AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835980 MtrunA17_Chr5g0401821 93.727 271 16 1 1 270 1 271 2.11e-177 489
Msa0835980 MtrunA17_Chr4g0053281 56.471 340 76 9 1 270 1 338 2.59e-103 304
Msa0835980 MtrunA17_Chr4g0071521 44.118 306 106 9 19 266 15 313 7.03e-66 207
Msa0835980 MtrunA17_Chr1g0147881 57.554 139 52 2 138 270 203 340 1.94e-51 171
Msa0835980 MtrunA17_Chr1g0184691 72.897 107 29 0 150 256 245 351 1.74e-43 151
Msa0835980 MtrunA17_Chr3g0139021 50.336 149 73 1 116 264 233 380 2.38e-42 149
Msa0835980 MtrunA17_Chr7g0228941 67.532 77 25 0 179 255 33 109 1.16e-34 121
Msa0835980 MtrunA17_Chr2g0319961 45.299 117 51 2 161 264 30 146 4.15e-28 108
Msa0835980 MtrunA17_Chr7g0270051 55.056 89 36 1 171 255 22 110 6.05e-28 108
Msa0835980 MtrunA17_Chr2g0284321 54.651 86 38 1 173 257 9 94 1.90e-27 105
Msa0835980 MtrunA17_Chr8g0379461 50.538 93 39 1 174 259 45 137 2.54e-27 105
Msa0835980 MtrunA17_Chr8g0348311 60.241 83 28 1 173 255 135 212 4.39e-27 107
Msa0835980 MtrunA17_Chr7g0248691 60.241 83 28 1 173 255 134 211 6.52e-27 106
Msa0835980 MtrunA17_Chr2g0293481 55.789 95 37 2 166 255 230 324 8.64e-27 108
Msa0835980 MtrunA17_Chr3g0101131 49.495 99 41 2 173 263 382 479 3.63e-24 101
Msa0835980 MtrunA17_Chr1g0202461 56.471 85 31 2 173 256 240 319 1.32e-23 98.6
Msa0835980 MtrunA17_Chr5g0445311 48.958 96 37 2 173 257 328 422 2.00e-23 99.4
Msa0835980 MtrunA17_Chr2g0289181 56.061 66 29 0 191 256 7 72 8.25e-23 93.6
Msa0835980 MtrunA17_Chr7g0270191 49.398 83 41 1 173 255 120 201 1.99e-21 91.3
Msa0835980 MtrunA17_Chr7g0263531 49.333 75 37 1 194 268 357 430 2.73e-21 92.4
Msa0835980 MtrunA17_Chr7g0263531 51.429 70 31 3 187 255 177 244 1.55e-14 72.8
Msa0835980 MtrunA17_Chr4g0004911 40.146 137 61 4 128 259 276 396 4.44e-21 92.4
Msa0835980 MtrunA17_Chr4g0004911 52.632 57 26 1 199 255 185 240 5.61e-14 71.2
Msa0835980 MtrunA17_Chr7g0218081 61.905 63 23 1 195 257 407 468 9.16e-21 91.3
Msa0835980 MtrunA17_Chr7g0218081 53.226 62 26 3 195 255 224 283 1.58e-13 70.1
Msa0835980 MtrunA17_Chr5g0418191 55.072 69 30 1 195 263 317 384 2.10e-20 90.1
Msa0835980 MtrunA17_Chr5g0418191 45.946 74 38 2 184 257 137 208 5.25e-13 68.6
Msa0835980 MtrunA17_Chr8g0387501 63.158 57 21 0 199 255 130 186 2.70e-20 87.8
Msa0835980 MtrunA17_Chr3g0106491 51.899 79 37 1 179 257 346 423 3.54e-20 89.7
Msa0835980 MtrunA17_Chr3g0106491 54.386 57 24 2 199 255 199 253 1.32e-13 70.5
Msa0835980 MtrunA17_Chr4g0051181 33.908 174 88 5 101 257 139 302 4.63e-20 89.4
Msa0835980 MtrunA17_Chr4g0042831 51.316 76 36 1 195 270 275 349 9.23e-20 87.8
Msa0835980 MtrunA17_Chr3g0079691 47.368 95 39 2 173 257 460 553 9.63e-20 88.6
Msa0835980 MtrunA17_Chr3g0079691 50.877 57 26 2 199 255 281 335 2.06e-11 63.9
Msa0835980 MtrunA17_Chr5g0432161 51.899 79 37 1 179 257 402 479 1.25e-19 88.2
Msa0835980 MtrunA17_Chr5g0432161 50.877 57 26 2 199 255 245 299 1.48e-12 67.4
Msa0835980 MtrunA17_Chr2g0288871 50.000 78 36 1 183 257 287 364 1.73e-19 87.8
Msa0835980 MtrunA17_Chr1g0150801 52.113 71 33 1 185 255 89 158 1.97e-19 82.8
Msa0835980 MtrunA17_Chr7g0249311 50.000 88 43 1 179 266 373 459 2.67e-19 87.4
Msa0835980 MtrunA17_Chr7g0249311 51.724 58 26 2 199 256 180 235 6.87e-12 65.5
Msa0835980 MtrunA17_Chr7g0270831 50.685 73 36 0 185 257 203 275 2.76e-19 86.7
Msa0835980 MtrunA17_Chr3g0136961 55.172 58 26 0 199 256 139 196 3.20e-19 85.1
Msa0835980 MtrunA17_Chr7g0249301 51.899 79 37 1 179 257 273 350 3.35e-19 86.3
Msa0835980 MtrunA17_Chr7g0249301 53.448 58 25 2 199 256 63 118 1.61e-12 66.6
Msa0835980 MtrunA17_Chr1g0194481 45.783 83 44 1 173 255 133 214 3.60e-19 85.5
Msa0835980 MtrunA17_Chr3g0099641 50.685 73 36 0 185 257 238 310 3.94e-19 86.7
Msa0835980 MtrunA17_Chr4g0001361 46.591 88 43 2 172 255 132 219 4.05e-19 85.1
Msa0835980 MtrunA17_Chr4g0060271 55.224 67 28 1 195 259 250 316 5.45e-19 86.3
Msa0835980 MtrunA17_Chr7g0243891 40.458 131 63 4 128 257 316 432 5.53e-19 86.3
Msa0835980 MtrunA17_Chr7g0243891 52.632 57 25 2 199 255 217 271 3.24e-12 66.2
Msa0835980 MtrunA17_Chr4g0074001 58.333 60 24 1 196 255 357 415 7.45e-19 85.9
Msa0835980 MtrunA17_Chr7g0216891 54.412 68 29 1 195 260 214 281 8.12e-19 85.9
Msa0835980 MtrunA17_Chr1g0150281 52.632 57 27 0 199 255 141 197 8.38e-19 84.0
Msa0835980 MtrunA17_Chr4g0051881 47.945 73 37 1 185 257 165 236 1.45e-18 84.0
Msa0835980 MtrunA17_Chr2g0333851 55.000 60 27 0 196 255 167 226 1.52e-18 83.6
Msa0835980 MtrunA17_Chr5g0443131 52.113 71 33 1 185 255 144 213 1.57e-18 83.6
Msa0835980 MtrunA17_Chr4g0075201 48.718 78 37 1 183 257 249 326 1.91e-18 84.7
Msa0835980 MtrunA17_Chr2g0322391 47.436 78 38 1 183 257 331 408 2.20e-18 84.7
Msa0835980 MtrunA17_Chr2g0302391 57.627 59 25 0 199 257 212 270 3.46e-18 83.6
Msa0835980 MtrunA17_Chr4g0025061 56.667 60 26 0 198 257 360 419 3.85e-18 84.0
