Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837190 | XP_024639811.1 | 90.027 | 371 | 37 | 0 | 141 | 511 | 382 | 752 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837190 | sp|Q8W4F0|DAR1_ARATH | 76.280 | 371 | 84 | 1 | 140 | 510 | 187 | 553 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837190 | G7KAS2 | 89.785 | 372 | 37 | 1 | 140 | 511 | 155 | 525 | 0.0 | 682 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0837190 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837190 | MtrunA17_Chr8g0373781 | 78.400 | 375 | 78 | 2 | 139 | 510 | 157 | 531 | 0.0 | 595 |
| Msa0837190 | MtrunA17_Chr1g0154501 | 65.768 | 371 | 117 | 3 | 140 | 510 | 108 | 468 | 9.04e-179 | 510 |
| Msa0837190 | MtrunA17_Chr5g0403301 | 84.437 | 302 | 26 | 1 | 210 | 511 | 27 | 307 | 2.98e-174 | 493 |
| Msa0837190 | MtrunA17_Chr5g0436051 | 61.351 | 370 | 136 | 2 | 141 | 510 | 253 | 615 | 3.78e-163 | 476 |
| Msa0837190 | MtrunA17_Chr3g0112601 | 59.299 | 371 | 149 | 2 | 141 | 510 | 143 | 512 | 2.82e-153 | 447 |
| Msa0837190 | MtrunA17_Chr5g0403261 | 75.943 | 212 | 20 | 1 | 140 | 320 | 155 | 366 | 3.37e-113 | 339 |
| Msa0837190 | MtrunA17_Chr5g0403271 | 92.258 | 155 | 11 | 1 | 357 | 511 | 1 | 154 | 7.44e-88 | 266 |
| Msa0837190 | MtrunA17_Chr5g0402671 | 68.116 | 138 | 40 | 1 | 1 | 138 | 1 | 134 | 2.81e-51 | 187 |
| Msa0837190 | MtrunA17_Chr5g0402761 | 49.479 | 192 | 88 | 2 | 1 | 188 | 1 | 187 | 1.98e-48 | 169 |
| Msa0837190 | MtrunA17_Chr5g0402771 | 49.457 | 184 | 84 | 2 | 1 | 184 | 1 | 175 | 3.44e-43 | 164 |
| Msa0837190 | MtrunA17_Chr5g0403281 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 3.89e-41 | 142 |
| Msa0837190 | MtrunA17_Chr5g0403291 | 70.787 | 89 | 25 | 1 | 141 | 229 | 382 | 469 | 1.93e-38 | 147 |
| Msa0837190 | MtrunA17_Chr5g0402721 | 61.069 | 131 | 44 | 3 | 1 | 129 | 1 | 126 | 3.75e-35 | 140 |
| Msa0837190 | MtrunA17_Chr5g0402681 | 56.489 | 131 | 49 | 4 | 1 | 129 | 1 | 125 | 1.56e-31 | 129 |
| Msa0837190 | MtrunA17_Chr5g0402701 | 45.736 | 129 | 70 | 0 | 1 | 129 | 1 | 129 | 1.93e-16 | 82.0 |
| Msa0837190 | MtrunA17_Chr8g0374561 | 33.077 | 130 | 86 | 1 | 1 | 129 | 1 | 130 | 7.97e-13 | 71.2 |
| Msa0837190 | MtrunA17_Chr8g0374301 | 33.333 | 126 | 80 | 2 | 5 | 126 | 1 | 126 | 3.44e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837190 | AT4G36860.3 | 76.280 | 371 | 84 | 1 | 140 | 510 | 211 | 577 | 0.0 | 588 |
| Msa0837190 | AT4G36860.1 | 76.280 | 371 | 84 | 1 | 140 | 510 | 187 | 553 | 0.0 | 587 |
| Msa0837190 | AT1G19270.1 | 63.881 | 371 | 126 | 2 | 140 | 510 | 169 | 531 | 9.53e-179 | 513 |
| Msa0837190 | AT1G19270.2 | 63.881 | 371 | 126 | 2 | 140 | 510 | 169 | 531 | 9.53e-179 | 513 |
| Msa0837190 | AT2G39830.3 | 60.811 | 370 | 143 | 2 | 141 | 510 | 151 | 518 | 3.08e-162 | 471 |
| Msa0837190 | AT2G39830.1 | 60.811 | 370 | 143 | 2 | 141 | 510 | 160 | 527 | 4.64e-162 | 470 |
| Msa0837190 | AT2G39830.2 | 60.322 | 373 | 143 | 3 | 141 | 510 | 160 | 530 | 8.95e-160 | 464 |
| Msa0837190 | AT4G36860.2 | 78.244 | 262 | 57 | 0 | 140 | 401 | 187 | 448 | 8.90e-157 | 454 |
| Msa0837190 | AT5G66620.1 | 52.044 | 367 | 160 | 7 | 142 | 503 | 285 | 640 | 1.78e-121 | 370 |
| Msa0837190 | AT2G39830.4 | 59.712 | 278 | 110 | 2 | 141 | 417 | 160 | 436 | 3.65e-121 | 363 |
| Msa0837190 | AT5G66620.3 | 52.044 | 367 | 160 | 7 | 142 | 503 | 276 | 631 | 4.13e-121 | 369 |
| Msa0837190 | AT5G66620.4 | 52.044 | 367 | 160 | 7 | 142 | 503 | 276 | 631 | 4.13e-121 | 369 |
| Msa0837190 | AT5G66610.3 | 50.959 | 365 | 168 | 5 | 140 | 504 | 71 | 424 | 4.84e-117 | 352 |
| Msa0837190 | AT5G66610.1 | 50.959 | 365 | 168 | 5 | 140 | 504 | 198 | 551 | 2.19e-116 | 355 |
| Msa0837190 | AT5G66610.2 | 47.449 | 392 | 168 | 6 | 140 | 504 | 198 | 578 | 1.35e-110 | 340 |
| Msa0837190 | AT5G66630.1 | 47.684 | 367 | 173 | 8 | 142 | 503 | 346 | 698 | 7.09e-104 | 327 |
| Msa0837190 | AT5G17890.1 | 49.180 | 366 | 177 | 5 | 143 | 503 | 1240 | 1601 | 7.53e-99 | 327 |
| Msa0837190 | AT5G66640.1 | 46.459 | 353 | 177 | 6 | 160 | 503 | 89 | 438 | 2.29e-98 | 305 |
| Msa0837190 | AT5G66640.7 | 46.459 | 353 | 177 | 6 | 160 | 503 | 89 | 438 | 2.29e-98 | 305 |
| Msa0837190 | AT5G66640.5 | 46.459 | 353 | 177 | 6 | 160 | 503 | 121 | 470 | 1.02e-97 | 304 |
| Msa0837190 | AT5G66640.4 | 46.459 | 353 | 177 | 6 | 160 | 503 | 120 | 469 | 1.06e-97 | 304 |
| Msa0837190 | AT5G66640.3 | 48.297 | 323 | 157 | 5 | 190 | 503 | 10 | 331 | 1.21e-95 | 294 |
| Msa0837190 | AT5G66640.6 | 41.926 | 353 | 189 | 7 | 160 | 503 | 121 | 466 | 1.77e-81 | 261 |
| Msa0837190 | AT5G66640.2 | 41.926 | 353 | 189 | 7 | 160 | 503 | 120 | 465 | 2.00e-81 | 261 |
| Msa0837190 | AT5G66620.2 | 47.598 | 229 | 107 | 5 | 142 | 367 | 276 | 494 | 3.56e-67 | 225 |
Find 148 sgRNAs with CRISPR-Local
Find 409 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTAGAGTTCATCCTTTC+TGG | 0.143060 | 5_4:+11009269 | Msa0837190:CDS |
| TACCAGGCGGTACTTAATTA+TGG | 0.181401 | 5_4:+11010642 | Msa0837190:CDS |
| CATCGACGGGTCAGTTTATA+AGG | 0.209815 | 5_4:-11010083 | None:intergenic |
| TGAAGGTTTAAATATGAAAA+TGG | 0.232742 | 5_4:+11009671 | Msa0837190:CDS |
| CATGCATGGCTCAGGCTTAA+AGG | 0.237169 | 5_4:+11010265 | Msa0837190:CDS |
| GCCCTCTAGTTTCAGGTAAA+TGG | 0.252523 | 5_4:-11009867 | None:intergenic |
| CAGATTCCTTCTTCAACTTC+TGG | 0.254170 | 5_4:-11010399 | None:intergenic |
| GTGTCTTGACTCGGCAATTA+TGG | 0.257320 | 5_4:+11009602 | Msa0837190:CDS |
| TTTGGAAGCTTTGGCTCCTT+TGG | 0.266951 | 5_4:+11005081 | Msa0837190:CDS |
| CATTGAAACTTTGGAAGCTT+TGG | 0.286764 | 5_4:+11005072 | Msa0837190:CDS |
| TGAGAATAGAAGGGATTTGA+TGG | 0.317102 | 5_4:+11005312 | Msa0837190:CDS |
| TTGGGATCAGAGCTCTATTC+TGG | 0.333955 | 5_4:+11010444 | Msa0837190:CDS |
| CATAAAATTCTAGTATTTCT+CGG | 0.334425 | 5_4:-11009650 | None:intergenic |
| GTGGCAAGTTCCTATGCTTT+TGG | 0.336928 | 5_4:+11009695 | Msa0837190:CDS |
| TTCAACAACTGAGTTATTGT+TGG | 0.366654 | 5_4:+11010873 | Msa0837190:three_prime_UTR |
| AGATGAGGCATTGGTTCATA+TGG | 0.370290 | 5_4:-11010746 | None:intergenic |
| TGATTCAATACCTCCTACTT+TGG | 0.378280 | 5_4:-11010973 | None:intergenic |
| TCAGAGCTCTATTCTGGATC+TGG | 0.380841 | 5_4:+11010450 | Msa0837190:CDS |
| TGAAACCAGCATTGAAACTT+TGG | 0.382289 | 5_4:+11005063 | Msa0837190:CDS |
| AAGCAGAGCCCTCTAGTTTC+AGG | 0.382892 | 5_4:-11009874 | None:intergenic |
| CTTTCTTCTTAAGCTTTCCT+TGG | 0.383446 | 5_4:-11005249 | None:intergenic |
| ATGTTCAAGTTGAGAATAGA+AGG | 0.387869 | 5_4:+11005302 | Msa0837190:CDS |
| TAAGTTGCATGGGAGGTGTC+TGG | 0.392885 | 5_4:+11008456 | Msa0837190:CDS |
| TGATATTTGATTCGAGGAAA+TGG | 0.393698 | 5_4:-11010796 | None:intergenic |
| GAATGGTTTCAACGATTTGT+TGG | 0.393705 | 5_4:+11005114 | Msa0837190:CDS |
| ACCAGGCGGTACTTAATTAT+GGG | 0.395993 | 5_4:+11010643 | Msa0837190:CDS |
| TTCTTGCAAACATCGCATCT+TGG | 0.397900 | 5_4:-11008764 | None:intergenic |
| TCTCCCTGTAGCAGGACTTA+TGG | 0.399080 | 5_4:-11008733 | None:intergenic |
| ATGAGGCCAGCTGAATTAAC+GGG | 0.399836 | 5_4:-11009244 | None:intergenic |
