Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836490 | GAU45400.1 | 67.427 | 307 | 78 | 3 | 48 | 353 | 12 | 297 | 5.68e-146 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836490 | sp|Q9SZL8|FRS5_ARATH | 32.588 | 313 | 198 | 7 | 46 | 351 | 20 | 326 | 3.29e-33 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836490 | A0A2Z6P7V3 | 67.427 | 307 | 78 | 3 | 48 | 353 | 12 | 297 | 2.72e-146 | 430 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0836490 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836490 | MtrunA17_Chr2g0287651 | 47.101 | 276 | 133 | 3 | 94 | 365 | 68 | 334 | 6.39e-81 | 267 |
| Msa0836490 | MtrunA17_Chr1g0203051 | 31.579 | 304 | 187 | 5 | 64 | 352 | 34 | 331 | 6.09e-45 | 166 |
| Msa0836490 | MtrunA17_Chr1g0202341 | 33.803 | 284 | 168 | 7 | 100 | 376 | 50 | 320 | 4.59e-38 | 146 |
| Msa0836490 | MtrunA17_Chr1g0198761 | 34.884 | 258 | 155 | 6 | 107 | 352 | 53 | 309 | 1.95e-34 | 136 |
| Msa0836490 | MtrunA17_Chr5g0448761 | 35.019 | 257 | 154 | 6 | 105 | 351 | 64 | 317 | 9.63e-34 | 134 |
| Msa0836490 | MtrunA17_Chr5g0441581 | 31.373 | 255 | 152 | 5 | 105 | 353 | 36 | 273 | 3.24e-33 | 132 |
| Msa0836490 | MtrunA17_Chr8g0363841 | 30.451 | 266 | 168 | 5 | 97 | 351 | 9 | 268 | 4.74e-32 | 129 |
| Msa0836490 | MtrunA17_Chr5g0431001 | 33.333 | 261 | 155 | 6 | 107 | 352 | 67 | 323 | 5.77e-31 | 124 |
| Msa0836490 | MtrunA17_Chr7g0258861 | 29.078 | 282 | 171 | 7 | 105 | 373 | 14 | 279 | 5.43e-29 | 115 |
| Msa0836490 | MtrunA17_Chr2g0324011 | 28.745 | 247 | 172 | 2 | 105 | 349 | 14 | 258 | 1.42e-28 | 118 |
| Msa0836490 | MtrunA17_Chr2g0290391 | 31.061 | 264 | 164 | 5 | 105 | 352 | 55 | 316 | 5.77e-28 | 117 |
| Msa0836490 | MtrunA17_Chr2g0296781 | 30.522 | 249 | 167 | 5 | 105 | 352 | 1 | 244 | 7.95e-27 | 114 |
| Msa0836490 | MtrunA17_Chr2g0276841 | 30.502 | 259 | 170 | 7 | 107 | 358 | 76 | 331 | 1.69e-25 | 109 |
| Msa0836490 | MtrunA17_Chr1g0196541 | 31.890 | 254 | 157 | 7 | 105 | 352 | 1 | 244 | 1.43e-24 | 107 |
| Msa0836490 | MtrunA17_Chr2g0291591 | 32.946 | 258 | 155 | 7 | 102 | 352 | 65 | 311 | 4.15e-24 | 105 |
| Msa0836490 | MtrunA17_Chr3g0082121 | 28.740 | 254 | 166 | 7 | 104 | 353 | 46 | 288 | 1.06e-22 | 101 |
| Msa0836490 | MtrunA17_Chr6g0458391 | 27.907 | 301 | 167 | 10 | 105 | 389 | 229 | 495 | 2.02e-22 | 100 |
| Msa0836490 | MtrunA17_Chr2g0294841 | 30.315 | 254 | 166 | 6 | 107 | 350 | 51 | 303 | 3.22e-22 | 99.8 |
| Msa0836490 | MtrunA17_Chr6g0477261 | 41.071 | 112 | 66 | 0 | 241 | 352 | 22 | 133 | 2.28e-21 | 97.1 |
| Msa0836490 | MtrunA17_Chr2g0287061 | 31.325 | 249 | 130 | 8 | 106 | 351 | 188 | 398 | 2.87e-21 | 97.1 |
| Msa0836490 | MtrunA17_Chr1g0203721 | 27.888 | 251 | 174 | 6 | 107 | 352 | 69 | 317 | 3.30e-21 | 97.1 |
| Msa0836490 | MtrunA17_Chr2g0291581 | 29.020 | 255 | 155 | 7 | 105 | 353 | 75 | 309 | 6.73e-21 | 95.5 |
| Msa0836490 | MtrunA17_Chr1g0207551 | 29.435 | 248 | 171 | 4 | 105 | 351 | 38 | 282 | 7.40e-21 | 95.9 |
| Msa0836490 | MtrunA17_Chr5g0440451 | 27.547 | 265 | 161 | 8 | 105 | 351 | 47 | 298 | 4.24e-18 | 87.4 |
| Msa0836490 | MtrunA17_Chr3g0080351 | 26.374 | 273 | 153 | 7 | 96 | 349 | 71 | 314 | 1.09e-17 | 85.9 |
| Msa0836490 | MtrunA17_Chr2g0329031 | 24.535 | 269 | 176 | 5 | 94 | 353 | 7 | 257 | 1.03e-16 | 82.8 |
| Msa0836490 | MtrunA17_Chr1g0164591 | 28.313 | 166 | 110 | 2 | 188 | 353 | 12 | 168 | 2.19e-15 | 77.0 |
| Msa0836490 | MtrunA17_Chr8g0340801 | 33.945 | 109 | 70 | 1 | 209 | 317 | 1 | 107 | 9.92e-15 | 70.1 |
| Msa0836490 | MtrunA17_Chr5g0448511 | 40.000 | 85 | 51 | 0 | 267 | 351 | 5 | 89 | 2.92e-12 | 68.6 |
| Msa0836490 | MtrunA17_Chr3g0118611 | 31.538 | 130 | 81 | 3 | 226 | 351 | 70 | 195 | 3.45e-12 | 68.6 |
| Msa0836490 | MtrunA17_Chr6g0451441 | 24.345 | 267 | 154 | 8 | 9 | 265 | 18 | 246 | 5.81e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836490 | AT4G38180.1 | 32.588 | 313 | 198 | 7 | 46 | 351 | 20 | 326 | 3.35e-34 | 136 |
| Msa0836490 | AT5G28530.1 | 33.333 | 261 | 158 | 5 | 107 | 352 | 61 | 320 | 5.50e-32 | 129 |
| Msa0836490 | AT5G28530.3 | 33.333 | 261 | 158 | 5 | 107 | 352 | 61 | 320 | 6.49e-32 | 129 |
| Msa0836490 | AT5G28530.2 | 33.333 | 261 | 158 | 5 | 107 | 352 | 61 | 320 | 6.49e-32 | 129 |
| Msa0836490 | AT1G10240.2 | 32.319 | 263 | 160 | 8 | 107 | 358 | 54 | 309 | 2.24e-27 | 115 |
| Msa0836490 | AT1G10240.1 | 32.319 | 263 | 160 | 8 | 107 | 358 | 54 | 309 | 2.24e-27 | 115 |
| Msa0836490 | AT4G15090.1 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.62e-25 | 109 |
| Msa0836490 | AT4G15090.5 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.62e-25 | 109 |
| Msa0836490 | AT4G15090.3 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.62e-25 | 109 |
| Msa0836490 | AT4G15090.2 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.62e-25 | 109 |
| Msa0836490 | AT4G15090.4 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.62e-25 | 109 |
| Msa0836490 | AT4G19990.7 | 29.054 | 296 | 149 | 10 | 79 | 351 | 6 | 263 | 4.59e-20 | 93.6 |
| Msa0836490 | AT3G06250.2 | 29.675 | 246 | 133 | 5 | 105 | 349 | 194 | 400 | 4.66e-20 | 93.6 |
| Msa0836490 | AT3G06250.1 | 29.675 | 246 | 133 | 5 | 105 | 349 | 194 | 400 | 4.66e-20 | 93.6 |
| Msa0836490 | AT3G06250.3 | 29.675 | 246 | 133 | 5 | 105 | 349 | 194 | 400 | 4.66e-20 | 93.6 |
