AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0840430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0840430 MtrunA17_Chr5g0409831 76.033 242 28 6 4 228 1 229 6.87e-108 310
Msa0840430 MtrunA17_Chr5g0409841 55.328 244 77 9 4 228 1 231 4.86e-75 226
Msa0840430 MtrunA17_Chr5g0440731 49.648 284 80 9 3 228 16 294 4.60e-72 221
Msa0840430 MtrunA17_Chr5g0440741 48.929 280 83 9 3 228 16 289 2.00e-69 214
Msa0840430 MtrunA17_Chr7g0241761 54.688 64 26 1 95 158 148 208 6.46e-17 78.2
Msa0840430 MtrunA17_Chr1g0162081 43.158 95 47 2 97 191 132 219 1.17e-16 77.0
Msa0840430 MtrunA17_Chr5g0429521 36.765 136 71 5 34 158 69 200 1.77e-16 76.6
Msa0840430 MtrunA17_Chr8g0364731 50.000 66 32 1 97 162 11 75 3.23e-16 73.9
Msa0840430 MtrunA17_Chr1g0210471 38.679 106 55 3 97 196 134 235 3.29e-16 75.1
Msa0840430 MtrunA17_Chr3g0104071 56.250 64 25 1 95 158 155 215 3.67e-16 75.9
Msa0840430 MtrunA17_Chr4g0062741 46.154 78 36 2 97 171 148 222 1.60e-15 73.9
Msa0840430 MtrunA17_Chr8g0365011 49.315 73 36 1 90 162 107 178 3.33e-15 72.8
Msa0840430 MtrunA17_Chr5g0436501 55.738 61 26 1 95 155 133 192 3.49e-15 72.8
Msa0840430 MtrunA17_Chr2g0331031 31.200 125 81 3 66 189 88 208 2.68e-14 70.9
Msa0840430 MtrunA17_Chr6g0488471 50.000 60 27 1 95 154 105 161 1.61e-13 68.2
Msa0840430 MtrunA17_Chr3g0135671 46.552 58 31 0 97 154 101 158 1.81e-13 67.4
Msa0840430 MtrunA17_Chr4g0059701 28.155 206 106 6 9 214 22 185 5.72e-13 66.6
Msa0840430 MtrunA17_Chr8g0389241 51.724 58 24 1 97 154 115 168 1.60e-12 65.5
Msa0840430 MtrunA17_Chr5g0432921 32.857 140 86 4 40 179 69 200 2.17e-12 64.3
Msa0840430 MtrunA17_Chr4g0055931 38.571 70 40 1 97 166 105 171 5.26e-12 64.3
Msa0840430 MtrunA17_Chr1g0192061 44.615 65 35 1 97 161 71 134 4.62e-11 60.1
Msa0840430 MtrunA17_Chr5g0415191 46.377 69 31 2 95 163 110 172 4.80e-11 61.2
Msa0840430 MtrunA17_Chr3g0113121 49.206 63 28 1 97 155 105 167 5.41e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0840430 AT5G23650.1 35.165 182 88 6 40 204 61 229 8.37e-18 81.3
Msa0840430 AT5G58900.1 56.250 64 25 1 95 158 149 209 7.73e-17 77.8
Msa0840430 AT5G01200.1 58.065 62 23 1 97 158 156 214 9.58e-17 77.4
Msa0840430 AT5G08520.1 34.395 157 80 5 26 164 41 192 2.57e-16 76.6
Msa0840430 AT2G38090.1 53.125 64 27 1 95 158 149 209 3.16e-16 76.3
Msa0840430 AT3G10580.2 36.719 128 67 5 40 167 56 169 6.57e-16 74.7
Msa0840430 AT5G04760.1 45.556 90 39 3 92 176 104 188 1.07e-15 73.6
Msa0840430 AT3G10580.1 36.719 128 67 5 40 167 56 169 1.08e-15 74.7
Msa0840430 AT1G49010.1 49.275 69 31 2 97 164 144 209 2.16e-14 71.2
Msa0840430 AT3G11280.2 51.562 64 28 1 95 158 135 195 2.79e-14 70.5
Msa0840430 AT3G11280.1 51.562 64 28 1 95 158 135 195 2.79e-14 70.5
Msa0840430 AT5G05790.2 51.562 64 28 1 95 158 139 199 6.88e-14 69.7
Msa0840430 AT5G05790.1 51.562 64 28 1 95 158 139 199 6.88e-14 69.7
Msa0840430 AT5G61620.1 50.000 62 28 1 95 156 116 174 2.76e-13 68.2
Msa0840430 AT4G09450.1 46.053 76 32 2 88 157 86 158 5.79e-13 65.9
Msa0840430 AT5G56840.1 46.154 65 33 1 95 159 99 161 6.60e-13 66.2
Msa0840430 AT5G47390.1 41.892 74 37 2 97 170 106 173 1.16e-12 66.6
Msa0840430 AT1G19000.2 35.537 121 69 3 76 196 91 202 1.97e-12 65.5
Msa0840430 AT1G19000.1 35.537 121 69 3 76 196 91 202 1.97e-12 65.5
Msa0840430 AT3G10590.1 51.562 64 27 1 97 160 121 180 2.85e-11 61.2
Msa0840430 AT1G70000.1 63.158 38 14 0 97 134 108 145 3.01e-11 62.0
Msa0840430 AT1G70000.2 63.158 38 14 0 97 134 108 145 3.01e-11 62.0

Find 42 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGTGTCATTGTTGTTTA+AGG 0.102533 5_4:+16127623 None:intergenic
GTCATTGTCCTTGTTATTTA+AGG 0.115096 5_4:+16127548 None:intergenic
TTTCTTCTTCTCTATTTCTT+TGG 0.241888 5_4:+16127671 None:intergenic
TCTCTATTTCTTTGGCAGTT+TGG 0.295652 5_4:+16127679 None:intergenic
TTCTCAAGTTTGTTCATATC+AGG 0.295923 5_4:+16127462 None:intergenic
TTTGCTTCATGACTTCCTTC+TGG 0.307695 5_4:+16134385 None:intergenic
TGTCAAGTTTCTCTTGTTGT+TGG 0.325112 5_4:+16134515 None:intergenic
GCGCAACTTGTTTAACTTGT+TGG 0.342312 5_4:-16127436 Msa0840430:CDS
TGTTGGTCCATGCTATTCTC+AGG 0.370831 5_4:+16134532 None:intergenic
GATATGTAGGTCGTTTCTAC+AGG 0.371977 5_4:-16127811 Msa0840430:intron
ATGTTATCATCATTAGAGTT+TGG 0.374150 5_4:+16134457 None:intergenic
AGGCCAACTGATACATTTGT+TGG 0.437602 5_4:+16127511 None:intergenic
CTATTTCTTTGGCAGTTTGG+TGG 0.446999 5_4:+16127682 None:intergenic
TTGGCCTTGCTTTATCCAAT+CGG 0.464369 5_4:-16127495 Msa0840430:CDS
GACACTGATGTCGTTGAGTC+GGG 0.467326 5_4:-16134496 Msa0840430:CDS
GGCCAACTGATACATTTGTT+GGG 0.476834 5_4:+16127512 None:intergenic
GCATGACTAGCAATTTGAGT+TGG 0.487768 5_4:+16127723 None:intergenic
GTTGGTCCATGCTATTCTCA+GGG 0.498294 5_4:+16134533 None:intergenic
AAAGAGAGGGCGTAAGGAAA+GGG 0.530997 5_4:-16134365 Msa0840430:CDS
CAAAGAGAGGGCGTAAGGAA+AGG 0.532803 5_4:-16134366 Msa0840430:CDS
TCAGGAAGTGCAGTACCGAT+TGG 0.538889 5_4:+16127480 None:intergenic
ATATGTAGGTCGTTTCTACA+GGG 0.546671 5_4:-16127810 Msa0840430:intron
TGACACTGATGTCGTTGAGT+CGG 0.546703 5_4:-16134497 Msa0840430:CDS
TTTAAGGTAGCTGTGTCTTG+AGG 0.565081 5_4:+16127564 None:intergenic
TGAAGCAAAGAGAGGGCGTA+AGG 0.567823 5_4:-16134371 Msa0840430:CDS
CACAGCTACCTTAAATAACA+AGG 0.577999 5_4:-16127556 Msa0840430:CDS