Msa0835980 MtrunA17_Chr3g0126391 38.938 113 55 4 146 253 87 190 1.19e-17 81.3
Msa0835980 MtrunA17_Chr5g0418781 41.414 99 56 2 173 270 99 196 1.28e-17 80.5
Msa0835980 MtrunA17_Chr8g0383251 49.315 73 36 1 185 257 95 166 1.32e-17 78.6
Msa0835980 MtrunA17_Chr8g0335811 42.529 87 46 2 173 256 126 211 1.48e-17 79.3
Msa0835980 MtrunA17_Chr8g0383351 50.794 63 30 1 194 256 156 217 3.60e-17 78.6
Msa0835980 MtrunA17_Chr3g0129361 45.455 77 41 1 182 258 128 203 5.25e-17 77.8
Msa0835980 MtrunA17_Chr7g0238921 45.570 79 39 2 177 255 106 180 5.48e-17 79.3
Msa0835980 MtrunA17_Chr2g0294231 48.000 75 38 1 181 255 186 259 8.66e-17 79.3
Msa0835980 MtrunA17_Chr1g0188941 42.353 85 45 2 173 257 29 109 2.61e-16 73.2
Msa0835980 MtrunA17_Chr5g0447701 47.222 72 37 1 185 256 239 309 2.74e-16 77.8
Msa0835980 MtrunA17_Chr4g0025051 55.000 60 27 0 198 257 335 394 3.34e-16 78.2
Msa0835980 MtrunA17_Chr1g0150271 48.387 62 32 0 196 257 99 160 8.89e-16 75.1
Msa0835980 MtrunA17_Chr6g0485431 36.607 112 58 3 165 264 110 220 1.03e-15 75.9
Msa0835980 MtrunA17_Chr3g0129321 47.887 71 36 1 185 255 105 174 2.10e-15 73.2
Msa0835980 MtrunA17_Chr4g0068541 42.697 89 49 2 182 269 192 279 4.56e-15 74.3
Msa0835980 MtrunA17_Chr7g0275531 54.386 57 24 1 199 253 119 175 5.92e-15 73.6
Msa0835980 MtrunA17_Chr8g0347251 40.385 104 59 2 153 253 90 193 6.32e-15 73.6
Msa0835980 MtrunA17_Chr7g0224801 44.286 70 38 1 194 263 89 157 8.45e-15 70.5
Msa0835980 MtrunA17_Chr8g0387981 40.206 97 51 3 173 266 106 198 2.12e-14 72.4
Msa0835980 MtrunA17_Chr1g0189391 50.649 77 32 3 181 256 84 155 7.07e-14 70.5
Msa0835980 MtrunA17_Chr7g0248721 43.750 80 43 2 176 255 119 196 1.51e-13 68.2
Msa0835980 MtrunA17_Chr5g0402931 52.632 57 24 2 199 255 124 177 1.92e-12 64.3
Msa0835980 MtrunA17_Chr8g0386241 42.623 61 34 1 195 255 100 159 1.87e-11 61.6
Msa0835980 MtrunA17_Chr5g0428351 41.463 82 46 1 174 253 159 240 2.02e-11 63.2
Msa0835980 MtrunA17_Chr4g0024391 45.000 60 33 0 198 257 229 288 4.12e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835980 AT2G23320.1 46.828 331 101 12 1 270 1 317 2.63e-76 234
Msa0835980 AT4G24240.1 41.292 356 98 9 1 259 1 342 1.21e-72 226
Msa0835980 AT4G31550.1 42.025 326 111 11 1 263 1 311 4.18e-69 216
Msa0835980 AT4G31550.2 42.331 326 109 12 1 263 1 310 3.35e-68 214
Msa0835980 AT2G24570.1 59.690 129 48 1 137 261 178 306 1.84e-51 171
Msa0835980 AT3G04670.1 78.571 98 20 1 159 256 224 320 6.83e-51 170
Msa0835980 AT2G30590.1 71.296 108 28 2 150 255 264 370 1.31e-50 171
Msa0835980 AT5G28650.1 61.314 137 46 3 122 256 189 320 2.19e-50 169
Msa0835980 AT2G23320.2 41.606 274 90 11 1 218 1 260 5.62e-45 152
Msa0835980 AT4G24240.2 36.190 315 90 9 1 218 1 301 1.57e-43 150
Msa0835980 AT4G31550.3 37.722 281 96 12 1 218 1 265 2.13e-39 138
Msa0835980 AT1G29280.1 65.625 64 22 0 197 260 73 136 1.35e-28 110
Msa0835980 AT4G01250.1 56.667 90 34 1 166 255 101 185 5.85e-28 109
Msa0835980 AT3G58710.2 51.961 102 33 2 174 264 40 136 1.81e-27 107
Msa0835980 AT3G58710.1 46.341 123 51 3 156 264 16 137 7.75e-27 105
Msa0835980 AT2G34830.1 56.322 87 33 2 174 255 186 272 1.17e-26 107
Msa0835980 AT2G34830.2 56.322 87 33 2 174 255 195 281 1.27e-26 107
Msa0835980 AT1G30650.1 56.322 87 33 2 174 255 188 274 1.16e-25 105
Msa0835980 AT3G04670.2 75.000 64 15 1 159 222 224 286 1.71e-25 102
Msa0835980 AT5G26170.1 56.944 72 30 1 185 256 100 170 1.41e-23 94.4
Msa0835980 AT5G52830.1 53.012 83 35 1 173 255 144 222 5.98e-23 96.7
Msa0835980 AT2G04880.2 49.412 85 39 2 185 266 270 353 4.74e-22 95.1
Msa0835980 AT2G04880.1 49.412 85 39 2 185 266 294 377 4.83e-22 95.5
Msa0835980 AT4G26640.5 53.947 76 34 1 182 257 189 263 8.08e-22 94.0
Msa0835980 AT4G26640.6 53.947 76 34 1 182 257 189 263 8.08e-22 94.0
Msa0835980 AT4G26640.4 53.947 76 34 1 182 257 189 263 8.08e-22 94.0
Msa0835980 AT4G26640.3 53.947 76 34 1 182 257 189 263 8.08e-22 94.0
Msa0835980 AT4G26640.1 53.947 76 34 1 182 257 293 367 1.29e-21 94.4
Msa0835980 AT4G26640.7 47.368 95 39 2 173 257 306 399 1.31e-21 94.4
Msa0835980 AT4G26640.2 53.947 76 34 1 182 257 365 439 1.32e-21 94.4
Msa0835980 AT4G23550.1 53.247 77 32 1 181 257 127 199 1.53e-21 92.0
Msa0835980 AT1G13960.2 54.795 73 32 1 185 257 243 314 2.64e-21 92.4
Msa0835980 AT1G13960.2 54.839 62 25 3 195 255 72 131 1.30e-14 73.2
Msa0835980 AT2G38470.1 52.632 76 35 1 182 257 346 420 4.08e-21 92.8
Msa0835980 AT2G38470.1 52.632 57 25 2 199 255 185 239 4.54e-13 69.3
Msa0835980 AT5G07100.2 53.425 73 33 1 185 257 128 199 5.64e-21 88.6
Msa0835980 AT5G07100.2 49.123 57 28 1 199 255 25 80 1.25e-11 63.2
Msa0835980 AT5G07100.4 53.425 73 33 1 185 257 128 199 5.64e-21 88.6
Msa0835980 AT5G07100.4 49.123 57 28 1 199 255 25 80 1.25e-11 63.2
Msa0835980 AT5G07100.5 53.425 73 33 1 185 257 128 199 5.64e-21 88.6
