Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836930 | XP_003611835.1 | 75.419 | 179 | 31 | 4 | 1 | 167 | 1 | 178 | 9.89e-68 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836930 | sp|Q9SV15|WRK11_ARATH | 58.182 | 55 | 20 | 2 | 115 | 166 | 249 | 303 | 6.16e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836930 | G7K9F0 | 75.419 | 179 | 31 | 4 | 1 | 167 | 1 | 178 | 4.73e-68 | 214 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0836930 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836930 | MtrunA17_Chr5g0402931 | 75.419 | 179 | 31 | 4 | 1 | 167 | 1 | 178 | 9.10e-72 | 214 |
| Msa0836930 | MtrunA17_Chr5g0402951 | 52.542 | 118 | 45 | 5 | 1 | 111 | 1 | 114 | 1.84e-22 | 92.0 |
| Msa0836930 | MtrunA17_Chr1g0147881 | 61.818 | 55 | 18 | 2 | 115 | 166 | 265 | 319 | 1.62e-14 | 69.7 |
| Msa0836930 | MtrunA17_Chr4g0053281 | 55.357 | 56 | 22 | 2 | 114 | 166 | 268 | 323 | 5.66e-13 | 65.5 |
| Msa0836930 | MtrunA17_Chr5g0401821 | 54.545 | 55 | 22 | 2 | 115 | 166 | 202 | 256 | 5.76e-13 | 65.1 |
| Msa0836930 | MtrunA17_Chr5g0402961 | 53.846 | 104 | 39 | 4 | 1 | 95 | 1 | 104 | 7.40e-13 | 65.5 |
| Msa0836930 | MtrunA17_Chr7g0228941 | 49.180 | 61 | 28 | 2 | 112 | 169 | 52 | 112 | 1.04e-12 | 61.6 |
| Msa0836930 | MtrunA17_Chr4g0071521 | 53.448 | 58 | 24 | 2 | 112 | 166 | 245 | 302 | 1.16e-12 | 64.3 |
| Msa0836930 | MtrunA17_Chr1g0184691 | 55.357 | 56 | 22 | 2 | 114 | 166 | 295 | 350 | 1.25e-12 | 64.7 |
| Msa0836930 | MtrunA17_Chr7g0270191 | 41.270 | 63 | 35 | 1 | 108 | 168 | 141 | 203 | 6.28e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836930 | AT4G31550.1 | 58.182 | 55 | 20 | 2 | 115 | 166 | 249 | 303 | 6.26e-13 | 65.9 |
| Msa0836930 | AT4G31550.2 | 58.182 | 55 | 20 | 2 | 115 | 166 | 248 | 302 | 6.29e-13 | 65.5 |
| Msa0836930 | AT2G23320.1 | 55.357 | 56 | 22 | 2 | 114 | 166 | 242 | 297 | 1.26e-12 | 64.7 |
| Msa0836930 | AT2G30590.1 | 52.542 | 59 | 25 | 2 | 114 | 169 | 315 | 373 | 1.39e-12 | 65.1 |
| Msa0836930 | AT2G24570.1 | 58.182 | 55 | 20 | 2 | 115 | 166 | 246 | 300 | 2.87e-12 | 63.9 |
| Msa0836930 | AT1G29280.1 | 50.847 | 59 | 26 | 2 | 112 | 167 | 74 | 132 | 2.89e-12 | 63.2 |
| Msa0836930 | AT4G24240.1 | 53.448 | 58 | 24 | 2 | 112 | 166 | 281 | 338 | 7.11e-12 | 62.8 |
| Msa0836930 | AT3G04670.1 | 54.545 | 55 | 22 | 2 | 115 | 166 | 265 | 319 | 5.31e-11 | 60.1 |
| Msa0836930 | AT5G49520.1 | 40.323 | 62 | 35 | 1 | 108 | 167 | 217 | 278 | 7.55e-11 | 60.1 |
Find 41 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCGAAAGAATGGGAAAAT+TGG | 0.216153 | 5_4:+10643568 | Msa0836930:CDS |
| AACATGGGATTTGGGGTTCT+TGG | 0.247824 | 5_4:-10643648 | None:intergenic |
| TTGAGAGAAACATGGGATTT+GGG | 0.255863 | 5_4:-10643656 | None:intergenic |
| GTTGAGAGAAACATGGGATT+TGG | 0.286036 | 5_4:-10643657 | None:intergenic |