| GTTGGATAGGCAAAGGGATT+CGG | 0.412194 | 5_4:+11010891 | Msa0837190:three_prime_UTR |
| TCTTGCAAACATCGCATCTT+GGG | 0.413124 | 5_4:-11008763 | None:intergenic |
| ATCTTGGCTCATATGTGGTT+GGG | 0.414724 | 5_4:+11010426 | Msa0837190:CDS |
| ATGGAAAAGTTCCGGTCAAA+TGG | 0.421969 | 5_4:-11010689 | None:intergenic |
| AATGAGGCCAGCTGAATTAA+CGG | 0.430262 | 5_4:-11009245 | None:intergenic |
| AATGGTTTCAACGATTTGTT+GGG | 0.430601 | 5_4:+11005115 | Msa0837190:CDS |
| TTTGTCAATTATTTGTATGA+TGG | 0.440224 | 5_4:-11010917 | None:intergenic |
| TGCCGTCAAGCTCATGAGTT+GGG | 0.454821 | 5_4:-11009306 | None:intergenic |
| TATCTTGGCTCATATGTGGT+TGG | 0.457273 | 5_4:+11010425 | Msa0837190:CDS |
| CTTTCACAGCTACAACAACT+TGG | 0.459035 | 5_4:-11009331 | None:intergenic |
| CCTTGGTAACGTGGGAAAGA+AGG | 0.460904 | 5_4:-11005232 | None:intergenic |
| GACGACTGATATTTGATTCG+AGG | 0.463348 | 5_4:-11010802 | None:intergenic |
| CGGTCAAATGGATATGATCA+AGG | 0.464591 | 5_4:-11010677 | None:intergenic |
| ACGGGTCAGTTTATAAGGCT+TGG | 0.464724 | 5_4:-11010078 | None:intergenic |
| AGCTTCCAAAGTTTCAATGC+TGG | 0.465355 | 5_4:-11005068 | None:intergenic |
| CTAACCTCAAAATCAGTGAT+TGG | 0.470214 | 5_4:-11008515 | None:intergenic |
| GGCTGTCACTTCGCATCGAC+GGG | 0.470821 | 5_4:-11010096 | None:intergenic |
| CAGATCCCCGTTAATTCAGC+TGG | 0.472004 | 5_4:+11009238 | Msa0837190:intron |
| AGAAGGAATCTGTCATATCT+TGG | 0.472510 | 5_4:+11010410 | Msa0837190:CDS |
| TTCTTCTGCATCATCGAAGA+AGG | 0.473185 | 5_4:+11010521 | Msa0837190:CDS |
| CTATTAAGTGGAGGTGCTGT+TGG | 0.475176 | 5_4:+11004968 | Msa0837190:CDS |
| TATGTTTATAGATTGTTGAC+AGG | 0.479289 | 5_4:+11010217 | Msa0837190:intron |
| CAACTGAGTTATTGTTGGAT+AGG | 0.480468 | 5_4:+11010878 | Msa0837190:three_prime_UTR |
| AGGAAATGGAGGGGCTAGAC+AGG | 0.480929 | 5_4:-11010782 | None:intergenic |
| GTGATGCTTCTCCCTGTAGC+AGG | 0.482197 | 5_4:-11008741 | None:intergenic |
| GTGAGGTATCTGACTCAATC+TGG | 0.485020 | 5_4:-11010590 | None:intergenic |
| CCTTTGGTTGCAGAAATGAA+TGG | 0.490038 | 5_4:+11005097 | Msa0837190:CDS |
| AAGCTTAAGAAGAAAGATGA+AGG | 0.493473 | 5_4:+11005256 | Msa0837190:CDS |
| TCAGATACCTCACCAGCCTA+TGG | 0.497390 | 5_4:+11010600 | Msa0837190:CDS |
| AGATAATGCATGCATGGCTC+AGG | 0.501774 | 5_4:+11010257 | Msa0837190:CDS |
| ACCAATGCCTCATCTTGGTC+CGG | 0.504902 | 5_4:+11010754 | Msa0837190:three_prime_UTR |
| GTTATTGTTGGATAGGCAAA+GGG | 0.504907 | 5_4:+11010885 | Msa0837190:three_prime_UTR |
| TTCAATGCTGGTTTCAAGTG+TGG | 0.506107 | 5_4:-11005056 | None:intergenic |
| TATGAACCAATGCCTCATCT+TGG | 0.506474 | 5_4:+11010749 | Msa0837190:three_prime_UTR |
| CTTGATCATATCCATTTGAC+CGG | 0.509477 | 5_4:+11010678 | Msa0837190:CDS |
| GGTTGATAGTGTTGGTCTCT+CGG | 0.509803 | 5_4:+11010838 | Msa0837190:three_prime_UTR |
| TTCAACTTCTGGCCTCAAGT+TGG | 0.514833 | 5_4:-11010388 | None:intergenic |
| TGGATTCAGATCGGGTTACC+AGG | 0.515296 | 5_4:+11010626 | Msa0837190:CDS |
| TCAATGCTGGTTTCAAGTGT+GGG | 0.517607 | 5_4:-11005055 | None:intergenic |
| TTTAAGAATTCCAAAGTAGG+AGG | 0.525784 | 5_4:+11010963 | Msa0837190:three_prime_UTR |
| AGTTATTGTTGGATAGGCAA+AGG | 0.526357 | 5_4:+11010884 | Msa0837190:three_prime_UTR |
| TTCGATGATGCAGAAGAAGA+TGG | 0.527970 | 5_4:-11010516 | None:intergenic |
| AGTAGGAGGTATTGAATCAA+AGG | 0.528265 | 5_4:+11010977 | Msa0837190:three_prime_UTR |
| TTTGTATACAAAATCTGTGC+GGG | 0.529190 | 5_4:+11008401 | Msa0837190:CDS |
| TATGGAGATGGATTCAGATC+GGG | 0.531474 | 5_4:+11010618 | Msa0837190:CDS |
| AAATCTTCCATGGCAAATCT+CGG | 0.533441 | 5_4:-11008432 | None:intergenic |
| TTAAGTGGAGGTGCTGTTGG+AGG | 0.533913 | 5_4:+11004971 | Msa0837190:CDS |
| ACCTCACCAGCCTATGGAGA+TGG | 0.534287 | 5_4:+11010606 | Msa0837190:CDS |
| AATCTCTCTATCTCTTCTCT+CGG | 0.534541 | 5_4:-11005142 | None:intergenic |
| CTGAATCCATCTCCATAGGC+TGG | 0.535577 | 5_4:-11010612 | None:intergenic |
| CGATCTGAATCCATCTCCAT+AGG | 0.537412 | 5_4:-11010616 | None:intergenic |
| CTTACCATAAGTCCTGCTAC+AGG | 0.538626 | 5_4:+11008729 | Msa0837190:CDS |
| TGGCTGTCACTTCGCATCGA+CGG | 0.539258 | 5_4:-11010097 | None:intergenic |
| CTCATGAGATAATGCATGCA+TGG | 0.539682 | 5_4:+11010251 | Msa0837190:CDS |
| AGGGGCTAGACAGGTCCCTC+CGG | 0.540577 | 5_4:-11010773 | None:intergenic |
| AACTGATTCAGACTAATGTA+TGG | 0.543111 | 5_4:+11008236 | Msa0837190:intron |
| TGCCCAACTCATGAGCTTGA+CGG | 0.543153 | 5_4:+11009304 | Msa0837190:CDS |
| GTATTTCTCGGTAGAGAGGT+TGG | 0.543209 | 5_4:-11009638 | None:intergenic |
| AAAGCCATACAAAACAAGAA+TGG | 0.546980 | 5_4:-11010117 | None:intergenic |
| TTGTTGTAGCTGTGAAAGAA+TGG | 0.548998 | 5_4:+11009336 | Msa0837190:CDS |
| ACAAGCACTAAAAGAGGCCA+TGG | 0.549930 | 5_4:+11009725 | Msa0837190:CDS |
| TGTTCAAGTTGAGAATAGAA+GGG | 0.550405 | 5_4:+11005303 | Msa0837190:CDS |
| CAGTCGTCGGATTAATCTGA+TGG | 0.551391 | 5_4:+11010817 | Msa0837190:three_prime_UTR |
| CTGTAGCAGGACTTATGGTA+AGG | 0.553104 | 5_4:-11008728 | None:intergenic |
| TCCGGACCAAGATGAGGCAT+TGG | 0.553171 | 5_4:-11010755 | None:intergenic |
| CATGCATTATCTCATGAGCT+AGG | 0.555420 | 5_4:-11010246 | None:intergenic |
| CAGAGCTCTATTCTGGATCT+GGG | 0.556242 | 5_4:+11010451 | Msa0837190:CDS |
| GTCATATCTTGGCTCATATG+TGG | 0.561001 | 5_4:+11010421 | Msa0837190:CDS |
| GATGAGGCATTGGTTCATAT+GGG | 0.565570 | 5_4:-11010745 | None:intergenic |
| GCCCATAATTAAGTACCGCC+TGG | 0.567070 | 5_4:-11010644 | None:intergenic |
| GTGCCGTCAAGCTCATGAGT+TGG | 0.570183 | 5_4:-11009307 | None:intergenic |
| TGCATGGCGGATCTATTAAG+TGG | 0.570389 | 5_4:+11004956 | None:intergenic |
| TTATAGGTTATTCCAACTTG+AGG | 0.571882 | 5_4:+11010376 | Msa0837190:intron |
| TCTAGTATTTCTCGGTAGAG+AGG | 0.572580 | 5_4:-11009642 | None:intergenic |
| TTAGAGAAACACATAAGAGA+AGG | 0.572972 | 5_4:+11005163 | Msa0837190:CDS |
| GGAAAGACAAGCACTAAAAG+AGG | 0.575269 | 5_4:+11009719 | Msa0837190:CDS |
| GAATAGAAGGGATTTGATGG+AGG | 0.577512 | 5_4:+11005315 | Msa0837190:CDS |
| TTAAGCTTTCCTTGGTAACG+TGG | 0.577842 | 5_4:-11005241 | None:intergenic |
| CTATGGAGATGGATTCAGAT+CGG | 0.581389 | 5_4:+11010617 | Msa0837190:CDS |
| TGCAATGCCGAGATTTGCCA+TGG | 0.581684 | 5_4:+11008425 | Msa0837190:CDS |
| TTGAGGCCAGAAGTTGAAGA+AGG | 0.583699 | 5_4:+11010393 | Msa0837190:CDS |
| TGTCTTTCCACCAAAAGCAT+AGG | 0.584605 | 5_4:-11009705 | None:intergenic |
| CCATTCATTTCTGCAACCAA+AGG | 0.585398 | 5_4:-11005097 | None:intergenic |
| CCTTCTTTCCCACGTTACCA+AGG | 0.586461 | 5_4:+11005232 | Msa0837190:CDS |
| ATTTGATTCGAGGAAATGGA+GGG | 0.586564 | 5_4:-11010792 | None:intergenic |
| CAAGCATGACAGACGAAGCA+TGG | 0.587021 | 5_4:-11008485 | None:intergenic |
| AATCTGATGGTTGATAGTGT+TGG | 0.587415 | 5_4:+11010830 | Msa0837190:three_prime_UTR |
| ACCATTTACCTGAAACTAGA+GGG | 0.591314 | 5_4:+11009866 | Msa0837190:CDS |
| TATTTGATTCGAGGAAATGG+AGG | 0.595269 | 5_4:-11010793 | None:intergenic |
| CAAAATCAGTGATTGGCAGA+TGG | 0.598645 | 5_4:-11008508 | None:intergenic |
| TACCATTTACCTGAAACTAG+AGG | 0.599700 | 5_4:+11009865 | Msa0837190:CDS |
| TCCATCTCCATAGGCTGGTG+AGG | 0.600925 | 5_4:-11010607 | None:intergenic |
