Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837150 | XP_039685680.1 | 84.731 | 799 | 102 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1387 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837150 | sp|Q9SZL8|FRS5_ARATH | 27.769 | 641 | 383 | 14 | 32 | 665 | 70 | 637 | 2.32e-68 | 244 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837150 | D3YBB9 | 76.208 | 807 | 175 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1277 |
Gene ID | Type | Classification |
---|---|---|
Msa0837150 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837150 | MtrunA17_Chr3g0088371 | 82.609 | 184 | 29 | 1 | 618 | 798 | 1 | 184 | 4.28e-102 | 313 |
Msa0837150 | MtrunA17_Chr2g0324011 | 30.551 | 635 | 365 | 12 | 36 | 665 | 8 | 571 | 5.92e-100 | 322 |
Msa0837150 | MtrunA17_Chr3g0082121 | 31.548 | 691 | 385 | 17 | 41 | 727 | 49 | 655 | 2.06e-99 | 323 |
Msa0837150 | MtrunA17_Chr1g0202341 | 29.449 | 635 | 367 | 17 | 34 | 662 | 50 | 609 | 1.17e-78 | 267 |
Msa0837150 | MtrunA17_Chr8g0363841 | 28.617 | 629 | 376 | 13 | 40 | 665 | 22 | 580 | 1.01e-73 | 253 |
Msa0837150 | MtrunA17_Chr1g0203721 | 25.897 | 780 | 453 | 20 | 1 | 739 | 16 | 711 | 1.12e-71 | 252 |
Msa0837150 | MtrunA17_Chr5g0448761 | 25.177 | 707 | 450 | 14 | 31 | 728 | 56 | 692 | 3.50e-67 | 238 |
Msa0837150 | MtrunA17_Chr2g0296781 | 27.541 | 679 | 406 | 20 | 39 | 708 | 1 | 602 | 4.41e-67 | 236 |
Msa0837150 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 6.24e-65 | 231 |
Msa0837150 | MtrunA17_Chr6g0477261 | 29.222 | 527 | 315 | 14 | 180 | 699 | 7 | 482 | 1.17e-63 | 225 |
Msa0837150 | MtrunA17_Chr1g0164591 | 35.000 | 320 | 193 | 4 | 131 | 448 | 1 | 307 | 1.65e-61 | 210 |
Msa0837150 | MtrunA17_Chr2g0287651 | 25.596 | 629 | 388 | 13 | 39 | 662 | 79 | 632 | 1.78e-59 | 217 |
Msa0837150 | MtrunA17_Chr5g0441581 | 24.835 | 757 | 461 | 21 | 32 | 773 | 26 | 689 | 8.53e-58 | 209 |
Msa0837150 | MtrunA17_Chr5g0440451 | 24.153 | 708 | 430 | 16 | 34 | 721 | 42 | 662 | 1.37e-54 | 203 |
Msa0837150 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 4.17e-54 | 196 |
Msa0837150 | MtrunA17_Chr1g0207551 | 24.821 | 697 | 430 | 17 | 31 | 718 | 30 | 641 | 7.29e-54 | 200 |
Msa0837150 | MtrunA17_Chr2g0329031 | 25.776 | 644 | 382 | 18 | 23 | 658 | 2 | 557 | 2.10e-53 | 198 |
Msa0837150 | MtrunA17_Chr7g0258861 | 35.621 | 306 | 173 | 6 | 36 | 336 | 8 | 294 | 7.52e-53 | 186 |
Msa0837150 | MtrunA17_Chr1g0198761 | 26.994 | 652 | 380 | 19 | 26 | 660 | 38 | 610 | 7.55e-52 | 193 |
Msa0837150 | MtrunA17_Chr3g0118611 | 27.435 | 503 | 305 | 10 | 221 | 719 | 111 | 557 | 4.62e-51 | 191 |
Msa0837150 | MtrunA17_Chr1g0196541 | 24.721 | 627 | 398 | 16 | 39 | 662 | 1 | 556 | 4.77e-51 | 191 |
Msa0837150 | MtrunA17_Chr3g0080351 | 23.862 | 725 | 448 | 15 | 34 | 752 | 75 | 701 | 3.06e-50 | 190 |
Msa0837150 | MtrunA17_Chr2g0287061 | 23.916 | 669 | 378 | 19 | 41 | 694 | 189 | 741 | 7.54e-47 | 179 |
Msa0837150 | MtrunA17_Chr2g0290391 | 25.857 | 642 | 373 | 19 | 38 | 660 | 54 | 611 | 2.91e-46 | 176 |
Msa0837150 | MtrunA17_Chr1g0203051 | 22.203 | 590 | 390 | 8 | 50 | 637 | 94 | 616 | 1.23e-45 | 174 |
Msa0837150 | MtrunA17_Chr2g0276841 | 25.827 | 635 | 375 | 21 | 49 | 669 | 84 | 636 | 6.22e-44 | 169 |
Msa0837150 | MtrunA17_Chr5g0448511 | 25.442 | 452 | 283 | 10 | 216 | 665 | 1 | 400 | 5.28e-43 | 164 |
Msa0837150 | MtrunA17_Chr2g0291591 | 25.956 | 497 | 316 | 13 | 16 | 499 | 44 | 501 | 8.61e-42 | 161 |
Msa0837150 | MtrunA17_Chr5g0431001 | 27.938 | 451 | 280 | 12 | 40 | 473 | 66 | 488 | 3.04e-41 | 158 |
Msa0837150 | MtrunA17_Chr2g0291581 | 23.923 | 627 | 396 | 14 | 38 | 662 | 74 | 621 | 1.04e-40 | 159 |
Msa0837150 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.35e-40 | 143 |
Msa0837150 | MtrunA17_Chr2g0294841 | 26.441 | 503 | 317 | 15 | 3 | 482 | 7 | 479 | 2.05e-34 | 140 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0837150 | AT4G38180.1 | 27.769 | 641 | 383 | 14 | 32 | 665 | 70 | 637 | 2.35e-69 | 244 |
Msa0837150 | AT4G15090.1 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 5.38e-59 | 216 |
Msa0837150 | AT4G15090.5 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 5.38e-59 | 216 |
Msa0837150 | AT4G15090.3 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 5.38e-59 | 216 |
Msa0837150 | AT4G15090.2 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 5.38e-59 | 216 |
Msa0837150 | AT4G15090.4 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 5.38e-59 | 216 |