AACCCAACAAATGTATCAGT+TGG 0.579773 5_4:-16127514 Msa0840430:CDS
GGCGTAAGGAAAGGGTACAT+TGG 0.585151 5_4:-16134357 Msa0840430:CDS
AAGGTAGCTGTGTCTTGAGG+AGG 0.587982 5_4:+16127567 None:intergenic
TAAGGAAAGGGTACATTGGA+CGG 0.593107 5_4:-16134353 Msa0840430:CDS
GAAAGGGTACATTGGACGGA+AGG 0.614122 5_4:-16134349 Msa0840430:CDS
TTGGTCCATGCTATTCTCAG+GGG 0.618470 5_4:+16134534 None:intergenic
TGGTCCATGCTATTCTCAGG+GGG 0.624422 5_4:+16134535 None:intergenic
ATTAGAGTTTGGAATTGCGA+CGG 0.624770 5_4:+16134468 None:intergenic
ATCATATTGATCTAAATGAG+AGG 0.625540 5_4:-16134573 Msa0840430:CDS
GAAGTCATGAAGCAAAGAGA+GGG 0.628581 5_4:-16134378 Msa0840430:CDS
GGAAGTCATGAAGCAAAGAG+AGG 0.629765 5_4:-16134379 Msa0840430:CDS
CAAGCTGAGTCAGTACCAGA+AGG 0.630435 5_4:-16134400 Msa0840430:intron
ATGTAGGTCGTTTCTACAGG+GGG 0.657825 5_4:-16127808 Msa0840430:intron
TCATTTAGATCAATATGATG+AGG 0.665709 5_4:+16134577 None:intergenic
AGTACCGATTGGATAAAGCA+AGG 0.686649 5_4:+16127491 None:intergenic
TATGTAGGTCGTTTCTACAG+GGG 0.695640 5_4:-16127809 Msa0840430:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAAATTTTTTTT+TGG + chr5_4:16129027-16129046 Msa0840440:intron 0.0%
!! TATACATTATAATTCTATTT+AGG - chr5_4:16127807-16127826 Msa0840430:intron 10.0%
!! ATACATTATAATTCTATTTA+GGG - chr5_4:16127808-16127827 Msa0840430:intron 10.0%
!!! TTGAAATTTTATAAAATTTG+TGG - chr5_4:16127880-16127899 Msa0840430:intron 10.0%
!!! TGAAATTTTATAAAATTTGT+GGG - chr5_4:16127881-16127900 Msa0840430:intron 10.0%
!! TATTTATTATATTCTCTATT+TGG - chr5_4:16127987-16128006 Msa0840430:intron 10.0%
!!! ATATTGATAATATTAATTAG+TGG - chr5_4:16128431-16128450 Msa0840430:intron 10.0%
!!! TATTGATTTTATATGAATTT+GGG + chr5_4:16129291-16129310 Msa0840440:intron 10.0%
!!! TTATTGATTTTATATGAATT+TGG + chr5_4:16129292-16129311 Msa0840440:intron 10.0%
!!! TTAAATTATGTATTTGTTTT+TGG + chr5_4:16130556-16130575 Msa0840440:three_prime_UTR 10.0%
!!! TTTTTTCTTTTTTGAAAAAA+AGG + chr5_4:16130709-16130728 Msa0840440:three_prime_UTR 10.0%
!! TCATTTCTTATTATTAAATT+AGG + chr5_4:16131001-16131020 Msa0840440:three_prime_UTR 10.0%
!! TGATAATAATAAGTTAATAA+TGG + chr5_4:16131785-16131804 Msa0840440:three_prime_UTR 10.0%
!! AAAAAATTATATCATAAAAG+AGG - chr5_4:16132612-16132631 Msa0840430:intron 10.0%
!!! AAATATATTTTTGTTCATAT+AGG - chr5_4:16134117-16134136 Msa0840430:intron 10.0%
!! ATTATAATGTATATATTCCA+AGG + chr5_4:16127800-16127819 None:intergenic 15.0%
!!! GAAATTTTATAAAATTTGTG+GGG - chr5_4:16127882-16127901 Msa0840430:intron 15.0%
!! TAAATATCTCTATAGATAAA+AGG + chr5_4:16128386-16128405 None:intergenic 15.0%
!!! AAATTATTTTTTACATCAGT+TGG - chr5_4:16128761-16128780 Msa0840430:intron 15.0%
!!! TTTTTAATATAAAAGGAAAG+AGG + chr5_4:16129089-16129108 Msa0840440:intron 15.0%
!! TTCATATAAAATCAATAACA+AGG - chr5_4:16129294-16129313 Msa0840430:intron 15.0%
!! TCATATAAAATCAATAACAA+GGG - chr5_4:16129295-16129314 Msa0840430:intron 15.0%
!! TCAAATATTAATTACATGTT+GGG + chr5_4:16129917-16129936 Msa0840440:CDS 15.0%
!!! TTTTCAAAAAAGAAAAAACA+TGG - chr5_4:16130711-16130730 Msa0840430:intron 15.0%
!! TTCTTATTATTAAATTAGGA+GGG + chr5_4:16130997-16131016 Msa0840440:three_prime_UTR 15.0%
!! TTTCTTATTATTAAATTAGG+AGG + chr5_4:16130998-16131017 Msa0840440:three_prime_UTR 15.0%
!!! CTTAATTTTTTTTAATATCG+AGG + chr5_4:16131384-16131403 Msa0840440:three_prime_UTR 15.0%
!! CTCGATATTAAAAAAAATTA+AGG - chr5_4:16131382-16131401 Msa0840430:intron 15.0%
!! AAAAAAATTAAGGATTAAAC+AGG - chr5_4:16131392-16131411 Msa0840430:intron 15.0%
!! AAAAAATTAAGGATTAAACA+GGG - chr5_4:16131393-16131412 Msa0840430:intron 15.0%
!! TTAGAATATCTAGTATATAT+TGG + chr5_4:16131453-16131472 Msa0840440:three_prime_UTR 15.0%
!! AAACTAAAAGTTTACTTTAT+AGG + chr5_4:16131606-16131625 Msa0840440:three_prime_UTR 15.0%
!! AAAAACAAAACCATAATATA+GGG - chr5_4:16131810-16131829 Msa0840430:intron 15.0%
!! TAAAAGAATATAGGAAATAA+AGG + chr5_4:16132110-16132129 Msa0840440:three_prime_UTR 15.0%
!!! TTTATTTCCTATATTCTTTT+AGG - chr5_4:16132109-16132128 Msa0840430:intron 15.0%
!! AATATACATTTAACATCAAA+GGG + chr5_4:16133731-16133750 None:intergenic 15.0%
!! AAATATACATTTAACATCAA+AGG + chr5_4:16133732-16133751 None:intergenic 15.0%
!!! ATAAATAAGGGTATAATAAT+GGG + chr5_4:16133931-16133950 None:intergenic 15.0%
!!! AATAAATAAGGGTATAATAA+TGG + chr5_4:16133932-16133951 None:intergenic 15.0%
!! AAAATGAAGTAACTATATAT+TGG + chr5_4:16134231-16134250 None:intergenic 15.0%
!!! ATTTATATTTTGTGATATGT+AGG - chr5_4:16134273-16134292 Msa0840430:intron 15.0%
!! TAATCCAAATTTGATGAAAT+TGG - chr5_4:16127434-16127453 Msa0840430:CDS 20.0%
!! AAAACCAATTTCATCAAATT+TGG + chr5_4:16127441-16127460 None:intergenic 20.0%
!!! AAATTGGTTTTAAGTTCTTA+TGG - chr5_4:16127450-16127469 Msa0840430:CDS 20.0%
!! TGTAGATTATTCCTATAAAA+GGG + chr5_4:16128291-16128310 None:intergenic 20.0%
!! TTGTAGATTATTCCTATAAA+AGG + chr5_4:16128292-16128311 None:intergenic 20.0%
!! TCTATAGATAAAAGGTAATT+GGG + chr5_4:16128378-16128397 None:intergenic 20.0%
!! AATTTGTAGATAGTGTATTT+AGG - chr5_4:16128489-16128508 Msa0840430:intron 20.0%
!! TCTAAATACTACAAAAAATG+TGG + chr5_4:16128639-16128658 Msa0840440:CDS 20.0%
!!! TCTCTTTAAAATTTAACAAC+AGG - chr5_4:16128920-16128939 Msa0840430:intron 20.0%