| Msa0836490 | AT4G19990.3 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 9.74e-20 | 92.8 |
| Msa0836490 | AT4G19990.4 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 9.74e-20 | 92.8 |
| Msa0836490 | AT4G19990.6 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 1.07e-19 | 92.4 |
| Msa0836490 | AT4G19990.2 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 1.07e-19 | 92.4 |
| Msa0836490 | AT4G19990.5 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 1.10e-19 | 92.4 |
| Msa0836490 | AT5G28530.5 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 2.83e-18 | 87.8 |
| Msa0836490 | AT5G28530.4 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 3.03e-18 | 87.8 |
| Msa0836490 | AT1G76320.1 | 28.405 | 257 | 152 | 7 | 105 | 349 | 1 | 237 | 3.46e-18 | 87.8 |
| Msa0836490 | AT1G76320.4 | 28.405 | 257 | 152 | 7 | 105 | 349 | 1 | 237 | 3.46e-18 | 87.8 |
| Msa0836490 | AT1G76320.3 | 28.405 | 257 | 152 | 7 | 105 | 349 | 1 | 237 | 4.16e-18 | 87.4 |
| Msa0836490 | AT1G52520.1 | 29.457 | 258 | 153 | 8 | 105 | 353 | 89 | 326 | 4.20e-18 | 87.4 |
| Msa0836490 | AT1G76320.2 | 28.405 | 257 | 152 | 7 | 105 | 349 | 1 | 237 | 4.24e-18 | 87.4 |
| Msa0836490 | AT4G19990.1 | 45.783 | 83 | 45 | 0 | 269 | 351 | 110 | 192 | 1.10e-17 | 86.3 |
| Msa0836490 | AT3G22170.2 | 24.151 | 265 | 162 | 5 | 100 | 349 | 69 | 309 | 2.55e-17 | 85.1 |
| Msa0836490 | AT3G22170.1 | 24.151 | 265 | 162 | 5 | 100 | 349 | 69 | 309 | 2.55e-17 | 85.1 |
| Msa0836490 | AT2G27110.2 | 24.901 | 253 | 154 | 5 | 105 | 352 | 53 | 274 | 7.15e-17 | 84.0 |
| Msa0836490 | AT2G27110.1 | 24.901 | 253 | 154 | 5 | 105 | 352 | 53 | 274 | 7.15e-17 | 84.0 |
| Msa0836490 | AT1G80010.1 | 28.669 | 293 | 167 | 13 | 80 | 352 | 79 | 349 | 9.45e-17 | 83.2 |
| Msa0836490 | AT5G18960.2 | 27.935 | 247 | 139 | 7 | 105 | 349 | 215 | 424 | 1.98e-16 | 82.4 |
| Msa0836490 | AT5G18960.1 | 27.935 | 247 | 139 | 7 | 105 | 349 | 215 | 424 | 1.98e-16 | 82.4 |
| Msa0836490 | AT2G27110.3 | 40.506 | 79 | 47 | 0 | 274 | 352 | 51 | 129 | 5.21e-13 | 71.6 |
| Msa0836490 | AT2G32250.5 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 4.50e-11 | 65.5 |
| Msa0836490 | AT2G32250.2 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 4.98e-11 | 65.5 |
| Msa0836490 | AT2G32250.4 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 4.98e-11 | 65.5 |
| Msa0836490 | AT2G32250.6 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 5.59e-11 | 65.5 |
| Msa0836490 | AT2G32250.1 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 5.59e-11 | 65.5 |
| Msa0836490 | AT2G32250.3 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 5.59e-11 | 65.5 |
| Msa0836490 | AT2G32250.8 | 26.275 | 255 | 126 | 7 | 105 | 349 | 1 | 203 | 5.80e-11 | 65.1 |
| Msa0836490 | AT2G32250.7 | 26.275 | 255 | 126 | 7 | 105 | 349 | 1 | 203 | 5.96e-11 | 65.1 |
| Msa0836490 | AT4G38170.1 | 55.319 | 47 | 20 | 1 | 306 | 351 | 45 | 91 | 6.86e-11 | 64.7 |
Find 94 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTGCCATAGGGGTAAA+AGG | 0.177813 | 5_4:+9982622 | Msa0836490:CDS |
| TGCTACTTTGAGTTACTTCC+AGG | 0.237219 | 5_4:+9982392 | Msa0836490:CDS |
| TCACTCAATTTGCGGTAATT+AGG | 0.258248 | 5_4:-9982195 | None:intergenic |
| ATCATCAGCAATAGGGCTTT+TGG | 0.276381 | 5_4:-9983503 | None:intergenic |
| TCCATACTTGTTCTTTCTAT+AGG | 0.305560 | 5_4:-9982553 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 5_4:+9982311 | Msa0836490:CDS |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 5_4:-9982305 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 5_4:+9981858 | Msa0836490:CDS |
| ACCTATAGAAAGAACAAGTA+TGG | 0.349144 | 5_4:+9982552 | Msa0836490:CDS |
| GAAGATTCATCATCAGCAAT+AGG | 0.352394 | 5_4:-9983511 | None:intergenic |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 5_4:+9982106 | Msa0836490:CDS |
| TATTGCTGATGGCGGCTCGC+TGG | 0.361638 | 5_4:+9983554 | Msa0836490:CDS |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 5_4:+9981851 | Msa0836490:CDS |
| GAGTTTACATTTACAGATGA+TGG | 0.367609 | 5_4:+9982447 | Msa0836490:CDS |
| AGGTTTGACTATGAGTGTTT+TGG | 0.377109 | 5_4:+9982507 | Msa0836490:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.384991 | 5_4:+9982257 | Msa0836490:CDS |
| TTGCTGTAGAGTAACTTGTT+TGG | 0.396662 | 5_4:-9983310 | None:intergenic |
| AGGGGTAAAAGGGTTATATA+TGG | 0.406078 | 5_4:+9982633 | Msa0836490:CDS |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 5_4:+9982338 | Msa0836490:CDS |
| TTTGGGCAGATTCTACTAGT+AGG | 0.409763 | 5_4:+9982487 | Msa0836490:CDS |
| TGCGGTAATTAGGCATCAAA+TGG | 0.435720 | 5_4:-9982185 | None:intergenic |
| AATAGCGTGCTATAGGAGTA+TGG | 0.437326 | 5_4:-9983617 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 5_4:-9982067 | None:intergenic |
| TATCAACTTCACTCAATTTG+CGG | 0.446828 | 5_4:-9982203 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 5_4:+9982297 | Msa0836490:CDS |
| GCAAGGGTTAAAATAAAAGA+TGG | 0.464290 | 5_4:+9982360 | Msa0836490:CDS |
| AAGATTCATCATCAGCAATA+GGG | 0.464525 | 5_4:-9983510 | None:intergenic |
| ATACTTGTTCTTTCTATAGG+TGG | 0.464692 | 5_4:-9982550 | None:intergenic |
| GTAAGAACATGTCATATCTT+GGG | 0.467321 | 5_4:+9982258 | Msa0836490:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 5_4:+9981993 | Msa0836490:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 5_4:-9982158 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 5_4:-9982053 | None:intergenic |