| CCGAGAAAATCGCGAAAGAA+TGG | 0.366084 | 5_4:+10643559 | Msa0836930:CDS |
| CGCGAAAGAATGGGAAAATT+GGG | 0.410502 | 5_4:+10643569 | Msa0836930:CDS |
| CGATCCTCGTATTTCCTCGC+TGG | 0.420110 | 5_4:-10644787 | None:intergenic |
| GTGAAGGTGGCTTAGGTTTG+AGG | 0.436792 | 5_4:-10643613 | None:intergenic |
| AACTACACGTGGTGGAAATA+CGG | 0.437577 | 5_4:+10643817 | Msa0836930:CDS |
| CGAGAAAATCGCGAAAGAAT+GGG | 0.438216 | 5_4:+10643560 | Msa0836930:CDS |
| TGTTGAGAATCCTCCTCAAA+TGG | 0.445286 | 5_4:+10643481 | Msa0836930:CDS |
| TGGTCATCGTAACGTACAAT+GGG | 0.449249 | 5_4:+10644830 | Msa0836930:CDS |
| GTTGGACGTGAAGGTGGCTT+AGG | 0.454037 | 5_4:-10643620 | None:intergenic |
| GGATTTGGGGTTCTTGGAAA+CGG | 0.454078 | 5_4:-10643642 | None:intergenic |
| GCTTCTTCAGTGTAATGAAT+CGG | 0.476213 | 5_4:-10643745 | None:intergenic |
| TTGGGGTTCTTGGAAACGGT+TGG | 0.488034 | 5_4:-10643638 | None:intergenic |
| TGTTTGTGATCTTCCATTTG+AGG | 0.497029 | 5_4:-10643494 | None:intergenic |
| TGAAGGTGGCTTAGGTTTGA+GGG | 0.497200 | 5_4:-10643612 | None:intergenic |
| GCAATTCACCATGCTACACT+TGG | 0.505881 | 5_4:-10644764 | None:intergenic |
| ATACGGTCGTTATCAGATCA+AGG | 0.519956 | 5_4:+10643834 | Msa0836930:CDS |
| AGAGAATTTACGTGGAAAAG+AGG | 0.527212 | 5_4:+10643776 | Msa0836930:CDS |
| GTGGTCATCGTAACGTACAA+TGG | 0.534478 | 5_4:+10644829 | Msa0836930:CDS |
| CGACTTCGCTTTCGCAGAGT+AGG | 0.538883 | 5_4:-10643449 | None:intergenic |
| TTGTGATCTTCCATTTGAGG+AGG | 0.549172 | 5_4:-10643491 | None:intergenic |
| GATCCTCGTATTTCCTCGCT+GGG | 0.560555 | 5_4:-10644786 | None:intergenic |
| TTGGAAACGGTTGGACGTGA+AGG | 0.565726 | 5_4:-10643629 | None:intergenic |
| TGAGAGAAACATGGGATTTG+GGG | 0.568094 | 5_4:-10643655 | None:intergenic |
| GAGAATTTACGTGGAAAAGA+GGG | 0.576655 | 5_4:+10643777 | Msa0836930:CDS |
| GAAACGGTTGGACGTGAAGG+TGG | 0.592441 | 5_4:-10643626 | None:intergenic |
| TACGTTACGATGACCACCGT+TGG | 0.600577 | 5_4:-10644823 | None:intergenic |
| TACGGTCGTTATCAGATCAA+GGG | 0.616705 | 5_4:+10643835 | Msa0836930:CDS |
| AGATTATTCCAAGTGTAGCA+TGG | 0.624298 | 5_4:+10644756 | Msa0836930:CDS |
| CTTCATCTAACTACACGTGG+TGG | 0.625613 | 5_4:+10643809 | Msa0836930:CDS |
| ATCAGATCAAGGGCTCAACA+AGG | 0.679629 | 5_4:+10643845 | Msa0836930:CDS |
| AAACTTCATCTAACTACACG+TGG | 0.681056 | 5_4:+10643806 | Msa0836930:CDS |
| AATTAACAAGAGAATTTACG+TGG | 0.685647 | 5_4:+10643768 | Msa0836930:CDS |
| TCGTGCACGAGATGATCCAA+CGG | 0.690601 | 5_4:+10644807 | Msa0836930:CDS |
| TTGCCCAGCGAGGAAATACG+AGG | 0.701881 | 5_4:+10644783 | Msa0836930:CDS |
| GCATGGTGAATTGCCCAGCG+AGG | 0.722194 | 5_4:+10644773 | Msa0836930:CDS |
| TGCACGAGATGATCCAACGG+TGG | 0.730962 | 5_4:+10644810 | Msa0836930:CDS |
| GGTCATCGTAACGTACAATG+GGG | 0.758559 | 5_4:+10644831 | Msa0836930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAGTAAAGTGTTTTTTA+GGG | - | chr5_4:10643918-10643937 | None:intergenic | 15.0% |