Msa0835980 AT5G07100.5 49.123 57 28 1 199 255 25 80 1.25e-11 63.2
Msa0835980 AT5G07100.3 53.425 73 33 1 185 257 128 199 5.64e-21 88.6
Msa0835980 AT5G07100.3 49.123 57 28 1 199 255 25 80 1.25e-11 63.2
Msa0835980 AT1G13960.1 54.795 73 32 1 185 257 396 467 6.14e-21 92.4
Msa0835980 AT1G13960.1 54.839 62 25 3 195 255 225 284 1.35e-14 73.6
Msa0835980 AT5G07100.1 53.425 73 33 1 185 257 221 292 2.50e-20 89.0
Msa0835980 AT5G07100.1 49.123 57 28 1 199 255 118 173 1.95e-11 63.5
Msa0835980 AT4G18170.1 44.706 85 46 1 173 257 147 230 2.53e-20 89.0
Msa0835980 AT4G04450.2 44.444 99 51 2 163 257 159 257 2.80e-20 90.1
Msa0835980 AT1G62300.1 51.282 78 35 1 183 257 294 371 3.31e-20 90.1
Msa0835980 AT4G04450.1 44.444 99 51 2 163 257 253 351 4.81e-20 89.7
Msa0835980 AT4G22070.4 51.282 78 35 1 183 257 279 356 5.34e-20 89.7
Msa0835980 AT4G22070.3 51.282 78 35 1 183 257 279 356 5.34e-20 89.7
Msa0835980 AT4G22070.2 51.282 78 35 1 183 257 279 356 5.34e-20 89.7
Msa0835980 AT4G22070.1 51.282 78 35 1 183 257 279 356 5.34e-20 89.7
Msa0835980 AT5G49520.1 49.367 79 39 1 182 260 205 282 5.55e-20 89.0
Msa0835980 AT1G29860.1 50.000 76 37 1 182 257 120 194 5.67e-20 87.4
Msa0835980 AT2G03340.1 52.055 73 34 1 185 257 402 473 1.08e-19 88.6
Msa0835980 AT2G03340.1 51.389 72 32 3 194 264 245 314 6.20e-16 77.8
Msa0835980 AT5G64810.1 33.696 184 102 6 93 267 7 179 1.74e-19 84.3
Msa0835980 AT5G56270.1 46.875 96 39 2 173 257 451 545 1.87e-19 88.2
Msa0835980 AT5G15130.2 56.716 67 27 1 195 259 180 246 2.21e-19 87.8
Msa0835980 AT5G45050.2 49.398 83 38 1 173 255 1131 1209 2.35e-19 88.2
Msa0835980 AT5G45050.1 49.398 83 38 1 173 255 1159 1237 2.61e-19 88.2
Msa0835980 AT5G15130.1 56.716 67 27 1 195 259 222 288 2.66e-19 87.8
Msa0835980 AT5G45050.4 49.398 83 38 1 173 255 1020 1098 2.82e-19 87.8
Msa0835980 AT4G30935.1 54.098 61 27 1 199 259 332 391 3.41e-19 87.0
Msa0835980 AT1G68150.1 61.818 55 21 0 203 257 240 294 3.82e-19 86.3
Msa0835980 AT2G47260.1 46.988 83 43 1 173 255 149 230 4.91e-19 85.5
Msa0835980 AT4G31800.2 54.386 57 26 0 199 255 112 168 7.36e-19 83.6
Msa0835980 AT4G26440.1 39.850 133 65 3 123 255 311 428 1.01e-18 85.9
Msa0835980 AT4G31800.1 54.386 57 26 0 199 255 177 233 1.24e-18 84.3
Msa0835980 AT4G39410.1 50.000 84 40 2 174 256 198 280 2.06e-18 83.6
Msa0835980 AT4G01720.1 50.000 76 38 0 182 257 223 298 2.95e-18 84.3
Msa0835980 AT2G37260.2 42.202 109 54 2 157 257 218 325 4.44e-18 83.2
Msa0835980 AT2G37260.2 55.172 58 24 2 199 256 84 139 1.77e-12 67.0
Msa0835980 AT3G01080.1 56.250 64 27 1 194 257 302 364 4.44e-18 83.6
Msa0835980 AT3G01080.1 53.226 62 26 3 195 255 163 222 2.36e-13 69.7
Msa0835980 AT2G37260.3 42.202 109 54 2 157 257 220 327 4.65e-18 83.2
Msa0835980 AT2G37260.3 55.172 58 24 2 199 256 86 141 1.75e-12 67.0
Msa0835980 AT3G01080.2 56.250 64 27 1 194 257 340 402 4.90e-18 83.6
Msa0835980 AT3G01080.2 53.226 62 26 3 195 255 201 260 2.08e-13 70.1
Msa0835980 AT2G37260.1 40.351 114 59 2 152 257 295 407 5.21e-18 83.6
Msa0835980 AT2G37260.1 55.172 58 24 2 199 256 166 221 1.41e-12 67.4
Msa0835980 AT3G62340.1 44.706 85 46 1 176 260 96 179 5.27e-18 82.0
Msa0835980 AT1G80840.1 49.254 67 33 1 199 264 147 213 7.61e-18 82.0
Msa0835980 AT1G69310.4 46.341 82 43 1 174 255 123 203 8.12e-18 81.6
Msa0835980 AT1G69310.2 46.341 82 43 1 174 255 123 203 8.12e-18 81.6
Msa0835980 AT1G69310.1 46.341 82 43 1 174 255 123 203 8.12e-18 81.6
Msa0835980 AT1G64000.1 42.857 84 47 1 172 255 88 170 9.39e-18 79.7
Msa0835980 AT1G55600.1 48.052 77 36 2 182 255 288 363 1.31e-17 82.4
Msa0835980 AT2G25000.2 53.448 58 27 0 199 256 104 161 1.32e-17 79.7
Msa0835980 AT2G25000.4 53.448 58 27 0 199 256 104 161 1.32e-17 79.7
Msa0835980 AT2G25000.3 53.448 58 27 0 199 256 126 183 3.14e-17 79.3
Msa0835980 AT2G40740.1 43.299 97 51 3 161 253 134 230 3.38e-17 79.7
Msa0835980 AT5G46350.1 46.575 73 38 1 185 257 170 241 3.44e-17 80.5
Msa0835980 AT2G25000.1 53.448 58 27 0 199 256 147 204 4.01e-17 79.3
Msa0835980 AT2G40740.3 43.299 97 51 3 161 253 143 239 4.27e-17 79.7
Msa0835980 AT2G44745.1 42.857 84 44 2 175 255 119 201 5.01e-17 78.2
Msa0835980 AT5G41570.1 40.860 93 53 2 176 267 76 167 1.15e-16 76.3
Msa0835980 AT3G01970.1 44.595 74 40 1 185 258 52 124 2.14e-16 74.7
Msa0835980 AT2G30250.1 45.205 73 39 1 185 257 315 386 4.53e-16 77.8
Msa0835980 AT1G18860.1 58.182 55 23 0 203 257 244 298 4.76e-16 78.2
Msa0835980 AT2G21900.1 47.297 74 35 2 199 269 110 182 8.49e-16 74.3
Msa0835980 AT5G43290.1 56.140 57 24 1 199 255 115 170 8.12e-15 72.8
Msa0835980 AT5G13080.1 43.836 73 40 1 185 257 54 125 8.51e-15 70.5
Msa0835980 AT5G45260.1 45.570 79 35 2 179 255 1195 1267 8.68e-15 74.7
Msa0835980 AT2G46130.1 50.000 62 30 1 194 255 26 86 1.74e-14 68.6
Msa0835980 AT1G69810.1 53.448 58 26 1 203 259 208 265 1.87e-14 72.8