| TAAGCTTTCCTTGGTAACGT+GGG | 0.602459 | 5_4:-11005240 | None:intergenic |
| GTAAGGACTATTGCTAGACA+TGG | 0.605124 | 5_4:-11008711 | None:intergenic |
| GATGAACTCTAAACTCAATG+AGG | 0.605371 | 5_4:-11009261 | None:intergenic |
| TGGTTATCATGTCTGTGACT+CGG | 0.605556 | 5_4:-11010058 | None:intergenic |
| GGTCAAATGGATATGATCAA+GGG | 0.611026 | 5_4:-11010676 | None:intergenic |
| AAAGCAAGAAGCTTACTCGA+TGG | 0.613136 | 5_4:+11005203 | Msa0837190:CDS |
| TCTTCTGCATCATCGAAGAA+GGG | 0.619394 | 5_4:+11010522 | Msa0837190:CDS |
| ATGCCTCATCTTGGTCCGGA+GGG | 0.621392 | 5_4:+11010758 | Msa0837190:three_prime_UTR |
| ATGTCTCGAGTGTCTTGACT+CGG | 0.625398 | 5_4:+11009593 | Msa0837190:CDS |
| AATGCCTCATCTTGGTCCGG+AGG | 0.635383 | 5_4:+11010757 | Msa0837190:three_prime_UTR |
| TTACCATAAGTCCTGCTACA+GGG | 0.636079 | 5_4:+11008730 | Msa0837190:CDS |
| GCACTAAAAGAGGCCATGGA+GGG | 0.638359 | 5_4:+11009729 | Msa0837190:CDS |
| GGTCCCTCCGGACCAAGATG+AGG | 0.638637 | 5_4:-11010761 | None:intergenic |
| AGCTTAAGAAGAAAGATGAA+GGG | 0.648390 | 5_4:+11005257 | Msa0837190:CDS |
| TCGAATCAAATATCAGTCGT+CGG | 0.649214 | 5_4:+11010804 | Msa0837190:three_prime_UTR |
| AGCACTAAAAGAGGCCATGG+AGG | 0.658183 | 5_4:+11009728 | Msa0837190:CDS |
| TTTGATTCGAGGAAATGGAG+GGG | 0.658753 | 5_4:-11010791 | None:intergenic |
| ATTTGTATACAAAATCTGTG+CGG | 0.668443 | 5_4:+11008400 | Msa0837190:CDS |
| GTTTAAATATGAAAATGGAG+TGG | 0.673623 | 5_4:+11009676 | Msa0837190:CDS |
| TTTAAGAAGACCAATTATGG+GGG | 0.681917 | 5_4:+11010028 | Msa0837190:CDS |
| GATGATGATGAAGATGAAGA+CGG | 0.686348 | 5_4:-11010486 | None:intergenic |
| GCATGACAGACGAAGCATGG+TGG | 0.692337 | 5_4:-11008482 | None:intergenic |
| ATGGCGGATCTATTAAGTGG+AGG | 0.698581 | 5_4:+11004959 | Msa0837190:CDS |
| GATGATGCAGAAGAAGATGG+CGG | 0.706334 | 5_4:-11010513 | None:intergenic |
| TTGTAGCTGTGAAAGAATGG+AGG | 0.727987 | 5_4:+11009339 | Msa0837190:CDS |
| TGAGGCCAGCTGAATTAACG+GGG | 0.731118 | 5_4:-11009243 | None:intergenic |
| ATTCAGATCGGGTTACCAGG+CGG | 0.751020 | 5_4:+11010629 | Msa0837190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAAATGAAATTATTTTTT+AGG | - | chr5_4:11006546-11006565 | None:intergenic | 10.0% |
| !! | TTATATTAAATCTTCTAATA+TGG | + | chr5_4:11007113-11007132 | Msa0837190:intron | 10.0% |
| !! | TATATTAAATCTTCTAATAT+GGG | + | chr5_4:11007114-11007133 | Msa0837190:intron | 10.0% |
| !! | AAAAAAAAAATATATCACAA+GGG | + | chr5_4:11009053-11009072 | Msa0837190:intron | 10.0% |
| !!! | AAATATATGGTTTTTTTTAT+AGG | + | chr5_4:11010360-11010379 | Msa0837190:intron | 10.0% |
| !!! | TAAATTATTACTACTGTTTT+AGG | + | chr5_4:11005617-11005636 | Msa0837190:intron | 15.0% |
| !!! | AAATTATTACTACTGTTTTA+GGG | + | chr5_4:11005618-11005637 | Msa0837190:intron | 15.0% |
| !! | TCTAATACATATTAGAATTT+GGG | - | chr5_4:11005734-11005753 | None:intergenic | 15.0% |
| !! | TTTCAATTAAGATATATATG+TGG | + | chr5_4:11006285-11006304 | Msa0837190:intron | 15.0% |
| !!! | AAATTTTATAATCTGACATT+TGG | - | chr5_4:11006872-11006891 | None:intergenic | 15.0% |
| !!! | AATGTCAGATTATAAAATTT+TGG | + | chr5_4:11006872-11006891 | Msa0837190:intron | 15.0% |
| !! | TTAAGAATATGATATCTATA+TGG | - | chr5_4:11008131-11008150 | None:intergenic | 15.0% |
| !!! | TCAAGTTTTTTAATTCATTT+TGG | - | chr5_4:11008198-11008217 | None:intergenic | 15.0% |
| !! | AATTAAAAAACTTGATTGTT+AGG | + | chr5_4:11008203-11008222 | Msa0837190:intron | 15.0% |
| !!! | ATTCTAGTTTTATATTTTCA+TGG | + | chr5_4:11008330-11008349 | Msa0837190:intron | 15.0% |
| !! | CAAAAAAAAAATATATCACA+AGG | + | chr5_4:11009052-11009071 | Msa0837190:intron | 15.0% |
| !!! | TTTTAAATGAAAGAAATTTC+AGG | + | chr5_4:11009159-11009178 | Msa0837190:intron | 15.0% |
| !! | AAAGTTTCATATTAGATAAT+AGG | - | chr5_4:11009460-11009479 | None:intergenic | 15.0% |
| !!! | CTAATATGAAACTTTTTTTT+TGG | + | chr5_4:11009465-11009484 | Msa0837190:intron | 15.0% |
| !! | TAAAATCCTTGAATTATATA+CGG | - | chr5_4:11010199-11010218 | None:intergenic | 15.0% |
| !! | CTCTAATACATATTAGAATT+TGG | - | chr5_4:11005735-11005754 | None:intergenic | 20.0% |
| !!! | GTCTAATCCAAATTTTAATA+TGG | + | chr5_4:11005829-11005848 | Msa0837190:intron | 20.0% |
| !! | TCTGATACCATATTAAAATT+TGG | - | chr5_4:11005839-11005858 | None:intergenic | 20.0% |
| !! | ATAATAGCTTATAACTCATA+TGG | + | chr5_4:11005993-11006012 | Msa0837190:intron | 20.0% |
| !!! | AAAGCTATTTTGTTTTGAAT+AGG | + | chr5_4:11006615-11006634 | Msa0837190:intron | 20.0% |
| !! | TATGACATTAATCAAATTTC+TGG | - | chr5_4:11007781-11007800 | None:intergenic | 20.0% |
| !! | AGAAATTTGATTAATGTCAT+AGG | + | chr5_4:11007780-11007799 | Msa0837190:intron | 20.0% |
| !! | TTTCTTTAGTCTATTACAAT+AGG | + | chr5_4:11008644-11008663 | Msa0837190:intron | 20.0% |
| !!! | GCTATTCTTATTTATTAAAG+AGG | + | chr5_4:11008924-11008943 | Msa0837190:intron | 20.0% |
| !!! | TTCTTATTTATTAAAGAGGT+CGG | + | chr5_4:11008928-11008947 | Msa0837190:intron | 20.0% |
| !! | ATATATGTTTATTACGAAGA+GGG | - | chr5_4:11009499-11009518 | None:intergenic | 20.0% |
| !! | TATATATGTTTATTACGAAG+AGG | - | chr5_4:11009500-11009519 | None:intergenic | 20.0% |
| !!! | AAAAGATATTTTGAATCCTT+TGG | - | chr5_4:11009552-11009571 | None:intergenic | 20.0% |
| !! | CATAAAATTCTAGTATTTCT+CGG | - | chr5_4:11009653-11009672 | None:intergenic | 20.0% |
| !!! | GAAATACTAGAATTTTATGA+AGG | + | chr5_4:11009654-11009673 | Msa0837190:CDS | 20.0% |
| !! | TGAAGGTTTAAATATGAAAA+TGG | + | chr5_4:11009671-11009690 | Msa0837190:CDS | 20.0% |
| !!! | ATTTTAAGAAGACCAATTAT+GGG | + | chr5_4:11010026-11010045 | Msa0837190:CDS | 20.0% |
| !!! | TAACTTTCAAATTTTCAACA+TGG | - | chr5_4:11010711-11010730 | None:intergenic | 20.0% |
| !! | TTTGTCAATTATTTGTATGA+TGG | - | chr5_4:11010920-11010939 | None:intergenic | 20.0% |
| !!! | TTTTTTAAGAATTCCAAAGT+AGG | + | chr5_4:11010960-11010979 | Msa0837190:three_prime_UTR | 20.0% |
| ! | GCTCTTCAAACAATAAAAAA+TGG | + | chr5_4:11005019-11005038 | Msa0837190:CDS | 25.0% |
| ! | ATAAAAAATGGTCGTGAATT+CGG | + | chr5_4:11005031-11005050 | Msa0837190:CDS | 25.0% |
| !!! | TCTTGAGATTTTGATGAAAA+TGG | + | chr5_4:11005360-11005379 | Msa0837190:intron | 25.0% |
| ! | AGTTTGATAGGAATCAAATA+AGG | + | chr5_4:11005386-11005405 | Msa0837190:intron | 25.0% |
| ! | GTTTGATAGGAATCAAATAA+GGG | + | chr5_4:11005387-11005406 | Msa0837190:intron | 25.0% |
| ! | TTTGATAGGAATCAAATAAG+GGG | + | chr5_4:11005388-11005407 | Msa0837190:intron | 25.0% |
| ! | TCAATCTTCAACTTATTCAA+AGG | - | chr5_4:11005460-11005479 | None:intergenic | 25.0% |
| ! | AAGATTGAATTGATGAAAGA+TGG | + | chr5_4:11005472-11005491 | Msa0837190:intron | 25.0% |
| !! | TACATATTAGAATTTGGGTT+GGG | - | chr5_4:11005729-11005748 | None:intergenic | 25.0% |
| ! | ATACATATTAGAATTTGGGT+TGG | - | chr5_4:11005730-11005749 | None:intergenic | 25.0% |
| ! | TAGTAACAAACCTTATGTTA+TGG | + | chr5_4:11006195-11006214 | Msa0837190:intron | 25.0% |
| ! | ATAGTCTAATTGAGATTGAA+TGG | + | chr5_4:11006425-11006444 | Msa0837190:intron | 25.0% |