| !!! | ATATTTTGATTAACAAAATG+TGG | - | chr5_4:10644289-10644308 | None:intergenic | 15.0% |
| !! | AAAAGTTAAAACATAACTAA+CGG | - | chr5_4:10644689-10644708 | None:intergenic | 15.0% |
| !!! | TAAAAGTAAAGTGTTTTTTA+GGG | - | chr5_4:10643918-10643937 | None:intergenic | 15.0% |
| !!! | ATATTTTGATTAACAAAATG+TGG | - | chr5_4:10644289-10644308 | None:intergenic | 15.0% |
| !! | AAAAGTTAAAACATAACTAA+CGG | - | chr5_4:10644689-10644708 | None:intergenic | 15.0% |
| !!! | AATGAAAGATTGAATTTTGA+GGG | - | chr5_4:10643721-10643740 | None:intergenic | 20.0% |
| !!! | AAATGAAAGATTGAATTTTG+AGG | - | chr5_4:10643722-10643741 | None:intergenic | 20.0% |
| !!! | GTAAAAGTAAAGTGTTTTTT+AGG | - | chr5_4:10643919-10643938 | None:intergenic | 20.0% |
| !! | TATAATATAATATTGACACG+AGG | - | chr5_4:10644087-10644106 | None:intergenic | 20.0% |
| !! | TTCTATTCTATTAAATTCTC+CGG | - | chr5_4:10644548-10644567 | None:intergenic | 20.0% |
| !!! | TATTTGAAAGTGTTCTATAA+AGG | + | chr5_4:10644631-10644650 | Msa0836930:intron | 20.0% |
| !!! | ACAAAAAAGAAATCAACTTT+TGG | - | chr5_4:10644727-10644746 | None:intergenic | 20.0% |
| !!! | AATGAAAGATTGAATTTTGA+GGG | - | chr5_4:10643721-10643740 | None:intergenic | 20.0% |
| !!! | AAATGAAAGATTGAATTTTG+AGG | - | chr5_4:10643722-10643741 | None:intergenic | 20.0% |
| !!! | GTAAAAGTAAAGTGTTTTTT+AGG | - | chr5_4:10643919-10643938 | None:intergenic | 20.0% |
| !! | TATAATATAATATTGACACG+AGG | - | chr5_4:10644087-10644106 | None:intergenic | 20.0% |
| !! | TTCTATTCTATTAAATTCTC+CGG | - | chr5_4:10644548-10644567 | None:intergenic | 20.0% |
| !!! | TATTTGAAAGTGTTCTATAA+AGG | + | chr5_4:10644631-10644650 | Msa0836930:intron | 20.0% |
| !!! | ACAAAAAAGAAATCAACTTT+TGG | - | chr5_4:10644727-10644746 | None:intergenic | 20.0% |
| ! | AATTAACAAGAGAATTTACG+TGG | + | chr5_4:10643768-10643787 | Msa0836930:CDS | 25.0% |
| !! | ATTGCATTTTCATCGTAATT+TGG | - | chr5_4:10644025-10644044 | None:intergenic | 25.0% |
| ! | AAATTACGATGAAAATGCAA+TGG | + | chr5_4:10644024-10644043 | Msa0836930:intron | 25.0% |
| ! | TAAGCAAGTAGTCAAATAAA+AGG | + | chr5_4:10644517-10644536 | Msa0836930:intron | 25.0% |
| ! | AGTCAAATAAAAGGATTAAC+CGG | + | chr5_4:10644526-10644545 | Msa0836930:intron | 25.0% |
| ! | TCGAAATACTTGTAATTTCA+TGG | + | chr5_4:10644574-10644593 | Msa0836930:intron | 25.0% |
| ! | AATTAACAAGAGAATTTACG+TGG | + | chr5_4:10643768-10643787 | Msa0836930:CDS | 25.0% |
| !! | ATTGCATTTTCATCGTAATT+TGG | - | chr5_4:10644025-10644044 | None:intergenic | 25.0% |
| ! | AAATTACGATGAAAATGCAA+TGG | + | chr5_4:10644024-10644043 | Msa0836930:intron | 25.0% |
| ! | TAAGCAAGTAGTCAAATAAA+AGG | + | chr5_4:10644517-10644536 | Msa0836930:intron | 25.0% |