!!! CTCTTTAAAATTTAACAACA+GGG - chr5_4:16128921-16128940 Msa0840430:intron 20.0%
!! AATTTGGGAATAAAAATGTT+TGG + chr5_4:16129276-16129295 Msa0840440:intron 20.0%
!! CTCCATATTTAAATTCAAAA+TGG + chr5_4:16129880-16129899 Msa0840440:CDS 20.0%
!! GTCAAATATTAATTACATGT+TGG + chr5_4:16129918-16129937 Msa0840440:CDS 20.0%
!!! AGTCAAAATTTTGGAAAAAA+AGG + chr5_4:16130072-16130091 Msa0840440:three_prime_UTR 20.0%
!!! TTTTTGGAATATTACTTTAG+TGG + chr5_4:16130540-16130559 Msa0840440:three_prime_UTR 20.0%
!! AAAGAAAAAACATGGAAAAA+AGG - chr5_4:16130719-16130738 Msa0840430:intron 20.0%
!! AAGAAAAAACATGGAAAAAA+GGG - chr5_4:16130720-16130739 Msa0840430:intron 20.0%
!!! AAAAAATTACGACCTATTTT+TGG + chr5_4:16130886-16130905 Msa0840440:three_prime_UTR 20.0%
!! TCTTATTATTAAATTAGGAG+GGG + chr5_4:16130996-16131015 Msa0840440:three_prime_UTR 20.0%
!!! TTTTGATTGATTAGTGAAAT+TGG + chr5_4:16131486-16131505 Msa0840440:three_prime_UTR 20.0%
!!! CTATATTATGGTTTTGTTTT+TGG + chr5_4:16131811-16131830 Msa0840440:three_prime_UTR 20.0%
!! CAAAAACAAAACCATAATAT+AGG - chr5_4:16131809-16131828 Msa0840430:intron 20.0%
!!! GCATATATTTATCAAGTTTT+GGG + chr5_4:16132061-16132080 Msa0840440:intron 20.0%
!!! AGCATATATTTATCAAGTTT+TGG + chr5_4:16132062-16132081 Msa0840440:intron 20.0%
!!! TATTACACATTATTTTACGA+AGG - chr5_4:16132338-16132357 Msa0840430:intron 20.0%
!! TTAATGATAACCATTTCATA+TGG + chr5_4:16132541-16132560 Msa0840440:three_prime_UTR 20.0%
!!! ATTGATTTCAAAAAATAGGT+TGG + chr5_4:16132873-16132892 Msa0840440:three_prime_UTR 20.0%
!!! ACTGATTGATTTCAAAAAAT+AGG + chr5_4:16132877-16132896 Msa0840440:three_prime_UTR 20.0%
!!! GACTTTTTTTTAACAACAAA+GGG - chr5_4:16133130-16133149 Msa0840430:intron 20.0%
!! TGTAAATGCTATATACTATT+AGG - chr5_4:16133611-16133630 Msa0840430:intron 20.0%
!! ATATACATTTAACATCAAAG+GGG + chr5_4:16133730-16133749 None:intergenic 20.0%
!! AAAAATAATAAATGCTGCAT+TGG + chr5_4:16133907-16133926 None:intergenic 20.0%
!! GGATGAAATTCAATAAATAA+GGG + chr5_4:16133943-16133962 None:intergenic 20.0%
!! TGGATGAAATTCAATAAATA+AGG + chr5_4:16133944-16133963 None:intergenic 20.0%
!!! TTATGGTTGTTTTTTGTTAC+AGG - chr5_4:16127467-16127486 Msa0840430:CDS 25.0%
!!! TGTTTTTTGTTACAGGAATA+TGG - chr5_4:16127474-16127493 Msa0840430:CDS 25.0%
! TCATTTAGATCAATATGATG+AGG + chr5_4:16127523-16127542 None:intergenic 25.0%
! ATCATATTGATCTAAATGAG+AGG - chr5_4:16127524-16127543 Msa0840430:CDS 25.0%
! ATGTTATCATCATTAGAGTT+TGG + chr5_4:16127643-16127662 None:intergenic 25.0%
! GCAAATTTAATCTTAGAGTA+AGG - chr5_4:16128113-16128132 Msa0840430:intron 25.0%
! CTCTATAGATAAAAGGTAAT+TGG + chr5_4:16128379-16128398 None:intergenic 25.0%
! TGCAAAGTAGACTTATAAAA+AGG - chr5_4:16128531-16128550 Msa0840430:intron 25.0%
! GCAAAGTAGACTTATAAAAA+GGG - chr5_4:16128532-16128551 Msa0840430:intron 25.0%
! GTAATTATGTAATTCTGTTG+TGG + chr5_4:16129246-16129265 Msa0840440:intron 25.0%
!!! ATATCTAGTTCTAGCTATTA+TGG - chr5_4:16129324-16129343 Msa0840430:intron 25.0%
! ATATCATATATACCTTGTTG+TGG - chr5_4:16129690-16129709 Msa0840430:intron 25.0%
! GCAATTACAATTTATGATCA+TGG + chr5_4:16129760-16129779 Msa0840440:intron 25.0%
! AACAAGCTTCTGTTATATAT+AGG - chr5_4:16129824-16129843 Msa0840430:intron 25.0%
!!! CGCCATTTTGAATTTAAATA+TGG - chr5_4:16129875-16129894 Msa0840430:intron 25.0%
! GACTAATTGAATGTAATTAC+AGG + chr5_4:16130050-16130069 Msa0840440:three_prime_UTR 25.0%
!! GTTGATACTAGTCAAAATTT+TGG + chr5_4:16130081-16130100 Msa0840440:three_prime_UTR 25.0%
! CATTGTTCAAAACAAATAAG+AGG - chr5_4:16130141-16130160 Msa0840430:intron 25.0%
! GAAAGATCAGATTTCTATTA+TGG + chr5_4:16130279-16130298 Msa0840440:three_prime_UTR 25.0%
! TGATTTAAACTGTGAATCTT+TGG + chr5_4:16130489-16130508 Msa0840440:three_prime_UTR 25.0%
! TGTGAATTGAAATAACTGTT+AGG - chr5_4:16130639-16130658 Msa0840430:intron 25.0%
! AATCAACTAGAAAAATGTAC+AGG + chr5_4:16130826-16130845 Msa0840440:three_prime_UTR 25.0%
! TGCTAACATTTGTTTATACA+AGG + chr5_4:16130853-16130872 Msa0840440:three_prime_UTR 25.0%
!!! CATGTTAGTTTTCCAAAAAT+AGG - chr5_4:16130871-16130890 Msa0840430:intron 25.0%
! AATGAAAGCAATTATGTTTG+AGG + chr5_4:16130928-16130947 Msa0840440:three_prime_UTR 25.0%
! TCAAACATAATTGCTTTCAT+TGG - chr5_4:16130927-16130946 Msa0840430:intron 25.0%
!!! GTTATGTGTGTATTCTTTTT+TGG + chr5_4:16130974-16130993 Msa0840440:three_prime_UTR 25.0%
! AAAAACATTTGCTTTCTGTT+AGG + chr5_4:16131198-16131217 Msa0840440:three_prime_UTR 25.0%
!! TTGTTAAGTCACTTTCATTA+TGG - chr5_4:16131229-16131248 Msa0840430:intron 25.0%
! ACAATTGCAATTTAAATCCT+TGG + chr5_4:16131347-16131366 Msa0840440:three_prime_UTR 25.0%
!! ATAATGGAGTTATTTGAAGA+TGG + chr5_4:16131769-16131788 Msa0840440:three_prime_UTR 25.0%
!!! TATTATGGTTTTGTTTTTGG+TGG + chr5_4:16131808-16131827 Msa0840440:three_prime_UTR 25.0%
! TTAAATCTGTAATGTTTGCT+TGG + chr5_4:16131848-16131867 Msa0840440:three_prime_UTR 25.0%
! TTACAGATTTAATTCCAACA+AGG - chr5_4:16131856-16131875 Msa0840430:intron 25.0%
!! ATTGAGTTTAGAACTTGAAA+TGG + chr5_4:16131909-16131928 Msa0840440:three_prime_UTR 25.0%
! ATTTAGTTATTGAAAGCCAA+TGG + chr5_4:16131952-16131971 Msa0840440:intron 25.0%
! TAAATATATGCTCAAGTACA+AGG - chr5_4:16132070-16132089 Msa0840430:intron 25.0%
! GTAACAAAAACGGATAATAA+AGG + chr5_4:16132172-16132191 Msa0840440:three_prime_UTR 25.0%
