-7888717 | Msa0834740:intron | 45.0% | |
| CGATGTAATTGATCCGGAGT+TGG | - | chr5_4:7888704-7888723 | Msa0834740:intron | 45.0% | |
| GGTTTCAATTCGTCCAACTC+CGG | + | chr5_4:7888720-7888739 | None:intergenic | 45.0% | |
| !! | TGGCCATCGACTTCTTCATT+TGG | + | chr5_4:7888756-7888775 | None:intergenic | 45.0% |
| ! | GGTTTTCCGAACCGTTTTGA+CGG | - | chr5_4:7888455-7888474 | Msa0834740:CDS | 45.0% |
| !!! | GGGCTTTTTAGTTATGGACC+GGG | - | chr5_4:7888488-7888507 | Msa0834740:CDS | 45.0% |
| ATGGACCGGGCAAAAATGAA+TGG | - | chr5_4:7888501-7888520 | Msa0834740:CDS | 45.0% | |
| TGGACCGGGCAAAAATGAAT+GGG | - | chr5_4:7888502-7888521 | Msa0834740:CDS | 45.0% | |
| !! | GTGACCCATTCATTTTTGCC+CGG | + | chr5_4:7888509-7888528 | None:intergenic | 45.0% |
| GGGCAAAAATGAATGGGTCA+CGG | - | chr5_4:7888508-7888527 | Msa0834740:CDS | 45.0% | |
| CTGCAGCGATGTAATTGATC+CGG | - | chr5_4:7888698-7888717 | Msa0834740:intron | 45.0% | |
| CGATGTAATTGATCCGGAGT+TGG | - | chr5_4:7888704-7888723 | Msa0834740:intron | 45.0% | |
| GGTTTCAATTCGTCCAACTC+CGG | + | chr5_4:7888720-7888739 | None:intergenic | 45.0% | |
| !! | TGGCCATCGACTTCTTCATT+TGG | + | chr5_4:7888756-7888775 | None:intergenic | 45.0% |
| ATGGCGACCGATGAAATGTG+CGG | - | chr5_4:7888360-7888379 | Msa0834740:CDS | 50.0% | |
| !! | ATTAGTTCTGCTACGGCTGC+TGG | - | chr5_4:7888834-7888853 | Msa0834740:CDS | 50.0% |
| ! | CTGGAGTATTTGCACATGGG+TGG | - | chr5_4:7888911-7888930 | Msa0834740:intron | 50.0% |
| GAGTATTTGCACATGGGTGG+TGG | - | chr5_4:7888914-7888933 | Msa0834740:intron | 50.0% | |
| ATGGCGACCGATGAAATGTG+CGG | - | chr5_4:7888360-7888379 | Msa0834740:CDS | 50.0% | |
| !! | ATTAGTTCTGCTACGGCTGC+TGG | - | chr5_4:7888834-7888853 | Msa0834740:CDS | 50.0% |
| ! | CTGGAGTATTTGCACATGGG+TGG | - | chr5_4:7888911-7888930 | Msa0834740:intron | 50.0% |
| GAGTATTTGCACATGGGTGG+TGG | - | chr5_4:7888914-7888933 | Msa0834740:intron | 50.0% | |
| GCATCCGCCGCACATTTCAT+CGG | + | chr5_4:7888370-7888389 | None:intergenic | 55.0% | |
| ATGAAATGTGCGGCGGATGC+AGG | - | chr5_4:7888370-7888389 | Msa0834740:CDS | 55.0% | |
| CCATCTCAAAACGGCGACGA+TGG | + | chr5_4:7888400-7888419 | None:intergenic | 55.0% | |
| !!! | CCATCGTCGCCGTTTTGAGA+TGG | - | chr5_4:7888397-7888416 | Msa0834740:CDS | 55.0% |
| TGGGTCACGGCCCATTTAGA+AGG | - | chr5_4:7888521-7888540 | Msa0834740:CDS | 55.0% | |
| GCATCCGCCGCACATTTCAT+CGG | + | chr5_4:7888370-7888389 | None:intergenic | 55.0% | |
| ATGAAATGTGCGGCGGATGC+AGG | - | chr5_4:7888370-7888389 | Msa0834740:CDS | 55.0% | |
| CCATCTCAAAACGGCGACGA+TGG | + | chr5_4:7888400-7888419 | None:intergenic | 55.0% | |
| !!! | CCATCGTCGCCGTTTTGAGA+TGG | - | chr5_4:7888397-7888416 | Msa0834740:CDS | 55.0% |
| TGGGTCACGGCCCATTTAGA+AGG | - | chr5_4:7888521-7888540 | Msa0834740:CDS | 55.0% | |
| GCGACCGATGAAATGTGCGG+CGG | - | chr5_4:7888363-7888382 | Msa0834740:CDS | 60.0% | |
| GTTCTGCTACGGCTGCTGGA+CGG | - | chr5_4:7888838-7888857 | Msa0834740:CDS | 60.0% | |
| ! | GCTGGACGGAGAGTTCTGGT+TGG | - | chr5_4:7888852-7888871 | Msa0834740:CDS | 60.0% |
| ! | GCACATGGGTGGTGGCTTTC+TGG | - | chr5_4:7888922-7888941 | Msa0834740:intron | 60.0% |
| GCGACCGATGAAATGTGCGG+CGG | - | chr5_4:7888363-7888382 | Msa0834740:CDS | 60.0% | |
| GTTCTGCTACGGCTGCTGGA+CGG | - | chr5_4:7888838-7888857 | Msa0834740:CDS | 60.0% | |
| ! | GCTGGACGGAGAGTTCTGGT+TGG | - | chr5_4:7888852-7888871 | Msa0834740:CDS | 60.0% |
| ! | GCACATGGGTGGTGGCTTTC+TGG | - | chr5_4:7888922-7888941 | Msa0834740:intron | 60.0% |
| GGCTGCTGGACGGAGAGTTC+TGG | - | chr5_4:7888848-7888867 | Msa0834740:CDS | 65.0% | |
| GGCTGCTGGACGGAGAGTTC+TGG | - | chr5_4:7888848-7888867 | Msa0834740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7888360 | 7889221 | 7888360 | ID=Msa0834740;Name=Msa0834740 |
| chr5_4 | mRNA | 7888360 | 7889221 | 7888360 | ID=Msa0834740-mRNA-1;Parent=Msa0834740;Name=Msa0834740-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|3|0|190 |
| chr5_4 | exon | 7889058 | 7889221 | 7889058 | ID=Msa0834740-mRNA-1:exon:3586;Parent=Msa0834740-mRNA-1 |
| chr5_4 | exon | 7888712 | 7888877 | 7888712 | ID=Msa0834740-mRNA-1:exon:3585;Parent=Msa0834740-mRNA-1 |
| chr5_4 | exon | 7888360 | 7888602 | 7888360 | ID=Msa0834740-mRNA-1:exon:3584;Parent=Msa0834740-mRNA-1 |
| chr5_4 | CDS | 7889058 | 7889221 | 7889058 | ID=Msa0834740-mRNA-1:cds;Parent=Msa0834740-mRNA-1 |
| chr5_4 | CDS | 7888712 | 7888877 | 7888712 | ID=Msa0834740-mRNA-1:cds;Parent=Msa0834740-mRNA-1 |
| chr5_4 | CDS | 7888360 | 7888602 | 7888360 | ID=Msa0834740-mRNA-1:cds;Parent=Msa0834740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