Msa0837150 | AT2G27110.2 | 24.930 | 714 | 424 | 19 | 10 | 719 | 29 | 634 | 1.73e-52 | 197 |
Msa0837150 | AT2G27110.1 | 24.930 | 714 | 424 | 19 | 10 | 719 | 29 | 634 | 1.73e-52 | 197 |
Msa0837150 | AT2G27110.3 | 27.112 | 509 | 314 | 11 | 213 | 719 | 36 | 489 | 7.13e-52 | 193 |
Msa0837150 | AT3G06250.2 | 24.961 | 633 | 352 | 16 | 34 | 661 | 189 | 703 | 5.52e-51 | 191 |
Msa0837150 | AT3G06250.1 | 24.961 | 633 | 352 | 16 | 34 | 661 | 189 | 703 | 5.52e-51 | 191 |
Msa0837150 | AT3G06250.3 | 24.961 | 633 | 352 | 16 | 34 | 661 | 189 | 703 | 5.52e-51 | 191 |
Msa0837150 | AT1G76320.3 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 6.56e-50 | 187 |
Msa0837150 | AT1G76320.1 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 2.00e-49 | 186 |
Msa0837150 | AT1G76320.4 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 2.00e-49 | 186 |
Msa0837150 | AT1G76320.2 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 2.28e-49 | 186 |
Msa0837150 | AT3G22170.2 | 22.603 | 730 | 448 | 17 | 34 | 753 | 69 | 691 | 5.09e-49 | 186 |
Msa0837150 | AT3G22170.1 | 22.603 | 730 | 448 | 17 | 34 | 753 | 69 | 691 | 5.09e-49 | 186 |
Msa0837150 | AT5G18960.2 | 24.575 | 647 | 360 | 18 | 24 | 661 | 200 | 727 | 3.13e-45 | 174 |
Msa0837150 | AT5G18960.1 | 24.575 | 647 | 360 | 18 | 24 | 661 | 200 | 727 | 3.13e-45 | 174 |
Msa0837150 | AT4G38170.1 | 24.324 | 481 | 296 | 13 | 235 | 703 | 24 | 448 | 1.18e-42 | 164 |
Msa0837150 | AT1G10240.2 | 24.559 | 623 | 378 | 19 | 49 | 659 | 62 | 604 | 1.08e-40 | 160 |
Msa0837150 | AT1G10240.1 | 24.559 | 623 | 378 | 19 | 49 | 659 | 62 | 604 | 1.08e-40 | 160 |
Msa0837150 | AT5G28530.1 | 23.944 | 639 | 389 | 17 | 40 | 660 | 60 | 619 | 1.90e-40 | 159 |
Msa0837150 | AT5G28530.3 | 23.787 | 639 | 386 | 18 | 40 | 660 | 60 | 615 | 1.22e-39 | 157 |
Msa0837150 | AT5G28530.2 | 23.787 | 639 | 386 | 18 | 40 | 660 | 60 | 615 | 1.22e-39 | 157 |
Msa0837150 | AT2G32250.5 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.85e-39 | 157 |
Msa0837150 | AT2G32250.2 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.52e-39 | 157 |
Msa0837150 | AT2G32250.4 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.52e-39 | 157 |
Msa0837150 | AT2G32250.6 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 3.18e-39 | 156 |
Msa0837150 | AT2G32250.1 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 3.18e-39 | 156 |
Msa0837150 | AT2G32250.3 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 3.18e-39 | 156 |
Msa0837150 | AT2G32250.7 | 23.479 | 707 | 409 | 17 | 41 | 743 | 3 | 581 | 1.55e-38 | 154 |
Msa0837150 | AT2G32250.8 | 23.605 | 699 | 400 | 18 | 50 | 743 | 12 | 581 | 1.71e-38 | 154 |
Msa0837150 | AT1G80010.1 | 23.404 | 658 | 371 | 24 | 41 | 662 | 101 | 661 | 4.74e-35 | 143 |
Msa0837150 | AT1G52520.1 | 21.920 | 625 | 408 | 16 | 41 | 662 | 91 | 638 | 3.12e-32 | 134 |
Msa0837150 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.95e-27 | 118 |
Msa0837150 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.34e-12 | 71.2 |
Msa0837150 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.05e-27 | 119 |
Msa0837150 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.46e-12 | 71.2 |
Msa0837150 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 3.14e-27 | 119 |
Msa0837150 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.52e-12 | 71.2 |
Msa0837150 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.74e-27 | 118 |
Msa0837150 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.49e-12 | 71.2 |
Msa0837150 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.74e-27 | 118 |
Msa0837150 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.49e-12 | 71.2 |
Msa0837150 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 4.37e-27 | 118 |
Msa0837150 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.43e-12 | 71.2 |
Msa0837150 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 4.37e-27 | 118 |
Msa0837150 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.43e-12 | 71.2 |
Msa0837150 | AT5G28530.4 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.20e-22 | 103 |
Msa0837150 | AT5G28530.5 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 1.08e-21 | 100 |