! TAATGTGTAATAACTCTTCA+AGG + chr5_4:16132330-16132349 Msa0840440:three_prime_UTR 25.0%
!! ATAACCATTTCATATGGTTT+TGG + chr5_4:16132535-16132554 Msa0840440:three_prime_UTR 25.0%
!! TTATCATTTGCTAATTGCTA+TGG + chr5_4:16132579-16132598 Msa0840440:three_prime_UTR 25.0%
!! TTATATCATAAAAGAGGTAC+TGG - chr5_4:16132618-16132637 Msa0840430:intron 25.0%
!!! TATATCATAAAAGAGGTACT+GGG - chr5_4:16132619-16132638 Msa0840430:intron 25.0%
! CATCAGAATAAACAAGATTA+TGG - chr5_4:16132656-16132675 Msa0840430:intron 25.0%
!! AATATTATTTTCCTATGCCA+GGG - chr5_4:16132761-16132780 Msa0840430:intron 25.0%
! TTGGTCAGATTTCAAAAAAT+GGG + chr5_4:16132854-16132873 Msa0840440:three_prime_UTR 25.0%
! TATTGTTCCTTATGAATTGT+TGG + chr5_4:16132928-16132947 Msa0840440:three_prime_UTR 25.0%
! TTGTTCAATACTTAGAAAAC+TGG + chr5_4:16133044-16133063 None:intergenic 25.0%
!!! CGACTTTTTTTTAACAACAA+AGG - chr5_4:16133129-16133148 Msa0840430:intron 25.0%
!! TTTTTAACAACAAAGGGATT+AGG - chr5_4:16133136-16133155 Msa0840430:intron 25.0%
!! TTTTAACAACAAAGGGATTA+GGG - chr5_4:16133137-16133156 Msa0840430:intron 25.0%
!! ATGTATATTTTGTAGTAGTG+TGG - chr5_4:16133742-16133761 Msa0840430:intron 25.0%
! TCCACTAACTACAATTAATA+AGG - chr5_4:16133974-16133993 Msa0840430:intron 25.0%
! CCACTAACTACAATTAATAA+GGG - chr5_4:16133975-16133994 Msa0840430:intron 25.0%
!!! ATTGATTGTGTTGATTTCAA+TGG + chr5_4:16134027-16134046 None:intergenic 25.0%
!! CTCTAAATTATTGTCGTTTA+AGG + chr5_4:16134075-16134094 None:intergenic 25.0%
! AAACGACAATAATTTAGAGA+CGG - chr5_4:16134076-16134095 Msa0840430:intron 25.0%
!! TTTCTTCTTCTCTATTTCTT+TGG + chr5_4:16134429-16134448 None:intergenic 25.0%
!!! TTTCATGTTGTTTTTCAAGA+GGG + chr5_4:16134508-16134527 None:intergenic 25.0%
!!! ATTTCATGTTGTTTTTCAAG+AGG + chr5_4:16134509-16134528 None:intergenic 25.0%
! TTTTGTTACAGGAATATGGA+AGG - chr5_4:16127478-16127497 Msa0840430:CDS 30.0%
GTAAGTATTCAATCTATCCT+TGG - chr5_4:16127780-16127799 Msa0840430:CDS 30.0%
AACAAACAGATACAAAGACT+GGG + chr5_4:16127965-16127984 None:intergenic 30.0%
AAACAAACAGATACAAAGAC+TGG + chr5_4:16127966-16127985 None:intergenic 30.0%
!!! TGAGTATCAATTTTGGAGTA+AGG + chr5_4:16128262-16128281 None:intergenic 30.0%
GGAATAATCTACAAAAATCG+AGG - chr5_4:16128298-16128317 Msa0840430:intron 30.0%
AGTAGACTTATAAAAAGGGA+CGG - chr5_4:16128536-16128555 Msa0840430:intron 30.0%
ATTAGCTATGTGATGACAAT+TGG + chr5_4:16128710-16128729 Msa0840440:CDS 30.0%
CACATCATATCACTTTACAT+CGG + chr5_4:16128813-16128832 Msa0840440:CDS 30.0%
!!! GAAATCTTTTTTTCCACATC+AGG - chr5_4:16128872-16128891 Msa0840430:intron 30.0%
!! TTTCACATCAGTTTTATGGT+AGG - chr5_4:16128945-16128964 Msa0840430:intron 30.0%
! GAAGTACACATGTTTAACTT+CGG + chr5_4:16128973-16128992 Msa0840440:intron 30.0%
! TTTTTGGATTTCACATCAGT+GGG + chr5_4:16129011-16129030 Msa0840440:intron 30.0%
!!! TTTTTTGGATTTCACATCAG+TGG + chr5_4:16129012-16129031 Msa0840440:intron 30.0%
ACGTAAAGCTATAACATCTT+TGG - chr5_4:16129176-16129195 Msa0840430:intron 30.0%
CGTAAAGCTATAACATCTTT+GGG - chr5_4:16129177-16129196 Msa0840430:intron 30.0%
GGGAATAAAAATGTTTGGTT+AGG + chr5_4:16129271-16129290 Msa0840440:intron 30.0%
TCAACTGAAAAGAACATACT+TGG - chr5_4:16129367-16129386 Msa0840430:intron 30.0%
GACAAAGGCTAAGAAAATTA+AGG + chr5_4:16129525-16129544 Msa0840440:intron 30.0%
! GAAGAAATCTGTTCTGAATA+AGG + chr5_4:16129552-16129571 Msa0840440:intron 30.0%
ACAGATTTCTTCTCATGATT+AGG - chr5_4:16129560-16129579 Msa0840430:intron 30.0%
TGACAAAGACTACCAATTAT+AGG + chr5_4:16129971-16129990 Msa0840440:CDS 30.0%
AGACAAAACTGCTTATTATG+TGG - chr5_4:16129993-16130012 Msa0840430:intron 30.0%
AACTGCTTATTATGTGGTAT+CGG - chr5_4:16129999-16130018 Msa0840430:intron 30.0%
ATGGAAAAATTATGGGTCAT+TGG + chr5_4:16130193-16130212 Msa0840440:three_prime_UTR 30.0%
!! ATTATGGCTTGTTCTCATAT+TGG + chr5_4:16130263-16130282 Msa0840440:three_prime_UTR 30.0%
!! TATATTTTTGTGTGTGCTCA+TGG + chr5_4:16130380-16130399 Msa0840440:three_prime_UTR 30.0%
!! CTAGAGATAAAGTTTTTGGA+AGG + chr5_4:16130803-16130822 Msa0840440:three_prime_UTR 30.0%
CCTCATATCTATGGAATTAA+AGG + chr5_4:16131095-16131114 Msa0840440:three_prime_UTR 30.0%
CCTTTAATTCCATAGATATG+AGG - chr5_4:16131092-16131111 Msa0840430:intron 30.0%
!!! GTTTTTTTACTGCTTTCTCT+TGG + chr5_4:16131159-16131178 Msa0840440:three_prime_UTR 30.0%
!! AGAAAGCAAATGTTTTTGTG+AGG - chr5_4:16131201-16131220 Msa0840430:intron 30.0%
TGAAGCAAATATAACCTTGT+TGG + chr5_4:16131873-16131892 Msa0840440:three_prime_UTR 30.0%
GGATAATTGAGAATTTGAGA+TGG + chr5_4:16132031-16132050 Msa0840440:intron 30.0%
!!! TATCAAGTTTTGGGTTTGAA+TGG + chr5_4:16132052-16132071 Msa0840440:intron 30.0%
AAAGCAGATGCAAGAATAAT+AGG - chr5_4:16132373-16132392 Msa0840430:intron 30.0%
TACACCAAAACCATATGAAA+TGG - chr5_4:16132528-16132547 Msa0840430:intron 30.0%
TTGCTATGGATAATTGGATA+TGG + chr5_4:16132565-16132584 Msa0840440:three_prime_UTR 30.0%
TGCTAATTGCTATGGATAAT+TGG + chr5_4:16132571-16132590 Msa0840440:three_prime_UTR 30.0%
TCAACAATATACTTCCTCTA+TGG + chr5_4:16132694-16132713 Msa0840440:three_prime_UTR 30.0%
!!! ATCCATTTTTTGTTATGCCA+GGG - chr5_4:16132733-16132752 Msa0840430:intron 30.0%
! CAATATTATTTTCCTATGCC+AGG - chr5_4:16132760-16132779 Msa0840430:intron 30.0%