| CCCTTGCCATAGGGGTAAAA+GGG | 0.473194 | 5_4:+9982623 | Msa0836490:CDS |
| AGGACTGAGTCCAAGATGAT+AGG | 0.475000 | 5_4:+9983469 | Msa0836490:CDS |
| TTTGAGTTACTTCCAGGGTA+AGG | 0.478060 | 5_4:+9982398 | Msa0836490:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 5_4:+9981811 | Msa0836490:CDS |
| GGCAAGGGGTTGTTTCTCCA+TGG | 0.482176 | 5_4:-9982608 | None:intergenic |
| ATGTGAAACGTGATTCTAAT+GGG | 0.492055 | 5_4:+9981959 | Msa0836490:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 5_4:+9982329 | Msa0836490:CDS |
| GTATCACTATATACATCAAA+AGG | 0.509968 | 5_4:-9981592 | None:intergenic |
| CAAGGGTTAAAATAAAAGAT+GGG | 0.510385 | 5_4:+9982361 | Msa0836490:CDS |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 5_4:+9982291 | Msa0836490:CDS |
| CCACGAGTTTGAAGTAAGAA+AGG | 0.512169 | 5_4:+9981933 | Msa0836490:CDS |
| GATGTGAAACGTGATTCTAA+TGG | 0.514927 | 5_4:+9981958 | Msa0836490:CDS |
| GTTTGCTAAGCTCAGCAAGA+AGG | 0.520099 | 5_4:+9983449 | Msa0836490:intron |
| GCCTCGGACTATCAGAGTGC+AGG | 0.524275 | 5_4:+9983274 | Msa0836490:CDS |
| GAGAAACAACCCCTTGCCAT+AGG | 0.525206 | 5_4:+9982613 | Msa0836490:CDS |
| TTGCAAGCCGCCTATCATCT+TGG | 0.527236 | 5_4:-9983479 | None:intergenic |
| AGAAACAACCCCTTGCCATA+GGG | 0.527759 | 5_4:+9982614 | Msa0836490:CDS |
| AATAAGGAGGGTATTAATGA+TGG | 0.529187 | 5_4:+9982009 | Msa0836490:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 5_4:-9982148 | None:intergenic |
| AGCAACGATGTTTGTACTGA+CGG | 0.549220 | 5_4:+9981739 | Msa0836490:CDS |
| TGGTAGCGACTAGCAGTGGT+TGG | 0.553705 | 5_4:-9983597 | None:intergenic |
| AAGGGGTTGTTTCTCCATGG+TGG | 0.566504 | 5_4:-9982605 | None:intergenic |
| CGAGCCGCCATCAGCAATAG+CGG | 0.571864 | 5_4:-9983550 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 5_4:+9981775 | Msa0836490:CDS |
| TCAATTAGTATGCAATAAGG+AGG | 0.578737 | 5_4:+9981996 | Msa0836490:CDS |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 5_4:+9981852 | Msa0836490:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 5_4:-9982147 | None:intergenic |
| TATCAGTATCAGCCTTACCC+TGG | 0.582368 | 5_4:-9982410 | None:intergenic |
| ATATATGCAGAACACCTCAA+TGG | 0.583601 | 5_4:-9982673 | None:intergenic |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 5_4:+9982298 | Msa0836490:CDS |
| GGTAGCGACTAGCAGTGGTT+GGG | 0.589687 | 5_4:-9983596 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 5_4:+9982343 | Msa0836490:CDS |
| CCTTTCTTACTTCAAACTCG+TGG | 0.598343 | 5_4:-9981933 | None:intergenic |
| ATATAGTGATACAGATGAGG+TGG | 0.607738 | 5_4:+9981603 | Msa0836490:CDS |
| GCTACTTTGAGTTACTTCCA+GGG | 0.608783 | 5_4:+9982393 | Msa0836490:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 5_4:+9981649 | Msa0836490:CDS |
| TATGCAGAACACCTCAATGG+TGG | 0.616308 | 5_4:-9982670 | None:intergenic |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 5_4:+9982219 | Msa0836490:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 5_4:+9981654 | Msa0836490:CDS |
| AAGGGTTAAAATAAAAGATG+GGG | 0.619179 | 5_4:+9982362 | Msa0836490:CDS |
| GAAACAACCCCTTGCCATAG+GGG | 0.626017 | 5_4:+9982615 | Msa0836490:CDS |
| ATGCAGAACACCTCAATGGT+GGG | 0.628893 | 5_4:-9982669 | None:intergenic |
| TGTGCAACCGCTATTGCTGA+TGG | 0.635045 | 5_4:+9983543 | Msa0836490:CDS |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 5_4:+9982344 | Msa0836490:CDS |
| TTTAGTGGATATAACCACCA+TGG | 0.638528 | 5_4:+9982591 | Msa0836490:CDS |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 5_4:-9981786 | None:intergenic |
| GCCTGCACTCTGATAGTCCG+AGG | 0.642470 | 5_4:-9983275 | None:intergenic |
| TGACGGAGATGCAGACGGTG+TGG | 0.643271 | 5_4:+9981756 | Msa0836490:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 5_4:+9981793 | Msa0836490:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 5_4:+9982234 | Msa0836490:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 5_4:-9982171 | None:intergenic |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 5_4:+9981794 | Msa0836490:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 5_4:+9981650 | Msa0836490:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.667584 | 5_4:+9981997 | Msa0836490:CDS |
| AGTATGGTAGCGACTAGCAG+TGG | 0.667677 | 5_4:-9983601 | None:intergenic |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 5_4:+9981769 | Msa0836490:CDS |
| ACTGAGTCCAAGATGATAGG+CGG | 0.689094 | 5_4:+9983472 | Msa0836490:CDS |
| TGTATATAGTGATACAGATG+AGG | 0.703043 | 5_4:+9981600 | Msa0836490:CDS |
| GCAACCGCTATTGCTGATGG+CGG | 0.710760 | 5_4:+9983546 | Msa0836490:CDS |
| TGTACTGACGGAGATGCAGA+CGG | 0.719254 | 5_4:+9981751 | Msa0836490:CDS |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 5_4:+9981651 | Msa0836490:CDS |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 5_4:+9981873 | Msa0836490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATGTTTTTTTTTTGAAT+CGG | - | chr5_4:9982773-9982792 | None:intergenic | 10.0% |
| !!! | CAATTTTATTTATGTTTTTA+GGG | - | chr5_4:9982982-9983001 | None:intergenic | 10.0% |
| !!! | TCAATTTTATTTATGTTTTT+AGG | - | chr5_4:9982983-9983002 | None:intergenic | 10.0% |
| !!! | TATATGTTTTTTTTTTGAAT+CGG | - | chr5_4:9982773-9982792 | None:intergenic | 10.0% |
| !!! | CAATTTTATTTATGTTTTTA+GGG | - | chr5_4:9982982-9983001 | None:intergenic | 10.0% |