Find 122 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 5_4:+10954934 | Msa0837150:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5_4:+10954625 | Msa0837150:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 5_4:-10955760 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5_4:+10954892 | Msa0837150:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5_4:+10954344 | Msa0837150:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5_4:+10954377 | Msa0837150:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5_4:-10954471 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 5_4:-10955754 | None:intergenic |
TTTGCTTCTTCTGAGCTATA+AGG | 0.312443 | 5_4:-10955822 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5_4:+10954666 | Msa0837150:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5_4:+10955606 | Msa0837150:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5_4:-10954489 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5_4:-10953891 | None:intergenic |
TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 5_4:+10956003 | Msa0837150:three_prime_UTR |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 5_4:+10955189 | Msa0837150:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5_4:+10954766 | Msa0837150:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5_4:+10955598 | Msa0837150:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 5_4:+10953898 | Msa0837150:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5_4:+10953890 | Msa0837150:CDS |
TTTCAATTTATCATATCTAA+TGG | 0.390380 | 5_4:+10952978 | None:intergenic |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5_4:+10954765 | Msa0837150:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 5_4:-10955482 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5_4:-10953361 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5_4:+10955746 | Msa0837150:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5_4:-10955736 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 5_4:+10955066 | Msa0837150:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5_4:+10955631 | Msa0837150:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5_4:+10953132 | Msa0837150:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5_4:+10955314 | Msa0837150:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5_4:-10955237 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5_4:+10953203 | Msa0837150:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5_4:-10955238 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5_4:+10953538 | Msa0837150:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5_4:+10953420 | Msa0837150:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5_4:-10954482 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5_4:+10953403 | Msa0837150:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5_4:-10955415 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 5_4:+10953286 | Msa0837150:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5_4:+10953568 | Msa0837150:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5_4:+10953057 | Msa0837150:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5_4:+10954556 | Msa0837150:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5_4:+10954720 | Msa0837150:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5_4:+10955315 | Msa0837150:CDS |
AATTCTTGATTGTTATGCAT+TGG | 0.467731 | 5_4:+10955984 | Msa0837150:three_prime_UTR |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5_4:+10953252 | Msa0837150:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 5_4:+10955272 | Msa0837150:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5_4:+10953613 | Msa0837150:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5_4:-10955068 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5_4:-10953397 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 5_4:+10953190 | Msa0837150:CDS |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 5_4:+10955707 | Msa0837150:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5_4:+10953681 | Msa0837150:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 5_4:-10953508 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5_4:+10953246 | Msa0837150:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5_4:+10955082 | Msa0837150:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5_4:-10954357 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5_4:+10954667 | Msa0837150:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5_4:+10953694 | Msa0837150:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5_4:+10954906 | Msa0837150:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5_4:-10954986 