Msa0835980 AT1G69810.2 51.613 62 29 1 199 259 146 207 2.54e-14 72.0
Msa0835980 AT4G11070.2 38.462 117 66 3 140 253 53 166 3.52e-14 71.2
Msa0835980 AT4G11070.1 38.462 117 66 3 140 253 85 198 4.02e-14 71.6
Msa0835980 AT4G23810.1 37.209 129 72 4 145 265 100 227 7.26e-14 70.9
Msa0835980 AT3G01080.3 53.226 62 26 3 195 255 201 260 1.26e-13 70.1
Msa0835980 AT1G69310.3 43.902 82 41 2 174 255 123 199 1.79e-13 69.3
Msa0835980 AT2G46400.1 40.476 84 46 3 174 253 78 161 2.46e-12 66.2
Msa0835980 AT3G56400.1 29.936 157 100 5 106 253 22 177 6.59e-12 64.7
Msa0835980 AT1G66560.1 49.153 59 28 1 197 253 102 160 1.10e-11 63.9
Msa0835980 AT4G12020.6 50.877 57 26 2 199 255 469 523 1.64e-11 65.1
Msa0835980 AT4G12020.8 50.877 57 26 2 199 255 469 523 1.64e-11 65.1
Msa0835980 AT4G12020.1 50.877 57 26 2 199 255 469 523 1.75e-11 64.7
Msa0835980 AT4G12020.9 50.877 57 26 2 199 255 469 523 1.75e-11 64.7
Msa0835980 AT4G12020.10 50.877 57 26 2 199 255 469 523 1.76e-11 64.7
Msa0835980 AT4G12020.7 50.877 57 26 2 199 255 469 523 1.77e-11 64.7
Msa0835980 AT4G12020.3 50.877 57 26 2 199 255 469 523 1.78e-11 64.7
Msa0835980 AT4G12020.5 50.877 57 26 2 199 255 402 456 1.89e-11 64.7
Msa0835980 AT4G12020.4 50.877 57 26 2 199 255 469 523 2.00e-11 64.7
Msa0835980 AT5G24110.1 40.964 83 46 2 173 253 89 170 2.01e-11 63.5
Msa0835980 AT4G12020.2 50.877 57 26 2 199 255 469 523 2.06e-11 64.7
Msa0835980 AT4G12020.11 50.877 57 26 2 199 255 469 523 2.27e-11 64.3
Msa0835980 AT5G22570.1 46.479 71 32 2 196 260 108 178 3.06e-11 62.8
Msa0835980 AT1G80590.1 47.761 67 29 2 193 253 76 142 4.27e-11 62.0
Msa0835980 AT1G66550.2 47.458 59 29 1 197 253 102 160 5.31e-11 61.6
Msa0835980 AT1G66550.1 47.458 59 29 1 197 253 107 165 5.37e-11 62.0

Find 58 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAGGTTTCTTCTTCTTT+TGG 0.181004 5_4:+9359770 Msa0835980:CDS
TACAAGTGCAGCAGTGTTAA+AGG 0.228295 5_4:+9360899 Msa0835980:CDS
ATTTCACTTCTGAGTCAAAA+TGG 0.248832 5_4:+9359587 Msa0835980:CDS
GGATGAGGTGATCCTTTAAT+TGG 0.267426 5_4:-9360091 None:intergenic
CTCAAAGGAGATTGATTACT+AGG 0.300355 5_4:+9361145 Msa0835980:three_prime_UTR
TTCCAACTGATGAATATTCT+TGG 0.308006 5_4:+9360050 Msa0835980:CDS
GCAGTTGAAGAAGCTGCTTC+TGG 0.326064 5_4:+9359437 Msa0835980:CDS
TTATCAATAACTTCATTGTT+GGG 0.328912 5_4:-9359722 None:intergenic
ACTTCATTGTTGGGGATTAG+AGG 0.342249 5_4:-9359713 None:intergenic
CTTATCAATAACTTCATTGT+TGG 0.356327 5_4:-9359723 None:intergenic
AAAAGTGGAGATGGTGGATT+TGG 0.362015 5_4:+9361276 Msa0835980:three_prime_UTR
CTTCTTCAACTGCATTCTCT+TGG 0.364489 5_4:-9359427 None:intergenic
TACAAGTTGTTAACAGCTAA+TGG 0.367226 5_4:-9361107 None:intergenic
CCACAATCACTCCCTCTCTA+TGG 0.374540 5_4:+9360994 Msa0835980:CDS
ATCTTAGAATCCTCTTGAAC+TGG 0.376921 5_4:+9361034 Msa0835980:exon
GAATATTCTTGGAGGAAGTA+TGG 0.385581 5_4:+9360061 Msa0835980:CDS
AAGTGTAGCTCTGAGAATTA+TGG 0.386635 5_4:+9359827 Msa0835980:CDS
AAAACATGTAGAAAGAGCTT+TGG 0.435280 5_4:+9360934 Msa0835980:CDS
TAAGTAACTACCAACATAGA+TGG 0.441381 5_4:-9360962 None:intergenic
AGTCAAAATGGAACAAGAAC+TGG 0.459813 5_4:+9359599 Msa0835980:CDS
CTCCAAGAATATTCATCAGT+TGG 0.460948 5_4:-9360052 None:intergenic
TCTCGATGGATTCACATTGT+TGG 0.470287 5_4:-9361229 None:intergenic
ATGTTGGTAGTTACTTATGA+AGG 0.478399 5_4:+9360968 Msa0835980:CDS
TATGGCCGTTGAACTAATGA+TGG 0.484741 5_4:+9359373 None:intergenic
ATAAATAATACTAGTCTCGA+TGG 0.504369 5_4:-9361243 None:intergenic
GAATACAAACCCTAATTCCA+TGG 0.508067 5_4:+9359517 Msa0835980:CDS
AAGAATAGAAAGAATTGAGT+GGG 0.512466 5_4:+9361303 Msa0835980:three_prime_UTR
GAGGTTGAAAAGAGTGATGA+GGG 0.520013 5_4:+9359997 Msa0835980:CDS
TATCAATAACTTCATTGTTG+GGG 0.523155 5_4:-9359721 None:intergenic
CTAGTTTCAGAAGTGGAAGT+AGG 0.526285 5_4:-9359656 None:intergenic
TCAGAAGTGGAAGTAGGAGA+AGG 0.528280 5_4:-9359650 None:intergenic
TCAATTCAATCCAGTTCAAG+AGG 0.532612 5_4:-9361044 None:intergenic
CCATAGAGAGGGAGTGATTG+TGG 0.532930 5_4:-9360994 None:intergenic
CAACTGATGAATATTCTTGG+AGG 0.535323 5_4:+9360053 Msa0835980:CDS
GTGTCCCATCATTAGTTCAA+CGG 0.535706 5_4:-9359378 None:intergenic
AGCTGCAATAAGTTTGAAGA+TGG 0.547952 5_4:+9360021 Msa0835980:CDS
TGTGAAACGATAAAAGCTAA+AGG 0.548180 5_4:-9361202 None:intergenic
ACTGTCATTGTTCAAAGAAG+AGG 0.551193 5_4:+9359879 Msa0835980:CDS
TTTGGATGATCCATCTATGT+TGG 0.552858 5_4:+9360952 Msa0835980:CDS
TGAAACAGCAACATCAGCTA+CGG 0.565102 5_4:-9359549 None:intergenic
ATAATCAAGTACCTTGGATG+AGG 0.580943 5_4:-9360106 None:intergenic
GTGGAAGTAGGAGAAGGTAA+AGG 0.586033 5_4:-9359644 None:intergenic
TCAAAGGAGATTGATTACTA+GGG 0.595352 5_4:+9361146 Msa0835980:three_prime_UTR
GTAGACTCTAGTTTCAGAAG+TGG 0.596356 5_4:-9359663 None:intergenic
TCATTGTTGGGGATTAGAGG+AGG 0.598888 5_4:-9359710 None:intergenic
ATTAGCTTCAACCATAGAGA+GGG 0.604376 5_4:-9361005 None:intergenic