| !!! | TCAATTTTATTTATGTTTTT+AGG | - | chr5_4:9982983-9983002 | None:intergenic | 10.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr5_4:9982329-9982348 | Msa0836490:CDS | 20.0% |
| !!! | CATAAATTTTATACAAGATC+AGG | + | chr5_4:9982834-9982853 | Msa0836490:intron | 20.0% |
| !!! | ATTTTATTAAAACGAGTTCA+AGG | + | chr5_4:9983099-9983118 | Msa0836490:intron | 20.0% |
| !!! | TTTTATTAAAACGAGTTCAA+GGG | + | chr5_4:9983100-9983119 | Msa0836490:intron | 20.0% |
| !! | GAGTTTAAATCATATTAAAG+TGG | - | chr5_4:9983424-9983443 | None:intergenic | 20.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr5_4:9982329-9982348 | Msa0836490:CDS | 20.0% |
| !!! | CATAAATTTTATACAAGATC+AGG | + | chr5_4:9982834-9982853 | Msa0836490:intron | 20.0% |
| !!! | ATTTTATTAAAACGAGTTCA+AGG | + | chr5_4:9983099-9983118 | Msa0836490:intron | 20.0% |
| !!! | TTTTATTAAAACGAGTTCAA+GGG | + | chr5_4:9983100-9983119 | Msa0836490:intron | 20.0% |
| !! | GAGTTTAAATCATATTAAAG+TGG | - | chr5_4:9983424-9983443 | None:intergenic | 20.0% |
| ! | GTATCACTATATACATCAAA+AGG | - | chr5_4:9981595-9981614 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr5_4:9982027-9982046 | Msa0836490:CDS | 25.0% |
| ! | CAAGGGTTAAAATAAAAGAT+GGG | + | chr5_4:9982361-9982380 | Msa0836490:CDS | 25.0% |
| ! | AAGGGTTAAAATAAAAGATG+GGG | + | chr5_4:9982362-9982381 | Msa0836490:CDS | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | chr5_4:9982583-9982602 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | chr5_4:9982584-9982603 | None:intergenic | 25.0% |
| !! | CTTTTGTATTTATCTCTTTG+TGG | + | chr5_4:9982702-9982721 | Msa0836490:intron | 25.0% |
| ! | GACATATGAGTATACTTAAA+TGG | + | chr5_4:9982856-9982875 | Msa0836490:intron | 25.0% |
| ! | TTTATTAAAACGAGTTCAAG+GGG | + | chr5_4:9983101-9983120 | Msa0836490:intron | 25.0% |
| ! | TCATGTAATTTCATCGTAAT+AGG | - | chr5_4:9983136-9983155 | None:intergenic | 25.0% |
| !! | ATATAGCATGATTTTACAGA+AGG | + | chr5_4:9983197-9983216 | Msa0836490:intron | 25.0% |
| ! | GTATCACTATATACATCAAA+AGG | - | chr5_4:9981595-9981614 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr5_4:9982027-9982046 | Msa0836490:CDS | 25.0% |
| ! | CAAGGGTTAAAATAAAAGAT+GGG | + | chr5_4:9982361-9982380 | Msa0836490:CDS | 25.0% |
| ! | AAGGGTTAAAATAAAAGATG+GGG | + | chr5_4:9982362-9982381 | Msa0836490:CDS | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | chr5_4:9982583-9982602 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | chr5_4:9982584-9982603 | None:intergenic | 25.0% |
| !! | CTTTTGTATTTATCTCTTTG+TGG | + | chr5_4:9982702-9982721 | Msa0836490:intron | 25.0% |
| ! | GACATATGAGTATACTTAAA+TGG | + | chr5_4:9982856-9982875 | Msa0836490:intron | 25.0% |
| ! | TTTATTAAAACGAGTTCAAG+GGG | + | chr5_4:9983101-9983120 | Msa0836490:intron | 25.0% |
| ! | TCATGTAATTTCATCGTAAT+AGG | - | chr5_4:9983136-9983155 | None:intergenic | 25.0% |
| !! | ATATAGCATGATTTTACAGA+AGG | + | chr5_4:9983197-9983216 | Msa0836490:intron | 25.0% |
| TGTATATAGTGATACAGATG+AGG | + | chr5_4:9981600-9981619 | Msa0836490:CDS | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr5_4:9981851-9981870 | Msa0836490:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr5_4:9981852-9981871 | Msa0836490:CDS | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr5_4:9981858-9981877 | Msa0836490:CDS | 30.0% | |
| ATGTGAAACGTGATTCTAAT+GGG | + | chr5_4:9981959-9981978 | Msa0836490:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr5_4:9981996-9982015 | Msa0836490:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr5_4:9981997-9982016 | Msa0836490:CDS | 30.0% | |
| !! | AATAAGGAGGGTATTAATGA+TGG | + | chr5_4:9982009-9982028 | Msa0836490:CDS | 30.0% |
| TATCAACTTCACTCAATTTG+CGG | - | chr5_4:9982206-9982225 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr5_4:9982257-9982276 | Msa0836490:CDS | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr5_4:9982258-9982277 | Msa0836490:CDS | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr5_4:9982338-9982357 | Msa0836490:CDS | 30.0% | |
| GCAAGGGTTAAAATAAAAGA+TGG | + | chr5_4:9982360-9982379 | Msa0836490:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr5_4:9982447-9982466 | Msa0836490:CDS | 30.0% | |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr5_4:9982470-9982489 | Msa0836490:CDS | 30.0% |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr5_4:9982553-9982572 | None:intergenic | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr5_4:9982552-9982571 | Msa0836490:CDS | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr5_4:9982556-9982575 | None:intergenic | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr5_4:9982582-9982601 | None:intergenic | 30.0% | |
| !!! | GGGTTATATATGGAGTTTTT+TGG | + | chr5_4:9982643-9982662 | Msa0836490:CDS | 30.0% |
| CAAAATTTATTAAGCCAAGG+AGG | - | chr5_4:9982750-9982769 | None:intergenic | 30.0% | |
| ACTTAATTGAAGCTACTCTT+TGG | - | chr5_4:9983057-9983076 | None:intergenic | 30.0% | |
| AAGATTCATCATCAGCAATA+GGG | - | chr5_4:9983513-9983532 | None:intergenic | 30.0% | |
| TGTATATAGTGATACAGATG+AGG | + | chr5_4:9981600-9981619 | Msa0836490:CDS | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr5_4:9981851-9981870 | Msa0836490:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr5_4:9981852-9981871 | Msa0836490:CDS | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr5_4:9981858-9981877 | Msa0836490:CDS | 30.0% | |