TAGCATGAAACAGAGTAAAA+TGG - chr5_4:16132816-16132835 Msa0840430:intron 30.0%
GTTGGTCAGATTTCAAAAAA+TGG + chr5_4:16132855-16132874 Msa0840440:three_prime_UTR 30.0%
TAGCATGAAACAGAGTAAAA+TGG - chr5_4:16132816-16132835 Msa0840430:intron 30.0%
! AGTATTGAACAATCAAGAGA+AGG - chr5_4:16133052-16133071 Msa0840430:intron 30.0%
GTATTGAACAATCAAGAGAA+GGG - chr5_4:16133053-16133072 Msa0840430:intron 30.0%
! TTCTTGGATGTGTTTTATGT+TGG - chr5_4:16133456-16133475 Msa0840430:intron 30.0%
! ATGTGTTTTATGTTGGAGAA+AGG - chr5_4:16133463-16133482 Msa0840430:intron 30.0%
! TGTGTTTTATGTTGGAGAAA+GGG - chr5_4:16133464-16133483 Msa0840430:intron 30.0%
!!! GTCTACTTTTTTTACATCAG+TGG + chr5_4:16133525-16133544 None:intergenic 30.0%
GTATATAGCATTTACATCAG+TGG + chr5_4:16133607-16133626 None:intergenic 30.0%
!!! TTTTAGTTTTCACATCAGCA+CGG + chr5_4:16133707-16133726 None:intergenic 30.0%
AAGAGACTATTATTGTGAGA+CGG + chr5_4:16133841-16133860 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG + chr5_4:16133978-16133997 None:intergenic 30.0%
TTGAATATCAGTAAAGTCAG+AGG - chr5_4:16134160-16134179 Msa0840430:intron 30.0%
!! TACTGTGTCATTGTTGTTTA+AGG + chr5_4:16134477-16134496 None:intergenic 30.0%
!! GTCATTGTCCTTGTTATTTA+AGG + chr5_4:16134552-16134571 None:intergenic 30.0%
! TTCTCAAGTTTGTTCATATC+AGG + chr5_4:16134638-16134657 None:intergenic 30.0%
! TGTCAAGTTTCTCTTGTTGT+TGG + chr5_4:16127585-16127604 None:intergenic 35.0%
! ATTAGAGTTTGGAATTGCGA+CGG + chr5_4:16127632-16127651 None:intergenic 35.0%
TATATACTCGTATACCCGTT+TGG - chr5_4:16127911-16127930 Msa0840430:intron 35.0%
ATATACTCGTATACCCGTTT+GGG - chr5_4:16127912-16127931 Msa0840430:intron 35.0%
! ACTTTTCTCCGAATAGAGTA+GGG - chr5_4:16128138-16128157 Msa0840430:intron 35.0%
CTCATCTTCACTCTATACTA+AGG - chr5_4:16128227-16128246 Msa0840430:intron 35.0%
! GACAGAGTGAGTATCAATTT+TGG + chr5_4:16128269-16128288 None:intergenic 35.0%
CGATGTAAAGTGATATGATG+TGG - chr5_4:16128811-16128830 Msa0840430:intron 35.0%
! TGTTCACACCTTTTTACATC+AGG - chr5_4:16128836-16128855 Msa0840430:intron 35.0%
AGTTCGTACCTGATGTAAAA+AGG + chr5_4:16128847-16128866 Msa0840440:CDS 35.0%
! GGGTTTTCACATCAGTTTTA+TGG - chr5_4:16128941-16128960 Msa0840430:intron 35.0%
ATTTCACATCAGTGGGTAAA+AGG + chr5_4:16129004-16129023 Msa0840440:intron 35.0%
CAAGTACTTGATCATGGTAA+TGG + chr5_4:16129481-16129500 Msa0840440:intron 35.0%
GATCAACAAGTACTTGATCA+TGG + chr5_4:16129487-16129506 Msa0840440:intron 35.0%
TCTGAATAAGGTGAAGACAA+AGG + chr5_4:16129540-16129559 Msa0840440:intron 35.0%
TCTTCTCATGATTAGGAGAA+TGG - chr5_4:16129567-16129586 Msa0840430:intron 35.0%
! ATTTTGCATTCAGTGACACT+TGG + chr5_4:16129605-16129624 Msa0840440:CDS 35.0%
TGTTCATAGTCATGTTGAAG+AGG + chr5_4:16129727-16129746 Msa0840440:intron 35.0%
GTTGAGTATATTTGTGTACG+TGG - chr5_4:16129942-16129961 Msa0840430:intron 35.0%
!! TTACAGGTGTCGATATTATG+TGG + chr5_4:16130034-16130053 Msa0840440:three_prime_UTR 35.0%
! TGACCCATAATTTTTCCATC+TGG - chr5_4:16130194-16130213 Msa0840430:intron 35.0%
GGACCAGATGGAAAAATTAT+GGG + chr5_4:16130200-16130219 Msa0840440:three_prime_UTR 35.0%
TGGACCAGATGGAAAAATTA+TGG + chr5_4:16130201-16130220 Msa0840440:three_prime_UTR 35.0%
! ATAATTTTTCCATCTGGTCC+AGG - chr5_4:16130200-16130219 Msa0840430:intron 35.0%
AACCTAATCACATTTAGTCC+TGG + chr5_4:16130221-16130240 Msa0840440:three_prime_UTR 35.0%
AATGAAGAAATTCAGCTCAG+AGG + chr5_4:16130305-16130324 Msa0840440:three_prime_UTR 35.0%
TTGAGCTTGTCAATCAGAAT+AGG - chr5_4:16130323-16130342 Msa0840430:intron 35.0%
CATTGTGAGTTGTAAACCAT+GGG + chr5_4:16130435-16130454 Msa0840440:three_prime_UTR 35.0%
! CAGGCTAGAGATAAAGTTTT+TGG + chr5_4:16130807-16130826 Msa0840440:three_prime_UTR 35.0%
GAAAGCAATTATGTTTGAGG+TGG + chr5_4:16130925-16130944 Msa0840440:three_prime_UTR 35.0%
GTAGTGTATCCTCATATCTA+TGG + chr5_4:16131104-16131123 Msa0840440:three_prime_UTR 35.0%
TGCTCCATGCTTAAATTTCA+AGG - chr5_4:16131319-16131338 Msa0840430:intron 35.0%
CACAGTATAGCCCTATATTA+TGG + chr5_4:16131823-16131842 Msa0840440:three_prime_UTR 35.0%
TTCAGAGCAGTAAAAACCAT+TGG - chr5_4:16131933-16131952 Msa0840430:intron 35.0%
TTTGCATAGATGAAGGTCAT+AGG - chr5_4:16132139-16132158 Msa0840430:intron 35.0%
CAAAAACGGATAATAAAGGC+TGG + chr5_4:16132168-16132187 Msa0840440:three_prime_UTR 35.0%
!!! GATCCATTTTTTGTTATGCC+AGG - chr5_4:16132732-16132751 Msa0840430:intron 35.0%
GAAAATAATATTGTGTGCCC+TGG + chr5_4:16132753-16132772 Msa0840440:three_prime_UTR 35.0%
! CATGCTACACTGATTGATTT+GGG + chr5_4:16132803-16132822 Msa0840440:three_prime_UTR 35.0%
! TCATGCTACACTGATTGATT+TGG + chr5_4:16132804-16132823 Msa0840440:three_prime_UTR 35.0%
TGGAAGTCCAACAATTCATA+AGG - chr5_4:16132918-16132937 Msa0840430:intron 35.0%
AACAATCAAGAGAAGGGATT+AGG - chr5_4:16133059-16133078 Msa0840430:intron 35.0%
ACAATCAAGAGAAGGGATTA+GGG - chr5_4:16133060-16133079 Msa0840430:intron 35.0%
! AGAGTTCCACTGATTGAAAA+GGG - chr5_4:16133100-16133119 Msa0840430:intron 35.0%
! TTAAACCCCTTTTCAATCAG+TGG + chr5_4:16133109-16133128 None:intergenic 35.0%
! TCTCTCTCTGACTTTTCAAT+CGG + chr5_4:16133166-16133185 None:intergenic 35.0%
CAAGAACGATTGATAGAGTT+TGG - chr5_4:16133359-16133378 Msa0840430:intron 35.0%
TTTACGATTAAGAGTGGCTT+TGG - chr5_4:16133402-16133421 Msa0840430:intron 35.0%