TTAAAGGATCACCTCATCCA+AGG 0.605873 5_4:+9360095 Msa0835980:CDS
AGAGGAGGAATCTGCTGCAA+CGG 0.605875 5_4:-9359695 None:intergenic
TATTAGCTTCAACCATAGAG+AGG 0.607872 5_4:-9361006 None:intergenic
AAGGAGATTGATTACTAGGG+TGG 0.615197 5_4:+9361149 Msa0835980:three_prime_UTR
AAAGAATAGAAAGAATTGAG+TGG 0.616462 5_4:+9361302 Msa0835980:three_prime_UTR
TGAGGTTGAAAAGAGTGATG+AGG 0.616693 5_4:+9359996 Msa0835980:CDS
ATGGCCGTTGAACTAATGAT+GGG 0.636491 5_4:+9359374 Msa0835980:CDS
TCTGCTGCAACGGAGTAGCA+TGG 0.640412 5_4:-9359685 None:intergenic
AGAATAGAAAGAATTGAGTG+GGG 0.643884 5_4:+9361304 Msa0835980:three_prime_UTR
AAAAGAAGAAGAAACCTGAG+AGG 0.683869 5_4:-9359768 None:intergenic
AATTATGGTAATGAAAAGTG+TGG 0.696342 5_4:+9359842 Msa0835980:CDS
TCTTCTTTGAACAATGACAG+TGG 0.712784 5_4:-9359877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTCATTCAATATA+TGG - chr5_4:9360334-9360353 None:intergenic 10.0%
!!! GTAACTTATTTTTATTATTT+TGG + chr5_4:9360592-9360611 Msa0835980:intron 10.0%
!!! TTTATTTTTCATTCAATATA+TGG - chr5_4:9360334-9360353 None:intergenic 10.0%
!!! GTAACTTATTTTTATTATTT+TGG + chr5_4:9360592-9360611 Msa0835980:intron 10.0%
!! TTAATTAATGTAGAAAAATG+AGG + chr5_4:9359978-9359997 Msa0835980:intron 15.0%
!!! AATTTTCATATACTTGTTTA+TGG - chr5_4:9360429-9360448 None:intergenic 15.0%
!!! AATAAGTTACTTAAGTTTTA+AGG - chr5_4:9360582-9360601 None:intergenic 15.0%
!!! TTTATTTTCAAAGAAAAAAG+TGG + chr5_4:9361261-9361280 Msa0835980:three_prime_UTR 15.0%
!! TTAATTAATGTAGAAAAATG+AGG + chr5_4:9359978-9359997 Msa0835980:intron 15.0%
!!! AATTTTCATATACTTGTTTA+TGG - chr5_4:9360429-9360448 None:intergenic 15.0%
!!! AATAAGTTACTTAAGTTTTA+AGG - chr5_4:9360582-9360601 None:intergenic 15.0%
!!! TTTATTTTCAAAGAAAAAAG+TGG + chr5_4:9361261-9361280 Msa0835980:three_prime_UTR 15.0%
!! TTATCAATAACTTCATTGTT+GGG - chr5_4:9359725-9359744 None:intergenic 20.0%
!!! TAGCATATCTAAGAAATTTT+TGG - chr5_4:9360205-9360224 None:intergenic 20.0%
!!! TTTTTCATTCAATATATGGA+TGG - chr5_4:9360330-9360349 None:intergenic 20.0%
!!! TTTTTTTAATTATTGGTCCA+CGG + chr5_4:9360727-9360746 Msa0835980:intron 20.0%
!! TTATCAATAACTTCATTGTT+GGG - chr5_4:9359725-9359744 None:intergenic 20.0%
!!! TAGCATATCTAAGAAATTTT+TGG - chr5_4:9360205-9360224 None:intergenic 20.0%
!!! TTTTTCATTCAATATATGGA+TGG - chr5_4:9360330-9360349 None:intergenic 20.0%
!!! TTTTTTTAATTATTGGTCCA+CGG + chr5_4:9360727-9360746 Msa0835980:intron 20.0%
!! TTTTATAGTCCATGGAATTA+GGG - chr5_4:9359529-9359548 None:intergenic 25.0%
! TATCAATAACTTCATTGTTG+GGG - chr5_4:9359724-9359743 None:intergenic 25.0%
! CTTATCAATAACTTCATTGT+TGG - chr5_4:9359726-9359745 None:intergenic 25.0%
!! AATTATGGTAATGAAAAGTG+TGG + chr5_4:9359842-9359861 Msa0835980:CDS 25.0%
! TATGGTCAAAAACCAATTAA+AGG + chr5_4:9360079-9360098 Msa0835980:CDS 25.0%
! ATAATCTACCACTTACTTTA+AGG + chr5_4:9360178-9360197 Msa0835980:intron 25.0%
!!! AGTCCATTTTTAGAATTGAA+GGG - chr5_4:9360246-9360265 None:intergenic 25.0%
! AGAAAAGAAAGATTGTCATT+AGG + chr5_4:9360296-9360315 Msa0835980:intron 25.0%
! AGGTAAATTACTAATCAAGA+TGG - chr5_4:9360403-9360422 None:intergenic 25.0%
! CATATACTTGTTTATGGTAA+AGG - chr5_4:9360423-9360442 None:intergenic 25.0%
! ATCTTAAAAGTAGAAGTTTG+TGG - chr5_4:9360668-9360687 None:intergenic 25.0%
! ATTTAGTACTCAATCTTAGT+AGG - chr5_4:9360760-9360779 None:intergenic 25.0%
!! ATAAATAATACTAGTCTCGA+TGG - chr5_4:9361246-9361265 None:intergenic 25.0%
! AAAGAATAGAAAGAATTGAG+TGG + chr5_4:9361302-9361321 Msa0835980:three_prime_UTR 25.0%
! AAGAATAGAAAGAATTGAGT+GGG + chr5_4:9361303-9361322 Msa0835980:three_prime_UTR 25.0%
!! TTTTATAGTCCATGGAATTA+GGG - chr5_4:9359529-9359548 None:intergenic 25.0%
! TATCAATAACTTCATTGTTG+GGG - chr5_4:9359724-9359743 None:intergenic 25.0%
! CTTATCAATAACTTCATTGT+TGG - chr5_4:9359726-9359745 None:intergenic 25.0%
!! AATTATGGTAATGAAAAGTG+TGG + chr5_4:9359842-9359861 Msa0835980:CDS 25.0%
! TATGGTCAAAAACCAATTAA+AGG + chr5_4:9360079-9360098 Msa0835980:CDS 25.0%
! ATAATCTACCACTTACTTTA+AGG + chr5_4:9360178-9360197 Msa0835980:intron 25.0%
!!! AGTCCATTTTTAGAATTGAA+GGG - chr5_4:9360246-9360265 None:intergenic 25.0%
! AGAAAAGAAAGATTGTCATT+AGG + chr5_4:9360296-9360315 Msa0835980:intron 25.0%
! AGGTAAATTACTAATCAAGA+TGG - chr5_4:9360403-9360422 None:intergenic 25.0%
! CATATACTTGTTTATGGTAA+AGG - chr5_4:9360423-9360442 None:intergenic 25.0%
! ATCTTAAAAGTAGAAGTTTG+TGG - chr5_4:9360668-9360687 None:intergenic 25.0%
! ATTTAGTACTCAATCTTAGT+AGG - chr5_4:9360760-9360779 None:intergenic 25.0%
!! ATAAATAATACTAGTCTCGA+TGG - chr5_4:9361246-9361265 None:intergenic 25.0%
! AAAGAATAGAAAGAATTGAG+TGG + chr5_4:9361302-9361321 Msa0835980:three_prime_UTR 25.0%
! GTTTTATAGTCCATGGAATT+AGG - chr5_4:9359530-9359549 None:intergenic 30.0%