| ATGTGAAACGTGATTCTAAT+GGG | + | chr5_4:9981959-9981978 | Msa0836490:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr5_4:9981996-9982015 | Msa0836490:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr5_4:9981997-9982016 | Msa0836490:CDS | 30.0% | |
| !! | AATAAGGAGGGTATTAATGA+TGG | + | chr5_4:9982009-9982028 | Msa0836490:CDS | 30.0% |
| TATCAACTTCACTCAATTTG+CGG | - | chr5_4:9982206-9982225 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr5_4:9982257-9982276 | Msa0836490:CDS | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr5_4:9982258-9982277 | Msa0836490:CDS | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr5_4:9982338-9982357 | Msa0836490:CDS | 30.0% | |
| GCAAGGGTTAAAATAAAAGA+TGG | + | chr5_4:9982360-9982379 | Msa0836490:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr5_4:9982447-9982466 | Msa0836490:CDS | 30.0% | |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr5_4:9982470-9982489 | Msa0836490:CDS | 30.0% |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr5_4:9982553-9982572 | None:intergenic | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr5_4:9982552-9982571 | Msa0836490:CDS | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr5_4:9982556-9982575 | None:intergenic | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr5_4:9982582-9982601 | None:intergenic | 30.0% | |
| !!! | GGGTTATATATGGAGTTTTT+TGG | + | chr5_4:9982643-9982662 | Msa0836490:CDS | 30.0% |
| CAAAATTTATTAAGCCAAGG+AGG | - | chr5_4:9982750-9982769 | None:intergenic | 30.0% | |
| ACTTAATTGAAGCTACTCTT+TGG | - | chr5_4:9983057-9983076 | None:intergenic | 30.0% | |
| AAGATTCATCATCAGCAATA+GGG | - | chr5_4:9983513-9983532 | None:intergenic | 30.0% | |
| ATATAGTGATACAGATGAGG+TGG | + | chr5_4:9981603-9981622 | Msa0836490:CDS | 35.0% | |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr5_4:9981650-9981669 | Msa0836490:CDS | 35.0% |
| GTGGAATTTAACCATGGTAA+TGG | + | chr5_4:9981775-9981794 | Msa0836490:CDS | 35.0% | |
| GATGTGAAACGTGATTCTAA+TGG | + | chr5_4:9981958-9981977 | Msa0836490:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr5_4:9981993-9982012 | Msa0836490:CDS | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr5_4:9982174-9982193 | None:intergenic | 35.0% | |
| TCACTCAATTTGCGGTAATT+AGG | - | chr5_4:9982198-9982217 | None:intergenic | 35.0% | |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr5_4:9982219-9982238 | Msa0836490:CDS | 35.0% |
| ! | TCATATCTTGGGCTTTTTGA+TGG | + | chr5_4:9982269-9982288 | Msa0836490:CDS | 35.0% |
| ! | CATATCTTGGGCTTTTTGAT+GGG | + | chr5_4:9982270-9982289 | Msa0836490:CDS | 35.0% |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr5_4:9982311-9982330 | Msa0836490:CDS | 35.0% | |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr5_4:9982469-9982488 | Msa0836490:CDS | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr5_4:9982476-9982495 | None:intergenic | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr5_4:9982507-9982526 | Msa0836490:CDS | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr5_4:9982576-9982595 | Msa0836490:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | chr5_4:9982591-9982610 | Msa0836490:CDS | 35.0% |
| ! | ATATAACCCTTTTACCCCTA+TGG | - | chr5_4:9982632-9982651 | None:intergenic | 35.0% |
| AGGGGTAAAAGGGTTATATA+TGG | + | chr5_4:9982633-9982652 | Msa0836490:CDS | 35.0% | |
| ATATATGCAGAACACCTCAA+TGG | - | chr5_4:9982676-9982695 | None:intergenic | 35.0% | |
| ATTTATCTCTTTGTGGTCCA+AGG | + | chr5_4:9982709-9982728 | Msa0836490:intron | 35.0% | |
| CGGCAAAATTTATTAAGCCA+AGG | - | chr5_4:9982753-9982772 | None:intergenic | 35.0% | |
| TATAGAAGACGAAATCTGCA+AGG | - | chr5_4:9982800-9982819 | None:intergenic | 35.0% | |
| AAAAAAAAGTCCCCCGAATT+CGG | + | chr5_4:9983222-9983241 | Msa0836490:intron | 35.0% | |
| ATGTAATTGGTTGCCGAATT+CGG | - | chr5_4:9983238-9983257 | None:intergenic | 35.0% | |
| ! | GTGTGGTTGATTCATGTAAT+TGG | - | chr5_4:9983251-9983270 | None:intergenic | 35.0% |
| !! | TTGCTGTAGAGTAACTTGTT+TGG | - | chr5_4:9983313-9983332 | None:intergenic | 35.0% |
| GAAGATTCATCATCAGCAAT+AGG | - | chr5_4:9983514-9983533 | None:intergenic | 35.0% | |
| ATATAGTGATACAGATGAGG+TGG | + | chr5_4:9981603-9981622 | Msa0836490:CDS | 35.0% | |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr5_4:9981650-9981669 | Msa0836490:CDS | 35.0% |
| GTGGAATTTAACCATGGTAA+TGG | + | chr5_4:9981775-9981794 | Msa0836490:CDS | 35.0% | |
| GATGTGAAACGTGATTCTAA+TGG | + | chr5_4:9981958-9981977 | Msa0836490:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr5_4:9981993-9982012 | Msa0836490:CDS | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr5_4:9982174-9982193 | None:intergenic | 35.0% | |
| TCACTCAATTTGCGGTAATT+AGG | - | chr5_4:9982198-9982217 | None:intergenic | 35.0% | |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr5_4:9982219-9982238 | Msa0836490:CDS | 35.0% |
| ! | TCATATCTTGGGCTTTTTGA+TGG | + | chr5_4:9982269-9982288 | Msa0836490:CDS | 35.0% |