| ! | AGTCAAATAAAAGGATTAAC+CGG | + | chr5_4:10644526-10644545 | Msa0836930:intron | 25.0% |
| ! | TCGAAATACTTGTAATTTCA+TGG | + | chr5_4:10644574-10644593 | Msa0836930:intron | 25.0% |
| !! | TTGAATTTTGAGGGTGAAAA+TGG | - | chr5_4:10643712-10643731 | None:intergenic | 30.0% |
| TAACTACTCCTTAACTTTCT+GGG | + | chr5_4:10643884-10643903 | Msa0836930:intron | 30.0% | |
| TTACTTAGTGTGTGTTTGTT+TGG | + | chr5_4:10643935-10643954 | Msa0836930:intron | 30.0% | |
| CTTGAAACTTAATCACGTTT+GGG | + | chr5_4:10643964-10643983 | Msa0836930:intron | 30.0% | |
| GATGAAAATGCAATGGAAAT+TGG | + | chr5_4:10644031-10644050 | Msa0836930:intron | 30.0% | |
| !! | AATGCAATGGAAATTGGTTT+TGG | + | chr5_4:10644037-10644056 | Msa0836930:intron | 30.0% |
| !!! | ATGCAATGGAAATTGGTTTT+GGG | + | chr5_4:10644038-10644057 | Msa0836930:intron | 30.0% |
| !! | ACTTTTACCATATGCTACTT+TGG | - | chr5_4:10644203-10644222 | None:intergenic | 30.0% |
| CTATAAAGGAGAGATTAATC+TGG | + | chr5_4:10644645-10644664 | Msa0836930:intron | 30.0% | |
| !! | TTGAATTTTGAGGGTGAAAA+TGG | - | chr5_4:10643712-10643731 | None:intergenic | 30.0% |
| TAACTACTCCTTAACTTTCT+GGG | + | chr5_4:10643884-10643903 | Msa0836930:intron | 30.0% | |
| TTACTTAGTGTGTGTTTGTT+TGG | + | chr5_4:10643935-10643954 | Msa0836930:intron | 30.0% | |
| CTTGAAACTTAATCACGTTT+GGG | + | chr5_4:10643964-10643983 | Msa0836930:intron | 30.0% | |
| GATGAAAATGCAATGGAAAT+TGG | + | chr5_4:10644031-10644050 | Msa0836930:intron | 30.0% | |
| !! | AATGCAATGGAAATTGGTTT+TGG | + | chr5_4:10644037-10644056 | Msa0836930:intron | 30.0% |
| !!! | ATGCAATGGAAATTGGTTTT+GGG | + | chr5_4:10644038-10644057 | Msa0836930:intron | 30.0% |
| !! | ACTTTTACCATATGCTACTT+TGG | - | chr5_4:10644203-10644222 | None:intergenic | 30.0% |
| CTATAAAGGAGAGATTAATC+TGG | + | chr5_4:10644645-10644664 | Msa0836930:intron | 30.0% | |
| TGTTTGTGATCTTCCATTTG+AGG | - | chr5_4:10643497-10643516 | None:intergenic | 35.0% | |
| TTGAGAGAAACATGGGATTT+GGG | - | chr5_4:10643659-10643678 | None:intergenic | 35.0% | |
| GCTTCTTCAGTGTAATGAAT+CGG | - | chr5_4:10643748-10643767 | None:intergenic | 35.0% | |
| AGAGAATTTACGTGGAAAAG+AGG | + | chr5_4:10643776-10643795 | Msa0836930:CDS | 35.0% | |
| GAGAATTTACGTGGAAAAGA+GGG | + | chr5_4:10643777-10643796 | Msa0836930:CDS | 35.0% | |
| AAACTTCATCTAACTACACG+TGG | + | chr5_4:10643806-10643825 | Msa0836930:CDS | 35.0% | |
| CTAACTACTCCTTAACTTTC+TGG | + | chr5_4:10643883-10643902 | Msa0836930:intron | 35.0% | |
| AATTGCATCCCAGAAAGTTA+AGG | - | chr5_4:10643895-10643914 | None:intergenic | 35.0% | |
| TAGTGTGTGTTTGTTTGGTA+TGG | + | chr5_4:10643940-10643959 | Msa0836930:intron | 35.0% | |
| CCAAACGTGATTAAGTTTCA+AGG | - | chr5_4:10643966-10643985 | None:intergenic | 35.0% | |
| CCTTGAAACTTAATCACGTT+TGG | + | chr5_4:10643963-10643982 | Msa0836930:intron | 35.0% | |
