Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837180 | XP_003611877.2 | 97.154 | 527 | 13 | 1 | 1 | 527 | 1 | 525 | 0.0 | 1064 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837180 | sp|Q8W4F0|DAR1_ARATH | 66.905 | 559 | 146 | 6 | 1 | 526 | 1 | 553 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837180 | G7KAS2 | 97.154 | 527 | 13 | 1 | 1 | 527 | 1 | 525 | 0.0 | 1064 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0837180 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837180 | MtrunA17_Chr8g0373781 | 75.188 | 532 | 125 | 5 | 1 | 526 | 1 | 531 | 0.0 | 772 |
| Msa0837180 | MtrunA17_Chr5g0403261 | 88.798 | 366 | 10 | 1 | 1 | 335 | 1 | 366 | 0.0 | 669 |
| Msa0837180 | MtrunA17_Chr1g0154501 | 58.935 | 526 | 158 | 6 | 1 | 526 | 1 | 468 | 0.0 | 607 |
| Msa0837180 | MtrunA17_Chr5g0403301 | 85.246 | 305 | 23 | 2 | 223 | 527 | 25 | 307 | 7.18e-178 | 502 |
| Msa0837180 | MtrunA17_Chr5g0436051 | 50.947 | 528 | 201 | 6 | 1 | 526 | 144 | 615 | 3.13e-177 | 513 |
| Msa0837180 | MtrunA17_Chr3g0112601 | 56.954 | 453 | 164 | 6 | 101 | 526 | 64 | 512 | 3.35e-169 | 488 |
| Msa0837180 | MtrunA17_Chr5g0403271 | 96.795 | 156 | 3 | 1 | 372 | 527 | 1 | 154 | 3.71e-104 | 308 |
| Msa0837180 | MtrunA17_Chr5g0403291 | 76.404 | 89 | 20 | 1 | 156 | 244 | 382 | 469 | 6.16e-42 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837180 | AT4G36860.1 | 66.905 | 559 | 146 | 6 | 1 | 526 | 1 | 553 | 0.0 | 714 |
| Msa0837180 | AT4G36860.3 | 64.605 | 582 | 145 | 7 | 1 | 526 | 1 | 577 | 0.0 | 708 |
| Msa0837180 | AT1G19270.1 | 52.055 | 584 | 169 | 8 | 1 | 526 | 1 | 531 | 0.0 | 583 |
| Msa0837180 | AT1G19270.2 | 52.055 | 584 | 169 | 8 | 1 | 526 | 1 | 531 | 0.0 | 583 |
| Msa0837180 | AT4G36860.2 | 64.811 | 449 | 124 | 5 | 1 | 416 | 1 | 448 | 0.0 | 569 |
| Msa0837180 | AT2G39830.3 | 57.718 | 447 | 164 | 5 | 102 | 526 | 75 | 518 | 0.0 | 518 |
| Msa0837180 | AT2G39830.1 | 56.484 | 455 | 172 | 6 | 94 | 526 | 77 | 527 | 3.06e-180 | 517 |
| Msa0837180 | AT2G39830.2 | 56.114 | 458 | 172 | 7 | 94 | 526 | 77 | 530 | 7.85e-178 | 511 |
| Msa0837180 | AT2G39830.4 | 53.591 | 362 | 143 | 6 | 94 | 432 | 77 | 436 | 2.32e-135 | 400 |
| Msa0837180 | AT5G66620.1 | 46.667 | 480 | 229 | 9 | 47 | 519 | 181 | 640 | 1.27e-134 | 405 |
| Msa0837180 | AT5G66620.3 | 46.667 | 480 | 229 | 9 | 47 | 519 | 172 | 631 | 1.47e-134 | 404 |
| Msa0837180 | AT5G66620.4 | 46.667 | 480 | 229 | 9 | 47 | 519 | 172 | 631 | 1.47e-134 | 404 |
| Msa0837180 | AT5G66610.1 | 45.200 | 500 | 230 | 10 | 40 | 520 | 77 | 551 | 6.39e-129 | 387 |
| Msa0837180 | AT5G66610.3 | 45.952 | 457 | 205 | 8 | 66 | 520 | 8 | 424 | 7.02e-126 | 375 |
| Msa0837180 | AT5G66610.2 | 42.315 | 527 | 233 | 11 | 40 | 520 | 77 | 578 | 4.23e-123 | 373 |
| Msa0837180 | AT5G66630.1 | 48.533 | 375 | 176 | 7 | 148 | 519 | 338 | 698 | 2.03e-111 | 347 |
| Msa0837180 | AT5G66640.5 | 43.656 | 465 | 228 | 14 | 71 | 519 | 24 | 470 | 3.34e-107 | 329 |
| Msa0837180 | AT5G66640.1 | 43.929 | 453 | 221 | 13 | 81 | 519 | 5 | 438 | 1.21e-106 | 326 |
| Msa0837180 | AT5G66640.7 | 43.929 | 453 | 221 | 13 | 81 | 519 | 5 | 438 | 1.21e-106 | 326 |
| Msa0837180 | AT5G66640.4 | 43.441 | 465 | 228 | 14 | 71 | 519 | 24 | 469 | 2.25e-106 | 327 |
| Msa0837180 | AT5G17890.1 | 50.806 | 372 | 173 | 5 | 153 | 519 | 1235 | 1601 | 2.46e-104 | 343 |
| Msa0837180 | AT5G66640.3 | 50.155 | 323 | 152 | 6 | 205 | 519 | 10 | 331 | 2.38e-100 | 306 |
| Msa0837180 | AT5G66640.6 | 40.215 | 465 | 240 | 15 | 71 | 519 | 24 | 466 | 6.94e-91 | 286 |
| Msa0837180 | AT5G66640.2 | 40.000 | 465 | 240 | 15 | 71 | 519 | 24 | 465 | 3.94e-90 | 285 |
| Msa0837180 | AT5G66620.2 | 41.399 | 343 | 174 | 9 | 47 | 382 | 172 | 494 | 2.80e-77 | 252 |
Find 187 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTCCTTCTTCAATTTC+TGG | 0.060868 | 5_4:-10998163 | None:intergenic |
| AGTATAGAGCTCATCCTTTC+TGG | 0.166643 | 5_4:+10997098 | Msa0837180:CDS |
| AACATGGTGATGATAGAATT+TGG | 0.189733 | 5_4:+10994292 | Msa0837180:CDS |
| GGCTCTAATCATAGAATTTC+AGG | 0.190682 | 5_4:+10994252 | Msa0837180:CDS |
| GATTAAATGTGTGCATTCTA+AGG | 0.202129 | 5_4:-10999545 | None:intergenic |
| TCGAAGAATTTCTTCAATTC+AGG | 0.202356 | 5_4:-10993769 | None:intergenic |
| TAAAGATAAATTTCCTGTTT+TGG | 0.214243 | 5_4:-10998739 | None:intergenic |
| ATATAACATAATCTAGTAAA+AGG | 0.221696 | 5_4:-10998900 | None:intergenic |
| TCTCCCTGTAGCAGGATTTA+TGG | 0.233835 | 5_4:-10996096 | None:intergenic |
| CATGCATGGCTCAGGCTTAA+AGG | 0.237169 | 5_4:+10998031 | Msa0837180:CDS |
| TTATTGCTTCTGACAATCTT+TGG | 0.237298 | 5_4:+10999647 | Msa0837180:three_prime_UTR |
| GTCTTCCTCAAGTTGATCTT+TGG | 0.266836 | 5_4:-10994982 | None:intergenic |
| GCAGCAAGTTCCTATGCTTT+TGG | 0.277916 | 5_4:+10997447 | Msa0837180:CDS |
| TATAGAATGTGGTGAGAAAA+TGG | 0.280117 | 5_4:-10993712 | None:intergenic |
| CATCGACGGGTCAGTCTATA+AGG | 0.282747 | 5_4:-10997849 | None:intergenic |
| GTGTCTAGACTCAGCAATTA+TGG | 0.285275 | 5_4:+10997354 | Msa0837180:CDS |
| CATAAAATTCTAGTATTTCA+TGG | 0.285949 | 5_4:-10997402 | None:intergenic |
| GTCCTCTAGTTTCAGGTAAA+TGG | 0.286014 | 5_4:-10997633 | None:intergenic |
| CGGTGTCCTGCCCCTATACT+TGG | 0.286586 | 5_4:-10997804 | None:intergenic |
| AAGAAATTCTTCGAACTAAC+AGG | 0.290166 | 5_4:+10993778 | Msa0837180:five_prime_UTR |
| TACCAGGCGGTACTTAAGTA+TGG | 0.294982 | 5_4:+10998409 | Msa0837180:CDS |
| ATGAATATTTAAACTTGAAT+TGG | 0.303716 | 5_4:+10999249 | Msa0837180:three_prime_UTR |
| CAAATTCATTCATATTTCAT+TGG | 0.316172 | 5_4:+10993670 | Msa0837180:five_prime_UTR |
| CATATCAGCTTCTCAAGAAT+TGG | 0.321586 | 5_4:-10999302 | None:intergenic |
| ATCAGACTCTCCTTTCTATC+TGG | 0.340652 | 5_4:+10999196 | Msa0837180:three_prime_UTR |
| GAGAGGATGAAGGGGCTAGA+TGG | 0.342850 | 5_4:-10998552 | None:intergenic |
| ACCTCTTTCCACCAGGATTC+AGG | 0.345128 | 5_4:+10995093 | Msa0837180:CDS |
| TTAGAATCAGAGCTCTATTC+TGG | 0.345608 | 5_4:+10998208 | Msa0837180:CDS |
| TGAGAATCTCAAGGGGAATA+TGG | 0.351602 | 5_4:+10999391 | Msa0837180:three_prime_UTR |
| TCAGAGCTCTATTCTGGATC+TGG | 0.372505 | 5_4:+10998214 | Msa0837180:CDS |
| AAGCAGAGTCCTCTAGTTTC+AGG | 0.382892 | 5_4:-10997640 | None:intergenic |
| TAAGTTGCATGGGAGGGGTC+TGG | 0.385209 | 5_4:+10995822 | Msa0837180:CDS |
| AAATTCATTCATATTTCATT+GGG | 0.410265 | 5_4:+10993671 | Msa0837180:five_prime_UTR |
| TCAATTTCTGGCCTCAAGTT+GGG | 0.412121 | 5_4:-10998151 | None:intergenic |
| TTCTTGCAAACATCACATCT+TGG | 0.412310 | 5_4:-10996127 | None:intergenic |
| CTTTCAACATGGAAAAGTTC+CGG | 0.413229 | 5_4:-10998464 | None:intergenic |
| TTCAATTTCTGGCCTCAAGT+TGG | 0.417922 | 5_4:-10998152 | None:intergenic |
| ATGGAAAAGTTCCGGTCAAA+TGG | 0.421969 | 5_4:-10998456 | None:intergenic |
| CTTTAGCTCATCATAACCTC+TGG | 0.424412 | 5_4:-10999456 | None:intergenic |
| ACATGGTGATGATAGAATTT+GGG | 0.426199 | 5_4:+10994293 | Msa0837180:CDS |
| TTTGTCAATTATTTGTATGA+TGG | 0.440224 | 5_4:-10998685 | None:intergenic |
| GAAGAAGCAATCTACTATGA+TGG | 0.441709 | 5_4:+10999487 | Msa0837180:three_prime_UTR |
| CTATCAACACTCTTAACAAC+TGG | 0.445569 | 5_4:+10999091 | Msa0837180:three_prime_UTR |
| CTGAGTGCAGGATGATTTGC+CGG | 0.446222 | 5_4:+10994448 | Msa0837180:intron |