ATTTCACTTCTGAGTCAAAA+TGG + chr5_4:9359587-9359606 Msa0835980:CDS 30.0%
! TGATTTTTCTTATTCCTCTC+AGG + chr5_4:9359754-9359773 Msa0835980:CDS 30.0%
TTCCAACTGATGAATATTCT+TGG + chr5_4:9360050-9360069 Msa0835980:CDS 30.0%
GTACTAATAATCAAGTACCT+TGG - chr5_4:9360115-9360134 None:intergenic 30.0%
!! TTTTTGGTCCTTAAAGTAAG+TGG - chr5_4:9360189-9360208 None:intergenic 30.0%
! TGACCCTTCAATTCTAAAAA+TGG + chr5_4:9360240-9360259 Msa0835980:intron 30.0%
!!! GAGTCCATTTTTAGAATTGA+AGG - chr5_4:9360247-9360266 None:intergenic 30.0%
GACTCATGTATATATGAGTA+AGG + chr5_4:9360262-9360281 Msa0835980:intron 30.0%
! AATCTTTCTTTTCTAACGAG+AGG - chr5_4:9360290-9360309 None:intergenic 30.0%
! TCCTTTTCTTTATGCTCATA+GGG + chr5_4:9360376-9360395 Msa0835980:intron 30.0%
!! TGTGGTCTTTCTCATTTTTA+CGG - chr5_4:9360650-9360669 None:intergenic 30.0%
ACAATGATTATTACTACTGC+AGG + chr5_4:9360870-9360889 Msa0835980:intron 30.0%
CAATGATTATTACTACTGCA+GGG + chr5_4:9360871-9360890 Msa0835980:intron 30.0%
AATGATTATTACTACTGCAG+GGG + chr5_4:9360872-9360891 Msa0835980:intron 30.0%
AAAACATGTAGAAAGAGCTT+TGG + chr5_4:9360934-9360953 Msa0835980:CDS 30.0%
TAAGTAACTACCAACATAGA+TGG - chr5_4:9360965-9360984 None:intergenic 30.0%
!! ATGTTGGTAGTTACTTATGA+AGG + chr5_4:9360968-9360987 Msa0835980:CDS 30.0%
TACAAGTTGTTAACAGCTAA+TGG - chr5_4:9361110-9361129 None:intergenic 30.0%
! CAATTGCATCTTTTACTCAA+AGG + chr5_4:9361130-9361149 Msa0835980:three_prime_UTR 30.0%
TCAAAGGAGATTGATTACTA+GGG + chr5_4:9361146-9361165 Msa0835980:three_prime_UTR 30.0%
TGTGAAACGATAAAAGCTAA+AGG - chr5_4:9361205-9361224 None:intergenic 30.0%
TTCAAAGAAAAAAGTGGAGA+TGG + chr5_4:9361267-9361286 Msa0835980:three_prime_UTR 30.0%
! GTTTTATAGTCCATGGAATT+AGG - chr5_4:9359530-9359549 None:intergenic 30.0%
ATTTCACTTCTGAGTCAAAA+TGG + chr5_4:9359587-9359606 Msa0835980:CDS 30.0%
! TGATTTTTCTTATTCCTCTC+AGG + chr5_4:9359754-9359773 Msa0835980:CDS 30.0%
TTCCAACTGATGAATATTCT+TGG + chr5_4:9360050-9360069 Msa0835980:CDS 30.0%
GTACTAATAATCAAGTACCT+TGG - chr5_4:9360115-9360134 None:intergenic 30.0%
!! TTTTTGGTCCTTAAAGTAAG+TGG - chr5_4:9360189-9360208 None:intergenic 30.0%
! TGACCCTTCAATTCTAAAAA+TGG + chr5_4:9360240-9360259 Msa0835980:intron 30.0%
!!! GAGTCCATTTTTAGAATTGA+AGG - chr5_4:9360247-9360266 None:intergenic 30.0%
GACTCATGTATATATGAGTA+AGG + chr5_4:9360262-9360281 Msa0835980:intron 30.0%
! AATCTTTCTTTTCTAACGAG+AGG - chr5_4:9360290-9360309 None:intergenic 30.0%
! TCCTTTTCTTTATGCTCATA+GGG + chr5_4:9360376-9360395 Msa0835980:intron 30.0%
!! TGTGGTCTTTCTCATTTTTA+CGG - chr5_4:9360650-9360669 None:intergenic 30.0%
ACAATGATTATTACTACTGC+AGG + chr5_4:9360870-9360889 Msa0835980:intron 30.0%
CAATGATTATTACTACTGCA+GGG + chr5_4:9360871-9360890 Msa0835980:intron 30.0%
AATGATTATTACTACTGCAG+GGG + chr5_4:9360872-9360891 Msa0835980:intron 30.0%
AAAACATGTAGAAAGAGCTT+TGG + chr5_4:9360934-9360953 Msa0835980:CDS 30.0%
TAAGTAACTACCAACATAGA+TGG - chr5_4:9360965-9360984 None:intergenic 30.0%
!! ATGTTGGTAGTTACTTATGA+AGG + chr5_4:9360968-9360987 Msa0835980:CDS 30.0%
TACAAGTTGTTAACAGCTAA+TGG - chr5_4:9361110-9361129 None:intergenic 30.0%
! CAATTGCATCTTTTACTCAA+AGG + chr5_4:9361130-9361149 Msa0835980:three_prime_UTR 30.0%
TCAAAGGAGATTGATTACTA+GGG + chr5_4:9361146-9361165 Msa0835980:three_prime_UTR 30.0%
TGTGAAACGATAAAAGCTAA+AGG - chr5_4:9361205-9361224 None:intergenic 30.0%
TTCAAAGAAAAAAGTGGAGA+TGG + chr5_4:9361267-9361286 Msa0835980:three_prime_UTR 30.0%
GAATACAAACCCTAATTCCA+TGG + chr5_4:9359517-9359536 Msa0835980:CDS 35.0%
AGTCAAAATGGAACAAGAAC+TGG + chr5_4:9359599-9359618 Msa0835980:CDS 35.0%
AAAAGAAGAAGAAACCTGAG+AGG - chr5_4:9359771-9359790 None:intergenic 35.0%
! TCTCAGGTTTCTTCTTCTTT+TGG + chr5_4:9359770-9359789 Msa0835980:CDS 35.0%
!! AAGTGTAGCTCTGAGAATTA+TGG + chr5_4:9359827-9359846 Msa0835980:CDS 35.0%
TCTTCTTTGAACAATGACAG+TGG - chr5_4:9359880-9359899 None:intergenic 35.0%
ACTGTCATTGTTCAAAGAAG+AGG + chr5_4:9359879-9359898 Msa0835980:CDS 35.0%
AGCTGCAATAAGTTTGAAGA+TGG + chr5_4:9360021-9360040 Msa0835980:CDS 35.0%
CTCCAAGAATATTCATCAGT+TGG - chr5_4:9360055-9360074 None:intergenic 35.0%
CAACTGATGAATATTCTTGG+AGG + chr5_4:9360053-9360072 Msa0835980:CDS 35.0%
GAATATTCTTGGAGGAAGTA+TGG + chr5_4:9360061-9360080 Msa0835980:CDS 35.0%
ATAATCAAGTACCTTGGATG+AGG - chr5_4:9360109-9360128 None:intergenic 35.0%
! CTCCTTTTCTTTATGCTCAT+AGG + chr5_4:9360375-9360394 Msa0835980:intron 35.0%
TCCCTATGAGCATAAAGAAA+AGG - chr5_4:9360380-9360399 None:intergenic 35.0%
CTCGAAGAAAATGTCTATCA+TGG - chr5_4:9360466-9360485 None:intergenic 35.0%
TAAGATACGCGAACATTGTT+AGG + chr5_4:9360682-9360701 Msa0835980:intron 35.0%
!! TTTTAATTATTGGTCCACGG+TGG + chr5_4:9360730-9360749 Msa0835980:intron 35.0%
TAGTACTCAATCTTAGTAGG+TGG - chr5_4:9360757-9360776 None:intergenic 35.0%