| !! | TCTCTTTTCTACTCTAATTT+TGG | + | chr5_4:11006477-11006496 | Msa0837190:intron | 25.0% |
| !! | CTCTTTTCTACTCTAATTTT+GGG | + | chr5_4:11006478-11006497 | Msa0837190:intron | 25.0% |
| !! | AAATCCAATACTATTAGTCT+TGG | + | chr5_4:11006800-11006819 | Msa0837190:intron | 25.0% |
| !! | ACAACTTTGAAAACTAATCA+GGG | - | chr5_4:11007167-11007186 | None:intergenic | 25.0% |
| ! | ATATATCCAAACTTTGTTGA+AGG | - | chr5_4:11007602-11007621 | None:intergenic | 25.0% |
| ! | TCAACAAAGTTTGGATATAT+CGG | + | chr5_4:11007602-11007621 | Msa0837190:intron | 25.0% |
| ! | ATAAAGAAGTAAAGAATGCA+TGG | + | chr5_4:11007908-11007927 | Msa0837190:intron | 25.0% |
| !!! | TTCTAAATTTTGCTGATTCA+CGG | + | chr5_4:11008008-11008027 | Msa0837190:intron | 25.0% |
| ! | TGATGAAAATATTTCCATCA+AGG | + | chr5_4:11008076-11008095 | Msa0837190:intron | 25.0% |
| ! | AAAATATTTCCATCAAGGAA+GGG | + | chr5_4:11008081-11008100 | Msa0837190:intron | 25.0% |
| ! | TTTCCATTGTATTGTAAGTT+AGG | + | chr5_4:11008152-11008171 | Msa0837190:intron | 25.0% |
| !!! | TCAATGGTTCATTTTTAGTA+AGG | - | chr5_4:11008366-11008385 | None:intergenic | 25.0% |
| ! | ATTTGTATACAAAATCTGTG+CGG | + | chr5_4:11008400-11008419 | Msa0837190:CDS | 25.0% |
| ! | TGAGTCTTTATGAAAAATTG+TGG | + | chr5_4:11008992-11009011 | Msa0837190:intron | 25.0% |
| ! | GAGTCTTTATGAAAAATTGT+GGG | + | chr5_4:11008993-11009012 | Msa0837190:intron | 25.0% |
| ! | AAAAGACTAAACATTTGAGA+AGG | - | chr5_4:11009437-11009456 | None:intergenic | 25.0% |
| !! | AAATATCTTTTGCTTGATGA+TGG | + | chr5_4:11009561-11009580 | Msa0837190:CDS | 25.0% |
| ! | GTTTAAATATGAAAATGGAG+TGG | + | chr5_4:11009676-11009695 | Msa0837190:CDS | 25.0% |
| !!! | TAATTGGTCTTCTTAAAATC+TGG | - | chr5_4:11010025-11010044 | None:intergenic | 25.0% |
| !!! | GATTTTAAGAAGACCAATTA+TGG | + | chr5_4:11010025-11010044 | Msa0837190:intron | 25.0% |
| !!! | TTTTAAGAAGACCAATTATG+GGG | + | chr5_4:11010027-11010046 | Msa0837190:CDS | 25.0% |
| ! | TTGTGAAAGTAGATGTTATA+TGG | - | chr5_4:11010152-11010171 | None:intergenic | 25.0% |
| ! | TATGTTTATAGATTGTTGAC+AGG | + | chr5_4:11010217-11010236 | Msa0837190:intron | 25.0% |
| ! | GCTAAGTTAGACAAAATATA+TGG | + | chr5_4:11010347-11010366 | Msa0837190:intron | 25.0% |
| ! | AATGGTTTCAACGATTTGTT+GGG | + | chr5_4:11005115-11005134 | Msa0837190:CDS | 30.0% |
| TTAGAGAAACACATAAGAGA+AGG | + | chr5_4:11005163-11005182 | Msa0837190:CDS | 30.0% | |
| AAGCTTAAGAAGAAAGATGA+AGG | + | chr5_4:11005256-11005275 | Msa0837190:CDS | 30.0% | |
| AGCTTAAGAAGAAAGATGAA+GGG | + | chr5_4:11005257-11005276 | Msa0837190:CDS | 30.0% | |
| !! | ATGTTCAAGTTGAGAATAGA+AGG | + | chr5_4:11005302-11005321 | Msa0837190:CDS | 30.0% |
| !! | TGTTCAAGTTGAGAATAGAA+GGG | + | chr5_4:11005303-11005322 | Msa0837190:CDS | 30.0% |
| TGAAAATGGATCAGTTTGAT+AGG | + | chr5_4:11005374-11005393 | Msa0837190:intron | 30.0% | |
| !! | CTATTACTACCTTTGATTTG+TGG | - | chr5_4:11005571-11005590 | None:intergenic | 30.0% |
| AATGTTAAAGAGTTCCAGAT+TGG | + | chr5_4:11005667-11005686 | Msa0837190:intron | 30.0% | |
| !! | AGATTGGTTTGGATAAGATA+CGG | + | chr5_4:11005683-11005702 | Msa0837190:intron | 30.0% |
| !! | AATAAACTAAAAGTGCCTCA+CGG | - | chr5_4:11005959-11005978 | None:intergenic | 30.0% |
| GCTTATAACTCATATGGAAA+TGG | + | chr5_4:11005999-11006018 | Msa0837190:intron | 30.0% | |
| ! | ATTAAGTTGTTTGTCCAAAC+AGG | + | chr5_4:11006104-11006123 | Msa0837190:intron | 30.0% |
| ! | TTAAGTTGTTTGTCCAAACA+GGG | + | chr5_4:11006105-11006124 | Msa0837190:intron | 30.0% |
| AACAAACCTTATGTTATGGT+TGG | + | chr5_4:11006199-11006218 | Msa0837190:intron | 30.0% | |
| !! | TTGCATTTGTTTTCATTGTC+TGG | + | chr5_4:11006239-11006258 | Msa0837190:intron | 30.0% |
| ! | GTTTTCATTGTCTGGATAAT+TGG | + | chr5_4:11006247-11006266 | Msa0837190:intron | 30.0% |
| ATATGTGGTCAATCACTTAT+AGG | + | chr5_4:11006300-11006319 | Msa0837190:intron | 30.0% | |
| TTATAGGAAAGTCTTCTAGA+TGG | + | chr5_4:11006316-11006335 | Msa0837190:intron | 30.0% | |
| CTAATTGAGATTGAATGGAA+TGG | + | chr5_4:11006430-11006449 | Msa0837190:intron | 30.0% | |
| AGAGTAGAAAAGAGATGATA+GGG | - | chr5_4:11006472-11006491 | None:intergenic | 30.0% | |
| TAGAGTAGAAAAGAGATGAT+AGG | - | chr5_4:11006473-11006492 | None:intergenic | 30.0% | |
| GCTTTCTAAATCAAGAAGAA+TGG | - | chr5_4:11006600-11006619 | None:intergenic | 30.0% | |
| !!! | TTGTTTTGAATAGGCAAGTT+TGG | + | chr5_4:11006624-11006643 | Msa0837190:intron | 30.0% |
| TCATCCAAGACTAATAGTAT+TGG | - | chr5_4:11006807-11006826 | None:intergenic | 30.0% | |
| !! | TATTAGTCTTGGATGATGTT+TGG | + | chr5_4:11006811-11006830 | Msa0837190:intron | 30.0% |
| ! | GACAACTTTGAAAACTAATC+AGG | - | chr5_4:11007168-11007187 | None:intergenic | 30.0% |
| ATTAAGCTGTTTATCCAAAC+AGG | - | chr5_4:11007204-11007223 | None:intergenic | 30.0% | |
| TGCTTATCGTATAAGTACTT+TGG | + | chr5_4:11007243-11007262 | Msa0837190:intron | 30.0% | |
| ! | GCTTATTTGAGTTTATCTAC+TGG | - | chr5_4:11007362-11007381 | None:intergenic | 30.0% |
| ! | TAACTATGGACTGTTTGAAT+TGG | - | chr5_4:11007384-11007403 | None:intergenic | 30.0% |
| CTAGTATGCAATACTAACTA+TGG | - | chr5_4:11007398-11007417 | None:intergenic | 30.0% | |
| !! | ATATTTTGCCACTTCTCAAA+AGG | - | chr5_4:11007519-11007538 | None:intergenic | 30.0% |
| AGTGATATTAGACTCAAGAA+CGG | - | chr5_4:11007565-11007584 | None:intergenic | 30.0% | |
| TTGTTACCTTCAACAAAGTT+TGG | + | chr5_4:11007593-11007612 | Msa0837190:intron | 30.0% | |
| TGATTAATGTCATAGGTTCA+AGG | + | chr5_4:11007787-11007806 | Msa0837190:intron | 30.0% | |
| AAAGTACATCTTTCTTGAAG+TGG | - | chr5_4:11007846-11007865 | None:intergenic | 30.0% | |
| GAAAATATTTCCATCAAGGA+AGG | + | chr5_4:11008080-11008099 | Msa0837190:intron | 30.0% | |
| AAATATTTCCATCAAGGAAG+GGG | + | chr5_4:11008082-11008101 | Msa0837190:intron | 30.0% | |
| AGTCCTAACTTACAATACAA+TGG | - | chr5_4:11008158-11008177 | None:intergenic | 30.0% | |
| ! | AACTGATTCAGACTAATGTA+TGG | + | chr5_4:11008236-11008255 | Msa0837190:intron | 30.0% |
| ATCCATATAGTAGACATCTT+TGG | + | chr5_4:11008306-11008325 | Msa0837190:intron | 30.0% | |
| TTCCAAAGATGTCTACTATA+TGG | - | chr5_4:11008311-11008330 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGAACTACGTCAA+TGG | - | chr5_4:11008382-11008401 | None:intergenic | 30.0% |
| TTTGTATACAAAATCTGTGC+GGG | + | chr5_4:11008401-11008420 | Msa0837190:CDS | 30.0% | |
| TGCAACTTAAAAATCTTCCA+TGG | - | chr5_4:11008445-11008464 | None:intergenic | 30.0% | |
| !!! | TGGAAGATTTTTAAGTTGCA+TGG | + | chr5_4:11008445-11008464 | Msa0837190:CDS | 30.0% |
| !!! | GGAAGATTTTTAAGTTGCAT+GGG | + | chr5_4:11008446-11008465 | Msa0837190:CDS | 30.0% |
| ! | AATTTTGTAAGTATCTCAGC+AGG | + | chr5_4:11008785-11008804 | Msa0837190:intron | 30.0% |
| ATCAAAGTTTCCTCTTATCA+TGG | + | chr5_4:11008844-11008863 | Msa0837190:intron | 30.0% | |
| TGAAAACATCACAAGTCATT+GGG | + | chr5_4:11009082-11009101 | Msa0837190:intron | 30.0% | |
| TCCTTACTGGGAAAAAAAAA+AGG | + | chr5_4:11009129-11009148 | Msa0837190:intron | 30.0% | |
| !!! | ACCTTTTTTTTTTCCCAGTA+AGG | - | chr5_4:11009133-11009152 | None:intergenic | 30.0% |