| TCTTGCAAACATCACATCTT+GGG | 0.448902 | 5_4:-10996126 | None:intergenic |
| GTGATGCTTCTCCCTGTAGC+AGG | 0.451634 | 5_4:-10996104 | None:intergenic |
| AGAGGATGAAGGGGCTAGAT+GGG | 0.455057 | 5_4:-10998551 | None:intergenic |
| TGAACATACTCTAGAACAAA+AGG | 0.455727 | 5_4:-10998774 | None:intergenic |
| TACTATGATGGGAGAAATGA+TGG | 0.457445 | 5_4:+10999499 | Msa0837180:three_prime_UTR |
| TGAAGGTTTAAATATGAAAG+TGG | 0.460205 | 5_4:+10997423 | Msa0837180:CDS |
| CTAACCTCATAATCAGTGAT+TGG | 0.460726 | 5_4:-10995881 | None:intergenic |
| CGGTCAAATGGATATGATCA+AGG | 0.464591 | 5_4:-10998444 | None:intergenic |
| GGCTGTCACTTCGCATCGAC+GGG | 0.470821 | 5_4:-10997862 | None:intergenic |
| AGATTATGTTATATTAAAAG+AGG | 0.474458 | 5_4:+10998909 | Msa0837180:three_prime_UTR |
| TCTGCCAATCACTGATTATG+AGG | 0.478761 | 5_4:+10995877 | Msa0837180:CDS |
| TATGTTTATAGATTGTTGAC+AGG | 0.479289 | 5_4:+10997983 | Msa0837180:intron |
| TTTCTCTGCAGAATCTGTGC+TGG | 0.480650 | 5_4:+10995767 | Msa0837180:intron |
| TGGTTTACAAAGTTTCTCAA+TGG | 0.483060 | 5_4:+10994231 | Msa0837180:CDS |
| GCAGATGGCAAGCATGGCAT+TGG | 0.483972 | 5_4:-10995859 | None:intergenic |
| GTGAGGTATCTGACTCAATC+TGG | 0.485020 | 5_4:-10998357 | None:intergenic |
| GCTGGATGCAATGCTGAGAT+TGG | 0.485337 | 5_4:+10995785 | Msa0837180:CDS |
| TTGTTGTAGCTGCGAAAGAA+TGG | 0.486878 | 5_4:+10997165 | Msa0837180:CDS |
| AACTTCCACTTCTTTCATGT+TGG | 0.496086 | 5_4:-10999130 | None:intergenic |
| GTATTTCATGGTAGAGAGGT+TGG | 0.496331 | 5_4:-10997390 | None:intergenic |
| TCAGATACCTCACCAGCCTA+TGG | 0.497390 | 5_4:+10998367 | Msa0837180:CDS |
| ATGAGGCCAGCTGAATTAGC+CGG | 0.498369 | 5_4:-10997073 | None:intergenic |
| CAGAGGTTATGATGAGCTAA+AGG | 0.499848 | 5_4:+10999457 | Msa0837180:three_prime_UTR |
| AGATAATGCATGCATGGCTC+AGG | 0.501774 | 5_4:+10998023 | Msa0837180:CDS |
| GTGTTCTGCATCATCGAAGA+AGG | 0.503016 | 5_4:+10998288 | Msa0837180:CDS |
| TATGAACCAATGCCTCATCT+TGG | 0.505007 | 5_4:+10998516 | Msa0837180:three_prime_UTR |
| CAGAGCTCTATTCTGGATCT+GGG | 0.507459 | 5_4:+10998215 | Msa0837180:CDS |
| TATTTGATTTGAGAGGATGA+AGG | 0.508367 | 5_4:-10998562 | None:intergenic |
| TCTCCCCACCTCTTTCCACC+AGG | 0.509167 | 5_4:+10995086 | Msa0837180:CDS |
| TGCTGTCGAGCTCATGCGTA+GGG | 0.509372 | 5_4:-10997135 | None:intergenic |
| CTTGATCATATCCATTTGAC+CGG | 0.509477 | 5_4:+10998445 | Msa0837180:CDS |
| ATTAAATGTGTGCATTCTAA+GGG | 0.511330 | 5_4:-10999544 | None:intergenic |
| CTGAAAGGGAAGAAAGTTGT+TGG | 0.513320 | 5_4:+10994527 | Msa0837180:CDS |
| ATATATAATTACCTGAATCC+TGG | 0.513713 | 5_4:-10995104 | None:intergenic |
| GATGAAGCATCCAGATAGAA+AGG | 0.514063 | 5_4:-10999206 | None:intergenic |
| TGGATTCAGATCGGGTTACC+AGG | 0.515296 | 5_4:+10998393 | Msa0837180:CDS |
| TATAACATAATCTAGTAAAA+GGG | 0.515347 | 5_4:-10998899 | None:intergenic |
| ATTCAATTAAGTTTGAGCAC+TGG | 0.516076 | 5_4:+10995023 | Msa0837180:CDS |
| ATTTGATTTGAGAGGATGAA+GGG | 0.516509 | 5_4:-10998561 | None:intergenic |
| CTTACCATAAATCCTGCTAC+AGG | 0.517147 | 5_4:+10996092 | Msa0837180:CDS |
| AATGTGTGCATTCTAAGGGT+TGG | 0.519842 | 5_4:-10999540 | None:intergenic |
| CAGATCCCGGCTAATTCAGC+TGG | 0.521586 | 5_4:+10997067 | Msa0837180:intron |
| CTGTAGCAGGATTTATGGTA+AGG | 0.522745 | 5_4:-10996091 | None:intergenic |
| ACAATAGATCAGAGCAGTAA+AGG | 0.524405 | 5_4:-10999625 | None:intergenic |
| GGTGGAAAGAGGTGGGGAGA+AGG | 0.524431 | 5_4:-10995083 | None:intergenic |
| GCACTAAATGAGGCCATTGA+GGG | 0.528915 | 5_4:+10997481 | Msa0837180:CDS |
| ACCAATGCCTCATCTTGGTA+TGG | 0.530638 | 5_4:+10998521 | Msa0837180:three_prime_UTR |
| AAGAAGCAATCTACTATGAT+GGG | 0.531441 | 5_4:+10999488 | Msa0837180:three_prime_UTR |
| TATGGAGATGGATTCAGATC+GGG | 0.531474 | 5_4:+10998385 | Msa0837180:CDS |
| ACCTCACCAGCCTATGGAGA+TGG | 0.534287 | 5_4:+10998373 | Msa0837180:CDS |
| CCTCAAGTTGATCTTTGGCA+CGG | 0.534386 | 5_4:-10994977 | None:intergenic |
| CTGAATCCATCTCCATAGGC+TGG | 0.535577 | 5_4:-10998379 | None:intergenic |
| GACGAGGAAGATGAGAATGT+TGG | 0.536005 | 5_4:+10994894 | Msa0837180:CDS |
| AATCTAGTAAAAGGGTAGGA+GGG | 0.536629 | 5_4:-10998891 | None:intergenic |
| AAAATGGAATCTAGTTCTAG+TGG | 0.537056 | 5_4:-10993696 | None:intergenic |
| ACCTGAATCCTGGTGGAAAG+AGG | 0.537281 | 5_4:-10995094 | None:intergenic |
| CGATCTGAATCCATCTCCAT+AGG | 0.537412 | 5_4:-10998383 | None:intergenic |
| ATCTAGTAAAAGGGTAGGAG+GGG | 0.537596 | 5_4:-10998890 | None:intergenic |
| TGGCTGTCACTTCGCATCGA+CGG | 0.539258 | 5_4:-10997863 | None:intergenic |
| CTCATGAGATAATGCATGCA+TGG | 0.539682 | 5_4:+10998017 | Msa0837180:CDS |
| CCTTCTAGCTAAAATTCAGC+AGG | 0.540630 | 5_4:+10994941 | Msa0837180:CDS |
| AGCACTAAATGAGGCCATTG+AGG | 0.541852 | 5_4:+10997480 | Msa0837180:CDS |
| CAGTTGTCAGATTAATCTGA+TGG | 0.542198 | 5_4:+10998586 | Msa0837180:three_prime_UTR |
| TCCATACCAAGATGAGGCAT+TGG | 0.543013 | 5_4:-10998522 | None:intergenic |
| TATCAGAGGAGGATCTGAAA+GGG | 0.551935 | 5_4:+10994513 | Msa0837180:CDS |
| TGTTATATGGTTACCTAGGA+AGG | 0.552829 | 5_4:-10997902 | None:intergenic |
| GAATCCTGGTGGAAAGAGGT+GGG | 0.554764 | 5_4:-10995090 | None:intergenic |
| CATGCATTATCTCATGAGCT+AGG | 0.555420 | 5_4:-10998012 | None:intergenic |
| CTATCAGAGGAGGATCTGAA+AGG | 0.555665 | 5_4:+10994512 | Msa0837180:CDS |
| TGTTCAACAAAACTTAAACT+CGG | 0.555958 | 5_4:+10998809 | Msa0837180:three_prime_UTR |
| TAATCTAGTAAAAGGGTAGG+AGG | 0.558229 | 5_4:-10998892 | None:intergenic |
| TATCTCCAACATGAAAGAAG+TGG | 0.560309 | 5_4:+10999125 | Msa0837180:three_prime_UTR |
| AGAAAACCAAGTATAGGGGC+AGG | 0.561310 | 5_4:+10997798 | Msa0837180:CDS |
| TGAGGCCAGCTGAATTAGCC+GGG | 0.562601 | 5_4:-10997072 | None:intergenic |
| TTGAGGCCAGAAATTGAAGA+AGG | 0.563599 | 5_4:+10998157 | Msa0837180:CDS |
| TGATTGGCAGATGGCAAGCA+TGG | 0.564914 | 5_4:-10995865 | None:intergenic |
| GGGCAATACAATGGCAAACA+TGG | 0.564946 | 5_4:+10994276 | Msa0837180:CDS |
| ACGGGTCAGTCTATAAGGCT+TGG | 0.569106 | 5_4:-10997844 | None:intergenic |
| TTTAAGAAAACCAAGTATAG+GGG | 0.569581 | 5_4:+10997794 | Msa0837180:CDS |
| GTAAGGACGGTTGCTAGACA+TGG | 0.570040 | 5_4:-10996074 | None:intergenic |
| TGAATCCTGGTGGAAAGAGG+TGG | 0.571390 | 5_4:-10995091 | None:intergenic |
| GCCCATACTTAAGTACCGCC+TGG | 0.571618 | 5_4:-10998411 | None:intergenic |
| AGGAAGACGAGCAACTTGCA+AGG | 0.572451 | 5_4:+10994997 | Msa0837180:CDS |
| AGGAATTCCTACGGTGGTGA+CGG | 0.573043 | 5_4:-10997677 | None:intergenic |
| TCTAGTATTTCATGGTAGAG+AGG | 0.573281 | 5_4:-10997394 | None:intergenic |
| CTATGGAGATGGATTCAGAT+CGG | 0.581389 | 5_4:+10998384 | Msa0837180:CDS |
| TGCAATGCTGAGATTGGCCA+TGG | 0.581581 | 5_4:+10995791 | Msa0837180:CDS |
| GTGCTGTCGAGCTCATGCGT+AGG | 0.583550 | 5_4:-10997136 | None:intergenic |
| TCTAGTAAAAGGGTAGGAGG+GGG | 0.584139 | 5_4:-10998889 | None:intergenic |
| TGTCTTTCCACCAAAAGCAT+AGG | 0.584605 | 5_4:-10997457 | None:intergenic |
| ACCAGGCGGTACTTAAGTAT+GGG | 0.585146 | 5_4:+10998410 | Msa0837180:CDS |
| TTATAGGTTATCCCAACTTG+AGG | 0.585861 | 5_4:+10998140 | Msa0837180:intron |
| AATCTGATGGTTGATAGTGT+TGG | 0.587415 | 5_4:+10998599 | Msa0837180:three_prime_UTR |