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5_4:+10953600 | Msa0837150:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5_4:-10953786 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 5_4:+10955706 | Msa0837150:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 5_4:-10953496 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5_4:+10954753 | Msa0837150:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5_4:+10955251 | Msa0837150:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5_4:-10953652 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 5_4:+10954925 | Msa0837150:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5_4:+10954771 | Msa0837150:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 5_4:+10953456 | Msa0837150:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5_4:-10955231 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5_4:-10954874 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 5_4:+10953297 | Msa0837150:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5_4:+10955252 | Msa0837150:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 5_4:-10955063 | None:intergenic |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 5_4:+10955271 | Msa0837150:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5_4:-10954869 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5_4:+10955083 | Msa0837150:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5_4:+10953298 | Msa0837150:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 5_4:+10953122 | Msa0837150:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5_4:-10954502 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 5_4:+10955472 | Msa0837150:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5_4:+10953748 | Msa0837150:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5_4:+10953081 | Msa0837150:CDS |
GAAGCAAAAGAAAGATGATG+AGG | 0.568482 | 5_4:+10955837 | Msa0837150:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5_4:+10953616 | Msa0837150:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5_4:+10955558 | Msa0837150:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 5_4:+10953455 | Msa0837150:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5_4:-10954987 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5_4:-10955718 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5_4:-10955008 | None:intergenic |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 5_4:+10953046 | Msa0837150:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5_4:+10953607 | Msa0837150:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5_4:+10955599 | Msa0837150:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 5_4:+10954488 | Msa0837150:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5_4:+10955594 | Msa0837150:CDS |
GAGGCTTTAACAAATTAAGC+GGG | 0.594536 | 5_4:+10955856 | Msa0837150:exon |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 5_4:+10955221 | Msa0837150:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5_4:-10955674 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5_4:+10953687 | Msa0837150:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5_4:+10953601 | Msa0837150:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5_4:+10953690 | Msa0837150:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5_4:+10955561 | Msa0837150:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5_4:+10954984 | Msa0837150:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5_4:+10955069 | Msa0837150:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 5_4:-10955506 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5_4:-10953346 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5_4:-10954722 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5_4:+10953621 | Msa0837150:CDS |