| ! | ATAGCAGGATGAAATGTTTT+TGG | - | chr5_4:11009380-11009399 | None:intergenic | 30.0% |
| TCATCCTGCTATTACTAATT+AGG | + | chr5_4:11009388-11009407 | Msa0837190:intron | 30.0% | |
| !! | TCTTTTTGTTGTCCTAACTT+CGG | + | chr5_4:11009804-11009823 | Msa0837190:intron | 30.0% |
| CAAAATAACAAACCGAAGTT+AGG | - | chr5_4:11009819-11009838 | None:intergenic | 30.0% | |
| AAAACTTGAATTTGGAAGCA+AGG | - | chr5_4:11009934-11009953 | None:intergenic | 30.0% | |
| TTTAAGAAGACCAATTATGG+GGG | + | chr5_4:11010028-11010047 | Msa0837190:CDS | 30.0% | |
| AAAGCCATACAAAACAAGAA+TGG | - | chr5_4:11010120-11010139 | None:intergenic | 30.0% | |
| TAGATGTTATATGGTTACCT+AGG | - | chr5_4:11010143-11010162 | None:intergenic | 30.0% | |
| CTTTCACCGTATATAATTCA+AGG | + | chr5_4:11010190-11010209 | Msa0837190:intron | 30.0% | |
| TTATAGGTTATTCCAACTTG+AGG | + | chr5_4:11010376-11010395 | Msa0837190:intron | 30.0% | |
| ! | TTTTCAACATGGAAAAGTTC+CGG | - | chr5_4:11010700-11010719 | None:intergenic | 30.0% |
| ! | TGATATTTGATTCGAGGAAA+TGG | - | chr5_4:11010799-11010818 | None:intergenic | 30.0% |
| TTCAACAACTGAGTTATTGT+TGG | + | chr5_4:11010873-11010892 | Msa0837190:three_prime_UTR | 30.0% | |
| TTTAAGAATTCCAAAGTAGG+AGG | + | chr5_4:11010963-11010982 | Msa0837190:three_prime_UTR | 30.0% | |
| ! | TGAAACCAGCATTGAAACTT+TGG | + | chr5_4:11005063-11005082 | Msa0837190:CDS | 35.0% |
| ! | CATTGAAACTTTGGAAGCTT+TGG | + | chr5_4:11005072-11005091 | Msa0837190:CDS | 35.0% |
| GAATGGTTTCAACGATTTGT+TGG | + | chr5_4:11005114-11005133 | Msa0837190:CDS | 35.0% | |
| AATCTCTCTATCTCTTCTCT+CGG | - | chr5_4:11005145-11005164 | None:intergenic | 35.0% | |
| CTTTCTTCTTAAGCTTTCCT+TGG | - | chr5_4:11005252-11005271 | None:intergenic | 35.0% | |
| TGAGAATAGAAGGGATTTGA+TGG | + | chr5_4:11005312-11005331 | Msa0837190:CDS | 35.0% | |
| !!! | TTTGATGGAGGTTTTGACTA+AGG | + | chr5_4:11005327-11005346 | Msa0837190:CDS | 35.0% |
| AATCAAATAAGGGGTTTGTG+TGG | + | chr5_4:11005397-11005416 | Msa0837190:intron | 35.0% | |
| ! | TAAAGAGTTCCAGATTGGTT+TGG | + | chr5_4:11005672-11005691 | Msa0837190:intron | 35.0% |
| GTATCTTATCCAAACCAATC+TGG | - | chr5_4:11005684-11005703 | None:intergenic | 35.0% | |
| TGATTGTACATCACAGATCT+TGG | - | chr5_4:11005763-11005782 | None:intergenic | 35.0% | |
| AGATCTGTGATGTACAATCA+TGG | + | chr5_4:11005763-11005782 | Msa0837190:intron | 35.0% | |
| GATCTGTGATGTACAATCAT+GGG | + | chr5_4:11005764-11005783 | Msa0837190:intron | 35.0% | |
| ! | GTGTAGAGTCTCATGTTTTA+AGG | + | chr5_4:11005797-11005816 | Msa0837190:intron | 35.0% |
| TACGAGACTACTAACTAAAC+AGG | - | chr5_4:11006154-11006173 | None:intergenic | 35.0% | |
| TTCAGTCCAACCATAACATA+AGG | - | chr5_4:11006208-11006227 | None:intergenic | 35.0% | |
| ATGGTTGGACTGAAATGTAA+TGG | + | chr5_4:11006214-11006233 | Msa0837190:intron | 35.0% | |
| ! | CTTCTCATTTAACTTCTCCA+TGG | - | chr5_4:11006342-11006361 | None:intergenic | 35.0% |
| CATGGAGAAGTTAAATGAGA+AGG | + | chr5_4:11006340-11006359 | Msa0837190:intron | 35.0% | |
| AGAAGGTTATCCAGAAAAGA+GGG | + | chr5_4:11006357-11006376 | Msa0837190:intron | 35.0% | |
| ! | ACTTCATTTTCCCTCTTTTC+TGG | - | chr5_4:11006370-11006389 | None:intergenic | 35.0% |
| ! | TGCACAATGTTCTTCAAGTT+GGG | - | chr5_4:11006684-11006703 | None:intergenic | 35.0% |
| TATTTGAACACTGTGGATGT+CGG | + | chr5_4:11006709-11006728 | Msa0837190:intron | 35.0% | |
| GGAATTTGAACTTCTCAACA+AGG | - | chr5_4:11006851-11006870 | None:intergenic | 35.0% | |
| !!! | ATAAAATTTTGGTGACGTCG+AGG | + | chr5_4:11006883-11006902 | Msa0837190:intron | 35.0% |
| !!! | TAAAATTTTGGTGACGTCGA+GGG | + | chr5_4:11006884-11006903 | Msa0837190:intron | 35.0% |
| !!! | AGGGTTGCTTTTAGAAGATT+TGG | + | chr5_4:11006903-11006922 | Msa0837190:intron | 35.0% |
| GATTCAATTGAGCAAAGTGA+TGG | - | chr5_4:11006980-11006999 | None:intergenic | 35.0% | |
| TTCTATGCACAGATAGTGAA+AGG | + | chr5_4:11007438-11007457 | Msa0837190:intron | 35.0% | |
| TGAGAAGTGGCAAAATATGA+AGG | + | chr5_4:11007521-11007540 | Msa0837190:intron | 35.0% | |
| !! | CAATGAAAAAGAGTGCTTCA+TGG | + | chr5_4:11007632-11007651 | Msa0837190:intron | 35.0% |
| !! | AAAAGAGTGCTTCATGGATA+CGG | + | chr5_4:11007638-11007657 | Msa0837190:intron | 35.0% |
| GGTGATTAAATCGTTGTCAA+TGG | - | chr5_4:11007760-11007779 | None:intergenic | 35.0% | |
| AATATTTCCATCAAGGAAGG+GGG | + | chr5_4:11008083-11008102 | Msa0837190:intron | 35.0% | |
| AAATCTTCCATGGCAAATCT+CGG | - | chr5_4:11008435-11008454 | None:intergenic | 35.0% | |
| !!! | AGATTTTTAAGTTGCATGGG+AGG | + | chr5_4:11008449-11008468 | Msa0837190:CDS | 35.0% |
| CTAACCTCAAAATCAGTGAT+TGG | - | chr5_4:11008518-11008537 | None:intergenic | 35.0% | |
| AAATGCATGTCCATGATAAG+AGG | - | chr5_4:11008857-11008876 | None:intergenic | 35.0% | |
| GATACGAAGTACATATGCTT+TGG | + | chr5_4:11008885-11008904 | Msa0837190:intron | 35.0% | |
| ! | TTTTGCATTCATGCTTCTTG+TGG | - | chr5_4:11009037-11009056 | None:intergenic | 35.0% |
| GTGAAAACATCACAAGTCAT+TGG | + | chr5_4:11009081-11009100 | Msa0837190:intron | 35.0% | |
| ATACTGCAATATGTGGTGTA+TGG | + | chr5_4:11009184-11009203 | Msa0837190:intron | 35.0% | |
| GATGAACTCTAAACTCAATG+AGG | - | chr5_4:11009264-11009283 | None:intergenic | 35.0% | |
| ! | AGTTTAGAGTTCATCCTTTC+TGG | + | chr5_4:11009269-11009288 | Msa0837190:CDS | 35.0% |
| ! | CAGTACTTTTGAATCCAGAA+AGG | - | chr5_4:11009286-11009305 | None:intergenic | 35.0% |
| TTGTTGTAGCTGTGAAAGAA+TGG | + | chr5_4:11009336-11009355 | Msa0837190:CDS | 35.0% | |
| !!! | AGGATGAAATGTTTTTGGTG+CGG | - | chr5_4:11009375-11009394 | None:intergenic | 35.0% |
| AGCTCCTAATTAGTAATAGC+AGG | - | chr5_4:11009395-11009414 | None:intergenic | 35.0% | |
| ACATTTGAGAAGGTAAACAC+TGG | - | chr5_4:11009427-11009446 | None:intergenic | 35.0% | |
| ! | TTTTTAATCTGTGCAGCCAA+AGG | + | chr5_4:11009533-11009552 | Msa0837190:intron | 35.0% |
| ! | TGCTTTTCACTATCGAACAT+AGG | + | chr5_4:11009837-11009856 | Msa0837190:intron | 35.0% |
| ! | GCTTTTCACTATCGAACATA+GGG | + | chr5_4:11009838-11009857 | Msa0837190:intron | 35.0% |
| TACCATTTACCTGAAACTAG+AGG | + | chr5_4:11009865-11009884 | Msa0837190:CDS | 35.0% | |
| ACCATTTACCTGAAACTAGA+GGG | + | chr5_4:11009866-11009885 | Msa0837190:CDS | 35.0% | |
| !!! | ACAGCCATTCTTGTTTTGTA+TGG | + | chr5_4:11010113-11010132 | Msa0837190:CDS | 35.0% |
| !! | TTGTTTTGTATGGCTTTCCT+AGG | + | chr5_4:11010123-11010142 | Msa0837190:CDS | 35.0% |
| ! | CTTGCATGATGATGATATCA+GGG | - | chr5_4:11010304-11010323 | None:intergenic | 35.0% |
| ! | TCTTGCATGATGATGATATC+AGG | - | chr5_4:11010305-11010324 | None:intergenic | 35.0% |
| AGAAGGAATCTGTCATATCT+TGG | + | chr5_4:11010410-11010429 | Msa0837190:CDS | 35.0% | |
| ! | GATGATGATGAAGATGAAGA+CGG | - | chr5_4:11010489-11010508 | None:intergenic | 35.0% |
| GGTCAAATGGATATGATCAA+GGG | - | chr5_4:11010679-11010698 | None:intergenic | 35.0% | |
| CTTGATCATATCCATTTGAC+CGG | + | chr5_4:11010678-11010697 | Msa0837190:CDS | 35.0% | |