| TGGTTATCATGTCTGTGACT+CGG | 0.588138 | 5_4:-10997824 | None:intergenic |
| TTTGATTTGAGAGGATGAAG+GGG | 0.590733 | 5_4:-10998560 | None:intergenic |
| AGAAGGAATCTGTCAAGTGT+TGG | 0.595703 | 5_4:+10998174 | Msa0837180:CDS |
| GGAAAGACAAGCACTAAATG+AGG | 0.596661 | 5_4:+10997471 | Msa0837180:CDS |
| AAGGCCATACAAAACAAGAA+TGG | 0.597233 | 5_4:-10997883 | None:intergenic |
| GGAAGACGAGCAACTTGCAA+GGG | 0.598064 | 5_4:+10994998 | Msa0837180:CDS |
| AGCAGGATTTATGGTAAGGA+CGG | 0.599912 | 5_4:-10996087 | None:intergenic |
| TCCATCTCCATAGGCTGGTG+AGG | 0.600925 | 5_4:-10998374 | None:intergenic |
| GCTGATGTATGAGAATCTCA+AGG | 0.601580 | 5_4:+10999382 | Msa0837180:three_prime_UTR |
| CATAATCAGTGATTGGCAGA+TGG | 0.606004 | 5_4:-10995874 | None:intergenic |
| GTCAAGTGTTGGCTCATATG+TGG | 0.608811 | 5_4:+10998185 | Msa0837180:CDS |
| GGTCAAATGGATATGATCAA+GGG | 0.611026 | 5_4:-10998443 | None:intergenic |
| TGCACTCTCTCTATCAGAGG+AGG | 0.611907 | 5_4:+10994502 | Msa0837180:CDS |
| GGTGTGTGAGAACATCTTTG+AGG | 0.615018 | 5_4:+10998930 | Msa0837180:three_prime_UTR |
| CAACTGATATTTGATTTGAG+AGG | 0.615427 | 5_4:-10998569 | None:intergenic |
| ACTGGTTCTCCTCCTCGACA+TGG | 0.617399 | 5_4:+10995041 | Msa0837180:CDS |
| TAAAGGAAAGAAGCATTGAT+CGG | 0.617929 | 5_4:-10999608 | None:intergenic |
| ACATAATCTAGTAAAAGGGT+AGG | 0.618491 | 5_4:-10998895 | None:intergenic |
| ATGACTTGATTAGAAGAGCT+AGG | 0.619689 | 5_4:-10998837 | None:intergenic |
| TTCTTCGATGATGCAGAACA+CGG | 0.620817 | 5_4:-10998286 | None:intergenic |
| CTGATGTATGAGAATCTCAA+GGG | 0.626688 | 5_4:+10999383 | Msa0837180:three_prime_UTR |
| TATAATTACCTGAATCCTGG+TGG | 0.627643 | 5_4:-10995101 | None:intergenic |
| AATCCTGGTGGAAAGAGGTG+GGG | 0.630175 | 5_4:-10995089 | None:intergenic |
| GGATCTGAACAAGCTAGTGA+AGG | 0.633602 | 5_4:+10998951 | Msa0837180:three_prime_UTR |
| TAGCTTTCAAACTTTCAACA+TGG | 0.634802 | 5_4:-10998475 | None:intergenic |
| AGAGAATCTTTGCCATGTCG+AGG | 0.635073 | 5_4:-10995053 | None:intergenic |
| GATGAGCTCTATACTCAATG+AGG | 0.636611 | 5_4:-10997090 | None:intergenic |
| TCAATTCAGGAACACCCAGT+AGG | 0.636646 | 5_4:-10993756 | None:intergenic |
| ATTTCAGGAGGGCAATACAA+TGG | 0.636955 | 5_4:+10994267 | Msa0837180:CDS |
| AGAGAAGAAGCTCAAGCCAG+AGG | 0.638577 | 5_4:+10999440 | Msa0837180:three_prime_UTR |
| TCGTCAAGATGAAGTCATAG+AGG | 0.640438 | 5_4:-10993614 | None:intergenic |
| TTACCATAAATCCTGCTACA+GGG | 0.641135 | 5_4:+10996093 | Msa0837180:CDS |
| GGATAATCATCATAGTTCAG+TGG | 0.641892 | 5_4:+10994314 | Msa0837180:CDS |
| GCATGGCATTGGAAGCATTG+TGG | 0.647853 | 5_4:-10995848 | None:intergenic |
| GATGAAGACGAAGACGAAGG+CGG | 0.650656 | 5_4:-10998250 | None:intergenic |
| CACCATTTACCTGAAACTAG+AGG | 0.653687 | 5_4:+10997631 | Msa0837180:CDS |
| AATTGCACTCTCTCTATCAG+AGG | 0.658444 | 5_4:+10994499 | Msa0837180:CDS |
| TGTTCTGCATCATCGAAGAA+GGG | 0.659899 | 5_4:+10998289 | Msa0837180:CDS |
| TCTAATCATAGAATTTCAGG+AGG | 0.660809 | 5_4:+10994255 | Msa0837180:CDS |
| TAACAATCCATACCAAGATG+AGG | 0.665468 | 5_4:-10998528 | None:intergenic |
| GAATCTTTGCCATGTCGAGG+AGG | 0.671664 | 5_4:-10995050 | None:intergenic |
| TTGTAGCTGCGAAAGAATGG+AGG | 0.672189 | 5_4:+10997168 | Msa0837180:CDS |
| GATGATGAAGACGAAGACGA+AGG | 0.677210 | 5_4:-10998253 | None:intergenic |
| TGATGTATGAGAATCTCAAG+GGG | 0.695418 | 5_4:+10999384 | Msa0837180:three_prime_UTR |
| CCGTGCCAAAGATCAACTTG+AGG | 0.706058 | 5_4:+10994977 | Msa0837180:CDS |
| ACAACTTTGTAAAATTGACG+AGG | 0.708039 | 5_4:+10994878 | Msa0837180:CDS |
| CTAATCATAGAATTTCAGGA+GGG | 0.718623 | 5_4:+10994256 | Msa0837180:CDS |
| CTTTCGCAGCTACAACAACG+AGG | 0.721804 | 5_4:-10997160 | None:intergenic |
| TTCGATGATGCAGAACACGG+CGG | 0.732822 | 5_4:-10998283 | None:intergenic |
| ATTCAGATCGGGTTACCAGG+CGG | 0.751020 | 5_4:+10998396 | Msa0837180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAATCATTTTATATAAT+CGG | + | chr5_4:10995399-10995418 | Msa0837180:intron | 10.0% |
| !!! | TTTTTTTTTATACTAACATA+TGG | + | chr5_4:10995605-10995624 | Msa0837180:intron | 10.0% |
| !!! | AAGTAAATAATTCAATTTTT+AGG | - | chr5_4:10995658-10995677 | None:intergenic | 10.0% |
| !! | ATATTTACTTAATAAGTTAT+AGG | - | chr5_4:10996767-10996786 | None:intergenic | 10.0% |
| !!! | GATTAATTTGTATAGAAAAA+TGG | - | chr5_4:10993651-10993670 | None:intergenic | 15.0% |
| !! | AAATTCATTCATATTTCATT+GGG | + | chr5_4:10993671-10993690 | Msa0837180:five_prime_UTR | 15.0% |
| !!! | AAAAAACATTCTTTTTTGTT+TGG | + | chr5_4:10993824-10993843 | Msa0837180:intron | 15.0% |
| !!! | AAAAACATTCTTTTTTGTTT+GGG | + | chr5_4:10993825-10993844 | Msa0837180:intron | 15.0% |
| !! | TTAATGTGTATAAGAAATAT+GGG | + | chr5_4:10994623-10994642 | Msa0837180:intron | 15.0% |
| !!! | GATTTTCATAAAAAAGTATT+TGG | - | chr5_4:10995159-10995178 | None:intergenic | 15.0% |
| !!! | TATTAAGTATTTCTGAATTA+TGG | + | chr5_4:10995274-10995293 | Msa0837180:intron | 15.0% |
| !!! | TTGAATCATTTTATATAATC+GGG | + | chr5_4:10995400-10995419 | Msa0837180:intron | 15.0% |
| !!! | TACTTAGATTTTATTAACTA+AGG | - | chr5_4:10995513-10995532 | None:intergenic | 15.0% |
| !! | TTATGAAGATTATATCTATA+TGG | - | chr5_4:10995564-10995583 | None:intergenic | 15.0% |
| !! | ACAATTATTAGATTTCAAAT+AGG | - | chr5_4:10996635-10996654 | None:intergenic | 15.0% |
| !! | AAGATTTGTGAATTATATAA+CGG | + | chr5_4:10997744-10997763 | Msa0837180:intron | 15.0% |
| !! | TATAACATAATCTAGTAAAA+GGG | - | chr5_4:10998902-10998921 | None:intergenic | 15.0% |
| !! | ATATAACATAATCTAGTAAA+AGG | - | chr5_4:10998903-10998922 | None:intergenic | 15.0% |
| !! | AGATTATGTTATATTAAAAG+AGG | + | chr5_4:10998909-10998928 | Msa0837180:three_prime_UTR | 15.0% |
| !! | ATGAATATTTAAACTTGAAT+TGG | + | chr5_4:10999249-10999268 | Msa0837180:three_prime_UTR | 15.0% |
| !! | CAAATTCATTCATATTTCAT+TGG | + | chr5_4:10993670-10993689 | Msa0837180:five_prime_UTR | 20.0% |
| !! | GAAGAAAAAAATATAGAATG+TGG | - | chr5_4:10993726-10993745 | None:intergenic | 20.0% |
| !!! | TATATTATAGTTGTTGATTC+TGG | + | chr5_4:10993921-10993940 | Msa0837180:intron | 20.0% |
| !!! | GGAATAATTTTGTGTAATAT+GGG | + | chr5_4:10994207-10994226 | Msa0837180:exon | 20.0% |
| !! | TTTCAATTTCTTACTAATGA+AGG | - | chr5_4:10994353-10994372 | None:intergenic | 20.0% |
| !! | ATAGTTTGAATATGTAATTG+TGG | + | chr5_4:10994421-10994440 | Msa0837180:intron | 20.0% |
| !! | GTTAATGTGTATAAGAAATA+TGG | + | chr5_4:10994622-10994641 | Msa0837180:intron | 20.0% |
| !! | TAATGTGTATAAGAAATATG+GGG | + | chr5_4:10994624-10994643 | Msa0837180:intron | 20.0% |
| !!! | TTTTACTTATACTTTGGTAT+GGG | - | chr5_4:10994798-10994817 | None:intergenic | 20.0% |
| !!! | ATACTTTTTTATGAAAATCG+CGG | + | chr5_4:10995160-10995179 | Msa0837180:intron | 20.0% |
| !! | ATGATATGAAACATGATAAA+CGG | + | chr5_4:10995455-10995474 | Msa0837180:intron | 20.0% |
| !! | AAAAAAATCGTGAGATATAA+CGG | - | chr5_4:10995592-10995611 | None:intergenic | 20.0% |
| !! | GTTGTTCATTTGTTTAAATA+TGG | - | chr5_4:10995729-10995748 | None:intergenic | 20.0% |
| !! | CAATACGATTATGAATAATA+CGG | + | chr5_4:10996025-10996044 | Msa0837180:intron | 20.0% |
| !! | TTAAAACATTAATAGCAACT+GGG | + | chr5_4:10996924-10996943 | Msa0837180:intron | 20.0% |