| AGGATGTTTGGAAACAAGTT+TGG | - | chr5_4:10644067-10644086 | None:intergenic | 35.0% | |
| AATATTGACACGAGGATGTT+TGG | - | chr5_4:10644079-10644098 | None:intergenic | 35.0% | |
| CAAATGACCAAAGTAGCATA+TGG | + | chr5_4:10644193-10644212 | Msa0836930:intron | 35.0% | |
| ATGACTGGGTAATAGTCATT+TGG | - | chr5_4:10644417-10644436 | None:intergenic | 35.0% | |
| ACTATTACCCAGTCATGAAT+CGG | + | chr5_4:10644421-10644440 | Msa0836930:intron | 35.0% | |
| AGATTATTCCAAGTGTAGCA+TGG | + | chr5_4:10644756-10644775 | Msa0836930:CDS | 35.0% | |
| TGTTTGTGATCTTCCATTTG+AGG | - | chr5_4:10643497-10643516 | None:intergenic | 35.0% | |
| TTGAGAGAAACATGGGATTT+GGG | - | chr5_4:10643659-10643678 | None:intergenic | 35.0% | |
| GCTTCTTCAGTGTAATGAAT+CGG | - | chr5_4:10643748-10643767 | None:intergenic | 35.0% | |
| AGAGAATTTACGTGGAAAAG+AGG | + | chr5_4:10643776-10643795 | Msa0836930:CDS | 35.0% | |
| GAGAATTTACGTGGAAAAGA+GGG | + | chr5_4:10643777-10643796 | Msa0836930:CDS | 35.0% | |
| AAACTTCATCTAACTACACG+TGG | + | chr5_4:10643806-10643825 | Msa0836930:CDS | 35.0% | |
| CTAACTACTCCTTAACTTTC+TGG | + | chr5_4:10643883-10643902 | Msa0836930:intron | 35.0% | |
| AATTGCATCCCAGAAAGTTA+AGG | - | chr5_4:10643895-10643914 | None:intergenic | 35.0% | |
| TAGTGTGTGTTTGTTTGGTA+TGG | + | chr5_4:10643940-10643959 | Msa0836930:intron | 35.0% | |
| CCAAACGTGATTAAGTTTCA+AGG | - | chr5_4:10643966-10643985 | None:intergenic | 35.0% | |
| CCTTGAAACTTAATCACGTT+TGG | + | chr5_4:10643963-10643982 | Msa0836930:intron | 35.0% | |
| AGGATGTTTGGAAACAAGTT+TGG | - | chr5_4:10644067-10644086 | None:intergenic | 35.0% | |
| AATATTGACACGAGGATGTT+TGG | - | chr5_4:10644079-10644098 | None:intergenic | 35.0% | |
| CAAATGACCAAAGTAGCATA+TGG | + | chr5_4:10644193-10644212 | Msa0836930:intron | 35.0% | |
| ATGACTGGGTAATAGTCATT+TGG | - | chr5_4:10644417-10644436 | None:intergenic | 35.0% | |
| ACTATTACCCAGTCATGAAT+CGG | + | chr5_4:10644421-10644440 | Msa0836930:intron | 35.0% | |
| AGATTATTCCAAGTGTAGCA+TGG | + | chr5_4:10644756-10644775 | Msa0836930:CDS | 35.0% | |
| TGTTGAGAATCCTCCTCAAA+TGG | + | chr5_4:10643481-10643500 | Msa0836930:CDS | 40.0% | |
| TTGTGATCTTCCATTTGAGG+AGG | - | chr5_4:10643494-10643513 | None:intergenic | 40.0% | |
| ! | CCATTCTTTCGCGATTTTCT+CGG | - | chr5_4:10643562-10643581 | None:intergenic | 40.0% |
| CGAGAAAATCGCGAAAGAAT+GGG | + | chr5_4:10643560-10643579 | Msa0836930:CDS | 40.0% | |
| TCGCGAAAGAATGGGAAAAT+TGG | + | chr5_4:10643568-10643587 | Msa0836930:CDS | 40.0% | |
| CGCGAAAGAATGGGAAAATT+GGG | + | chr5_4:10643569-10643588 | Msa0836930:CDS | 40.0% | |
| TGAGAGAAACATGGGATTTG+GGG | - | chr5_4:10643658-10643677 | None:intergenic | 40.0% | |
| GTTGAGAGAAACATGGGATT+TGG | - | chr5_4:10643660-10643679 | None:intergenic | 40.0% | |
| !! | AGATGGGTTGAGAGAAACAT+GGG | - | chr5_4:10643666-10643685 | None:intergenic | 40.0% |