| ! | CATATCTTGGGCTTTTTGAT+GGG | + | chr5_4:9982270-9982289 | Msa0836490:CDS | 35.0% |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr5_4:9982311-9982330 | Msa0836490:CDS | 35.0% | |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr5_4:9982469-9982488 | Msa0836490:CDS | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr5_4:9982476-9982495 | None:intergenic | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr5_4:9982507-9982526 | Msa0836490:CDS | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr5_4:9982576-9982595 | Msa0836490:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | chr5_4:9982591-9982610 | Msa0836490:CDS | 35.0% |
| ! | ATATAACCCTTTTACCCCTA+TGG | - | chr5_4:9982632-9982651 | None:intergenic | 35.0% |
| AGGGGTAAAAGGGTTATATA+TGG | + | chr5_4:9982633-9982652 | Msa0836490:CDS | 35.0% | |
| ATATATGCAGAACACCTCAA+TGG | - | chr5_4:9982676-9982695 | None:intergenic | 35.0% | |
| ATTTATCTCTTTGTGGTCCA+AGG | + | chr5_4:9982709-9982728 | Msa0836490:intron | 35.0% | |
| CGGCAAAATTTATTAAGCCA+AGG | - | chr5_4:9982753-9982772 | None:intergenic | 35.0% | |
| TATAGAAGACGAAATCTGCA+AGG | - | chr5_4:9982800-9982819 | None:intergenic | 35.0% | |
| AAAAAAAAGTCCCCCGAATT+CGG | + | chr5_4:9983222-9983241 | Msa0836490:intron | 35.0% | |
| ATGTAATTGGTTGCCGAATT+CGG | - | chr5_4:9983238-9983257 | None:intergenic | 35.0% | |
| ! | GTGTGGTTGATTCATGTAAT+TGG | - | chr5_4:9983251-9983270 | None:intergenic | 35.0% |
| !! | TTGCTGTAGAGTAACTTGTT+TGG | - | chr5_4:9983313-9983332 | None:intergenic | 35.0% |
| GAAGATTCATCATCAGCAAT+AGG | - | chr5_4:9983514-9983533 | None:intergenic | 35.0% | |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr5_4:9981649-9981668 | Msa0836490:CDS | 40.0% |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr5_4:9981651-9981670 | Msa0836490:CDS | 40.0% |
| AGCAACGATGTTTGTACTGA+CGG | + | chr5_4:9981739-9981758 | Msa0836490:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr5_4:9981789-9981808 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr5_4:9981793-9981812 | Msa0836490:CDS | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr5_4:9981794-9981813 | Msa0836490:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr5_4:9981811-9981830 | Msa0836490:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr5_4:9981873-9981892 | Msa0836490:CDS | 40.0% | |
| CCTTTCTTACTTCAAACTCG+TGG | - | chr5_4:9981936-9981955 | None:intergenic | 40.0% | |
| ! | CCACGAGTTTGAAGTAAGAA+AGG | + | chr5_4:9981933-9981952 | Msa0836490:CDS | 40.0% |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr5_4:9982056-9982075 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr5_4:9982070-9982089 | None:intergenic | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr5_4:9982106-9982125 | Msa0836490:CDS | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr5_4:9982150-9982169 | None:intergenic | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr5_4:9982151-9982170 | None:intergenic | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr5_4:9982161-9982180 | None:intergenic | 40.0% | |
| TGCGGTAATTAGGCATCAAA+TGG | - | chr5_4:9982188-9982207 | None:intergenic | 40.0% | |
| !! | GGCTTTTTGATGGGTCAAAA+GGG | + | chr5_4:9982279-9982298 | Msa0836490:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr5_4:9982282-9982301 | Msa0836490:CDS | 40.0% |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr5_4:9982308-9982327 | None:intergenic | 40.0% | |
| !! | TGCTACTTTGAGTTACTTCC+AGG | + | chr5_4:9982392-9982411 | Msa0836490:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+GGG | + | chr5_4:9982393-9982412 | Msa0836490:CDS | 40.0% |
| ! | TTTGAGTTACTTCCAGGGTA+AGG | + | chr5_4:9982398-9982417 | Msa0836490:CDS | 40.0% |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr5_4:9982487-9982506 | Msa0836490:CDS | 40.0% | |
| TGTAATTGGTTGCCGAATTC+GGG | - | chr5_4:9983237-9983256 | None:intergenic | 40.0% | |
| TTACATGAATCAACCACACC+AGG | + | chr5_4:9983252-9983271 | Msa0836490:intron | 40.0% | |
| ! | ATCATCAGCAATAGGGCTTT+TGG | - | chr5_4:9983506-9983525 | None:intergenic | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr5_4:9981649-9981668 | Msa0836490:CDS | 40.0% |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr5_4:9981651-9981670 | Msa0836490:CDS | 40.0% |
| AGCAACGATGTTTGTACTGA+CGG | + | chr5_4:9981739-9981758 | Msa0836490:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr5_4:9981789-9981808 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr5_4:9981793-9981812 | Msa0836490:CDS | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr5_4:9981794-9981813 | Msa0836490:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr5_4:9981811-9981830 | Msa0836490:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr5_4:9981873-9981892 | Msa0836490:CDS | 40.0% | |
| CCTTTCTTACTTCAAACTCG+TGG | - | chr5_4:9981936-9981955 | None:intergenic | 40.0% | |
| ! | CCACGAGTTTGAAGTAAGAA+AGG | + | chr5_4:9981933-9981952 | Msa0836490:CDS | 40.0% |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr5_4:9982056-9982075 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr5_4:9982070-9982089 | None:intergenic | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr5_4:9982106-9982125 | Msa0836490:CDS | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr5_4:9982150-9982169 | None:intergenic | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr5_4:9982151-9982170 | None:intergenic | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr5_4:9982161-9982180 | None:intergenic | 40.0% | |
