Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840550 | XP_024641248.2 | 66.667 | 105 | 32 | 1 | 546 | 650 | 640 | 741 | 1.47e-31 | 143 |
| Msa0840550 | XP_024641248.2 | 73.237 | 553 | 136 | 3 | 1 | 549 | 1 | 545 | 0.0 | 822 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840550 | sp|Q9SY66|FRS11_ARATH | 48.649 | 518 | 256 | 3 | 34 | 547 | 28 | 539 | 1.19e-177 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840550 | A0A396JX52 | 66.667 | 105 | 32 | 1 | 546 | 650 | 640 | 741 | 7.00e-32 | 143 |
| Msa0840550 | A0A396JX52 | 73.237 | 553 | 136 | 3 | 1 | 549 | 1 | 545 | 0.0 | 822 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0840550 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840550 | MtrunA17_Chr1g0198761 | 73.237 | 553 | 136 | 3 | 1 | 549 | 1 | 545 | 0.0 | 822 |
| Msa0840550 | MtrunA17_Chr1g0198761 | 66.667 | 105 | 32 | 1 | 546 | 650 | 640 | 741 | 1.35e-35 | 143 |
| Msa0840550 | MtrunA17_Chr5g0431001 | 73.651 | 482 | 117 | 2 | 1 | 472 | 1 | 482 | 0.0 | 730 |
| Msa0840550 | MtrunA17_Chr2g0276841 | 46.961 | 543 | 271 | 4 | 19 | 557 | 42 | 571 | 0.0 | 538 |
| Msa0840550 | MtrunA17_Chr2g0294841 | 45.873 | 521 | 269 | 4 | 34 | 547 | 25 | 539 | 5.56e-162 | 484 |
| Msa0840550 | MtrunA17_Chr2g0290391 | 44.773 | 507 | 252 | 6 | 53 | 545 | 50 | 542 | 8.86e-151 | 453 |
| Msa0840550 | MtrunA17_Chr1g0202341 | 29.803 | 557 | 359 | 10 | 19 | 568 | 20 | 551 | 7.67e-76 | 256 |
| Msa0840550 | MtrunA17_Chr5g0448761 | 30.518 | 521 | 337 | 10 | 54 | 565 | 60 | 564 | 4.38e-70 | 243 |
| Msa0840550 | MtrunA17_Chr3g0080351 | 30.600 | 500 | 291 | 16 | 54 | 534 | 76 | 538 | 3.42e-64 | 228 |
| Msa0840550 | MtrunA17_Chr2g0287651 | 28.846 | 572 | 350 | 15 | 50 | 590 | 74 | 619 | 4.64e-62 | 222 |
| Msa0840550 | MtrunA17_Chr1g0203051 | 27.766 | 479 | 327 | 8 | 66 | 540 | 91 | 554 | 5.92e-62 | 218 |
| Msa0840550 | MtrunA17_Chr5g0441581 | 30.894 | 492 | 302 | 13 | 52 | 534 | 30 | 492 | 6.27e-61 | 216 |
| Msa0840550 | MtrunA17_Chr2g0296781 | 30.833 | 480 | 309 | 10 | 60 | 534 | 3 | 464 | 1.18e-60 | 216 |
| Msa0840550 | MtrunA17_Chr1g0207551 | 29.713 | 488 | 319 | 9 | 54 | 534 | 34 | 504 | 4.17e-56 | 204 |
| Msa0840550 | MtrunA17_Chr6g0458391 | 28.514 | 498 | 324 | 8 | 41 | 535 | 213 | 681 | 5.15e-54 | 198 |
| Msa0840550 | MtrunA17_Chr6g0458391 | 32.800 | 125 | 76 | 2 | 53 | 177 | 90 | 206 | 8.73e-11 | 65.5 |
| Msa0840550 | MtrunA17_Chr6g0477261 | 34.174 | 357 | 226 | 6 | 182 | 534 | 2 | 353 | 4.84e-53 | 194 |
| Msa0840550 | MtrunA17_Chr2g0287061 | 28.169 | 497 | 302 | 13 | 54 | 547 | 183 | 627 | 5.62e-53 | 195 |
| Msa0840550 | MtrunA17_Chr8g0363841 | 28.287 | 502 | 338 | 12 | 55 | 548 | 18 | 505 | 5.78e-53 | 194 |
| Msa0840550 | MtrunA17_Chr2g0329031 | 26.763 | 482 | 322 | 9 | 60 | 534 | 20 | 477 | 5.20e-52 | 192 |
| Msa0840550 | MtrunA17_Chr3g0082121 | 28.916 | 498 | 308 | 15 | 43 | 524 | 32 | 499 | 6.00e-50 | 185 |
| Msa0840550 | MtrunA17_Chr5g0440451 | 25.670 | 522 | 327 | 11 | 54 | 547 | 43 | 531 | 5.56e-49 | 184 |
| Msa0840550 | MtrunA17_Chr1g0196541 | 27.310 | 487 | 317 | 10 | 60 | 534 | 3 | 464 | 1.01e-47 | 179 |
| Msa0840550 | MtrunA17_Chr3g0081281 | 84.946 | 93 | 14 | 0 | 199 | 291 | 1 | 93 | 2.45e-47 | 161 |