GGAATGGATAACATTGTTCT+TGG - chr5_4:16133440-16133459 Msa0840430:intron 35.0%
TTATGTTGGAGAAAGGGATA+AGG - chr5_4:16133470-16133489 Msa0840430:intron 35.0%
AAGGGATAAGGTAAAGAGAA+AGG - chr5_4:16133482-16133501 Msa0840430:intron 35.0%
AGGGATAAGGTAAAGAGAAA+GGG - chr5_4:16133483-16133502 Msa0840430:intron 35.0%
CAGTGGATAACTGAAATGAA+GGG + chr5_4:16133590-16133609 None:intergenic 35.0%
TCAGTGGATAACTGAAATGA+AGG + chr5_4:16133591-16133610 None:intergenic 35.0%
ACATGTGTCTAGGTTTAGAT+TGG + chr5_4:16133783-16133802 None:intergenic 35.0%
AGTTAGTGGAGTAGTTAAGT+TGG + chr5_4:16133964-16133983 None:intergenic 35.0%
GACAATAATTTAGAGACGGA+GGG - chr5_4:16134080-16134099 Msa0840430:intron 35.0%
! TGCAAGTGTTTGCATTGTTT+TGG - chr5_4:16134196-16134215 Msa0840430:intron 35.0%
! GCAAGTGTTTGCATTGTTTT+GGG - chr5_4:16134197-16134216 Msa0840430:intron 35.0%
ATATGTAGGTCGTTTCTACA+GGG - chr5_4:16134287-16134306 Msa0840430:intron 35.0%
! TCTCTATTTCTTTGGCAGTT+TGG + chr5_4:16134421-16134440 None:intergenic 35.0%
CACAGCTACCTTAAATAACA+AGG - chr5_4:16134541-16134560 Msa0840430:CDS 35.0%
AACCCAACAAATGTATCAGT+TGG - chr5_4:16134583-16134602 Msa0840430:CDS 35.0%
TTTGCTTCATGACTTCCTTC+TGG + chr5_4:16127715-16127734 None:intergenic 40.0%
GAAGTCATGAAGCAAAGAGA+GGG - chr5_4:16127719-16127738 Msa0840430:CDS 40.0%
! TAAGGAAAGGGTACATTGGA+CGG - chr5_4:16127744-16127763 Msa0840430:CDS 40.0%
AAACAGATACAAAGACTGGG+AGG + chr5_4:16127962-16127981 None:intergenic 40.0%
! GACTTTTCTCCGAATAGAGT+AGG - chr5_4:16128137-16128156 Msa0840430:intron 40.0%
CAACTCATCCCTACTCTATT+CGG + chr5_4:16128149-16128168 None:intergenic 40.0%
! ACTCACTCTGTCCCTTTTAT+AGG - chr5_4:16128277-16128296 Msa0840430:intron 40.0%
AGACTTATAAAAAGGGACGG+AGG - chr5_4:16128539-16128558 Msa0840430:intron 40.0%
AGCTAATGACTAGACACTCA+AGG - chr5_4:16128723-16128742 Msa0840430:intron 40.0%
GCTAATGACTAGACACTCAA+GGG - chr5_4:16128724-16128743 Msa0840430:intron 40.0%
GTACCACATCAGTGCAATAA+AGG + chr5_4:16128898-16128917 Msa0840440:CDS 40.0%
TGTTGTGGCTATGCTTGATT+GGG + chr5_4:16129231-16129250 Msa0840440:intron 40.0%
! TTGGTGCTTGATGATCTTGT+GGG - chr5_4:16129386-16129405 Msa0840430:intron 40.0%
!! TGATGATGTTGACTTGGATG+AGG + chr5_4:16129431-16129450 Msa0840440:intron 40.0%
TCATCCAAGTCAACATCATC+AGG - chr5_4:16129430-16129449 Msa0840430:intron 40.0%
! TACTCCTGATGATGTTGACT+TGG + chr5_4:16129437-16129456 Msa0840440:intron 40.0%
GAGAACAATGAACCACAACA+AGG + chr5_4:16129705-16129724 Msa0840440:intron 40.0%
TGTACGTGGAGTCCTATAAT+TGG - chr5_4:16129956-16129975 Msa0840430:intron 40.0%
GTCCAGGACTAAATGTGATT+AGG - chr5_4:16130216-16130235 Msa0840430:intron 40.0%
! TTAGGTTGCCAGCATACTTA+TGG - chr5_4:16130234-16130253 Msa0840430:intron 40.0%
!! ATGGCTTGTTCTCATATTGG+TGG + chr5_4:16130260-16130279 Msa0840440:three_prime_UTR 40.0%
ATGTAAGGTGTGGTGTTTGT+GGG + chr5_4:16130349-16130368 Msa0840440:three_prime_UTR 40.0%
GCATTGTGAGTTGTAAACCA+TGG + chr5_4:16130436-16130455 Msa0840440:three_prime_UTR 40.0%
!! ACTGTGAATCTTTGGTGTCA+CGG + chr5_4:16130481-16130500 Msa0840440:three_prime_UTR 40.0%
AGCTGAGGATAACAAGAAAG+TGG - chr5_4:16130743-16130762 Msa0840430:intron 40.0%
GATATGAGGATACACTACAC+AGG - chr5_4:16131106-16131125 Msa0840430:intron 40.0%
TAGTGATTGCATGCTAATGC+AGG - chr5_4:16131286-16131305 Msa0840430:intron 40.0%
GGCTCCTTGAAATTTAAGCA+TGG + chr5_4:16131326-16131345 Msa0840440:three_prime_UTR 40.0%
GCTTAAATTTCAAGGAGCCA+AGG - chr5_4:16131327-16131346 Msa0840430:intron 40.0%
GGTGGGGATTAAGATGAAAA+AGG + chr5_4:16131978-16131997 Msa0840440:intron 40.0%
TGCTGGGCCTAAAAGAATAT+AGG + chr5_4:16132119-16132138 Msa0840440:three_prime_UTR 40.0%
CCTTCATCTATGCAAATGCT+GGG + chr5_4:16132135-16132154 Msa0840440:three_prime_UTR 40.0%
ACCTTCATCTATGCAAATGC+TGG + chr5_4:16132136-16132155 Msa0840440:three_prime_UTR 40.0%
!! TATCCGTTTTTGTTACCGAC+TGG - chr5_4:16132176-16132195 Msa0840430:intron 40.0%
GAACCAGTCGGTAACAAAAA+CGG + chr5_4:16132182-16132201 Msa0840440:three_prime_UTR 40.0%
CTATACTTTGTGGAACCAGT+CGG + chr5_4:16132194-16132213 Msa0840440:intron 40.0%
GAACAGTGACCTATACTTTG+TGG + chr5_4:16132204-16132223 Msa0840440:intron 40.0%
! CTTCTATTTTGCTAGCTGCT+CGG + chr5_4:16132250-16132269 Msa0840440:intron 40.0%
GGTTTCATCATACACCATAG+AGG - chr5_4:16132677-16132696 Msa0840430:intron 40.0%
TGCCCTGGCATAACAAAAAA+TGG + chr5_4:16132738-16132757 Msa0840440:three_prime_UTR 40.0%
GATTACACTATTGTTTGCCC+TGG + chr5_4:16132781-16132800 Msa0840440:three_prime_UTR 40.0%
CAATCAAGAGAAGGGATTAG+GGG - chr5_4:16133061-16133080 Msa0840430:intron 40.0%
AATCAGTGGAACTCTGTACT+TGG + chr5_4:16133095-16133114 None:intergenic 40.0%
! CAGAGTTCCACTGATTGAAA+AGG - chr5_4:16133099-16133118 Msa0840430:intron 40.0%
! GAGTTCCACTGATTGAAAAG+GGG - chr5_4:16133101-16133120 Msa0840430:intron 40.0%
GAAGCTCTCTCTCTCAAAAT+CGG + chr5_4:16133250-16133269 None:intergenic 40.0%
! CGATTGATAGAGTTTGGCTT+TGG - chr5_4:16133365-16133384 Msa0840430:intron 40.0%
!! TGATAGAGTTTGGCTTTGGA+CGG - chr5_4:16133369-16133388 Msa0840430:intron 40.0%
GAGAGGTTTACGATTAAGAG+TGG - chr5_4:16133396-16133415 Msa0840430:intron 40.0%
GGGATAAGGTAAAGAGAAAG+GGG - chr5_4:16133484-16133503 Msa0840430:intron 40.0%
GAAATGAAGGGAAAAACACG+CGG + chr5_4:16133578-16133597 None:intergenic 40.0%