| !! | CATAAATTAGAATAGATACT+AGG | - | chr5_4:10997261-10997280 | None:intergenic | 20.0% |
| !! | CTAGTATCTATTCTAATTTA+TGG | + | chr5_4:10997259-10997278 | Msa0837180:intron | 20.0% |
| !!! | AAAAGATATTTTGAATCCTT+TGG | - | chr5_4:10997304-10997323 | None:intergenic | 20.0% |
| !!! | AAATATCTTTTTCTTGATGA+TGG | + | chr5_4:10997313-10997332 | Msa0837180:CDS | 20.0% |
| !! | CATAAAATTCTAGTATTTCA+TGG | - | chr5_4:10997405-10997424 | None:intergenic | 20.0% |
| !!! | GAAATACTAGAATTTTATGA+AGG | + | chr5_4:10997406-10997425 | Msa0837180:CDS | 20.0% |
| !!! | ATTTTAAGAAAACCAAGTAT+AGG | + | chr5_4:10997792-10997811 | Msa0837180:CDS | 20.0% |
| !!! | TTTTAAGAAAACCAAGTATA+GGG | + | chr5_4:10997793-10997812 | Msa0837180:CDS | 20.0% |
| !! | TTTGTCAATTATTTGTATGA+TGG | - | chr5_4:10998688-10998707 | None:intergenic | 20.0% |
| !!! | TAAAGATAAATTTCCTGTTT+TGG | - | chr5_4:10998742-10998761 | None:intergenic | 20.0% |
| !!! | TTTAAGTTTTGTTGAACAAA+GGG | - | chr5_4:10998807-10998826 | None:intergenic | 20.0% |
| !! | TTGAGAATTATGAAGAAAAA+TGG | + | chr5_4:10998995-10999014 | Msa0837180:three_prime_UTR | 20.0% |
| ! | TCTTCTTAAAAAAATCCTAC+TGG | + | chr5_4:10993741-10993760 | Msa0837180:five_prime_UTR | 25.0% |
| ! | CTTCTTAAAAAAATCCTACT+GGG | + | chr5_4:10993742-10993761 | Msa0837180:five_prime_UTR | 25.0% |
| !! | GGGAATAATTTTGTGTAATA+TGG | + | chr5_4:10994206-10994225 | Msa0837180:exon | 25.0% |
| !! | TAATTTTGTGTAATATGGGT+TGG | + | chr5_4:10994211-10994230 | Msa0837180:exon | 25.0% |
| !!! | TACAATTTTTCTGAGACTTA+AGG | + | chr5_4:10994396-10994415 | Msa0837180:intron | 25.0% |
| !! | TAAGAAATATGGGGATATTT+TGG | + | chr5_4:10994633-10994652 | Msa0837180:intron | 25.0% |
| !! | CTTTTACTTATACTTTGGTA+TGG | - | chr5_4:10994799-10994818 | None:intergenic | 25.0% |
| ! | CATACCAAAGTATAAGTAAA+AGG | + | chr5_4:10994797-10994816 | Msa0837180:intron | 25.0% |
| ! | ATTATGAGATAAAGAACATG+AGG | - | chr5_4:10994823-10994842 | None:intergenic | 25.0% |
| ! | ATATATAATTACCTGAATCC+TGG | - | chr5_4:10995107-10995126 | None:intergenic | 25.0% |
| !!! | TTCTGTTTGGCAATATTTTT+TGG | - | chr5_4:10995235-10995254 | None:intergenic | 25.0% |
| ! | GTTTCATAACATATTCTGTT+TGG | - | chr5_4:10995248-10995267 | None:intergenic | 25.0% |
| ! | TCAGAAATACTTAATAACTG+AGG | - | chr5_4:10995270-10995289 | None:intergenic | 25.0% |
| !! | AAAAGTGTAAAGGAAAACAA+GGG | - | chr5_4:10995354-10995373 | None:intergenic | 25.0% |
| !! | AAAAAGTGTAAAGGAAAACA+AGG | - | chr5_4:10995355-10995374 | None:intergenic | 25.0% |
| ! | GTTTATCATGTTTCATATCA+TGG | - | chr5_4:10995456-10995475 | None:intergenic | 25.0% |
| !! | ATCCTATTTTCATATGTTCA+TGG | + | chr5_4:10995693-10995712 | Msa0837180:intron | 25.0% |
| ! | ATCCATGAACATATGAAAAT+AGG | - | chr5_4:10995698-10995717 | None:intergenic | 25.0% |
| ! | TAGTTGTTCATTTCAATAAC+TGG | + | chr5_4:10996538-10996557 | Msa0837180:intron | 25.0% |
| ! | ATAACTATGACTGAAATTTG+AGG | - | chr5_4:10996704-10996723 | None:intergenic | 25.0% |
| ! | TATCATATGCTTGAAATATG+AGG | + | chr5_4:10996727-10996746 | Msa0837180:intron | 25.0% |
| ! | GTTAAAACATTAATAGCAAC+TGG | + | chr5_4:10996923-10996942 | Msa0837180:intron | 25.0% |
| ! | TAAAACATTAATAGCAACTG+GGG | + | chr5_4:10996925-10996944 | Msa0837180:intron | 25.0% |
| ! | TGTTTCCTAATTAGTAACAA+CGG | - | chr5_4:10997225-10997244 | None:intergenic | 25.0% |
| ! | TGAAGGTTTAAATATGAAAG+TGG | + | chr5_4:10997423-10997442 | Msa0837180:CDS | 25.0% |
| ! | AAAGTAACAACTCTTAAGTT+AGG | - | chr5_4:10997586-10997605 | None:intergenic | 25.0% |
| !!! | TACTTGGTTTTCTTAAAATC+TGG | - | chr5_4:10997791-10997810 | None:intergenic | 25.0% |
| ! | TTTAAGAAAACCAAGTATAG+GGG | + | chr5_4:10997794-10997813 | Msa0837180:CDS | 25.0% |
| ! | TTGTGAAATCAGATGTTATA+TGG | - | chr5_4:10997918-10997937 | None:intergenic | 25.0% |
| ! | CTTTCACTGTATATAATTCA+AGG | + | chr5_4:10997956-10997975 | Msa0837180:intron | 25.0% |
| ! | TATGTTTATAGATTGTTGAC+AGG | + | chr5_4:10997983-10998002 | Msa0837180:intron | 25.0% |
| !!! | GAATTCTTAAAAAGTGCTTT+AGG | - | chr5_4:10998720-10998739 | None:intergenic | 25.0% |
| !!! | CTTTTTAAGAATTCCAAAAC+AGG | + | chr5_4:10998726-10998745 | Msa0837180:three_prime_UTR | 25.0% |
| !!! | GTTTAAGTTTTGTTGAACAA+AGG | - | chr5_4:10998808-10998827 | None:intergenic | 25.0% |
| ! | TGTTCAACAAAACTTAAACT+CGG | + | chr5_4:10998809-10998828 | Msa0837180:three_prime_UTR | 25.0% |
| ! | ATTAAATGTGTGCATTCTAA+GGG | - | chr5_4:10999547-10999566 | None:intergenic | 25.0% |
| !! | AAAATGGAATCTAGTTCTAG+TGG | - | chr5_4:10993699-10993718 | None:intergenic | 30.0% |
| TATAGAATGTGGTGAGAAAA+TGG | - | chr5_4:10993715-10993734 | None:intergenic | 30.0% | |
| TCGAAGAATTTCTTCAATTC+AGG | - | chr5_4:10993772-10993791 | None:intergenic | 30.0% | |
| AAGAAATTCTTCGAACTAAC+AGG | + | chr5_4:10993778-10993797 | Msa0837180:five_prime_UTR | 30.0% | |
| ! | AAAGTTTCTTGAAAGCATAG+CGG | + | chr5_4:10993887-10993906 | Msa0837180:intron | 30.0% |
| CAAAATACAGATGTAAACAC+CGG | - | chr5_4:10994071-10994090 | None:intergenic | 30.0% | |
| !! | TGGCATATTTTCAGGAAAAA+GGG | + | chr5_4:10994186-10994205 | Msa0837180:intron | 30.0% |
| TGGTTTACAAAGTTTCTCAA+TGG | + | chr5_4:10994231-10994250 | Msa0837180:CDS | 30.0% | |
| TCTAATCATAGAATTTCAGG+AGG | + | chr5_4:10994255-10994274 | Msa0837180:CDS | 30.0% | |
| CTAATCATAGAATTTCAGGA+GGG | + | chr5_4:10994256-10994275 | Msa0837180:CDS | 30.0% | |
| ! | AACATGGTGATGATAGAATT+TGG | + | chr5_4:10994292-10994311 | Msa0837180:CDS | 30.0% |
| ! | ACATGGTGATGATAGAATTT+GGG | + | chr5_4:10994293-10994312 | Msa0837180:CDS | 30.0% |
| ! | TGGGTAACATATGTTTCTAA+TGG | + | chr5_4:10994693-10994712 | Msa0837180:intron | 30.0% |
| TTTATCTCATAATGTCTCAG+AGG | + | chr5_4:10994830-10994849 | Msa0837180:intron | 30.0% | |
| ACAACTTTGTAAAATTGACG+AGG | + | chr5_4:10994878-10994897 | Msa0837180:CDS | 30.0% | |
| ATTCAATTAAGTTTGAGCAC+TGG | + | chr5_4:10995023-10995042 | Msa0837180:CDS | 30.0% | |
| !! | TTGGATTTGCTAATCAGATA+AGG | - | chr5_4:10995140-10995159 | None:intergenic | 30.0% |
| TCAGAGATTTAGTACATATG+CGG | + | chr5_4:10995307-10995326 | Msa0837180:intron | 30.0% | |
| AAAGTGTAAAGGAAAACAAG+GGG | - | chr5_4:10995353-10995372 | None:intergenic | 30.0% | |
| ! | AAGAGGACAAAAAAGTGTAA+AGG | - | chr5_4:10995364-10995383 | None:intergenic | 30.0% |
| ATTTACTTTGTCACGAAACA+TGG | + | chr5_4:10995670-10995689 | Msa0837180:intron | 30.0% | |
| AAACAAATGAACAACATACC+TGG | + | chr5_4:10995734-10995753 | Msa0837180:intron | 30.0% | |
| TGCAACTTAAAAATCTTCCA+TGG | - | chr5_4:10995811-10995830 | None:intergenic | 30.0% | |
| !!! | TGGAAGATTTTTAAGTTGCA+TGG | + | chr5_4:10995811-10995830 | Msa0837180:CDS | 30.0% |
| !!! | GGAAGATTTTTAAGTTGCAT+GGG | + | chr5_4:10995812-10995831 | Msa0837180:CDS | 30.0% |
| TACTCAGCAATTCATTAGTT+AGG | + | chr5_4:10995966-10995985 | Msa0837180:intron | 30.0% | |
| ACTCAGCAATTCATTAGTTA+GGG | + | chr5_4:10995967-10995986 | Msa0837180:intron | 30.0% | |
| GAAAACTGTAAAGGAACAAA+TGG | - | chr5_4:10996055-10996074 | None:intergenic | 30.0% | |
| ATCAAAGTAGTCTCTTATCA+TGG | + | chr5_4:10996214-10996233 | Msa0837180:intron | 30.0% | |