TTTGGATGATCCATCTATGT+TGG + chr5_4:9360952-9360971 Msa0835980:CDS 35.0%
! ATTAGCTTCAACCATAGAGA+GGG - chr5_4:9361008-9361027 None:intergenic 35.0%
! TATTAGCTTCAACCATAGAG+AGG - chr5_4:9361009-9361028 None:intergenic 35.0%
ATCTTAGAATCCTCTTGAAC+TGG + chr5_4:9361034-9361053 Msa0835980:exon 35.0%
TCAATTCAATCCAGTTCAAG+AGG - chr5_4:9361047-9361066 None:intergenic 35.0%
CTCAAAGGAGATTGATTACT+AGG + chr5_4:9361145-9361164 Msa0835980:three_prime_UTR 35.0%
CCAATAGTGTGCAAGAAAAA+AGG - chr5_4:9361179-9361198 None:intergenic 35.0%
!!! CCTTTTTTCTTGCACACTAT+TGG + chr5_4:9361176-9361195 Msa0835980:three_prime_UTR 35.0%
AAAGAAAAAAGTGGAGATGG+TGG + chr5_4:9361270-9361289 Msa0835980:three_prime_UTR 35.0%
GAATACAAACCCTAATTCCA+TGG + chr5_4:9359517-9359536 Msa0835980:CDS 35.0%
AGTCAAAATGGAACAAGAAC+TGG + chr5_4:9359599-9359618 Msa0835980:CDS 35.0%
AAAAGAAGAAGAAACCTGAG+AGG - chr5_4:9359771-9359790 None:intergenic 35.0%
! TCTCAGGTTTCTTCTTCTTT+TGG + chr5_4:9359770-9359789 Msa0835980:CDS 35.0%
!! AAGTGTAGCTCTGAGAATTA+TGG + chr5_4:9359827-9359846 Msa0835980:CDS 35.0%
TCTTCTTTGAACAATGACAG+TGG - chr5_4:9359880-9359899 None:intergenic 35.0%
ACTGTCATTGTTCAAAGAAG+AGG + chr5_4:9359879-9359898 Msa0835980:CDS 35.0%
AGCTGCAATAAGTTTGAAGA+TGG + chr5_4:9360021-9360040 Msa0835980:CDS 35.0%
CTCCAAGAATATTCATCAGT+TGG - chr5_4:9360055-9360074 None:intergenic 35.0%
CAACTGATGAATATTCTTGG+AGG + chr5_4:9360053-9360072 Msa0835980:CDS 35.0%
GAATATTCTTGGAGGAAGTA+TGG + chr5_4:9360061-9360080 Msa0835980:CDS 35.0%
ATAATCAAGTACCTTGGATG+AGG - chr5_4:9360109-9360128 None:intergenic 35.0%
! CTCCTTTTCTTTATGCTCAT+AGG + chr5_4:9360375-9360394 Msa0835980:intron 35.0%
TCCCTATGAGCATAAAGAAA+AGG - chr5_4:9360380-9360399 None:intergenic 35.0%
CTCGAAGAAAATGTCTATCA+TGG - chr5_4:9360466-9360485 None:intergenic 35.0%
TAAGATACGCGAACATTGTT+AGG + chr5_4:9360682-9360701 Msa0835980:intron 35.0%
!! TTTTAATTATTGGTCCACGG+TGG + chr5_4:9360730-9360749 Msa0835980:intron 35.0%
TAGTACTCAATCTTAGTAGG+TGG - chr5_4:9360757-9360776 None:intergenic 35.0%
TTTGGATGATCCATCTATGT+TGG + chr5_4:9360952-9360971 Msa0835980:CDS 35.0%
! ATTAGCTTCAACCATAGAGA+GGG - chr5_4:9361008-9361027 None:intergenic 35.0%
! TATTAGCTTCAACCATAGAG+AGG - chr5_4:9361009-9361028 None:intergenic 35.0%
ATCTTAGAATCCTCTTGAAC+TGG + chr5_4:9361034-9361053 Msa0835980:exon 35.0%
TCAATTCAATCCAGTTCAAG+AGG - chr5_4:9361047-9361066 None:intergenic 35.0%
CTCAAAGGAGATTGATTACT+AGG + chr5_4:9361145-9361164 Msa0835980:three_prime_UTR 35.0%
CCAATAGTGTGCAAGAAAAA+AGG - chr5_4:9361179-9361198 None:intergenic 35.0%
!!! CCTTTTTTCTTGCACACTAT+TGG + chr5_4:9361176-9361195 Msa0835980:three_prime_UTR 35.0%
AAAGAAAAAAGTGGAGATGG+TGG + chr5_4:9361270-9361289 Msa0835980:three_prime_UTR 35.0%
ATGGCCGTTGAACTAATGAT+GGG + chr5_4:9359374-9359393 Msa0835980:CDS 40.0%
GTGTCCCATCATTAGTTCAA+CGG - chr5_4:9359381-9359400 None:intergenic 40.0%
CTTCTTCAACTGCATTCTCT+TGG - chr5_4:9359430-9359449 None:intergenic 40.0%
!! AGCTACGGTTTTATAGTCCA+TGG - chr5_4:9359537-9359556 None:intergenic 40.0%
TGAAACAGCAACATCAGCTA+CGG - chr5_4:9359552-9359571 None:intergenic 40.0%
CTAGTTTCAGAAGTGGAAGT+AGG - chr5_4:9359659-9359678 None:intergenic 40.0%
! GTAGACTCTAGTTTCAGAAG+TGG - chr5_4:9359666-9359685 None:intergenic 40.0%
ACTTCATTGTTGGGGATTAG+AGG - chr5_4:9359716-9359735 None:intergenic 40.0%
TGAGGTTGAAAAGAGTGATG+AGG + chr5_4:9359996-9360015 Msa0835980:CDS 40.0%
GAGGTTGAAAAGAGTGATGA+GGG + chr5_4:9359997-9360016 Msa0835980:CDS 40.0%
GGATGAGGTGATCCTTTAAT+TGG - chr5_4:9360094-9360113 None:intergenic 40.0%
TTAAAGGATCACCTCATCCA+AGG + chr5_4:9360095-9360114 Msa0835980:CDS 40.0%
TTGTGTCTGTCGTTAGTACA+AGG - chr5_4:9360509-9360528 None:intergenic 40.0%
TACAAGTGCAGCAGTGTTAA+AGG + chr5_4:9360899-9360918 Msa0835980:CDS 40.0%
! CTTTCTACATGTTTTCGTGC+TGG - chr5_4:9360929-9360948 None:intergenic 40.0%
AAGGAGATTGATTACTAGGG+TGG + chr5_4:9361149-9361168 Msa0835980:three_prime_UTR 40.0%
! TCTCGATGGATTCACATTGT+TGG - chr5_4:9361232-9361251 None:intergenic 40.0%
!! AAAAGTGGAGATGGTGGATT+TGG + chr5_4:9361276-9361295 Msa0835980:three_prime_UTR 40.0%
ATGGCCGTTGAACTAATGAT+GGG + chr5_4:9359374-9359393 Msa0835980:CDS 40.0%
GTGTCCCATCATTAGTTCAA+CGG - chr5_4:9359381-9359400 None:intergenic 40.0%
CTTCTTCAACTGCATTCTCT+TGG - chr5_4:9359430-9359449 None:intergenic 40.0%
!! AGCTACGGTTTTATAGTCCA+TGG - chr5_4:9359537-9359556 None:intergenic 40.0%
TGAAACAGCAACATCAGCTA+CGG - chr5_4:9359552-9359571 None:intergenic 40.0%
CTAGTTTCAGAAGTGGAAGT+AGG - chr5_4:9359659-9359678 None:intergenic 40.0%
! GTAGACTCTAGTTTCAGAAG+TGG - chr5_4:9359666-9359685 None:intergenic 40.0%
ACTTCATTGTTGGGGATTAG+AGG - chr5_4:9359716-9359735 None:intergenic 40.0%
TGAGGTTGAAAAGAGTGATG+AGG + chr5_4:9359996-9360015 Msa0835980:CDS 40.0%
GAGGTTGAAAAGAGTGATGA+GGG + chr5_4:9359997-9360016 Msa0835980:CDS 40.0%