| ! | ATTTGATTCGAGGAAATGGA+GGG | - | chr5_4:11010795-11010814 | None:intergenic | 35.0% |
| ! | TATTTGATTCGAGGAAATGG+AGG | - | chr5_4:11010796-11010815 | None:intergenic | 35.0% |
| TCGAATCAAATATCAGTCGT+CGG | + | chr5_4:11010804-11010823 | Msa0837190:three_prime_UTR | 35.0% | |
| !! | AATCTGATGGTTGATAGTGT+TGG | + | chr5_4:11010830-11010849 | Msa0837190:three_prime_UTR | 35.0% |
| CAACTGAGTTATTGTTGGAT+AGG | + | chr5_4:11010878-11010897 | Msa0837190:three_prime_UTR | 35.0% | |
| AGTTATTGTTGGATAGGCAA+AGG | + | chr5_4:11010884-11010903 | Msa0837190:three_prime_UTR | 35.0% | |
| GTTATTGTTGGATAGGCAAA+GGG | + | chr5_4:11010885-11010904 | Msa0837190:three_prime_UTR | 35.0% | |
| TGATTCAATACCTCCTACTT+TGG | - | chr5_4:11010976-11010995 | None:intergenic | 35.0% | |
| !! | AGTAGGAGGTATTGAATCAA+AGG | + | chr5_4:11010977-11010996 | Msa0837190:three_prime_UTR | 35.0% |
| !! | TCAATGCTGGTTTCAAGTGT+GGG | - | chr5_4:11005058-11005077 | None:intergenic | 40.0% |
| !! | TTCAATGCTGGTTTCAAGTG+TGG | - | chr5_4:11005059-11005078 | None:intergenic | 40.0% |
| AGCTTCCAAAGTTTCAATGC+TGG | - | chr5_4:11005071-11005090 | None:intergenic | 40.0% | |
| CCATTCATTTCTGCAACCAA+AGG | - | chr5_4:11005100-11005119 | None:intergenic | 40.0% | |
| CCTTTGGTTGCAGAAATGAA+TGG | + | chr5_4:11005097-11005116 | Msa0837190:CDS | 40.0% | |
| AAAGCAAGAAGCTTACTCGA+TGG | + | chr5_4:11005203-11005222 | Msa0837190:CDS | 40.0% | |
| !! | TAAGCTTTCCTTGGTAACGT+GGG | - | chr5_4:11005243-11005262 | None:intergenic | 40.0% |
| !! | TTAAGCTTTCCTTGGTAACG+TGG | - | chr5_4:11005244-11005263 | None:intergenic | 40.0% |
| GAATAGAAGGGATTTGATGG+AGG | + | chr5_4:11005315-11005334 | Msa0837190:CDS | 40.0% | |
| !!! | GAGGTTTTGACTAAGGTGAA+TGG | + | chr5_4:11005334-11005353 | Msa0837190:intron | 40.0% |
| !!! | GTTTCTGTGCTTGTTTTGAC+TGG | + | chr5_4:11005496-11005515 | Msa0837190:intron | 40.0% |
| !!! | TGTGCTTGTTTTGACTGGTT+TGG | + | chr5_4:11005501-11005520 | Msa0837190:intron | 40.0% |
| !!! | GTGCTTGTTTTGACTGGTTT+GGG | + | chr5_4:11005502-11005521 | Msa0837190:intron | 40.0% |
| TGTCTGGATAATTGGCAATG+AGG | + | chr5_4:11006255-11006274 | Msa0837190:intron | 40.0% | |
| GAGAAGGTTATCCAGAAAAG+AGG | + | chr5_4:11006356-11006375 | Msa0837190:intron | 40.0% | |
| !! | CAAGTTGGGAGTTTTTGAGA+CGG | - | chr5_4:11006670-11006689 | None:intergenic | 40.0% |
| CTGCACAATGTTCTTCAAGT+TGG | - | chr5_4:11006685-11006704 | None:intergenic | 40.0% | |
| CAGACACTATTTGAACACTG+TGG | + | chr5_4:11006702-11006721 | Msa0837190:intron | 40.0% | |
| ATTTGAACACTGTGGATGTC+GGG | + | chr5_4:11006710-11006729 | Msa0837190:intron | 40.0% | |
| ACTGCATGATTACGATCAAG+TGG | - | chr5_4:11006948-11006967 | None:intergenic | 40.0% | |
| !! | ATTGAAGAGAAAGCACCTCA+CGG | - | chr5_4:11007037-11007056 | None:intergenic | 40.0% |
| ACAGATAGTGAAAGGCTGTA+AGG | + | chr5_4:11007446-11007465 | Msa0837190:intron | 40.0% | |
| CAGATAGTGAAAGGCTGTAA+GGG | + | chr5_4:11007447-11007466 | Msa0837190:intron | 40.0% | |
| !! | AAAGAGTGCTTCATGGATAC+GGG | + | chr5_4:11007639-11007658 | Msa0837190:intron | 40.0% |
| CTGCATAACTCAGAAGAAGA+TGG | + | chr5_4:11007720-11007739 | Msa0837190:intron | 40.0% | |
| ATATTTCCATCAAGGAAGGG+GGG | + | chr5_4:11008084-11008103 | Msa0837190:intron | 40.0% | |
| GTCTGAATCAGTTAGTCGAA+TGG | - | chr5_4:11008229-11008248 | None:intergenic | 40.0% | |
| CAAAATCAGTGATTGGCAGA+TGG | - | chr5_4:11008511-11008530 | None:intergenic | 40.0% | |
| !!! | TCTGCCAATCACTGATTTTG+AGG | + | chr5_4:11008511-11008530 | Msa0837190:CDS | 40.0% |
| GTAAGGACTATTGCTAGACA+TGG | - | chr5_4:11008714-11008733 | None:intergenic | 40.0% | |
| TTACCATAAGTCCTGCTACA+GGG | + | chr5_4:11008730-11008749 | Msa0837190:CDS | 40.0% | |
| TCTTGCAAACATCGCATCTT+GGG | - | chr5_4:11008766-11008785 | None:intergenic | 40.0% | |
| TTCTTGCAAACATCGCATCT+TGG | - | chr5_4:11008767-11008786 | None:intergenic | 40.0% | |
| !! | TGCTCACTTTTCTTCCTTAC+TGG | + | chr5_4:11009116-11009135 | Msa0837190:intron | 40.0% |
| !! | GCTCACTTTTCTTCCTTACT+GGG | + | chr5_4:11009117-11009136 | Msa0837190:intron | 40.0% |
| TCAGGCAATACTGCAATATG+TGG | + | chr5_4:11009177-11009196 | Msa0837190:intron | 40.0% | |
| AATGAGGCCAGCTGAATTAA+CGG | - | chr5_4:11009248-11009267 | None:intergenic | 40.0% | |
| CTTTCACAGCTACAACAACT+TGG | - | chr5_4:11009334-11009353 | None:intergenic | 40.0% | |
| TTGTAGCTGTGAAAGAATGG+AGG | + | chr5_4:11009339-11009358 | Msa0837190:CDS | 40.0% | |
| TCTAGTATTTCTCGGTAGAG+AGG | - | chr5_4:11009645-11009664 | None:intergenic | 40.0% | |
| ! | TGTCTTTCCACCAAAAGCAT+AGG | - | chr5_4:11009708-11009727 | None:intergenic | 40.0% |
| GGAAAGACAAGCACTAAAAG+AGG | + | chr5_4:11009719-11009738 | Msa0837190:CDS | 40.0% | |
| TGGTTATCATGTCTGTGACT+CGG | - | chr5_4:11010061-11010080 | None:intergenic | 40.0% | |
| CATGCATTATCTCATGAGCT+AGG | - | chr5_4:11010249-11010268 | None:intergenic | 40.0% | |
| CTCATGAGATAATGCATGCA+TGG | + | chr5_4:11010251-11010270 | Msa0837190:CDS | 40.0% | |
| CAGATTCCTTCTTCAACTTC+TGG | - | chr5_4:11010402-11010421 | None:intergenic | 40.0% | |
| GTCATATCTTGGCTCATATG+TGG | + | chr5_4:11010421-11010440 | Msa0837190:CDS | 40.0% | |
| TATCTTGGCTCATATGTGGT+TGG | + | chr5_4:11010425-11010444 | Msa0837190:CDS | 40.0% | |
| ATCTTGGCTCATATGTGGTT+GGG | + | chr5_4:11010426-11010445 | Msa0837190:CDS | 40.0% | |
| TTCGATGATGCAGAAGAAGA+TGG | - | chr5_4:11010519-11010538 | None:intergenic | 40.0% | |
| TTCTTCTGCATCATCGAAGA+AGG | + | chr5_4:11010521-11010540 | Msa0837190:CDS | 40.0% | |
| TCTTCTGCATCATCGAAGAA+GGG | + | chr5_4:11010522-11010541 | Msa0837190:CDS | 40.0% | |
| ! | CTATGGAGATGGATTCAGAT+CGG | + | chr5_4:11010617-11010636 | Msa0837190:CDS | 40.0% |
| ! | TATGGAGATGGATTCAGATC+GGG | + | chr5_4:11010618-11010637 | Msa0837190:CDS | 40.0% |
| TACCAGGCGGTACTTAATTA+TGG | + | chr5_4:11010642-11010661 | Msa0837190:CDS | 40.0% | |
| ACCAGGCGGTACTTAATTAT+GGG | + | chr5_4:11010643-11010662 | Msa0837190:CDS | 40.0% | |
| CGGTCAAATGGATATGATCA+AGG | - | chr5_4:11010680-11010699 | None:intergenic | 40.0% | |
| ATGGAAAAGTTCCGGTCAAA+TGG | - | chr5_4:11010692-11010711 | None:intergenic | 40.0% | |
| !! | GATGAGGCATTGGTTCATAT+GGG | - | chr5_4:11010748-11010767 | None:intergenic | 40.0% |
| !! | AGATGAGGCATTGGTTCATA+TGG | - | chr5_4:11010749-11010768 | None:intergenic | 40.0% |
| TATGAACCAATGCCTCATCT+TGG | + | chr5_4:11010749-11010768 | Msa0837190:three_prime_UTR | 40.0% | |
| ! | TTTGATTCGAGGAAATGGAG+GGG | - | chr5_4:11010794-11010813 | None:intergenic | 40.0% |
| ! | GACGACTGATATTTGATTCG+AGG | - | chr5_4:11010805-11010824 | None:intergenic | 40.0% |
| !! | ATGGCGGATCTATTAAGTGG+AGG | + | chr5_4:11004959-11004978 | Msa0837190:CDS | 45.0% |
| !! | CTATTAAGTGGAGGTGCTGT+TGG | + | chr5_4:11004968-11004987 | Msa0837190:CDS | 45.0% |
| ! | TTTGGAAGCTTTGGCTCCTT+TGG | + | chr5_4:11005081-11005100 | Msa0837190:CDS | 45.0% |
| TCATCCATTCCCATGCATAC+AGG | - | chr5_4:11005436-11005455 | None:intergenic | 45.0% | |
| !!! | CTTGTTTTGACTGGTTTGGG+TGG | + | chr5_4:11005505-11005524 | Msa0837190:intron | 45.0% |