| AATGACTGCTTCATATATTC+TGG | + | chr5_4:10996483-10996502 | Msa0837180:intron | 30.0% | |
| AACTATATCCAACTCATGAA+GGG | - | chr5_4:10996523-10996542 | None:intergenic | 30.0% | |
| ! | TCATGTTAGTTTCTCTTTAC+AGG | - | chr5_4:10996658-10996677 | None:intergenic | 30.0% |
| ! | ACTGAAATTTGAGGTTAATC+AGG | - | chr5_4:10996695-10996714 | None:intergenic | 30.0% |
| ! | TGATAGACATGTCATTGTTT+TGG | - | chr5_4:10996981-10997000 | None:intergenic | 30.0% |
| !! | CAGTATTTTTGTATCCAGAA+AGG | - | chr5_4:10997115-10997134 | None:intergenic | 30.0% |
| GTTTCCTAATTAGTAACAAC+GGG | - | chr5_4:10997224-10997243 | None:intergenic | 30.0% | |
| TTTGCTTCACTATTGAATGT+AGG | + | chr5_4:10997603-10997622 | Msa0837180:intron | 30.0% | |
| TTGCTTCACTATTGAATGTA+GGG | + | chr5_4:10997604-10997623 | Msa0837180:intron | 30.0% | |
| AGTTTGAAAAGAGTCGAATT+TGG | - | chr5_4:10997708-10997727 | None:intergenic | 30.0% | |
| TTTCTTGCATGATGTTATCA+GGG | - | chr5_4:10998070-10998089 | None:intergenic | 30.0% | |
| ATTTCTTGCATGATGTTATC+AGG | - | chr5_4:10998071-10998090 | None:intergenic | 30.0% | |
| !! | TCTGATTTTGAGAAGAAACT+TGG | + | chr5_4:10998319-10998338 | Msa0837180:CDS | 30.0% |
| TAGCTTTCAAACTTTCAACA+TGG | - | chr5_4:10998478-10998497 | None:intergenic | 30.0% | |
| !! | TGAACATACTCTAGAACAAA+AGG | - | chr5_4:10998777-10998796 | None:intergenic | 30.0% |
| ACATAATCTAGTAAAAGGGT+AGG | - | chr5_4:10998898-10998917 | None:intergenic | 30.0% | |
| AAGAAGCAATCTACTATGAT+GGG | + | chr5_4:10999488-10999507 | Msa0837180:three_prime_UTR | 30.0% | |
| GATTAAATGTGTGCATTCTA+AGG | - | chr5_4:10999548-10999567 | None:intergenic | 30.0% | |
| !! | TAAAGGAAAGAAGCATTGAT+CGG | - | chr5_4:10999611-10999630 | None:intergenic | 30.0% |
| TTATTGCTTCTGACAATCTT+TGG | + | chr5_4:10999647-10999666 | Msa0837180:three_prime_UTR | 30.0% | |
| TGGTAGAAAACTTGTAGAGA+CGG | + | chr5_4:10993941-10993960 | Msa0837180:intron | 35.0% | |
| ACATAGATACCAACACATGT+CGG | - | chr5_4:10994004-10994023 | None:intergenic | 35.0% | |
| !! | GTGGCATATTTTCAGGAAAA+AGG | + | chr5_4:10994185-10994204 | Msa0837180:intron | 35.0% |
| ! | GGCTCTAATCATAGAATTTC+AGG | + | chr5_4:10994252-10994271 | Msa0837180:CDS | 35.0% |
| GGATAATCATCATAGTTCAG+TGG | + | chr5_4:10994314-10994333 | Msa0837180:CDS | 35.0% | |
| !!! | ATGTCTTCTTTTTCGACATC+CGG | - | chr5_4:10994470-10994489 | None:intergenic | 35.0% |
| AGTTAAGTTCCAACTCAAAG+TGG | + | chr5_4:10994673-10994692 | Msa0837180:intron | 35.0% | |
| GTTAAGTTCCAACTCAAAGT+GGG | + | chr5_4:10994674-10994693 | Msa0837180:intron | 35.0% | |
| ATATGTTACCCACTTTGAGT+TGG | - | chr5_4:10994685-10994704 | None:intergenic | 35.0% | |
| CTAATGGTTAGAGATCATTG+AGG | + | chr5_4:10994709-10994728 | Msa0837180:intron | 35.0% | |
| TTTGGTATGGGATAGATGAT+CGG | - | chr5_4:10994786-10994805 | None:intergenic | 35.0% | |
| ! | GAGGCCTTTTACTTATACTT+TGG | - | chr5_4:10994804-10994823 | None:intergenic | 35.0% |
| TATAATTACCTGAATCCTGG+TGG | - | chr5_4:10995104-10995123 | None:intergenic | 35.0% | |
| ACCTAATAAAGTGGACGATA+AGG | + | chr5_4:10995198-10995217 | Msa0837180:intron | 35.0% | |
| GCATATGTACTAAATCTCTG+AGG | - | chr5_4:10995308-10995327 | None:intergenic | 35.0% | |
| AAGTGTAAAGGAAAACAAGG+GGG | - | chr5_4:10995352-10995371 | None:intergenic | 35.0% | |
| !!! | CTTTTTTGTCCTCTTTCTCA+TGG | + | chr5_4:10995369-10995388 | Msa0837180:intron | 35.0% |
| ! | ATGAACAACATACCTGGTTT+TGG | + | chr5_4:10995740-10995759 | Msa0837180:intron | 35.0% |
| ! | CAGAGAAATTTTCCAAAACC+AGG | - | chr5_4:10995755-10995774 | None:intergenic | 35.0% |
| !!! | AGATTTTTAAGTTGCATGGG+AGG | + | chr5_4:10995815-10995834 | Msa0837180:CDS | 35.0% |
| !!! | GATTTTTAAGTTGCATGGGA+GGG | + | chr5_4:10995816-10995835 | Msa0837180:CDS | 35.0% |
| !!! | ATTTTTAAGTTGCATGGGAG+GGG | + | chr5_4:10995817-10995836 | Msa0837180:CDS | 35.0% |
| CTAACCTCATAATCAGTGAT+TGG | - | chr5_4:10995884-10995903 | None:intergenic | 35.0% | |
| CTAGACATGGAAAACTGTAA+AGG | - | chr5_4:10996064-10996083 | None:intergenic | 35.0% | |
| TTACCATAAATCCTGCTACA+GGG | + | chr5_4:10996093-10996112 | Msa0837180:CDS | 35.0% | |
| TCTTGCAAACATCACATCTT+GGG | - | chr5_4:10996129-10996148 | None:intergenic | 35.0% | |
| TTCTTGCAAACATCACATCT+TGG | - | chr5_4:10996130-10996149 | None:intergenic | 35.0% | |
| GCTTCTTAAACATTGAGGTT+GGG | - | chr5_4:10996400-10996419 | None:intergenic | 35.0% | |
| AGCTTCTTAAACATTGAGGT+TGG | - | chr5_4:10996401-10996420 | None:intergenic | 35.0% | |
| GAACAGCTTCTTAAACATTG+AGG | - | chr5_4:10996405-10996424 | None:intergenic | 35.0% | |
| TCTCACTTCTCAAAAATGTG+AGG | + | chr5_4:10996423-10996442 | Msa0837180:intron | 35.0% | |
| GCTTCATATATTCTGGTAAC+CGG | + | chr5_4:10996490-10996509 | Msa0837180:intron | 35.0% | |
| CAACTATATCCAACTCATGA+AGG | - | chr5_4:10996524-10996543 | None:intergenic | 35.0% | |
| GTTCATTTCAATAACTGGTC+TGG | + | chr5_4:10996543-10996562 | Msa0837180:intron | 35.0% | |
| !!! | TGAAGGCATTGAATTTTGGA+AGG | - | chr5_4:10996851-10996870 | None:intergenic | 35.0% |
| !!! | TGGTTGAAGGCATTGAATTT+TGG | - | chr5_4:10996855-10996874 | None:intergenic | 35.0% |
| !!! | CATGTCATTGTTTTGGTAAG+AGG | - | chr5_4:10996974-10996993 | None:intergenic | 35.0% |
| TATTCTTCCATTACAGATCC+CGG | + | chr5_4:10997054-10997073 | Msa0837180:intron | 35.0% | |
| TCTAGTATTTCATGGTAGAG+AGG | - | chr5_4:10997397-10997416 | None:intergenic | 35.0% | |
| ATAACAGAAAGACAGAAGGA+GGG | - | chr5_4:10997563-10997582 | None:intergenic | 35.0% | |
| TAGGATAACAGAAAGACAGA+AGG | - | chr5_4:10997567-10997586 | None:intergenic | 35.0% | |
| !!! | ACAGCCATTCTTGTTTTGTA+TGG | + | chr5_4:10997879-10997898 | Msa0837180:CDS | 35.0% |
| AAGGCCATACAAAACAAGAA+TGG | - | chr5_4:10997886-10997905 | None:intergenic | 35.0% | |
| TGTTATATGGTTACCTAGGA+AGG | - | chr5_4:10997905-10997924 | None:intergenic | 35.0% | |
| CAGATGTTATATGGTTACCT+AGG | - | chr5_4:10997909-10997928 | None:intergenic | 35.0% | |
| TTATAGGTTATCCCAACTTG+AGG | + | chr5_4:10998140-10998159 | Msa0837180:intron | 35.0% | |
| CAGATTCCTTCTTCAATTTC+TGG | - | chr5_4:10998166-10998185 | None:intergenic | 35.0% | |
| TTAGAATCAGAGCTCTATTC+TGG | + | chr5_4:10998208-10998227 | Msa0837180:CDS | 35.0% | |
| GGTCAAATGGATATGATCAA+GGG | - | chr5_4:10998446-10998465 | None:intergenic | 35.0% | |
| CTTGATCATATCCATTTGAC+CGG | + | chr5_4:10998445-10998464 | Msa0837180:CDS | 35.0% | |
| CTTTCAACATGGAAAAGTTC+CGG | - | chr5_4:10998467-10998486 | None:intergenic | 35.0% | |
| TAACAATCCATACCAAGATG+AGG | - | chr5_4:10998531-10998550 | None:intergenic | 35.0% | |
| CAGTTGTCAGATTAATCTGA+TGG | + | chr5_4:10998586-10998605 | Msa0837180:three_prime_UTR | 35.0% | |
| !! | AATCTGATGGTTGATAGTGT+TGG | + | chr5_4:10998599-10998618 | Msa0837180:three_prime_UTR | 35.0% |
| ! | TTCAACGACTGAGTTTTTGT+TGG | + | chr5_4:10998641-10998660 | Msa0837180:three_prime_UTR | 35.0% |
| !!! | AGTTTTGTTGAACAAAGGGT+GGG | - | chr5_4:10998803-10998822 | None:intergenic | 35.0% |
| !!! | AAGTTTTGTTGAACAAAGGG+TGG | - | chr5_4:10998804-10998823 | None:intergenic | 35.0% |
| ATGACTTGATTAGAAGAGCT+AGG | - | chr5_4:10998840-10998859 | None:intergenic | 35.0% | |