TGAGGCTTTAACAAATTAAG+CGG | 0.628414 | 5_4:+10955855 | Msa0837150:exon |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5_4:-10955236 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5_4:+10954557 | Msa0837150:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 5_4:-10955479 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5_4:+10954907 | Msa0837150:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5_4:-10955457 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5_4:-10955028 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5_4:+10955583 | Msa0837150:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5_4:-10955333 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 5_4:+10954484 | Msa0837150:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5_4:+10955316 | Msa0837150:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5_4:+10955167 | Msa0837150:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5_4:+10955168 | Msa0837150:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr5_4:10955886-10955905 | Msa0837150:three_prime_UTR | 15.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr5_4:10953190-10953209 | Msa0837150:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr5_4:10953246-10953265 | Msa0837150:CDS | 20.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr5_4:10953455-10953474 | Msa0837150:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr5_4:10953456-10953475 | Msa0837150:CDS | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr5_4:10954045-10954064 | Msa0837150:intron | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr5_4:10954073-10954092 | Msa0837150:intron | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr5_4:10954695-10954714 | Msa0837150:CDS | 20.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr5_4:10953081-10953100 | Msa0837150:CDS | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | + | chr5_4:10953122-10953141 | Msa0837150:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5_4:10953242-10953261 | None:intergenic | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr5_4:10953252-10953271 | Msa0837150:CDS | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr5_4:10953568-10953587 | Msa0837150:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr5_4:10953890-10953909 | Msa0837150:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr5_4:10953916-10953935 | None:intergenic | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr5_4:10953963-10953982 | Msa0837150:intron | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5_4:10954065-10954084 | Msa0837150:intron | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr5_4:10954072-10954091 | Msa0837150:intron | 25.0% |
! | TTTCTATTTACACAACACAA+TGG | + | chr5_4:10954280-10954299 | Msa0837150:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5_4:10954321-10954340 | Msa0837150:intron | 25.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr5_4:10954533-10954552 | None:intergenic | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr5_4:10954625-10954644 | Msa0837150:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr5_4:10954699-10954718 | Msa0837150:CDS | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr5_4:10954892-10954911 | Msa0837150:CDS | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr5_4:10955031-10955050 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr5_4:10955066-10955085 | None:intergenic | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr5_4:10955066-10955085 | Msa0837150:CDS | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr5_4:10955167-10955186 | Msa0837150:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr5_4:10955168-10955187 | Msa0837150:CDS | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr5_4:10955917-10955936 | Msa0837150:three_prime_UTR | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr5_4:10955984-10956003 | Msa0837150:three_prime_UTR | 25.0% |
ATATTAACTTCATCTGAGAG+TGG | + | chr5_4:10953046-10953065 | Msa0837150:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr5_4:10953132-10953151 | Msa0837150:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr5_4:10953286-10953305 | Msa0837150:CDS | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr5_4:10953297-10953316 | Msa0837150:CDS | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr5_4:10953298-10953317 | Msa0837150:CDS | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr5_4:10953387-10953406 | Msa0837150:CDS | 30.0% | |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr5_4:10953420-10953439 | Msa0837150:CDS | 30.0% |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr5_4:10953499-10953518 | None:intergenic | 30.0% |
AGAACATCTTATGAAGTGAT+GGG | + | chr5_4:10953601-10953620 | Msa0837150:CDS | 30.0% | |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5_4:10953645-10953664 | Msa0837150:CDS | 30.0% |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr5_4:10953655-10953674 | None:intergenic | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr5_4:10953769-10953788 | None:intergenic | 30.0% | |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr5_4:10953803-10953822 | Msa0837150:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr5_4:10953804-10953823 | Msa0837150:CDS | 30.0% |