TCAGCACGGAAAATAACTGA+AGG + chr5_4:16133693-16133712 None:intergenic 40.0%
TTTGTAGTAGTGTGGAGAAC+TGG - chr5_4:16133750-16133769 Msa0840430:intron 40.0%
CCTAGACACATGTAGAACAA+CGG - chr5_4:16133790-16133809 Msa0840430:intron 40.0%
GACTATTATTGTGAGACGGA+GGG + chr5_4:16133837-16133856 None:intergenic 40.0%
AGACTATTATTGTGAGACGG+AGG + chr5_4:16133838-16133857 None:intergenic 40.0%
AGGTTTGTGCACGGTTATTA+AGG + chr5_4:16134055-16134074 None:intergenic 40.0%
! TGTCGTTTAAGGTTTGTGCA+CGG + chr5_4:16134064-16134083 None:intergenic 40.0%
CGACAATAATTTAGAGACGG+AGG - chr5_4:16134079-16134098 Msa0840430:intron 40.0%
GATATGTAGGTCGTTTCTAC+AGG - chr5_4:16134286-16134305 Msa0840430:intron 40.0%
TATGTAGGTCGTTTCTACAG+GGG - chr5_4:16134288-16134307 Msa0840430:intron 40.0%
GCATGACTAGCAATTTGAGT+TGG + chr5_4:16134377-16134396 None:intergenic 40.0%
! CTATTTCTTTGGCAGTTTGG+TGG + chr5_4:16134418-16134437 None:intergenic 40.0%
! TTTAAGGTAGCTGTGTCTTG+AGG + chr5_4:16134536-16134555 None:intergenic 40.0%
GGCCAACTGATACATTTGTT+GGG + chr5_4:16134588-16134607 None:intergenic 40.0%
AGGCCAACTGATACATTTGT+TGG + chr5_4:16134589-16134608 None:intergenic 40.0%
!! TTGGCCTTGCTTTATCCAAT+CGG - chr5_4:16134602-16134621 Msa0840430:CDS 40.0%
!! AGTACCGATTGGATAAAGCA+AGG + chr5_4:16134609-16134628 None:intergenic 40.0%
!! GCGCAACTTGTTTAACTTGT+TGG - chr5_4:16134661-16134680 Msa0840430:intron 40.0%
TTGGTCCATGCTATTCTCAG+GGG + chr5_4:16127566-16127585 None:intergenic 45.0%
GTTGGTCCATGCTATTCTCA+GGG + chr5_4:16127567-16127586 None:intergenic 45.0%
TGTTGGTCCATGCTATTCTC+AGG + chr5_4:16127568-16127587 None:intergenic 45.0%
TGACACTGATGTCGTTGAGT+CGG - chr5_4:16127600-16127619 Msa0840430:CDS 45.0%
GGAAGTCATGAAGCAAAGAG+AGG - chr5_4:16127718-16127737 Msa0840430:CDS 45.0%
! AAAGAGAGGGCGTAAGGAAA+GGG - chr5_4:16127732-16127751 Msa0840430:CDS 45.0%
! ATACCCGTTTGGGTTAATCC+TGG - chr5_4:16127922-16127941 Msa0840430:intron 45.0%
! TACCCGTTTGGGTTAATCCT+GGG - chr5_4:16127923-16127942 Msa0840430:intron 45.0%
TGACCCAGGATTAACCCAAA+CGG + chr5_4:16127929-16127948 None:intergenic 45.0%
TACAAAGACTGGGAGGACAT+TGG + chr5_4:16127955-16127974 None:intergenic 45.0%
AATGACTAGACACTCAAGGG+TGG - chr5_4:16128727-16128746 Msa0840430:intron 45.0%
AGTGCAATAAAGGCCTGATG+TGG + chr5_4:16128888-16128907 Msa0840440:CDS 45.0%
! AGGCCTTTATTGCACTGATG+TGG - chr5_4:16128892-16128911 Msa0840430:intron 45.0%
AAAGAGGTCTCAAGCTGATC+TGG + chr5_4:16129073-16129092 Msa0840440:intron 45.0%
GTTGTGGCTATGCTTGATTG+GGG + chr5_4:16129230-16129249 Msa0840440:intron 45.0%
CTGTTGTGGCTATGCTTGAT+TGG + chr5_4:16129232-16129251 Msa0840440:intron 45.0%
!! CTTGGTGCTTGATGATCTTG+TGG - chr5_4:16129385-16129404 Msa0840430:intron 45.0%
! CTTGATGATCTTGTGGGTCT+TGG - chr5_4:16129392-16129411 Msa0840430:intron 45.0%
CTTGGATGAGGATAAGCAAC+TGG + chr5_4:16129419-16129438 Msa0840440:intron 45.0%
ACATTTAGTCCTGGACCAGA+TGG + chr5_4:16130212-16130231 Msa0840440:three_prime_UTR 45.0%
! ATTGGTGGCCATAAGTATGC+TGG + chr5_4:16130245-16130264 Msa0840440:three_prime_UTR 45.0%
GATGTAAGGTGTGGTGTTTG+TGG + chr5_4:16130350-16130369 Msa0840440:three_prime_UTR 45.0%
CTCATGGAAGTCGTGATGTA+AGG + chr5_4:16130364-16130383 Msa0840440:three_prime_UTR 45.0%
AGTTGTAAACCATGGGATGG+TGG + chr5_4:16130428-16130447 Msa0840440:three_prime_UTR 45.0%
GTGAGTTGTAAACCATGGGA+TGG + chr5_4:16130431-16130450 Msa0840440:three_prime_UTR 45.0%
TGAGTTTGTCGAAATTGCGG+TGG + chr5_4:16130458-16130477 Msa0840440:three_prime_UTR 45.0%
CGGTGAGTTTGTCGAAATTG+CGG + chr5_4:16130461-16130480 Msa0840440:three_prime_UTR 45.0%
ACATGGAAAAAAGGGAGCTG+AGG - chr5_4:16130728-16130747 Msa0840430:intron 45.0%
CCCAGCATTTGCATAGATGA+AGG - chr5_4:16132132-16132151 Msa0840430:intron 45.0%
! CGACTGGTTCCACAAAGTAT+AGG - chr5_4:16132192-16132211 Msa0840430:intron 45.0%
! TGCGTTCAAGTTCACCTTCA+AGG - chr5_4:16132224-16132243 Msa0840430:intron 45.0%
ACTATTGTTTGCCCTGGCAT+AGG + chr5_4:16132775-16132794 Msa0840440:three_prime_UTR 45.0%
AAGAGAAGGGATTAGGGGTT+AGG - chr5_4:16133066-16133085 Msa0840430:intron 45.0%
AGAGAAGGGATTAGGGGTTA+GGG - chr5_4:16133067-16133086 Msa0840430:intron 45.0%
CTCTCTCTCTCTCTCTCAAT+CGG + chr5_4:16133209-16133228 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCAAT+CGG + chr5_4:16133209-16133228 None:intergenic 45.0%
AGAGAGAGAGAGACATCACT+TGG - chr5_4:16133301-16133320 Msa0840430:intron 45.0%
AGAGAGAGACATCACTTGGA+CGG - chr5_4:16133305-16133324 Msa0840430:intron 45.0%
!! CGATTAAGAGTGGCTTTGGA+CGG - chr5_4:16133406-16133425 Msa0840430:intron 45.0%
CCGTTGTTCTACATGTGTCT+AGG + chr5_4:16133793-16133812 None:intergenic 45.0%
ATGTAGGTCGTTTCTACAGG+GGG - chr5_4:16134289-16134308 Msa0840430:intron 45.0%
CTACAGGGGGTGAAAAAACA+TGG - chr5_4:16134302-16134321 Msa0840430:intron 45.0%
AGGGGGTGAAAAAACATGGT+AGG - chr5_4:16134306-16134325 Msa0840430:intron 45.0%
GGGGGTGAAAAAACATGGTA+GGG - chr5_4:16134307-16134326 Msa0840430:intron 45.0%
GGGGTGAAAAAACATGGTAG+GGG - chr5_4:16134308-16134327 Msa0840430:intron 45.0%
AAAAACATGGTAGGGGACGT+TGG - chr5_4:16134315-16134334 Msa0840430:intron 45.0%
!!! TTTCTTATTTTTAATATAAA+AGG + chr5_4:16129096-16129115 Msa0840440:intron 5.0%
!! AAAATAAGAAAAAAAAATTA+TGG - chr5_4:16129105-16129124 Msa0840430:intron 5.0%