| TGCGGTAATTAGGCATCAAA+TGG | - | chr5_4:9982188-9982207 | None:intergenic | 40.0% | |
| !! | GGCTTTTTGATGGGTCAAAA+GGG | + | chr5_4:9982279-9982298 | Msa0836490:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr5_4:9982282-9982301 | Msa0836490:CDS | 40.0% |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr5_4:9982308-9982327 | None:intergenic | 40.0% | |
| !! | TGCTACTTTGAGTTACTTCC+AGG | + | chr5_4:9982392-9982411 | Msa0836490:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+GGG | + | chr5_4:9982393-9982412 | Msa0836490:CDS | 40.0% |
| ! | TTTGAGTTACTTCCAGGGTA+AGG | + | chr5_4:9982398-9982417 | Msa0836490:CDS | 40.0% |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr5_4:9982487-9982506 | Msa0836490:CDS | 40.0% | |
| TGTAATTGGTTGCCGAATTC+GGG | - | chr5_4:9983237-9983256 | None:intergenic | 40.0% | |
| TTACATGAATCAACCACACC+AGG | + | chr5_4:9983252-9983271 | Msa0836490:intron | 40.0% | |
| ! | ATCATCAGCAATAGGGCTTT+TGG | - | chr5_4:9983506-9983525 | None:intergenic | 40.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr5_4:9981654-9981673 | Msa0836490:CDS | 45.0% |
| GACGGTGTGGAATTTAACCA+TGG | + | chr5_4:9981769-9981788 | Msa0836490:CDS | 45.0% | |
| !! | GGGCTTTTTGATGGGTCAAA+AGG | + | chr5_4:9982278-9982297 | Msa0836490:CDS | 45.0% |
| ATTTCACGGATCATCAGGCA+AGG | + | chr5_4:9982343-9982362 | Msa0836490:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr5_4:9982344-9982363 | Msa0836490:CDS | 45.0% | |
| TATCAGTATCAGCCTTACCC+TGG | - | chr5_4:9982413-9982432 | None:intergenic | 45.0% | |
| AGAAACAACCCCTTGCCATA+GGG | + | chr5_4:9982614-9982633 | Msa0836490:CDS | 45.0% | |
| ATGCAGAACACCTCAATGGT+GGG | - | chr5_4:9982672-9982691 | None:intergenic | 45.0% | |
| TATGCAGAACACCTCAATGG+TGG | - | chr5_4:9982673-9982692 | None:intergenic | 45.0% | |
| TCTCTTTGTGGTCCAAGGTT+TGG | + | chr5_4:9982714-9982733 | Msa0836490:intron | 45.0% | |
| CTCTTTGTGGTCCAAGGTTT+GGG | + | chr5_4:9982715-9982734 | Msa0836490:intron | 45.0% | |
| GGTGAAAGAAACCCAAACCT+TGG | - | chr5_4:9982729-9982748 | None:intergenic | 45.0% | |
| TTGGGTTTCTTTCACCTCCT+TGG | + | chr5_4:9982733-9982752 | Msa0836490:intron | 45.0% | |
| AGAAGACGAAATCTGCAAGG+AGG | - | chr5_4:9982797-9982816 | None:intergenic | 45.0% | |
| TAATTGGTTGCCGAATTCGG+GGG | - | chr5_4:9983235-9983254 | None:intergenic | 45.0% | |
| GTAATTGGTTGCCGAATTCG+GGG | - | chr5_4:9983236-9983255 | None:intergenic | 45.0% | |
| ! | GTTTGCTAAGCTCAGCAAGA+AGG | + | chr5_4:9983449-9983468 | Msa0836490:intron | 45.0% |
| AGGACTGAGTCCAAGATGAT+AGG | + | chr5_4:9983469-9983488 | Msa0836490:CDS | 45.0% | |
| ACTGAGTCCAAGATGATAGG+CGG | + | chr5_4:9983472-9983491 | Msa0836490:CDS | 45.0% | |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr5_4:9981654-9981673 | Msa0836490:CDS | 45.0% |
| GACGGTGTGGAATTTAACCA+TGG | + | chr5_4:9981769-9981788 | Msa0836490:CDS | 45.0% | |
| !! | GGGCTTTTTGATGGGTCAAA+AGG | + | chr5_4:9982278-9982297 | Msa0836490:CDS | 45.0% |
| ATTTCACGGATCATCAGGCA+AGG | + | chr5_4:9982343-9982362 | Msa0836490:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr5_4:9982344-9982363 | Msa0836490:CDS | 45.0% | |
| TATCAGTATCAGCCTTACCC+TGG | - | chr5_4:9982413-9982432 | None:intergenic | 45.0% | |
| AGAAACAACCCCTTGCCATA+GGG | + | chr5_4:9982614-9982633 | Msa0836490:CDS | 45.0% | |
| ATGCAGAACACCTCAATGGT+GGG | - | chr5_4:9982672-9982691 | None:intergenic | 45.0% | |
| TATGCAGAACACCTCAATGG+TGG | - | chr5_4:9982673-9982692 | None:intergenic | 45.0% | |
| TCTCTTTGTGGTCCAAGGTT+TGG | + | chr5_4:9982714-9982733 | Msa0836490:intron | 45.0% | |
| CTCTTTGTGGTCCAAGGTTT+GGG | + | chr5_4:9982715-9982734 | Msa0836490:intron | 45.0% | |
| GGTGAAAGAAACCCAAACCT+TGG | - | chr5_4:9982729-9982748 | None:intergenic | 45.0% | |
| TTGGGTTTCTTTCACCTCCT+TGG | + | chr5_4:9982733-9982752 | Msa0836490:intron | 45.0% | |
| AGAAGACGAAATCTGCAAGG+AGG | - | chr5_4:9982797-9982816 | None:intergenic | 45.0% | |
| TAATTGGTTGCCGAATTCGG+GGG | - | chr5_4:9983235-9983254 | None:intergenic | 45.0% | |
| GTAATTGGTTGCCGAATTCG+GGG | - | chr5_4:9983236-9983255 | None:intergenic | 45.0% | |
| ! | GTTTGCTAAGCTCAGCAAGA+AGG | + | chr5_4:9983449-9983468 | Msa0836490:intron | 45.0% |
| AGGACTGAGTCCAAGATGAT+AGG | + | chr5_4:9983469-9983488 | Msa0836490:CDS | 45.0% | |
| ACTGAGTCCAAGATGATAGG+CGG | + | chr5_4:9983472-9983491 | Msa0836490:CDS | 45.0% | |
| ! | TGTACTGACGGAGATGCAGA+CGG | + | chr5_4:9981751-9981770 | Msa0836490:CDS | 50.0% |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr5_4:9982234-9982253 | Msa0836490:CDS | 50.0% | |
| !! | AAGGGGTTGTTTCTCCATGG+TGG | - | chr5_4:9982608-9982627 | None:intergenic | 50.0% |
| GAGAAACAACCCCTTGCCAT+AGG | + | chr5_4:9982613-9982632 | Msa0836490:CDS | 50.0% | |
| GAAACAACCCCTTGCCATAG+GGG | + | chr5_4:9982615-9982634 | Msa0836490:CDS | 50.0% | |
| ! | CCTTTTACCCCTATGGCAAG+GGG | - | chr5_4:9982625-9982644 | None:intergenic | 50.0% |
| ! | CCCTTTTACCCCTATGGCAA+GGG | - | chr5_4:9982626-9982645 | None:intergenic | 50.0% |
| CCCTTGCCATAGGGGTAAAA+GGG | + | chr5_4:9982623-9982642 | Msa0836490:CDS | 50.0% | |
| ! | ACCCTTTTACCCCTATGGCA+AGG | - | chr5_4:9982627-9982646 | None:intergenic | 50.0% |