GCCGATATTTATTGTTTGTT+CGG | - | chr5_4:10953894-10953913 | None:intergenic | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr5_4:10953898-10953917 | Msa0837150:CDS | 30.0% | |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5_4:10953977-10953996 | Msa0837150:intron | 30.0% |
CTGGTATATGTGTGTTAATT+TGG | + | chr5_4:10954002-10954021 | Msa0837150:intron | 30.0% | |
AAACACATATGATCTTTCCA+TGG | - | chr5_4:10954136-10954155 | None:intergenic | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr5_4:10954360-10954379 | None:intergenic | 30.0% | |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr5_4:10954474-10954493 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr5_4:10954524-10954543 | Msa0837150:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr5_4:10954536-10954555 | Msa0837150:CDS | 30.0% |
GAGAATGCAAAGAAAAATCT+CGG | + | chr5_4:10954581-10954600 | Msa0837150:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr5_4:10954666-10954685 | Msa0837150:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr5_4:10954667-10954686 | Msa0837150:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr5_4:10954877-10954896 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr5_4:10955011-10955030 | None:intergenic | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr5_4:10955071-10955090 | None:intergenic | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr5_4:10955069-10955088 | Msa0837150:CDS | 30.0% | |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr5_4:10955126-10955145 | Msa0837150:CDS | 30.0% |
ATTATGATCTTCAAACCTTG+GGG | - | chr5_4:10955239-10955258 | None:intergenic | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr5_4:10955240-10955259 | None:intergenic | 30.0% | |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr5_4:10955251-10955270 | Msa0837150:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr5_4:10955252-10955271 | Msa0837150:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr5_4:10955348-10955367 | Msa0837150:CDS | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr5_4:10955351-10955370 | Msa0837150:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr5_4:10955416-10955435 | Msa0837150:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | + | chr5_4:10955583-10955602 | Msa0837150:CDS | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr5_4:10955631-10955650 | Msa0837150:CDS | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr5_4:10955739-10955758 | None:intergenic | 30.0% |
AAGAAAGACCAAATCCAATT+AGG | + | chr5_4:10955746-10955765 | Msa0837150:CDS | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr5_4:10955757-10955776 | None:intergenic | 30.0% | |
! | TGAGGCTTTAACAAATTAAG+CGG | + | chr5_4:10955855-10955874 | Msa0837150:exon | 30.0% |
!!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr5_4:10953018-10953037 | Msa0837150:exon | 35.0% |
ATAACACTGGATTCTCTGTT+AGG | + | chr5_4:10953203-10953222 | Msa0837150:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr5_4:10953323-10953342 | Msa0837150:CDS | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr5_4:10953364-10953383 | None:intergenic | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr5_4:10953381-10953400 | Msa0837150:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr5_4:10953386-10953405 | Msa0837150:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr5_4:10953538-10953557 | Msa0837150:CDS | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr5_4:10953600-10953619 | Msa0837150:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr5_4:10953681-10953700 | Msa0837150:CDS | 35.0% | |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr5_4:10953983-10954002 | Msa0837150:intron | 35.0% |
CATAAATTCCAAGGCAAGAT+AGG | - | chr5_4:10954103-10954122 | None:intergenic | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | - | chr5_4:10954112-10954131 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5_4:10954377-10954396 | Msa0837150:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5_4:10954420-10954439 | Msa0837150:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr5_4:10954549-10954568 | Msa0837150:CDS | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr5_4:10954709-10954728 | Msa0837150:CDS | 35.0% |