| !! | AAGATGGGTTGAGAGAAACA+TGG | - | chr5_4:10643667-10643686 | None:intergenic | 40.0% |
| ! | AACTACACGTGGTGGAAATA+CGG | + | chr5_4:10643817-10643836 | Msa0836930:CDS | 40.0% |
| ATACGGTCGTTATCAGATCA+AGG | + | chr5_4:10643834-10643853 | Msa0836930:CDS | 40.0% | |
| TACGGTCGTTATCAGATCAA+GGG | + | chr5_4:10643835-10643854 | Msa0836930:CDS | 40.0% | |
| AATTTGGCTAAAGCTGAAGC+TGG | - | chr5_4:10644009-10644028 | None:intergenic | 40.0% | |
| ! | CTTTCAACCGATTCATGACT+GGG | - | chr5_4:10644431-10644450 | None:intergenic | 40.0% |
| ! | ACTTTCAACCGATTCATGAC+TGG | - | chr5_4:10644432-10644451 | None:intergenic | 40.0% |
| AGTCATGAATCGGTTGAAAG+TGG | + | chr5_4:10644431-10644450 | Msa0836930:intron | 40.0% | |
| GTCATGAATCGGTTGAAAGT+GGG | + | chr5_4:10644432-10644451 | Msa0836930:intron | 40.0% | |
| GAAAGTGGGTGGATAAACTT+TGG | + | chr5_4:10644446-10644465 | Msa0836930:intron | 40.0% | |
| TGGTCATCGTAACGTACAAT+GGG | + | chr5_4:10644830-10644849 | Msa0836930:CDS | 40.0% | |
| TGTTGAGAATCCTCCTCAAA+TGG | + | chr5_4:10643481-10643500 | Msa0836930:CDS | 40.0% | |
| TTGTGATCTTCCATTTGAGG+AGG | - | chr5_4:10643494-10643513 | None:intergenic | 40.0% | |
| ! | CCATTCTTTCGCGATTTTCT+CGG | - | chr5_4:10643562-10643581 | None:intergenic | 40.0% |
| CGAGAAAATCGCGAAAGAAT+GGG | + | chr5_4:10643560-10643579 | Msa0836930:CDS | 40.0% | |
| TCGCGAAAGAATGGGAAAAT+TGG | + | chr5_4:10643568-10643587 | Msa0836930:CDS | 40.0% | |
| CGCGAAAGAATGGGAAAATT+GGG | + | chr5_4:10643569-10643588 | Msa0836930:CDS | 40.0% | |
| TGAGAGAAACATGGGATTTG+GGG | - | chr5_4:10643658-10643677 | None:intergenic | 40.0% | |
| GTTGAGAGAAACATGGGATT+TGG | - | chr5_4:10643660-10643679 | None:intergenic | 40.0% | |
| !! | AGATGGGTTGAGAGAAACAT+GGG | - | chr5_4:10643666-10643685 | None:intergenic | 40.0% |
| !! | AAGATGGGTTGAGAGAAACA+TGG | - | chr5_4:10643667-10643686 | None:intergenic | 40.0% |
| ! | AACTACACGTGGTGGAAATA+CGG | + | chr5_4:10643817-10643836 | Msa0836930:CDS | 40.0% |
| ATACGGTCGTTATCAGATCA+AGG | + | chr5_4:10643834-10643853 | Msa0836930:CDS | 40.0% | |
| TACGGTCGTTATCAGATCAA+GGG | + | chr5_4:10643835-10643854 | Msa0836930:CDS | 40.0% | |
| AATTTGGCTAAAGCTGAAGC+TGG | - | chr5_4:10644009-10644028 | None:intergenic | 40.0% | |
| ! | CTTTCAACCGATTCATGACT+GGG | - | chr5_4:10644431-10644450 | None:intergenic | 40.0% |
| ! | ACTTTCAACCGATTCATGAC+TGG | - | chr5_4:10644432-10644451 | None:intergenic | 40.0% |
| AGTCATGAATCGGTTGAAAG+TGG | + | chr5_4:10644431-10644450 | Msa0836930:intron | 40.0% | |
| GTCATGAATCGGTTGAAAGT+GGG | + | chr5_4:10644432-10644451 | Msa0836930:intron | 40.0% | |
| GAAAGTGGGTGGATAAACTT+TGG | + | chr5_4:10644446-10644465 | Msa0836930:intron | 40.0% | |
| TGGTCATCGTAACGTACAAT+GGG | + | chr5_4:10644830-10644849 | Msa0836930:CDS | 40.0% | |