GGATGAGGTGATCCTTTAAT+TGG - chr5_4:9360094-9360113 None:intergenic 40.0%
TTAAAGGATCACCTCATCCA+AGG + chr5_4:9360095-9360114 Msa0835980:CDS 40.0%
TTGTGTCTGTCGTTAGTACA+AGG - chr5_4:9360509-9360528 None:intergenic 40.0%
TACAAGTGCAGCAGTGTTAA+AGG + chr5_4:9360899-9360918 Msa0835980:CDS 40.0%
! CTTTCTACATGTTTTCGTGC+TGG - chr5_4:9360929-9360948 None:intergenic 40.0%
AAGGAGATTGATTACTAGGG+TGG + chr5_4:9361149-9361168 Msa0835980:three_prime_UTR 40.0%
! TCTCGATGGATTCACATTGT+TGG - chr5_4:9361232-9361251 None:intergenic 40.0%
!! AAAAGTGGAGATGGTGGATT+TGG + chr5_4:9361276-9361295 Msa0835980:three_prime_UTR 40.0%
GTGGAAGTAGGAGAAGGTAA+AGG - chr5_4:9359647-9359666 None:intergenic 45.0%
TCAGAAGTGGAAGTAGGAGA+AGG - chr5_4:9359653-9359672 None:intergenic 45.0%
TCATTGTTGGGGATTAGAGG+AGG - chr5_4:9359713-9359732 None:intergenic 45.0%
TGGTTGAACCGACACCAATT+AGG + chr5_4:9360612-9360631 Msa0835980:intron 45.0%
GACAGTGACCTAATTGGTGT+CGG - chr5_4:9360623-9360642 None:intergenic 45.0%
GTGGAAGTAGGAGAAGGTAA+AGG - chr5_4:9359647-9359666 None:intergenic 45.0%
TCAGAAGTGGAAGTAGGAGA+AGG - chr5_4:9359653-9359672 None:intergenic 45.0%
TCATTGTTGGGGATTAGAGG+AGG - chr5_4:9359713-9359732 None:intergenic 45.0%
TGGTTGAACCGACACCAATT+AGG + chr5_4:9360612-9360631 Msa0835980:intron 45.0%
GACAGTGACCTAATTGGTGT+CGG - chr5_4:9360623-9360642 None:intergenic 45.0%
!!! TCAATTAAAATTTTAATATA+AGG - chr5_4:9360149-9360168 None:intergenic 5.0%
!!! TGATTTTTTTTTTTAATTAT+TGG + chr5_4:9360720-9360739 Msa0835980:intron 5.0%
!!! TCAATTAAAATTTTAATATA+AGG - chr5_4:9360149-9360168 None:intergenic 5.0%
!!! TGATTTTTTTTTTTAATTAT+TGG + chr5_4:9360720-9360739 Msa0835980:intron 5.0%
GCAGTTGAAGAAGCTGCTTC+TGG + chr5_4:9359437-9359456 Msa0835980:CDS 50.0%
AGAGGAGGAATCTGCTGCAA+CGG - chr5_4:9359698-9359717 None:intergenic 50.0%
GGTCGAGACAGTGACCTAAT+TGG - chr5_4:9360629-9360648 None:intergenic 50.0%
CCATAGAGAGGGAGTGATTG+TGG - chr5_4:9360997-9361016 None:intergenic 50.0%
CCACAATCACTCCCTCTCTA+TGG + chr5_4:9360994-9361013 Msa0835980:CDS 50.0%
GCAGTTGAAGAAGCTGCTTC+TGG + chr5_4:9359437-9359456 Msa0835980:CDS 50.0%
AGAGGAGGAATCTGCTGCAA+CGG - chr5_4:9359698-9359717 None:intergenic 50.0%
GGTCGAGACAGTGACCTAAT+TGG - chr5_4:9360629-9360648 None:intergenic 50.0%
CCATAGAGAGGGAGTGATTG+TGG - chr5_4:9360997-9361016 None:intergenic 50.0%
CCACAATCACTCCCTCTCTA+TGG + chr5_4:9360994-9361013 Msa0835980:CDS 50.0%
TCTGCTGCAACGGAGTAGCA+TGG - chr5_4:9359688-9359707 None:intergenic 55.0%
TCTTAGTAGGTGGTCCACCG+TGG - chr5_4:9360747-9360766 None:intergenic 55.0%
TCTGCTGCAACGGAGTAGCA+TGG - chr5_4:9359688-9359707 None:intergenic 55.0%
TCTTAGTAGGTGGTCCACCG+TGG - chr5_4:9360747-9360766 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 9359374 9361325 9359374 ID=Msa0835980;Name=Msa0835980
chr5_4 mRNA 9359374 9361325 9359374 ID=Msa0835980-mRNA-1;Parent=Msa0835980;Name=Msa0835980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.66|1|1|1|3|274|270
chr5_4 exon 9359374 9359900 9359374 ID=Msa0835980-mRNA-1:exon:4077;Parent=Msa0835980-mRNA-1
chr5_4 exon 9359991 9360116 9359991 ID=Msa0835980-mRNA-1:exon:4078;Parent=Msa0835980-mRNA-1
chr5_4 exon 9360892 9361325 9360892 ID=Msa0835980-mRNA-1:exon:4079;Parent=Msa0835980-mRNA-1
chr5_4 CDS 9359374 9359900 9359374 ID=Msa0835980-mRNA-1:cds;Parent=Msa0835980-mRNA-1
chr5_4 CDS 9359991 9360116 9359991 ID=Msa0835980-mRNA-1:cds;Parent=Msa0835980-mRNA-1
chr5_4 CDS 9360892 9361051 9360892 ID=Msa0835980-mRNA-1:cds;Parent=Msa0835980-mRNA-1
chr5_4 three_prime_UTR 9361052 9361325 9361052 ID=Msa0835980-mRNA-1:three_prime_utr;Parent=Msa0835980-mRNA-1
Gene Sequence

>Msa0835980

ATGGCCGTTGAACTAATGATGGGACACAAAAACAACAATTTAACAAACAAATTCCAAGAGAATGCAGTTGAAGAAGCTGCTTCTGGTTTACAAAGCATAGAAAAACTCATTAAATTACTATCATCATCACAAACATGTTCTTCGAATACAAACCCTAATTCCATGGACTATAAAACCGTAGCTGATGTTGCTGTTTCAAAGTTTAAGAATGTTATTTCACTTCTGAGTCAAAATGGAACAAGAACTGGTCATGCACGTTTCAGAAGAGCACCTTTACCTTCTCCTACTTCCACTTCTGAAACTAGAGTCTACCATGCTACTCCGTTGCAGCAGATTCCTCCTCTAATCCCCAACAATGAAGTTATTGATAAGAATATCATTGATTTTTCTTATTCCTCTCAGGTTTCTTCTTCTTTTGGAAAGTCTTGTGTTTCTTCGTGTTCGTTGAAGAGAAAGTGTAGCTCTGAGAATTATGGTAATGAAAAGTGTGGTAGTTCATCTAGCCACTGTCATTGTTCAAAGAAGAGAAAAATGAGGTTGAAAAGAGTGATGAGGGTAGCTGCAATAAGTTTGAAGATGGCTGATATTCCAACTGATGAATATTCTTGGAGGAAGTATGGTCAAAAACCAATTAAAGGATCACCTCATCCAAGGGGTTATTACAAGTGCAGCAGTGTTAAAGGCTGTCCAGCACGAAAACATGTAGAAAGAGCTTTGGATGATCCATCTATGTTGGTAGTTACTTATGAAGGCAACCACAATCACTCCCTCTCTATGGTTGAAGCTAATAATCTCATCTTAGAATCCTCTTGA
Protein sequence

>Msa0835980

MAVELMMGHKNNNLTNKFQENAVEEAASGLQSIEKLIKLLSSSQTCSSNTNPNSMDYKTVADVAVSKFKNVISLLSQNGTRTGHARFRRAPLPSPTSTSETRVYHATPLQQIPPLIPNNEVIDKNIIDFSYSSQVSSSFGKSCVSSCSLKRKCSSENYGNEKCGSSSSHCHCSKKRKMRLKRVMRVAAISLKMADIPTDEYSWRKYGQKPIKGSPHPRGYYKCSSVKGCPARKHVERALDDPSMLVVTYEGNHNHSLSMVEANNLILESS*