CTCATTCAAATCGTATGCAT+TGG | + | chr5_4:10954753-10954772 | Msa0837150:CDS | 35.0% | |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr5_4:10954766-10954785 | Msa0837150:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5_4:10954836-10954855 | Msa0837150:CDS | 35.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr5_4:10954906-10954925 | Msa0837150:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr5_4:10954907-10954926 | Msa0837150:CDS | 35.0% | |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr5_4:10955189-10955208 | Msa0837150:CDS | 35.0% |
CGATTATGATCTTCAAACCT+TGG | - | chr5_4:10955241-10955260 | None:intergenic | 35.0% | |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr5_4:10955358-10955377 | Msa0837150:CDS | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr5_4:10955418-10955437 | None:intergenic | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr5_4:10955419-10955438 | Msa0837150:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr5_4:10955685-10955704 | None:intergenic | 35.0% |
TTTGCTTCTTCTGAGCTATA+AGG | - | chr5_4:10955825-10955844 | None:intergenic | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr5_4:10955837-10955856 | Msa0837150:CDS | 35.0% | |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr5_4:10955856-10955875 | Msa0837150:exon | 35.0% |
ATCTGAGAGTGGACAATTGA+CGG | + | chr5_4:10953057-10953076 | Msa0837150:CDS | 40.0% | |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5_4:10953337-10953356 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr5_4:10953607-10953626 | Msa0837150:CDS | 40.0% |
TCCATCTGCCCAAAAAATAC+TGG | - | chr5_4:10953815-10953834 | None:intergenic | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr5_4:10954116-10954135 | Msa0837150:intron | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr5_4:10954226-10954245 | Msa0837150:intron | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr5_4:10954230-10954249 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr5_4:10954344-10954363 | Msa0837150:intron | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr5_4:10954485-10954504 | None:intergenic | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr5_4:10954484-10954503 | Msa0837150:CDS | 40.0% | |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr5_4:10954765-10954784 | Msa0837150:CDS | 40.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr5_4:10954872-10954891 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr5_4:10954934-10954953 | Msa0837150:CDS | 40.0% |
TATGAGGAGGACACAACAAA+AGG | + | chr5_4:10955082-10955101 | Msa0837150:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr5_4:10955083-10955102 | Msa0837150:CDS | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr5_4:10955221-10955240 | Msa0837150:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr5_4:10955314-10955333 | Msa0837150:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr5_4:10955315-10955334 | Msa0837150:CDS | 40.0% | |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr5_4:10955361-10955380 | Msa0837150:CDS | 40.0% |
GATTTCAGCTTATCGACAGA+CGG | - | chr5_4:10955460-10955479 | None:intergenic | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr5_4:10955472-10955491 | Msa0837150:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr5_4:10955482-10955501 | None:intergenic | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr5_4:10955485-10955504 | None:intergenic | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | + | chr5_4:10955594-10955613 | Msa0837150:CDS | 40.0% | |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr5_4:10955677-10955696 | None:intergenic | 40.0% |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr5_4:10955763-10955782 | None:intergenic | 40.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr5_4:10953349-10953368 | None:intergenic | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr5_4:10953391-10953410 | Msa0837150:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr5_4:10953400-10953419 | None:intergenic | 45.0% | |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5_4:10953403-10953422 | Msa0837150:CDS | 45.0% |
CTCAAGTAGCACAAATGCTC+TGG | - | chr5_4:10953511-10953530 | None:intergenic | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr5_4:10953687-10953706 | Msa0837150:CDS | 45.0% | |