AGATCCCCCTGAGAATAGCA+TGG - chr5_4:16127558-16127577 Msa0840430:CDS 50.0%
TGGTCCATGCTATTCTCAGG+GGG + chr5_4:16127565-16127584 None:intergenic 50.0%
GACACTGATGTCGTTGAGTC+GGG - chr5_4:16127601-16127620 Msa0840430:CDS 50.0%
CAAGCTGAGTCAGTACCAGA+AGG - chr5_4:16127697-16127716 Msa0840430:CDS 50.0%
! TGAAGCAAAGAGAGGGCGTA+AGG - chr5_4:16127726-16127745 Msa0840430:CDS 50.0%
! CAAAGAGAGGGCGTAAGGAA+AGG - chr5_4:16127731-16127750 Msa0840430:CDS 50.0%
! GGCGTAAGGAAAGGGTACAT+TGG - chr5_4:16127740-16127759 Msa0840430:CDS 50.0%
! GAAAGGGTACATTGGACGGA+AGG - chr5_4:16127748-16127767 Msa0840430:CDS 50.0%
GACCCAGGATTAACCCAAAC+GGG + chr5_4:16127928-16127947 None:intergenic 50.0%
! GTTTGGGTTAATCCTGGGTC+AGG - chr5_4:16127928-16127947 Msa0840430:intron 50.0%
CAACGTATCTGTGTCGTGTC+TGG - chr5_4:16130097-16130116 Msa0840430:intron 50.0%
GGAAGTCGTGATGTAAGGTG+TGG + chr5_4:16130359-16130378 Msa0840440:three_prime_UTR 50.0%
GGAGTGCAAGACATGATAGC+AGG + chr5_4:16130407-16130426 Msa0840440:three_prime_UTR 50.0%
GACCTCTTCATCGCGATGTA+AGG - chr5_4:16130594-16130613 Msa0840430:intron 50.0%
CTCCTTACATCGCGATGAAG+AGG + chr5_4:16130599-16130618 Msa0840440:three_prime_UTR 50.0%
ATCCCCACCCTGCTTTATGA+TGG - chr5_4:16131989-16132008 Msa0840430:intron 50.0%
TCCCCACCCTGCTTTATGAT+GGG - chr5_4:16131990-16132009 Msa0840430:intron 50.0%
ACCCATCATAAAGCAGGGTG+GGG + chr5_4:16131994-16132013 Msa0840440:intron 50.0%
CACCCATCATAAAGCAGGGT+GGG + chr5_4:16131995-16132014 Msa0840440:intron 50.0%
CAGCCACCCATCATAAAGCA+GGG + chr5_4:16131999-16132018 Msa0840440:intron 50.0%
AAGTCAGAGAGAGAGCTCAC+CGG - chr5_4:16133172-16133191 Msa0840430:intron 50.0%
TCAATCGGAAGCTCTCTCTC+CGG + chr5_4:16133194-16133213 None:intergenic 50.0%
TGAGAGAGAGAGAGAGAGCT+TGG - chr5_4:16133211-16133230 Msa0840430:intron 50.0%
AGAGAGAGCTTCGACGATGA+CGG - chr5_4:16133258-16133277 Msa0840430:intron 50.0%
!! TAGAGTTTGGCTTTGGACGG+TGG - chr5_4:16133372-16133391 Msa0840430:intron 50.0%
ATGAAGGGAAAAACACGCGG+TGG + chr5_4:16133575-16133594 None:intergenic 50.0%
AAGGTAGCTGTGTCTTGAGG+AGG + chr5_4:16134533-16134552 None:intergenic 50.0%
!! TCAGGAAGTGCAGTACCGAT+TGG + chr5_4:16134620-16134639 None:intergenic 50.0%
GCATTCAGTGACACTTGGCG+CGG + chr5_4:16129600-16129619 Msa0840440:CDS 55.0%
TCTTGCACTCCACCATCCCA+TGG - chr5_4:16130416-16130435 Msa0840430:intron 55.0%
CCACCCATCATAAAGCAGGG+TGG + chr5_4:16131996-16132015 Msa0840440:intron 55.0%
! CCACCCTGCTTTATGATGGG+TGG - chr5_4:16131993-16132012 Msa0840430:intron 55.0%
CCAGCCACCCATCATAAAGC+AGG + chr5_4:16132000-16132019 Msa0840440:intron 55.0%
!! CCTGCTTTATGATGGGTGGC+TGG - chr5_4:16131997-16132016 Msa0840430:intron 55.0%
CTTTGGACGGTGAGACTGAG+AGG - chr5_4:16133419-16133438 Msa0840430:intron 55.0%
GACGGTGAGACTGAGAGGAA+TGG - chr5_4:16133424-16133443 Msa0840430:intron 55.0%
GAGGACATTGGACCTGACCC+AGG + chr5_4:16127943-16127962 None:intergenic 60.0%
TGCTAGCTGCTCGGCCTTGA+AGG + chr5_4:16132241-16132260 Msa0840440:intron 60.0%
GTCTGCACGTAGTGCTCGTC+TGG - chr5_4:16132471-16132490 Msa0840430:intron 60.0%
! GCTTCGACGATGACGGTGAG+AGG - chr5_4:16133265-16133284 Msa0840430:intron 60.0%
!! TGGCTTTGGACGGTGGTGAG+AGG - chr5_4:16133379-16133398 Msa0840430:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 16127422 16134697 16127422 ID=Msa0840430;Name=Msa0840430
chr5_4 mRNA 16127422 16134697 16127422 ID=Msa0840430-mRNA-1;Parent=Msa0840430;Name=Msa0840430-mRNA-1;_AED=0.04;_eAED=0.14;_QI=0|0|0|0.75|0.33|0.25|4|0|228
chr5_4 exon 16134693 16134697 16134693 ID=Msa0840430-mRNA-1:exon:6959;Parent=Msa0840430-mRNA-1
chr5_4 exon 16134426 16134630 16134426 ID=Msa0840430-mRNA-1:exon:6958;Parent=Msa0840430-mRNA-1
chr5_4 exon 16134336 16134409 16134336 ID=Msa0840430-mRNA-1:exon:6957;Parent=Msa0840430-mRNA-1
chr5_4 exon 16127422 16127824 16127422 ID=Msa0840430-mRNA-1:exon:6956;Parent=Msa0840430-mRNA-1
chr5_4 CDS 16134693 16134697 16134693 ID=Msa0840430-mRNA-1:cds;Parent=Msa0840430-mRNA-1
chr5_4 CDS 16134426 16134630 16134426 ID=Msa0840430-mRNA-1:cds;Parent=Msa0840430-mRNA-1
chr5_4 CDS 16134336 16134409 16134336 ID=Msa0840430-mRNA-1:cds;Parent=Msa0840430-mRNA-1
chr5_4 CDS 16127422 16127824 16127422 ID=Msa0840430-mRNA-1:cds;Parent=Msa0840430-mRNA-1
Gene Sequence

>Msa0840430

ATGATGAATATGGAAGGAAGAAAAGTTCAACAATTACCTCATCATATTGATCTAAATGAGAGGACTTCAATTCAAGATCCCCCTGAGAATAGCATGGACCAACAACAAGAGAAACTTGACACTGATGTCGTTGAGTCGGGTTGTGCCGTCGCAATTCCAAACTCTAATGATGATAACATTGCGACTCTAAACTCTAATGATAATAACTTATACCAGAAGGAAGTCATGAAGCAAAGAGAGGGCGTAAGGAAAGGGTACATTGGACGGAAGGTGAACATAAGTAAGTCGTTTCTACAGGGGGTGAAAAAACATGGTAGGGGACGTTGGAAAGATATTTCAAAAGAATTTGTGCGAACAAAAACTCCAACTCAAATTGCTAGTCATGCTCAAAAATACTTTGTTCACCACCAAACTGCCAAAGAAATAGAGAAGAAGAAAAAGAGAAGAAGTATTCACGACATAACCTTAAACAACAATGACACAGTAGTCACTCTCCCTCTTGAAAAACAACATGAAATTCCTCCTCAAGACACAGCTACCTTAAATAACAAGGACAATGACAACTTGCAACAAACCCAACAAATGTATCAGTTGGCCTTGCTTTATCCAATCGGTACTGCACTTCCTGATATGAACAAACTTGAGAAGATGCGCAACTTGTTTAACTTGTTGGCAAAAGACCTTTGA
Protein sequence

>Msa0840430

MMNMEGRKVQQLPHHIDLNERTSIQDPPENSMDQQQEKLDTDVVESGCAVAIPNSNDDNIATLNSNDNNLYQKEVMKQREGVRKGYIGRKVNISKSFLQGVKKHGRGRWKDISKEFVRTKTPTQIASHAQKYFVHHQTAKEIEKKKKRRSIHDITLNNNDTVVTLPLEKQHEIPPQDTATLNNKDNDNLQQTQQMYQLALLYPIGTALPDMNKLEKMRNLFNLLAKDL*