| !! | TTTTTGGCGTCCCACCATTG+AGG | + | chr5_4:9982659-9982678 | Msa0836490:CDS | 50.0% |
| TTGCAAGCCGCCTATCATCT+TGG | - | chr5_4:9983482-9983501 | None:intergenic | 50.0% | |
| TGTGCAACCGCTATTGCTGA+TGG | + | chr5_4:9983543-9983562 | Msa0836490:CDS | 50.0% | |
| ! | AGTATGGTAGCGACTAGCAG+TGG | - | chr5_4:9983604-9983623 | None:intergenic | 50.0% |
| ! | TGTACTGACGGAGATGCAGA+CGG | + | chr5_4:9981751-9981770 | Msa0836490:CDS | 50.0% |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr5_4:9982234-9982253 | Msa0836490:CDS | 50.0% | |
| !! | AAGGGGTTGTTTCTCCATGG+TGG | - | chr5_4:9982608-9982627 | None:intergenic | 50.0% |
| GAGAAACAACCCCTTGCCAT+AGG | + | chr5_4:9982613-9982632 | Msa0836490:CDS | 50.0% | |
| GAAACAACCCCTTGCCATAG+GGG | + | chr5_4:9982615-9982634 | Msa0836490:CDS | 50.0% | |
| ! | CCTTTTACCCCTATGGCAAG+GGG | - | chr5_4:9982625-9982644 | None:intergenic | 50.0% |
| ! | CCCTTTTACCCCTATGGCAA+GGG | - | chr5_4:9982626-9982645 | None:intergenic | 50.0% |
| CCCTTGCCATAGGGGTAAAA+GGG | + | chr5_4:9982623-9982642 | Msa0836490:CDS | 50.0% | |
| ! | ACCCTTTTACCCCTATGGCA+AGG | - | chr5_4:9982627-9982646 | None:intergenic | 50.0% |
| !! | TTTTTGGCGTCCCACCATTG+AGG | + | chr5_4:9982659-9982678 | Msa0836490:CDS | 50.0% |
| TTGCAAGCCGCCTATCATCT+TGG | - | chr5_4:9983482-9983501 | None:intergenic | 50.0% | |
| TGTGCAACCGCTATTGCTGA+TGG | + | chr5_4:9983543-9983562 | Msa0836490:CDS | 50.0% | |
| ! | AGTATGGTAGCGACTAGCAG+TGG | - | chr5_4:9983604-9983623 | None:intergenic | 50.0% |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr5_4:9982291-9982310 | Msa0836490:CDS | 55.0% | |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr5_4:9982297-9982316 | Msa0836490:CDS | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr5_4:9982298-9982317 | Msa0836490:CDS | 55.0% | |
| !! | GGCAAGGGGTTGTTTCTCCA+TGG | - | chr5_4:9982611-9982630 | None:intergenic | 55.0% |
| CCCCTTGCCATAGGGGTAAA+AGG | + | chr5_4:9982622-9982641 | Msa0836490:CDS | 55.0% | |
| GAATCAACCACACCAGGCCT+CGG | + | chr5_4:9983258-9983277 | Msa0836490:intron | 55.0% | |
| GCAACCGCTATTGCTGATGG+CGG | + | chr5_4:9983546-9983565 | Msa0836490:CDS | 55.0% | |
| GGTAGCGACTAGCAGTGGTT+GGG | - | chr5_4:9983599-9983618 | None:intergenic | 55.0% | |
| ! | TGGTAGCGACTAGCAGTGGT+TGG | - | chr5_4:9983600-9983619 | None:intergenic | 55.0% |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr5_4:9982291-9982310 | Msa0836490:CDS | 55.0% | |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr5_4:9982297-9982316 | Msa0836490:CDS | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr5_4:9982298-9982317 | Msa0836490:CDS | 55.0% | |
| !! | GGCAAGGGGTTGTTTCTCCA+TGG | - | chr5_4:9982611-9982630 | None:intergenic | 55.0% |
| CCCCTTGCCATAGGGGTAAA+AGG | + | chr5_4:9982622-9982641 | Msa0836490:CDS | 55.0% | |
| GAATCAACCACACCAGGCCT+CGG | + | chr5_4:9983258-9983277 | Msa0836490:intron | 55.0% | |
| GCAACCGCTATTGCTGATGG+CGG | + | chr5_4:9983546-9983565 | Msa0836490:CDS | 55.0% | |
| GGTAGCGACTAGCAGTGGTT+GGG | - | chr5_4:9983599-9983618 | None:intergenic | 55.0% | |
| ! | TGGTAGCGACTAGCAGTGGT+TGG | - | chr5_4:9983600-9983619 | None:intergenic | 55.0% |
| TGACGGAGATGCAGACGGTG+TGG | + | chr5_4:9981756-9981775 | Msa0836490:CDS | 60.0% | |
| TGATAGTCCGAGGCCTGGTG+TGG | - | chr5_4:9983268-9983287 | None:intergenic | 60.0% | |
| CACTCTGATAGTCCGAGGCC+TGG | - | chr5_4:9983273-9983292 | None:intergenic | 60.0% | |
| GCCTCGGACTATCAGAGTGC+AGG | + | chr5_4:9983274-9983293 | Msa0836490:CDS | 60.0% | |
| GCCTGCACTCTGATAGTCCG+AGG | - | chr5_4:9983278-9983297 | None:intergenic | 60.0% | |
| CGAGCCGCCATCAGCAATAG+CGG | - | chr5_4:9983553-9983572 | None:intergenic | 60.0% | |
| !! | TATTGCTGATGGCGGCTCGC+TGG | + | chr5_4:9983554-9983573 | Msa0836490:CDS | 60.0% |
| TGACGGAGATGCAGACGGTG+TGG | + | chr5_4:9981756-9981775 | Msa0836490:CDS | 60.0% | |
| TGATAGTCCGAGGCCTGGTG+TGG | - | chr5_4:9983268-9983287 | None:intergenic | 60.0% | |
| CACTCTGATAGTCCGAGGCC+TGG | - | chr5_4:9983273-9983292 | None:intergenic | 60.0% | |
| GCCTCGGACTATCAGAGTGC+AGG | + | chr5_4:9983274-9983293 | Msa0836490:CDS | 60.0% | |
| GCCTGCACTCTGATAGTCCG+AGG | - | chr5_4:9983278-9983297 | None:intergenic | 60.0% | |
| CGAGCCGCCATCAGCAATAG+CGG | - | chr5_4:9983553-9983572 | None:intergenic | 60.0% | |
| !! | TATTGCTGATGGCGGCTCGC+TGG | + | chr5_4:9983554-9983573 | Msa0836490:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9981565 | 9983630 | 9981565 | ID=Msa0836490;Name=Msa0836490 |
| chr5_4 | mRNA | 9981565 | 9983630 | 9981565 | ID=Msa0836490-mRNA-1;Parent=Msa0836490;Name=Msa0836490-mRNA-1;_AED=0.11;_eAED=0.13;_QI=0|0|0|0.33|1|1|3|0|448 |
| chr5_4 | exon | 9981565 | 9982680 | 9981565 | ID=Msa0836490-mRNA-1:exon:4434;Parent=Msa0836490-mRNA-1 |
| chr5_4 | exon | 9983274 | 9983337 | 9983274 | ID=Msa0836490-mRNA-1:exon:4435;Parent=Msa0836490-mRNA-1 |
| chr5_4 | exon | 9983464 | 9983630 | 9983464 | ID=Msa0836490-mRNA-1:exon:4436;Parent=Msa0836490-mRNA-1 |
| chr5_4 | CDS | 9981565 | 9982680 | 9981565 | ID=Msa0836490-mRNA-1:cds;Parent=Msa0836490-mRNA-1 |
| chr5_4 | CDS | 9983274 | 9983337 | 9983274 | ID=Msa0836490-mRNA-1:cds;Parent=Msa0836490-mRNA-1 |
| chr5_4 | CDS | 9983464 | 9983630 | 9983464 | ID=Msa0836490-mRNA-1:cds;Parent=Msa0836490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