| ! | GTGAGACATTTTGTAGTTGT+GGG | - | chr5_4:10998870-10998889 | None:intergenic | 35.0% |
| AATCTAGTAAAAGGGTAGGA+GGG | - | chr5_4:10998894-10998913 | None:intergenic | 35.0% | |
| TAATCTAGTAAAAGGGTAGG+AGG | - | chr5_4:10998895-10998914 | None:intergenic | 35.0% | |
| CTATCAACACTCTTAACAAC+TGG | + | chr5_4:10999091-10999110 | Msa0837180:three_prime_UTR | 35.0% | |
| TATCTCCAACATGAAAGAAG+TGG | + | chr5_4:10999125-10999144 | Msa0837180:three_prime_UTR | 35.0% | |
| AACTTCCACTTCTTTCATGT+TGG | - | chr5_4:10999133-10999152 | None:intergenic | 35.0% | |
| CATATCAGCTTCTCAAGAAT+TGG | - | chr5_4:10999305-10999324 | None:intergenic | 35.0% | |
| CTGATGTATGAGAATCTCAA+GGG | + | chr5_4:10999383-10999402 | Msa0837180:three_prime_UTR | 35.0% | |
| TGATGTATGAGAATCTCAAG+GGG | + | chr5_4:10999384-10999403 | Msa0837180:three_prime_UTR | 35.0% | |
| GAAGAAGCAATCTACTATGA+TGG | + | chr5_4:10999487-10999506 | Msa0837180:three_prime_UTR | 35.0% | |
| ! | TACTATGATGGGAGAAATGA+TGG | + | chr5_4:10999499-10999518 | Msa0837180:three_prime_UTR | 35.0% |
| ACAATAGATCAGAGCAGTAA+AGG | - | chr5_4:10999628-10999647 | None:intergenic | 35.0% | |
| TCGTCAAGATGAAGTCATAG+AGG | - | chr5_4:10993617-10993636 | None:intergenic | 40.0% | |
| ! | TACCAGACACGTTTTCGATA+AGG | - | chr5_4:10993980-10993999 | None:intergenic | 40.0% |
| TGAAAATATGCCACACAAGC+AGG | - | chr5_4:10994179-10994198 | None:intergenic | 40.0% | |
| ! | TGCTTGTGTGGCATATTTTC+AGG | + | chr5_4:10994178-10994197 | Msa0837180:intron | 40.0% |
| ATTTCAGGAGGGCAATACAA+TGG | + | chr5_4:10994267-10994286 | Msa0837180:CDS | 40.0% | |
| AATTGCACTCTCTCTATCAG+AGG | + | chr5_4:10994499-10994518 | Msa0837180:CDS | 40.0% | |
| TATCAGAGGAGGATCTGAAA+GGG | + | chr5_4:10994513-10994532 | Msa0837180:CDS | 40.0% | |
| CTGAAAGGGAAGAAAGTTGT+TGG | + | chr5_4:10994527-10994546 | Msa0837180:CDS | 40.0% | |
| ATCTCATAATGTCTCAGAGG+AGG | + | chr5_4:10994833-10994852 | Msa0837180:intron | 40.0% | |
| !!! | CCTGCTGAATTTTAGCTAGA+AGG | - | chr5_4:10994944-10994963 | None:intergenic | 40.0% |
| ! | CCTTCTAGCTAAAATTCAGC+AGG | + | chr5_4:10994941-10994960 | Msa0837180:CDS | 40.0% |
| !! | GTCTTCCTCAAGTTGATCTT+TGG | - | chr5_4:10994985-10995004 | None:intergenic | 40.0% |
| GCTAGTTGCACCTAATAAAG+TGG | + | chr5_4:10995189-10995208 | Msa0837180:intron | 40.0% | |
| GCCTTATCGTCCACTTTATT+AGG | - | chr5_4:10995202-10995221 | None:intergenic | 40.0% | |
| AGTGTAAAGGAAAACAAGGG+GGG | - | chr5_4:10995351-10995370 | None:intergenic | 40.0% | |
| AAATGTCGTCCATGAGAAAG+AGG | - | chr5_4:10995381-10995400 | None:intergenic | 40.0% | |
| AACGGTATTGCCATTGTGAA+AGG | + | chr5_4:10995473-10995492 | Msa0837180:intron | 40.0% | |
| ACGGTATTGCCATTGTGAAA+GGG | + | chr5_4:10995474-10995493 | Msa0837180:intron | 40.0% | |
| ACACAAAACCCCTTTCACAA+TGG | - | chr5_4:10995486-10995505 | None:intergenic | 40.0% | |
| CATAATCAGTGATTGGCAGA+TGG | - | chr5_4:10995877-10995896 | None:intergenic | 40.0% | |
| ! | TCTGCCAATCACTGATTATG+AGG | + | chr5_4:10995877-10995896 | Msa0837180:CDS | 40.0% |
| AGCAGGATTTATGGTAAGGA+CGG | - | chr5_4:10996090-10996109 | None:intergenic | 40.0% | |
| CTGTAGCAGGATTTATGGTA+AGG | - | chr5_4:10996094-10996113 | None:intergenic | 40.0% | |
| CTTACCATAAATCCTGCTAC+AGG | + | chr5_4:10996092-10996111 | Msa0837180:CDS | 40.0% | |
| TGTGTAAAAGAGTCCCACAT+TGG | + | chr5_4:10996296-10996315 | Msa0837180:intron | 40.0% | |
| GTCCCACATTGGATAACAAA+TGG | + | chr5_4:10996307-10996326 | Msa0837180:intron | 40.0% | |
| !! | GGCCATTTGTTATCCAATGT+GGG | - | chr5_4:10996312-10996331 | None:intergenic | 40.0% |
| !! | AGGCCATTTGTTATCCAATG+TGG | - | chr5_4:10996313-10996332 | None:intergenic | 40.0% |
| ! | CCTGAACATGTGTTTAGAGT+GGG | + | chr5_4:10996330-10996349 | Msa0837180:intron | 40.0% |
| ! | CTGAACATGTGTTTAGAGTG+GGG | + | chr5_4:10996331-10996350 | Msa0837180:intron | 40.0% |
| ! | TGAACATGTGTTTAGAGTGG+GGG | + | chr5_4:10996332-10996351 | Msa0837180:intron | 40.0% |
| AATACTCGAGTATGTTCTGC+TGG | + | chr5_4:10996454-10996473 | Msa0837180:intron | 40.0% | |
| ATACTCGAGTATGTTCTGCT+GGG | + | chr5_4:10996455-10996474 | Msa0837180:intron | 40.0% | |
| !! | GGCATTGAATTTTGGAAGGA+AGG | - | chr5_4:10996847-10996866 | None:intergenic | 40.0% |
| AATTCAATGCCTTCAACCAC+AGG | + | chr5_4:10996856-10996875 | Msa0837180:intron | 40.0% | |
| ATTCAATGCCTTCAACCACA+GGG | + | chr5_4:10996857-10996876 | Msa0837180:intron | 40.0% | |
| GATGAGCTCTATACTCAATG+AGG | - | chr5_4:10997093-10997112 | None:intergenic | 40.0% | |
| AGTATAGAGCTCATCCTTTC+TGG | + | chr5_4:10997098-10997117 | Msa0837180:CDS | 40.0% | |
| TTGTTGTAGCTGCGAAAGAA+TGG | + | chr5_4:10997165-10997184 | Msa0837180:CDS | 40.0% | |
| ! | ACAACGGGATGGAATGTTTT+GGG | - | chr5_4:10997209-10997228 | None:intergenic | 40.0% |
| ! | AACAACGGGATGGAATGTTT+TGG | - | chr5_4:10997210-10997229 | None:intergenic | 40.0% |
| CCTAATTAGTAACAACGGGA+TGG | - | chr5_4:10997220-10997239 | None:intergenic | 40.0% | |
| CCATCCCGTTGTTACTAATT+AGG | + | chr5_4:10997217-10997236 | Msa0837180:intron | 40.0% | |
| TTTCTAATCTGTGCAGCCAA+AGG | + | chr5_4:10997285-10997304 | Msa0837180:intron | 40.0% | |
| GTGTCTAGACTCAGCAATTA+TGG | + | chr5_4:10997354-10997373 | Msa0837180:CDS | 40.0% | |
| GTATTTCATGGTAGAGAGGT+TGG | - | chr5_4:10997393-10997412 | None:intergenic | 40.0% | |
| ! | TGTCTTTCCACCAAAAGCAT+AGG | - | chr5_4:10997460-10997479 | None:intergenic | 40.0% |
| GGAAAGACAAGCACTAAATG+AGG | + | chr5_4:10997471-10997490 | Msa0837180:CDS | 40.0% | |
| ! | CACATTCTTTTCTCCCTCAA+TGG | - | chr5_4:10997497-10997516 | None:intergenic | 40.0% |
| GATAACAGAAAGACAGAAGG+AGG | - | chr5_4:10997564-10997583 | None:intergenic | 40.0% | |
| CACCATTTACCTGAAACTAG+AGG | + | chr5_4:10997631-10997650 | Msa0837180:CDS | 40.0% | |
| ! | GTCCTCTAGTTTCAGGTAAA+TGG | - | chr5_4:10997636-10997655 | None:intergenic | 40.0% |
| TTGGAAGCAAGGAATTCCTA+CGG | - | chr5_4:10997689-10997708 | None:intergenic | 40.0% | |
| AAGAGTCGAATTTGGAAGCA+AGG | - | chr5_4:10997700-10997719 | None:intergenic | 40.0% | |
| TGGTTATCATGTCTGTGACT+CGG | - | chr5_4:10997827-10997846 | None:intergenic | 40.0% | |
| !! | TTGTTTTGTATGGCCTTCCT+AGG | + | chr5_4:10997889-10997908 | Msa0837180:CDS | 40.0% |
| TGATTTCACAATCTAGCGCT+TGG | + | chr5_4:10997927-10997946 | Msa0837180:intron | 40.0% | |
| CATGCATTATCTCATGAGCT+AGG | - | chr5_4:10998015-10998034 | None:intergenic | 40.0% | |
| CTCATGAGATAATGCATGCA+TGG | + | chr5_4:10998017-10998036 | Msa0837180:CDS | 40.0% | |
| TGCATGATGTTATCAGGGAA+CGG | - | chr5_4:10998065-10998084 | None:intergenic | 40.0% | |
| !! | TCAATTTCTGGCCTCAAGTT+GGG | - | chr5_4:10998154-10998173 | None:intergenic | 40.0% |
| !! | TTCAATTTCTGGCCTCAAGT+TGG | - | chr5_4:10998155-10998174 | None:intergenic | 40.0% |
| TTGAGGCCAGAAATTGAAGA+AGG | + | chr5_4:10998157-10998176 | Msa0837180:CDS | 40.0% | |
| AGAAGGAATCTGTCAAGTGT+TGG | + | chr5_4:10998174-10998193 | Msa0837180:CDS | 40.0% | |
| TTCTTCGATGATGCAGAACA+CGG | - | chr5_4:10998289-10998308 | None:intergenic | 40.0% | |
| TGTTCTGCATCATCGAAGAA+GGG | + | chr5_4:10998289-10998308 | Msa0837180:CDS | 40.0% | |