AACTCGTCAAAAGGAGATGG+TGG | + | chr5_4:10953690-10953709 | Msa0837150:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr5_4:10953748-10953767 | Msa0837150:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr5_4:10953789-10953808 | None:intergenic | 45.0% | |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr5_4:10953811-10953830 | Msa0837150:CDS | 45.0% |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr5_4:10954725-10954744 | None:intergenic | 45.0% | |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr5_4:10954771-10954790 | Msa0837150:CDS | 45.0% |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr5_4:10954788-10954807 | Msa0837150:CDS | 45.0% |
GAGGGATAATCATGCTGAGT+TGG | + | chr5_4:10954925-10954944 | Msa0837150:CDS | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr5_4:10954984-10955003 | Msa0837150:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr5_4:10955234-10955253 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr5_4:10955316-10955335 | Msa0837150:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr5_4:10955336-10955355 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr5_4:10955509-10955528 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr5_4:10955606-10955625 | Msa0837150:CDS | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | + | chr5_4:10955707-10955726 | Msa0837150:CDS | 45.0% | |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr5_4:10953613-10953632 | Msa0837150:CDS | 50.0% |
TGGGTGATCCTATCTTGCCT+TGG | + | chr5_4:10954092-10954111 | Msa0837150:intron | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr5_4:10954488-10954507 | Msa0837150:CDS | 50.0% | |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr5_4:10954492-10954511 | None:intergenic | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr5_4:10954556-10954575 | Msa0837150:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr5_4:10954557-10954576 | Msa0837150:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr5_4:10954720-10954739 | Msa0837150:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr5_4:10954989-10955008 | None:intergenic | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr5_4:10955271-10955290 | Msa0837150:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr5_4:10955272-10955291 | Msa0837150:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr5_4:10955558-10955577 | Msa0837150:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr5_4:10955599-10955618 | Msa0837150:CDS | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | + | chr5_4:10955706-10955725 | Msa0837150:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr5_4:10955721-10955740 | None:intergenic | 50.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr5_4:10953616-10953635 | Msa0837150:CDS | 55.0% |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5_4:10953694-10953713 | Msa0837150:CDS | 55.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr5_4:10954505-10954524 | None:intergenic | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr5_4:10954990-10955009 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr5_4:10955598-10955617 | Msa0837150:CDS | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr5_4:10955612-10955631 | Msa0837150:CDS | 55.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr5_4:10953621-10953640 | Msa0837150:CDS | 60.0% | |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr5_4:10955561-10955580 | Msa0837150:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 10952992 | 10956025 | 10952992 | ID=Msa0837150;Name=Msa0837150 |
chr5_4 | mRNA | 10952992 | 10956025 | 10952992 | ID=Msa0837150-mRNA-1;Parent=Msa0837150;Name=Msa0837150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
chr5_4 | exon | 10952992 | 10953919 | 10952992 | ID=Msa0837150-mRNA-1:exon:4758;Parent=Msa0837150-mRNA-1 |
chr5_4 | exon | 10954354 | 10956025 | 10954354 | ID=Msa0837150-mRNA-1:exon:4759;Parent=Msa0837150-mRNA-1 |
chr5_4 | five_prime_UTR | 10952992 | 10953036 | 10952992 | ID=Msa0837150-mRNA-1:five_prime_utr;Parent=Msa0837150-mRNA-1 |
chr5_4 | CDS | 10953037 | 10953919 | 10953037 | ID=Msa0837150-mRNA-1:cds;Parent=Msa0837150-mRNA-1 |
chr5_4 | CDS | 10954354 | 10955873 | 10954354 | ID=Msa0837150-mRNA-1:cds;Parent=Msa0837150-mRNA-1 |
chr5_4 | three_prime_UTR | 10955874 | 10956025 | 10955874 | ID=Msa0837150-mRNA-1:three_prime_utr;Parent=Msa0837150-mRNA-1 |
Gene Sequence |
Protein sequence |