| TCTTGCTAAGAAGCTCTGCT+GGG | + | chr5_4:11005543-11005562 | Msa0837190:intron | 45.0% | |
| TGCTGGGATCCACAAATCAA+AGG | + | chr5_4:11005559-11005578 | Msa0837190:intron | 45.0% | |
| GGATAAGATACGGCTCGATA+AGG | + | chr5_4:11005693-11005712 | Msa0837190:intron | 45.0% | |
| ATGTACAATCATGGGCGTGA+AGG | + | chr5_4:11005772-11005791 | Msa0837190:intron | 45.0% | |
| TGTACAATCATGGGCGTGAA+GGG | + | chr5_4:11005773-11005792 | Msa0837190:intron | 45.0% | |
| AAGTGAAAACCTCGTAGCAG+GGG | - | chr5_4:11005892-11005911 | None:intergenic | 45.0% | |
| CAAGTGAAAACCTCGTAGCA+GGG | - | chr5_4:11005893-11005912 | None:intergenic | 45.0% | |
| ACAAGTGAAAACCTCGTAGC+AGG | - | chr5_4:11005894-11005913 | None:intergenic | 45.0% | |
| GAAAGTCTTCTAGATGGCCA+TGG | + | chr5_4:11006322-11006341 | Msa0837190:intron | 45.0% | |
| TCGGGTTCCTGAGTTTCAAA+CGG | + | chr5_4:11006728-11006747 | Msa0837190:intron | 45.0% | |
| ! | TCGTCATCCGTTTGAAACTC+AGG | - | chr5_4:11006738-11006757 | None:intergenic | 45.0% |
| TGACGATGCCATTAACCGAT+TGG | + | chr5_4:11006752-11006771 | Msa0837190:intron | 45.0% | |
| GACGATGCCATTAACCGATT+GGG | + | chr5_4:11006753-11006772 | Msa0837190:intron | 45.0% | |
| CAGAAGACCCAATCGGTTAA+TGG | - | chr5_4:11006763-11006782 | None:intergenic | 45.0% | |
| GATGTTTGGCCTAACTCAGA+AGG | + | chr5_4:11006825-11006844 | Msa0837190:intron | 45.0% | |
| TCAACAAGGCCTTCTGAGTT+AGG | - | chr5_4:11006837-11006856 | None:intergenic | 45.0% | |
| ATTTGGTACCCCATTCGAGT+TGG | + | chr5_4:11006920-11006939 | Msa0837190:intron | 45.0% | |
| AAGTGGATCCAACTCGAATG+GGG | - | chr5_4:11006931-11006950 | None:intergenic | 45.0% | |
| CAAGTGGATCCAACTCGAAT+GGG | - | chr5_4:11006932-11006951 | None:intergenic | 45.0% | |
| TCAAGTGGATCCAACTCGAA+TGG | - | chr5_4:11006933-11006952 | None:intergenic | 45.0% | |
| TCACGGACAAGATTCCTATC+AGG | - | chr5_4:11007020-11007039 | None:intergenic | 45.0% | |
| TGATAGGAATCTTGTCCGTG+AGG | + | chr5_4:11007019-11007038 | Msa0837190:intron | 45.0% | |
| CAACTGACTAGCAACCTGTT+TGG | + | chr5_4:11007187-11007206 | Msa0837190:intron | 45.0% | |
| GCAATAACCTGAATCACCAG+CGG | - | chr5_4:11007477-11007496 | None:intergenic | 45.0% | |
| ! | CTGGTGATTCAGGTTATTGC+TGG | + | chr5_4:11007477-11007496 | Msa0837190:intron | 45.0% |
| !! | GTAAGCAGCCTTTTGAGAAG+TGG | + | chr5_4:11007508-11007527 | Msa0837190:intron | 45.0% |
| GACTATTTCCTGAAGACCAG+AGG | + | chr5_4:11007661-11007680 | Msa0837190:intron | 45.0% | |
| TCTGAGTTATGCAGTTCTGC+CGG | - | chr5_4:11007714-11007733 | None:intergenic | 45.0% | |
| CTCAGAAGAAGATGGTGCAA+AGG | + | chr5_4:11007728-11007747 | Msa0837190:intron | 45.0% | |
| TTACCCCTGTTGCAACAACA+TGG | + | chr5_4:11008283-11008302 | Msa0837190:intron | 45.0% | |
| GATCCATGTTGTTGCAACAG+GGG | - | chr5_4:11008289-11008308 | None:intergenic | 45.0% | |
| GGATCCATGTTGTTGCAACA+GGG | - | chr5_4:11008290-11008309 | None:intergenic | 45.0% | |
| TGGATCCATGTTGTTGCAAC+AGG | - | chr5_4:11008291-11008310 | None:intergenic | 45.0% | |
| CTGTAGCAGGACTTATGGTA+AGG | - | chr5_4:11008731-11008750 | None:intergenic | 45.0% | |
| CTTACCATAAGTCCTGCTAC+AGG | + | chr5_4:11008729-11008748 | Msa0837190:CDS | 45.0% | |
| ATGAGGCCAGCTGAATTAAC+GGG | - | chr5_4:11009247-11009266 | None:intergenic | 45.0% | |
| ATGTCTCGAGTGTCTTGACT+CGG | + | chr5_4:11009593-11009612 | Msa0837190:CDS | 45.0% | |
| !! | GTGTCTTGACTCGGCAATTA+TGG | + | chr5_4:11009602-11009621 | Msa0837190:CDS | 45.0% |
| GTATTTCTCGGTAGAGAGGT+TGG | - | chr5_4:11009641-11009660 | None:intergenic | 45.0% | |
| ! | GTGGCAAGTTCCTATGCTTT+TGG | + | chr5_4:11009695-11009714 | Msa0837190:CDS | 45.0% |
| ! | GCAAGTTCCTATGCTTTTGG+TGG | + | chr5_4:11009698-11009717 | Msa0837190:CDS | 45.0% |
| ACAAGCACTAAAAGAGGCCA+TGG | + | chr5_4:11009725-11009744 | Msa0837190:CDS | 45.0% | |
| ! | TACGTTCTTTTCTCCCTCCA+TGG | - | chr5_4:11009745-11009764 | None:intergenic | 45.0% |
| ! | GCCCTCTAGTTTCAGGTAAA+TGG | - | chr5_4:11009870-11009889 | None:intergenic | 45.0% |
| AACTAACTGTCACCACCGTA+GGG | + | chr5_4:11009905-11009924 | Msa0837190:intron | 45.0% | |
| TTGGAAGCAAGGAATCCCTA+CGG | - | chr5_4:11009923-11009942 | None:intergenic | 45.0% | |
| ACGGGTCAGTTTATAAGGCT+TGG | - | chr5_4:11010081-11010100 | None:intergenic | 45.0% | |
| CATCGACGGGTCAGTTTATA+AGG | - | chr5_4:11010086-11010105 | None:intergenic | 45.0% | |
| AGATAATGCATGCATGGCTC+AGG | + | chr5_4:11010257-11010276 | Msa0837190:CDS | 45.0% | |
| TTCAACTTCTGGCCTCAAGT+TGG | - | chr5_4:11010391-11010410 | None:intergenic | 45.0% | |
| TTGAGGCCAGAAGTTGAAGA+AGG | + | chr5_4:11010393-11010412 | Msa0837190:CDS | 45.0% | |
| TTGGGATCAGAGCTCTATTC+TGG | + | chr5_4:11010444-11010463 | Msa0837190:CDS | 45.0% | |
| TCAGAGCTCTATTCTGGATC+TGG | + | chr5_4:11010450-11010469 | Msa0837190:CDS | 45.0% | |
| CAGAGCTCTATTCTGGATCT+GGG | + | chr5_4:11010451-11010470 | Msa0837190:CDS | 45.0% | |
| GATGATGCAGAAGAAGATGG+CGG | - | chr5_4:11010516-11010535 | None:intergenic | 45.0% | |
| ! | GTGAGGTATCTGACTCAATC+TGG | - | chr5_4:11010593-11010612 | None:intergenic | 45.0% |
| CGATCTGAATCCATCTCCAT+AGG | - | chr5_4:11010619-11010638 | None:intergenic | 45.0% | |
| CAGTCGTCGGATTAATCTGA+TGG | + | chr5_4:11010817-11010836 | Msa0837190:three_prime_UTR | 45.0% | |
| !! | GGTTGATAGTGTTGGTCTCT+CGG | + | chr5_4:11010838-11010857 | Msa0837190:three_prime_UTR | 45.0% |
| GTTGGATAGGCAAAGGGATT+CGG | + | chr5_4:11010891-11010910 | Msa0837190:three_prime_UTR | 45.0% | |
| !! | TTAAGTGGAGGTGCTGTTGG+AGG | + | chr5_4:11004971-11004990 | Msa0837190:CDS | 50.0% |
| !! | CCTTGGTAACGTGGGAAAGA+AGG | - | chr5_4:11005235-11005254 | None:intergenic | 50.0% |
| CCTTCTTTCCCACGTTACCA+AGG | + | chr5_4:11005232-11005251 | Msa0837190:CDS | 50.0% | |
| TCCTGAAGAGCCTGTATGCA+TGG | + | chr5_4:11005423-11005442 | Msa0837190:intron | 50.0% | |
| CCTGAAGAGCCTGTATGCAT+GGG | + | chr5_4:11005424-11005443 | Msa0837190:intron | 50.0% | |
| AGAGCCTGTATGCATGGGAA+TGG | + | chr5_4:11005429-11005448 | Msa0837190:intron | 50.0% | |
| !! | TTGACTGGTTTGGGTGGATC+TGG | + | chr5_4:11005511-11005530 | Msa0837190:intron | 50.0% |
| GCAGAGCTTCTTAGCAAGAG+TGG | - | chr5_4:11005542-11005561 | None:intergenic | 50.0% | |
| CTCTTGCTAAGAAGCTCTGC+TGG | + | chr5_4:11005542-11005561 | Msa0837190:intron | 50.0% | |
| ACGGCTCGATAAGGTTGAGT+TGG | + | chr5_4:11005702-11005721 | Msa0837190:intron | 50.0% | |
| CGGCTCGATAAGGTTGAGTT+GGG | + | chr5_4:11005703-11005722 | Msa0837190:intron | 50.0% | |
| AGTGAAAACCTCGTAGCAGG+GGG | - | chr5_4:11005891-11005910 | None:intergenic | 50.0% | |
| GTGCTTGTAACAAGTCCGTG+AGG | + | chr5_4:11005941-11005960 | Msa0837190:intron | 50.0% | |
| ACCGATTGGGTCTTCTGTTG+AGG | + | chr5_4:11006766-11006785 | Msa0837190:intron | 50.0% | |
| GCCTCAACAGAAGACCCAAT+CGG | - | chr5_4:11006770-11006789 | None:intergenic | 50.0% | |
| GGTCTTCTGTTGAGGCAAGT+TGG | + | chr5_4:11006774-11006793 | Msa0837190:intron | 50.0% | |
| GCAGCACATACATGCCTGAT+AGG | + | chr5_4:11007003-11007022 | Msa0837190:intron | 50.0% | |