| CCGAGAAAATCGCGAAAGAA+TGG | + | chr5_4:10643559-10643578 | Msa0836930:CDS | 45.0% | |
| TGAAGGTGGCTTAGGTTTGA+GGG | - | chr5_4:10643615-10643634 | None:intergenic | 45.0% | |
| ! | GGATTTGGGGTTCTTGGAAA+CGG | - | chr5_4:10643645-10643664 | None:intergenic | 45.0% |
| ! | AACATGGGATTTGGGGTTCT+TGG | - | chr5_4:10643651-10643670 | None:intergenic | 45.0% |
| ACCTTGCAGATCGACAAGAT+GGG | - | chr5_4:10643682-10643701 | None:intergenic | 45.0% | |
| AACCTTGCAGATCGACAAGA+TGG | - | chr5_4:10643683-10643702 | None:intergenic | 45.0% | |
| CTTCATCTAACTACACGTGG+TGG | + | chr5_4:10643809-10643828 | Msa0836930:CDS | 45.0% | |
| ATCAGATCAAGGGCTCAACA+AGG | + | chr5_4:10643845-10643864 | Msa0836930:CDS | 45.0% | |
| ATGAATCGGTTGAAAGTGGG+TGG | + | chr5_4:10644435-10644454 | Msa0836930:intron | 45.0% | |
| GCAATTCACCATGCTACACT+TGG | - | chr5_4:10644767-10644786 | None:intergenic | 45.0% | |
| GTGGTCATCGTAACGTACAA+TGG | + | chr5_4:10644829-10644848 | Msa0836930:CDS | 45.0% | |
| GGTCATCGTAACGTACAATG+GGG | + | chr5_4:10644831-10644850 | Msa0836930:CDS | 45.0% | |
| CCGAGAAAATCGCGAAAGAA+TGG | + | chr5_4:10643559-10643578 | Msa0836930:CDS | 45.0% | |
| TGAAGGTGGCTTAGGTTTGA+GGG | - | chr5_4:10643615-10643634 | None:intergenic | 45.0% | |
| ! | GGATTTGGGGTTCTTGGAAA+CGG | - | chr5_4:10643645-10643664 | None:intergenic | 45.0% |
| ! | AACATGGGATTTGGGGTTCT+TGG | - | chr5_4:10643651-10643670 | None:intergenic | 45.0% |
| ACCTTGCAGATCGACAAGAT+GGG | - | chr5_4:10643682-10643701 | None:intergenic | 45.0% | |
| AACCTTGCAGATCGACAAGA+TGG | - | chr5_4:10643683-10643702 | None:intergenic | 45.0% | |
| CTTCATCTAACTACACGTGG+TGG | + | chr5_4:10643809-10643828 | Msa0836930:CDS | 45.0% | |
| ATCAGATCAAGGGCTCAACA+AGG | + | chr5_4:10643845-10643864 | Msa0836930:CDS | 45.0% | |
| ATGAATCGGTTGAAAGTGGG+TGG | + | chr5_4:10644435-10644454 | Msa0836930:intron | 45.0% | |
| GCAATTCACCATGCTACACT+TGG | - | chr5_4:10644767-10644786 | None:intergenic | 45.0% | |
| GTGGTCATCGTAACGTACAA+TGG | + | chr5_4:10644829-10644848 | Msa0836930:CDS | 45.0% | |
| GGTCATCGTAACGTACAATG+GGG | + | chr5_4:10644831-10644850 | Msa0836930:CDS | 45.0% | |
| GTGAAGGTGGCTTAGGTTTG+AGG | - | chr5_4:10643616-10643635 | None:intergenic | 50.0% | |
| TTGGAAACGGTTGGACGTGA+AGG | - | chr5_4:10643632-10643651 | None:intergenic | 50.0% | |
| TTGGGGTTCTTGGAAACGGT+TGG | - | chr5_4:10643641-10643660 | None:intergenic | 50.0% | |
| ACCCATCTTGTCGATCTGCA+AGG | + | chr5_4:10643678-10643697 | Msa0836930:intron | 50.0% | |
| GATCCTCGTATTTCCTCGCT+GGG | - | chr5_4:10644789-10644808 | None:intergenic | 50.0% | |
| TCGTGCACGAGATGATCCAA+CGG | + | chr5_4:10644807-10644826 | Msa0836930:CDS | 50.0% | |
| TACGTTACGATGACCACCGT+TGG | - | chr5_4:10644826-10644845 | None:intergenic | 50.0% | |