| ! | CTATGGAGATGGATTCAGAT+CGG | + | chr5_4:10998384-10998403 | Msa0837180:CDS | 40.0% |
| ! | TATGGAGATGGATTCAGATC+GGG | + | chr5_4:10998385-10998404 | Msa0837180:CDS | 40.0% |
| CGGTCAAATGGATATGATCA+AGG | - | chr5_4:10998447-10998466 | None:intergenic | 40.0% | |
| ATGGAAAAGTTCCGGTCAAA+TGG | - | chr5_4:10998459-10998478 | None:intergenic | 40.0% | |
| TATGAACCAATGCCTCATCT+TGG | + | chr5_4:10998516-10998535 | Msa0837180:three_prime_UTR | 40.0% | |
| ! | CGACTGAGTTTTTGTTGGAT+AGG | + | chr5_4:10998646-10998665 | Msa0837180:three_prime_UTR | 40.0% |
| !! | CATTTTGTAGTTGTGGGTTG+AGG | - | chr5_4:10998864-10998883 | None:intergenic | 40.0% |
| ! | GGTGAGACATTTTGTAGTTG+TGG | - | chr5_4:10998871-10998890 | None:intergenic | 40.0% |
| ATCTAGTAAAAGGGTAGGAG+GGG | - | chr5_4:10998893-10998912 | None:intergenic | 40.0% | |
| ATCAGACTCTCCTTTCTATC+TGG | + | chr5_4:10999196-10999215 | Msa0837180:three_prime_UTR | 40.0% | |
| ! | GATGAAGCATCCAGATAGAA+AGG | - | chr5_4:10999209-10999228 | None:intergenic | 40.0% |
| GCTGATGTATGAGAATCTCA+AGG | + | chr5_4:10999382-10999401 | Msa0837180:three_prime_UTR | 40.0% | |
| TGAGAATCTCAAGGGGAATA+TGG | + | chr5_4:10999391-10999410 | Msa0837180:three_prime_UTR | 40.0% | |
| ! | CTTTAGCTCATCATAACCTC+TGG | - | chr5_4:10999459-10999478 | None:intergenic | 40.0% |
| CAGAGGTTATGATGAGCTAA+AGG | + | chr5_4:10999457-10999476 | Msa0837180:three_prime_UTR | 40.0% | |
| ! | AATGTGTGCATTCTAAGGGT+TGG | - | chr5_4:10999543-10999562 | None:intergenic | 40.0% |
| TCAATTCAGGAACACCCAGT+AGG | - | chr5_4:10993759-10993778 | None:intergenic | 45.0% | |
| CTCCTTATCGAAAACGTGTC+TGG | + | chr5_4:10993975-10993994 | Msa0837180:intron | 45.0% | |
| GTTAGTGTCCATGTTGTGTC+CGG | + | chr5_4:10994049-10994068 | Msa0837180:intron | 45.0% | |
| TGTAAACACCGGACACAACA+TGG | - | chr5_4:10994060-10994079 | None:intergenic | 45.0% | |
| ! | TGTTTTGTGACCTGCTTGTG+TGG | + | chr5_4:10994166-10994185 | Msa0837180:intron | 45.0% |
| GGGCAATACAATGGCAAACA+TGG | + | chr5_4:10994276-10994295 | Msa0837180:CDS | 45.0% | |
| AATTGTGGTGAACTGAGTGC+AGG | + | chr5_4:10994436-10994455 | Msa0837180:intron | 45.0% | |
| CTATCAGAGGAGGATCTGAA+AGG | + | chr5_4:10994512-10994531 | Msa0837180:CDS | 45.0% | |
| GACGAGGAAGATGAGAATGT+TGG | + | chr5_4:10994894-10994913 | Msa0837180:CDS | 45.0% | |
| !! | CCTCAAGTTGATCTTTGGCA+CGG | - | chr5_4:10994980-10994999 | None:intergenic | 45.0% |
| AGAGAATCTTTGCCATGTCG+AGG | - | chr5_4:10995056-10995075 | None:intergenic | 45.0% | |
| CGGTATTGCCATTGTGAAAG+GGG | + | chr5_4:10995475-10995494 | Msa0837180:intron | 45.0% | |
| TTTCTCTGCAGAATCTGTGC+TGG | + | chr5_4:10995767-10995786 | Msa0837180:intron | 45.0% | |
| TCTCCCTGTAGCAGGATTTA+TGG | - | chr5_4:10996099-10996118 | None:intergenic | 45.0% | |
| GCTGCAATGTACATATGCTC+TGG | + | chr5_4:10996255-10996274 | Msa0837180:intron | 45.0% | |
| GCCTGAACATGTGTTTAGAG+TGG | + | chr5_4:10996329-10996348 | Msa0837180:intron | 45.0% | |
| CCCACTCTAAACACATGTTC+AGG | - | chr5_4:10996333-10996352 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | - | chr5_4:10996376-10996395 | None:intergenic | 45.0% | |
| ATATATTCTGGTAACCGGCC+TGG | + | chr5_4:10996495-10996514 | Msa0837180:intron | 45.0% | |
| ! | CAATAACTGGTCTGGTACTG+TGG | + | chr5_4:10996551-10996570 | Msa0837180:intron | 45.0% |
| TGGTACTGTGGAACAGATCA+TGG | + | chr5_4:10996563-10996582 | Msa0837180:intron | 45.0% | |
| TTCATACTCCCTGTGGTTGA+AGG | - | chr5_4:10996868-10996887 | None:intergenic | 45.0% | |
| TGTTGCATTCATACTCCCTG+TGG | - | chr5_4:10996875-10996894 | None:intergenic | 45.0% | |
| ! | TGCAAGCAACAAGTGTTGTG+TGG | + | chr5_4:10997017-10997036 | Msa0837180:intron | 45.0% |
| GAATTAGCCGGGATCTGTAA+TGG | - | chr5_4:10997064-10997083 | None:intergenic | 45.0% | |
| TTGTAGCTGCGAAAGAATGG+AGG | + | chr5_4:10997168-10997187 | Msa0837180:CDS | 45.0% | |
| ! | GCAGCAAGTTCCTATGCTTT+TGG | + | chr5_4:10997447-10997466 | Msa0837180:CDS | 45.0% |
| ! | GCAAGTTCCTATGCTTTTGG+TGG | + | chr5_4:10997450-10997469 | Msa0837180:CDS | 45.0% |
| AGCACTAAATGAGGCCATTG+AGG | + | chr5_4:10997480-10997499 | Msa0837180:CDS | 45.0% | |
| GCACTAAATGAGGCCATTGA+GGG | + | chr5_4:10997481-10997500 | Msa0837180:CDS | 45.0% | |
| ! | AAGCAGAGTCCTCTAGTTTC+AGG | - | chr5_4:10997643-10997662 | None:intergenic | 45.0% |
| AGAAAACCAAGTATAGGGGC+AGG | + | chr5_4:10997798-10997817 | Msa0837180:CDS | 45.0% | |
| AGATAATGCATGCATGGCTC+AGG | + | chr5_4:10998023-10998042 | Msa0837180:CDS | 45.0% | |
| !! | GTCAAGTGTTGGCTCATATG+TGG | + | chr5_4:10998185-10998204 | Msa0837180:CDS | 45.0% |
| TCAGAGCTCTATTCTGGATC+TGG | + | chr5_4:10998214-10998233 | Msa0837180:CDS | 45.0% | |
| CAGAGCTCTATTCTGGATCT+GGG | + | chr5_4:10998215-10998234 | Msa0837180:CDS | 45.0% | |
| GATGATGAAGACGAAGACGA+AGG | - | chr5_4:10998256-10998275 | None:intergenic | 45.0% | |
| GTGTTCTGCATCATCGAAGA+AGG | + | chr5_4:10998288-10998307 | Msa0837180:CDS | 45.0% | |
| ! | GTGAGGTATCTGACTCAATC+TGG | - | chr5_4:10998360-10998379 | None:intergenic | 45.0% |
| CGATCTGAATCCATCTCCAT+AGG | - | chr5_4:10998386-10998405 | None:intergenic | 45.0% | |
| TACCAGGCGGTACTTAAGTA+TGG | + | chr5_4:10998409-10998428 | Msa0837180:CDS | 45.0% | |
| ACCAGGCGGTACTTAAGTAT+GGG | + | chr5_4:10998410-10998429 | Msa0837180:CDS | 45.0% | |
| ACCAATGCCTCATCTTGGTA+TGG | + | chr5_4:10998521-10998540 | Msa0837180:three_prime_UTR | 45.0% | |
| TCCATACCAAGATGAGGCAT+TGG | - | chr5_4:10998525-10998544 | None:intergenic | 45.0% | |
| TCTAGTAAAAGGGTAGGAGG+GGG | - | chr5_4:10998892-10998911 | None:intergenic | 45.0% | |
| GGTGTGTGAGAACATCTTTG+AGG | + | chr5_4:10998930-10998949 | Msa0837180:three_prime_UTR | 45.0% | |
| GGATCTGAACAAGCTAGTGA+AGG | + | chr5_4:10998951-10998970 | Msa0837180:three_prime_UTR | 45.0% | |
| !!! | AATATATGTTTTTTTTTTAT+AGG | + | chr5_4:10998124-10998143 | Msa0837180:intron | 5.0% |
| GTCTGGTATCCGACATGTGT+TGG | + | chr5_4:10993992-10994011 | Msa0837180:intron | 50.0% | |
| ! | CTGAGTGCAGGATGATTTGC+CGG | + | chr5_4:10994448-10994467 | Msa0837180:intron | 50.0% |
| TGCACTCTCTCTATCAGAGG+AGG | + | chr5_4:10994502-10994521 | Msa0837180:CDS | 50.0% | |
| CCGTGCCAAAGATCAACTTG+AGG | + | chr5_4:10994977-10994996 | Msa0837180:CDS | 50.0% | |
| AGGAAGACGAGCAACTTGCA+AGG | + | chr5_4:10994997-10995016 | Msa0837180:CDS | 50.0% | |
| GGAAGACGAGCAACTTGCAA+GGG | + | chr5_4:10994998-10995017 | Msa0837180:CDS | 50.0% | |
| GAATCTTTGCCATGTCGAGG+AGG | - | chr5_4:10995053-10995072 | None:intergenic | 50.0% | |
| AATCCTGGTGGAAAGAGGTG+GGG | - | chr5_4:10995092-10995111 | None:intergenic | 50.0% | |
| GAATCCTGGTGGAAAGAGGT+GGG | - | chr5_4:10995093-10995112 | None:intergenic | 50.0% | |
| TGAATCCTGGTGGAAAGAGG+TGG | - | chr5_4:10995094-10995113 | None:intergenic | 50.0% | |
| ACCTCTTTCCACCAGGATTC+AGG | + | chr5_4:10995093-10995112 | Msa0837180:CDS | 50.0% | |
| ACCTGAATCCTGGTGGAAAG+AGG | - | chr5_4:10995097-10995116 | None:intergenic | 50.0% | |
| GCTGGATGCAATGCTGAGAT+TGG | + | chr5_4:10995785-10995804 | Msa0837180:CDS | 50.0% | |
| ! | TGCAATGCTGAGATTGGCCA+TGG | + | chr5_4:10995791-10995810 | Msa0837180:CDS | 50.0% |
| !! | GCATGGCATTGGAAGCATTG+TGG | - | chr5_4:10995851-10995870 | None:intergenic | 50.0% |
