AlfalfaGEDB | Msa0835620

M. sativa cultivar zhongmu-4 / Msa0835620

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0835620	XP_024632725.2	63.636	110	39	1	3	112	1	109	1.92e-38	147

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0835620	A4PRH7	91.379	58	5	0	1	58	1	58	6.23e-29	108

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TFs/TRs:

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Gene ID	Type	Classification
Msa0835620	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 12 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGTGGTTTCTCAATC+CGG	0.480907	5_4:-9000035	Msa0835620:CDS
AATGGGATGATATACATAGG+AGG	0.613939	5_4:-8999990	Msa0835620:CDS
AGAAAGCATTGCCTAATAAA+AGG	0.305675	5_4:+9000099	None:intergenic
AGTGGTTTCTCAATCCGGAA+AGG	0.654585	5_4:-9000030	Msa0835620:CDS
ATGGGATGATATACATAGGA+GGG	0.548165	5_4:-8999989	Msa0835620:CDS
CTCAATCAATTGTTCTCATG+TGG	0.560735	5_4:-9000523	Msa0835620:CDS
CTCAGTGAGGAAGAAGCTTT+CGG	0.314082	5_4:-9000078	Msa0835620:CDS
GAGAATTATGCCAAAAGGAG+TGG	0.544730	5_4:-9000048	Msa0835620:CDS
GATTGAGAAACCACTCCTTT+TGG	0.331753	5_4:+9000038	None:intergenic
TAGGCAATGCTTTCTCAGTG+AGG	0.672173	5_4:-9000091	Msa0835620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGAGAACATATGAGAAAA+AGG	+	chr5_4:9000069-9000088	None:intergenic	30.0%
GGTATATAATGTGTGACATA+AGG	+	chr5_4:9000097-9000116	None:intergenic	30.0%
AAGGAAAGAAATTGAGAACA+AGG	+	chr5_4:9000123-9000142	None:intergenic	30.0%
TAATATGTGTGTGTGACTTA+AGG	+	chr5_4:9000142-9000161	None:intergenic	30.0%
CTCAATCAATTGTTCTCATG+TGG	-	chr5_4:8999995-9000014	Msa0835620:CDS	35.0%
AAGAAATTGAGAACAAGGTG+TGG	+	chr5_4:9000118-9000137	None:intergenic	35.0%
AATGGGATGATATACATAGG+AGG	-	chr5_4:9000528-9000547	Msa0835620:CDS	35.0%
ATGGGATGATATACATAGGA+GGG	-	chr5_4:9000529-9000548	Msa0835620:CDS	35.0%
GAGAATTATGCCAAAAGGAG+TGG	-	chr5_4:9000470-9000489	Msa0835620:intron	40.0%
AAAGGAGTGGTTTCTCAATC+CGG	-	chr5_4:9000483-9000502	Msa0835620:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	8999972	9000568	8999972	ID=Msa0835620;Name=Msa0835620
chr5_4	mRNA	8999972	9000568	8999972	ID=Msa0835620-mRNA-1;Parent=Msa0835620;Name=Msa0835620-mRNA-1;_AED=0.42;_eAED=0.43;_QI=0\|0\|0\|1\|1\|1\|2\|0\|112
chr5_4	exon	9000510	9000568	9000510	ID=Msa0835620-mRNA-1:exon:3990;Parent=Msa0835620-mRNA-1
chr5_4	exon	8999972	9000251	8999972	ID=Msa0835620-mRNA-1:exon:3989;Parent=Msa0835620-mRNA-1
chr5_4	CDS	9000510	9000568	9000510	ID=Msa0835620-mRNA-1:cds;Parent=Msa0835620-mRNA-1
chr5_4	CDS	8999972	9000251	8999972	ID=Msa0835620-mRNA-1:cds;Parent=Msa0835620-mRNA-1

Gene Sequence	>Msa0835620 ATGGATATGGTAAGTGCTCAAAACTCAATCAATTGTTCTCATGTGGCAGCTATAGCACAGTTAGGAGTCACAGATTTAATTGATTTGAACGATGTTCCAAATAATGAACCATGTGATAACTCAGAAAATGAAGTAATTGATTTGAGCAACAACAAGCAAGAAACAATTACTATCGAAAATTGTTTTGAACCTTTTATTAGGCAATGCTTTCTCAGTGAGGAAGAAGCTTTCGGATTTTATGAGAATTATGCCAAAAGGAGTGGTTTCTCAATCCGGAAAGGTCGATTTCTTAAAAAAAAATGGGATGATATACATAGGAGGGATTTTTTCTGTCACTGA
Protein sequence	>Msa0835620 MDMVSAQNSINCSHVAAIAQLGVTDLIDLNDVPNNEPCDNSENEVIDLSNNKQETITIENCFEPFIRQCFLSEEEAFGFYENYAKRSGFSIRKGRFLKKKWDDIHRRDFFCH*