| GTGAAGGTGGCTTAGGTTTG+AGG | - | chr5_4:10643616-10643635 | None:intergenic | 50.0% | |
| TTGGAAACGGTTGGACGTGA+AGG | - | chr5_4:10643632-10643651 | None:intergenic | 50.0% | |
| TTGGGGTTCTTGGAAACGGT+TGG | - | chr5_4:10643641-10643660 | None:intergenic | 50.0% | |
| ACCCATCTTGTCGATCTGCA+AGG | + | chr5_4:10643678-10643697 | Msa0836930:intron | 50.0% | |
| GATCCTCGTATTTCCTCGCT+GGG | - | chr5_4:10644789-10644808 | None:intergenic | 50.0% | |
| TCGTGCACGAGATGATCCAA+CGG | + | chr5_4:10644807-10644826 | Msa0836930:CDS | 50.0% | |
| TACGTTACGATGACCACCGT+TGG | - | chr5_4:10644826-10644845 | None:intergenic | 50.0% | |
| CGACTTCGCTTTCGCAGAGT+AGG | - | chr5_4:10643452-10643471 | None:intergenic | 55.0% | |
| GTTGGACGTGAAGGTGGCTT+AGG | - | chr5_4:10643623-10643642 | None:intergenic | 55.0% | |
| GAAACGGTTGGACGTGAAGG+TGG | - | chr5_4:10643629-10643648 | None:intergenic | 55.0% | |
| TTGCCCAGCGAGGAAATACG+AGG | + | chr5_4:10644783-10644802 | Msa0836930:CDS | 55.0% | |
| CGATCCTCGTATTTCCTCGC+TGG | - | chr5_4:10644790-10644809 | None:intergenic | 55.0% | |
| TGCACGAGATGATCCAACGG+TGG | + | chr5_4:10644810-10644829 | Msa0836930:CDS | 55.0% | |
| CGACTTCGCTTTCGCAGAGT+AGG | - | chr5_4:10643452-10643471 | None:intergenic | 55.0% | |
| GTTGGACGTGAAGGTGGCTT+AGG | - | chr5_4:10643623-10643642 | None:intergenic | 55.0% | |
| GAAACGGTTGGACGTGAAGG+TGG | - | chr5_4:10643629-10643648 | None:intergenic | 55.0% | |
| TTGCCCAGCGAGGAAATACG+AGG | + | chr5_4:10644783-10644802 | Msa0836930:CDS | 55.0% | |
| CGATCCTCGTATTTCCTCGC+TGG | - | chr5_4:10644790-10644809 | None:intergenic | 55.0% | |
| TGCACGAGATGATCCAACGG+TGG | + | chr5_4:10644810-10644829 | Msa0836930:CDS | 55.0% | |
| GCATGGTGAATTGCCCAGCG+AGG | + | chr5_4:10644773-10644792 | Msa0836930:CDS | 60.0% | |
| GCATGGTGAATTGCCCAGCG+AGG | + | chr5_4:10644773-10644792 | Msa0836930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 10643446 | 10644876 | 10643446 | ID=Msa0836930;Name=Msa0836930 |
| chr5_4 | mRNA | 10643446 | 10644876 | 10643446 | ID=Msa0836930-mRNA-1;Parent=Msa0836930;Name=Msa0836930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|169 |
| chr5_4 | exon | 10643446 | 10643667 | 10643446 | ID=Msa0836930-mRNA-1:exon:4680;Parent=Msa0836930-mRNA-1 |
| chr5_4 | exon | 10643700 | 10643866 | 10643700 | ID=Msa0836930-mRNA-1:exon:4681;Parent=Msa0836930-mRNA-1 |
| chr5_4 | exon | 10644756 | 10644876 | 10644756 | ID=Msa0836930-mRNA-1:exon:4682;Parent=Msa0836930-mRNA-1 |
| chr5_4 | CDS | 10643446 | 10643667 | 10643446 | ID=Msa0836930-mRNA-1:cds;Parent=Msa0836930-mRNA-1 |
| chr5_4 | CDS | 10643700 | 10643866 | 10643700 | ID=Msa0836930-mRNA-1:cds;Parent=Msa0836930-mRNA-1 |
| chr5_4 | CDS | 10644756 | 10644876 | 10644756 | ID=Msa0836930-mRNA-1:cds;Parent=Msa0836930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