| TGATTGGCAGATGGCAAGCA+TGG | - | chr5_4:10995868-10995887 | None:intergenic | 50.0% | |
| GTAAGGACGGTTGCTAGACA+TGG | - | chr5_4:10996077-10996096 | None:intergenic | 50.0% | |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | + | chr5_4:10996363-10996382 | Msa0837180:intron | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr5_4:10996374-10996393 | Msa0837180:intron | 50.0% |
| TCCAACTCATGAAGGGATCC+AGG | - | chr5_4:10996516-10996535 | None:intergenic | 50.0% | |
| ATGAGGCCAGCTGAATTAGC+CGG | - | chr5_4:10997076-10997095 | None:intergenic | 50.0% | |
| CTTTCGCAGCTACAACAACG+AGG | - | chr5_4:10997163-10997182 | None:intergenic | 50.0% | |
| AGGAATTCCTACGGTGGTGA+CGG | - | chr5_4:10997680-10997699 | None:intergenic | 50.0% | |
| GAAGCAAGGAATTCCTACGG+TGG | - | chr5_4:10997686-10997705 | None:intergenic | 50.0% | |
| ACGGGTCAGTCTATAAGGCT+TGG | - | chr5_4:10997847-10997866 | None:intergenic | 50.0% | |
| CATCGACGGGTCAGTCTATA+AGG | - | chr5_4:10997852-10997871 | None:intergenic | 50.0% | |
| CATGCATGGCTCAGGCTTAA+AGG | + | chr5_4:10998031-10998050 | Msa0837180:CDS | 50.0% | |
| GATGAAGACGAAGACGAAGG+CGG | - | chr5_4:10998253-10998272 | None:intergenic | 50.0% | |
| TTCGATGATGCAGAACACGG+CGG | - | chr5_4:10998286-10998305 | None:intergenic | 50.0% | |
| TCAGATACCTCACCAGCCTA+TGG | + | chr5_4:10998367-10998386 | Msa0837180:CDS | 50.0% | |
| CTGAATCCATCTCCATAGGC+TGG | - | chr5_4:10998382-10998401 | None:intergenic | 50.0% | |
| TGGATTCAGATCGGGTTACC+AGG | + | chr5_4:10998393-10998412 | Msa0837180:CDS | 50.0% | |
| ATTCAGATCGGGTTACCAGG+CGG | + | chr5_4:10998396-10998415 | Msa0837180:CDS | 50.0% | |
| AGAGGATGAAGGGGCTAGAT+GGG | - | chr5_4:10998554-10998573 | None:intergenic | 50.0% | |
| AGAGAAGAAGCTCAAGCCAG+AGG | + | chr5_4:10999440-10999459 | Msa0837180:three_prime_UTR | 50.0% | |
| ! | ACTGGTTCTCCTCCTCGACA+TGG | + | chr5_4:10995041-10995060 | Msa0837180:CDS | 55.0% |
| TAAGTTGCATGGGAGGGGTC+TGG | + | chr5_4:10995822-10995841 | Msa0837180:CDS | 55.0% | |
| GCAGATGGCAAGCATGGCAT+TGG | - | chr5_4:10995862-10995881 | None:intergenic | 55.0% | |
| GTGATGCTTCTCCCTGTAGC+AGG | - | chr5_4:10996107-10996126 | None:intergenic | 55.0% | |
| GCAATCCTCACCTCACAAGC+CGG | + | chr5_4:10996354-10996373 | Msa0837180:intron | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | - | chr5_4:10996362-10996381 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | + | chr5_4:10996362-10996381 | Msa0837180:intron | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | + | chr5_4:10996364-10996383 | Msa0837180:intron | 55.0% |
| ACTCATGAAGGGATCCAGGC+CGG | - | chr5_4:10996512-10996531 | None:intergenic | 55.0% | |
| GCCTGGATCCCTTCATGAGT+TGG | + | chr5_4:10996512-10996531 | Msa0837180:intron | 55.0% | |
| CAGATCCCGGCTAATTCAGC+TGG | + | chr5_4:10997067-10997086 | Msa0837180:intron | 55.0% | |
| TGAGGCCAGCTGAATTAGCC+GGG | - | chr5_4:10997075-10997094 | None:intergenic | 55.0% | |
| TGCTGTCGAGCTCATGCGTA+GGG | - | chr5_4:10997138-10997157 | None:intergenic | 55.0% | |
| GAACAAACCGTCACCACCGT+AGG | + | chr5_4:10997670-10997689 | Msa0837180:intron | 55.0% | |
| ! | TGGCTGTCACTTCGCATCGA+CGG | - | chr5_4:10997866-10997885 | None:intergenic | 55.0% |
| ACCTCACCAGCCTATGGAGA+TGG | + | chr5_4:10998373-10998392 | Msa0837180:CDS | 55.0% | |
| TCCATCTCCATAGGCTGGTG+AGG | - | chr5_4:10998377-10998396 | None:intergenic | 55.0% | |
| ! | GCCCATACTTAAGTACCGCC+TGG | - | chr5_4:10998414-10998433 | None:intergenic | 55.0% |
| GGTGGAAAGAGGTGGGGAGA+AGG | - | chr5_4:10995086-10995105 | None:intergenic | 60.0% | |
| TCTCCCCACCTCTTTCCACC+AGG | + | chr5_4:10995086-10995105 | Msa0837180:CDS | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | - | chr5_4:10996367-10996386 | None:intergenic | 60.0% |
| GTGCTGTCGAGCTCATGCGT+AGG | - | chr5_4:10997139-10997158 | None:intergenic | 60.0% | |
| CGGTGTCCTGCCCCTATACT+TGG | - | chr5_4:10997807-10997826 | None:intergenic | 60.0% | |
| ! | GGCTGTCACTTCGCATCGAC+GGG | - | chr5_4:10997865-10997884 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 10993574 | 10999718 | 10993574 | ID=Msa0837180;Name=Msa0837180 |
| chr5_4 | mRNA | 10993574 | 10999718 | 10993574 | ID=Msa0837180-mRNA-1;Parent=Msa0837180;Name=Msa0837180-mRNA-1;_AED=0.31;_eAED=0.31;_QI=251|1|1|1|0.90|0.91|12|1235|527 |
| chr5_4 | exon | 10993574 | 10993799 | 10993574 | ID=Msa0837180-mRNA-1:exon:4810;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10994200 | 10994335 | 10994200 | ID=Msa0837180-mRNA-1:exon:4811;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10994458 | 10994548 | 10994458 | ID=Msa0837180-mRNA-1:exon:4812;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10994850 | 10995114 | 10994850 | ID=Msa0837180-mRNA-1:exon:4813;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10995778 | 10995898 | 10995778 | ID=Msa0837180-mRNA-1:exon:4814;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10996070 | 10996153 | 10996070 | ID=Msa0837180-mRNA-1:exon:4815;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10997070 | 10997189 | 10997070 | ID=Msa0837180-mRNA-1:exon:4816;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10997301 | 10997513 | 10997301 | ID=Msa0837180-mRNA-1:exon:4817;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10997625 | 10997687 | 10997625 | ID=Msa0837180-mRNA-1:exon:4818;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10997792 | 10997910 | 10997792 | ID=Msa0837180-mRNA-1:exon:4819;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10997994 | 10998052 | 10997994 | ID=Msa0837180-mRNA-1:exon:4820;Parent=Msa0837180-mRNA-1 |
| chr5_4 | exon | 10998146 | 10999718 | 10998146 | ID=Msa0837180-mRNA-1:exon:4821;Parent=Msa0837180-mRNA-1 |
| chr5_4 | five_prime_UTR | 10993574 | 10993799 | 10993574 | ID=Msa0837180-mRNA-1:five_prime_utr;Parent=Msa0837180-mRNA-1 |
| chr5_4 | five_prime_UTR | 10994200 | 10994224 | 10994200 | ID=Msa0837180-mRNA-1:five_prime_utr;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10994225 | 10994335 | 10994225 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10994458 | 10994548 | 10994458 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10994850 | 10995114 | 10994850 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10995778 | 10995898 | 10995778 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10996070 | 10996153 | 10996070 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10997070 | 10997189 | 10997070 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10997301 | 10997513 | 10997301 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10997625 | 10997687 | 10997625 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10997792 | 10997910 | 10997792 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10997994 | 10998052 | 10997994 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | CDS | 10998146 | 10998483 | 10998146 | ID=Msa0837180-mRNA-1:cds;Parent=Msa0837180-mRNA-1 |
| chr5_4 | three_prime_UTR | 10998484 | 10999718 | 10998484 | ID=Msa0837180-mRNA-1:three_prime_utr;Parent=Msa0837180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