| ! | ACAGGAATCCTCTGGTCTTC+AGG | - | chr5_4:11007672-11007691 | None:intergenic | 50.0% |
| AGATCAATGGGGGCAGTAAC+AGG | - | chr5_4:11007690-11007709 | None:intergenic | 50.0% | |
| AGTTCTGCCGGCAGATCAAT+GGG | - | chr5_4:11007702-11007721 | None:intergenic | 50.0% | |
| ATAAGACCCCCCTTCCTTGA+TGG | - | chr5_4:11008093-11008112 | None:intergenic | 50.0% | |
| TGCAATGCCGAGATTTGCCA+TGG | + | chr5_4:11008425-11008444 | Msa0837190:CDS | 50.0% | |
| !! | TAAGTTGCATGGGAGGTGTC+TGG | + | chr5_4:11008456-11008475 | Msa0837190:CDS | 50.0% |
| CAAGCATGACAGACGAAGCA+TGG | - | chr5_4:11008488-11008507 | None:intergenic | 50.0% | |
| TCTCCCTGTAGCAGGACTTA+TGG | - | chr5_4:11008736-11008755 | None:intergenic | 50.0% | |
| CAGATCCCCGTTAATTCAGC+TGG | + | chr5_4:11009238-11009257 | Msa0837190:intron | 50.0% | |
| TGAGGCCAGCTGAATTAACG+GGG | - | chr5_4:11009246-11009265 | None:intergenic | 50.0% | |
| TGCCCAACTCATGAGCTTGA+CGG | + | chr5_4:11009304-11009323 | Msa0837190:CDS | 50.0% | |
| TGCCGTCAAGCTCATGAGTT+GGG | - | chr5_4:11009309-11009328 | None:intergenic | 50.0% | |
| AGCACTAAAAGAGGCCATGG+AGG | + | chr5_4:11009728-11009747 | Msa0837190:CDS | 50.0% | |
| GCACTAAAAGAGGCCATGGA+GGG | + | chr5_4:11009729-11009748 | Msa0837190:CDS | 50.0% | |
| ! | AAGCAGAGCCCTCTAGTTTC+AGG | - | chr5_4:11009877-11009896 | None:intergenic | 50.0% |
| GAACTAACTGTCACCACCGT+AGG | + | chr5_4:11009904-11009923 | Msa0837190:intron | 50.0% | |
| AGAAGACCAATTATGGGGGC+AGG | + | chr5_4:11010032-11010051 | Msa0837190:CDS | 50.0% | |
| CATGCATGGCTCAGGCTTAA+AGG | + | chr5_4:11010265-11010284 | Msa0837190:CDS | 50.0% | |
| TCAGATACCTCACCAGCCTA+TGG | + | chr5_4:11010600-11010619 | Msa0837190:CDS | 50.0% | |
| CTGAATCCATCTCCATAGGC+TGG | - | chr5_4:11010615-11010634 | None:intergenic | 50.0% | |
| TGGATTCAGATCGGGTTACC+AGG | + | chr5_4:11010626-11010645 | Msa0837190:CDS | 50.0% | |
| ATTCAGATCGGGTTACCAGG+CGG | + | chr5_4:11010629-11010648 | Msa0837190:CDS | 50.0% | |
| ! | GCCCATAATTAAGTACCGCC+TGG | - | chr5_4:11010647-11010666 | None:intergenic | 50.0% |
| ACCAATGCCTCATCTTGGTC+CGG | + | chr5_4:11010754-11010773 | Msa0837190:three_prime_UTR | 50.0% | |
| CCCATGCATACAGGCTCTTC+AGG | - | chr5_4:11005427-11005446 | None:intergenic | 55.0% | |
| GCAGGGGGCTCAACAAATCT+TGG | - | chr5_4:11005876-11005895 | None:intergenic | 55.0% | |
| CACAAGACTAGCGCCCTGTT+TGG | - | chr5_4:11006121-11006140 | None:intergenic | 55.0% | |
| GGGCAGTAACAGGAATCCTC+TGG | - | chr5_4:11007680-11007699 | None:intergenic | 55.0% | |
| TACTGCCCCCATTGATCTGC+CGG | + | chr5_4:11007692-11007711 | Msa0837190:intron | 55.0% | |
| TTCTGCCGGCAGATCAATGG+GGG | - | chr5_4:11007700-11007719 | None:intergenic | 55.0% | |
| GTTCTGCCGGCAGATCAATG+GGG | - | chr5_4:11007701-11007720 | None:intergenic | 55.0% | |
| CAGTTCTGCCGGCAGATCAA+TGG | - | chr5_4:11007703-11007722 | None:intergenic | 55.0% | |
| GCATGACAGACGAAGCATGG+TGG | - | chr5_4:11008485-11008504 | None:intergenic | 55.0% | |
| GTGATGCTTCTCCCTGTAGC+AGG | - | chr5_4:11008744-11008763 | None:intergenic | 55.0% | |
| GTGCCGTCAAGCTCATGAGT+TGG | - | chr5_4:11009310-11009329 | None:intergenic | 55.0% | |
| GAAGCAAGGAATCCCTACGG+TGG | - | chr5_4:11009920-11009939 | None:intergenic | 55.0% | |
| CGGTATCCTGCCCCCATAAT+TGG | - | chr5_4:11010041-11010060 | None:intergenic | 55.0% | |
| ! | TGGCTGTCACTTCGCATCGA+CGG | - | chr5_4:11010100-11010119 | None:intergenic | 55.0% |
| ACCTCACCAGCCTATGGAGA+TGG | + | chr5_4:11010606-11010625 | Msa0837190:CDS | 55.0% | |
| TCCATCTCCATAGGCTGGTG+AGG | - | chr5_4:11010610-11010629 | None:intergenic | 55.0% | |
| TCCGGACCAAGATGAGGCAT+TGG | - | chr5_4:11010758-11010777 | None:intergenic | 55.0% | |
| AATGCCTCATCTTGGTCCGG+AGG | + | chr5_4:11010757-11010776 | Msa0837190:three_prime_UTR | 55.0% | |
| ATGCCTCATCTTGGTCCGGA+GGG | + | chr5_4:11010758-11010777 | Msa0837190:three_prime_UTR | 55.0% | |
| AGGAAATGGAGGGGCTAGAC+AGG | - | chr5_4:11010785-11010804 | None:intergenic | 55.0% | |
| TTGTTGAGCCCCCTGCTACG+AGG | + | chr5_4:11005880-11005899 | Msa0837190:intron | 60.0% | |
| AGGCTGTAAGGGTTCACCGC+TGG | + | chr5_4:11007458-11007477 | Msa0837190:intron | 60.0% | |
| GGGTTCACCGCTGGTGATTC+AGG | + | chr5_4:11007467-11007486 | Msa0837190:intron | 60.0% | |
| ! | GGCTGTCACTTCGCATCGAC+GGG | - | chr5_4:11010099-11010118 | None:intergenic | 60.0% |
| GGTCCCTCCGGACCAAGATG+AGG | - | chr5_4:11010764-11010783 | None:intergenic | 65.0% | |
| AGGGGCTAGACAGGTCCCTC+CGG | - | chr5_4:11010776-11010795 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 11004959 | 11011004 | 11004959 | ID=Msa0837190;Name=Msa0837190 |
| chr5_4 | mRNA | 11004959 | 11011004 | 11004959 | ID=Msa0837190-mRNA-1;Parent=Msa0837190;Name=Msa0837190-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|0.55|0.4|1|0.44|0.7|10|288|511 |
| chr5_4 | exon | 11004959 | 11005348 | 11004959 | ID=Msa0837190-mRNA-1:exon:4822;Parent=Msa0837190-mRNA-1 |
| chr5_4 | exon | 11008247 | 11008257 | 11008247 | ID=Msa0837190-mRNA-1:exon:4823;Parent=Msa0837190-mRNA-1 |
| chr5_4 | exon | 11008391 | 11008532 | 11008391 | ID=Msa0837190-mRNA-1:exon:4824;Parent=Msa0837190-mRNA-1 |
| chr5_4 | exon | 11008707 | 11008790 | 11008707 | ID=Msa0837190-mRNA-1:exon:4825;Parent=Msa0837190-mRNA-1 |
| chr5_4 | exon | 11009241 | 11009360 | 11009241 | ID=Msa0837190-mRNA-1:exon:4826;Parent=Msa0837190-mRNA-1 |
| chr5_4 | exon | 11009549 | 11009761 | 11009549 | ID=Msa0837190-mRNA-1:exon:4827;Parent=Msa0837190-mRNA-1 |
| chr5_4 | exon | 11009859 | 11009921 | 11009859 | ID=Msa0837190-mRNA-1:exon:4828;Parent=Msa0837190-mRNA-1 |
| chr5_4 | exon | 11010026 | 11010144 | 11010026 | ID=Msa0837190-mRNA-1:exon:4829;Parent=Msa0837190-mRNA-1 |
| chr5_4 | exon | 11010228 | 11010286 | 11010228 | ID=Msa0837190-mRNA-1:exon:4830;Parent=Msa0837190-mRNA-1 |
| chr5_4 | exon | 11010382 | 11011004 | 11010382 | ID=Msa0837190-mRNA-1:exon:4831;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11004959 | 11005348 | 11004959 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11008247 | 11008257 | 11008247 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11008391 | 11008532 | 11008391 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11008707 | 11008790 | 11008707 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11009241 | 11009360 | 11009241 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11009549 | 11009761 | 11009549 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11009859 | 11009921 | 11009859 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11010026 | 11010144 | 11010026 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11010228 | 11010286 | 11010228 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | CDS | 11010382 | 11010716 | 11010382 | ID=Msa0837190-mRNA-1:cds;Parent=Msa0837190-mRNA-1 |
| chr5_4 | three_prime_UTR | 11010717 | 11011004 | 11010717 | ID=Msa0837190-mRNA-1:three_prime_utr;Parent=Msa0837190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