| Msa0840550 | MtrunA17_Chr2g0324011 | 26.653 | 499 | 343 | 11 | 46 | 536 | 2 | 485 | 1.98e-46 | 174 |
| Msa0840550 | MtrunA17_Chr1g0203721 | 25.304 | 494 | 338 | 9 | 57 | 537 | 66 | 541 | 6.15e-44 | 169 |
| Msa0840550 | MtrunA17_Chr5g0448511 | 30.769 | 312 | 214 | 2 | 238 | 548 | 15 | 325 | 4.60e-42 | 160 |
| Msa0840550 | MtrunA17_Chr2g0291581 | 24.490 | 490 | 331 | 11 | 54 | 535 | 71 | 529 | 7.42e-41 | 159 |
| Msa0840550 | MtrunA17_Chr3g0118611 | 29.450 | 309 | 214 | 3 | 235 | 542 | 118 | 423 | 8.89e-41 | 159 |
| Msa0840550 | MtrunA17_Chr2g0291591 | 25.247 | 507 | 330 | 13 | 48 | 536 | 58 | 533 | 1.01e-39 | 154 |
| Msa0840550 | MtrunA17_Chr5g0430921 | 77.215 | 79 | 15 | 1 | 572 | 650 | 1 | 76 | 3.48e-36 | 130 |
| Msa0840550 | MtrunA17_Chr1g0164591 | 32.039 | 206 | 138 | 2 | 250 | 454 | 104 | 308 | 1.43e-33 | 131 |
| Msa0840550 | MtrunA17_Chr7g0258861 | 24.746 | 295 | 211 | 5 | 46 | 337 | 2 | 288 | 1.45e-22 | 99.0 |
| Msa0840550 | MtrunA17_Chr1g0171741 | 32.203 | 118 | 68 | 3 | 60 | 174 | 139 | 247 | 1.37e-13 | 71.6 |
| Msa0840550 | MtrunA17_Chr2g0308841 | 27.193 | 114 | 83 | 0 | 408 | 521 | 14 | 127 | 3.96e-11 | 64.3 |
| Msa0840550 | MtrunA17_Chr2g0329421 | 32.174 | 115 | 68 | 3 | 48 | 162 | 23 | 127 | 6.30e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840550 | AT1G10240.2 | 48.649 | 518 | 256 | 3 | 34 | 547 | 28 | 539 | 1.21e-178 | 525 |
| Msa0840550 | AT1G10240.1 | 48.649 | 518 | 256 | 3 | 34 | 547 | 28 | 539 | 1.21e-178 | 525 |
| Msa0840550 | AT5G28530.3 | 43.446 | 534 | 274 | 5 | 25 | 545 | 28 | 546 | 3.02e-150 | 451 |
| Msa0840550 | AT5G28530.2 | 43.446 | 534 | 274 | 5 | 25 | 545 | 28 | 546 | 3.02e-150 | 451 |
| Msa0840550 | AT5G28530.1 | 43.446 | 534 | 278 | 5 | 25 | 545 | 28 | 550 | 1.24e-149 | 450 |
| Msa0840550 | AT5G28530.5 | 38.286 | 525 | 253 | 7 | 25 | 546 | 28 | 484 | 3.36e-114 | 356 |
| Msa0840550 | AT5G28530.4 | 38.286 | 525 | 257 | 7 | 25 | 546 | 28 | 488 | 1.24e-113 | 355 |
| Msa0840550 | AT4G38180.1 | 29.845 | 516 | 345 | 7 | 30 | 542 | 55 | 556 | 1.51e-69 | 242 |
| Msa0840550 | AT4G15090.1 | 29.837 | 553 | 335 | 14 | 37 | 563 | 22 | 547 | 5.27e-68 | 238 |
| Msa0840550 | AT4G15090.5 | 29.837 | 553 | 335 | 14 | 37 | 563 | 22 | 547 | 5.27e-68 | 238 |
| Msa0840550 | AT4G15090.3 | 29.837 | 553 | 335 | 14 | 37 | 563 | 22 | 547 | 5.27e-68 | 238 |
| Msa0840550 | AT4G15090.2 | 29.837 | 553 | 335 | 14 | 37 | 563 | 22 | 547 | 5.27e-68 | 238 |
| Msa0840550 | AT4G15090.4 | 29.837 | 553 | 335 | 14 | 37 | 563 | 22 | 547 | 5.27e-68 | 238 |
| Msa0840550 | AT3G22170.2 | 26.052 | 499 | 316 | 12 | 54 | 534 | 70 | 533 | 2.89e-55 | 202 |
| Msa0840550 | AT3G22170.1 | 26.052 | 499 | 316 | 12 | 54 | 534 | 70 | 533 | 2.89e-55 | 202 |
| Msa0840550 | AT1G76320.2 | 26.654 | 514 | 337 | 10 | 60 | 565 | 3 | 484 | 3.17e-50 | 187 |
| Msa0840550 | AT1G76320.1 | 26.654 | 514 | 337 | 10 | 60 | 565 | 3 | 484 | 3.27e-50 | 187 |
| Msa0840550 | AT1G76320.4 | 26.654 | 514 | 337 | 10 | 60 | 565 | 3 | 484 | 3.27e-50 | 187 |
| Msa0840550 | AT1G76320.3 | 26.654 | 514 | 337 | 10 | 60 | 565 | 3 | 484 | 3.71e-50 | 186 |
| Msa0840550 | AT5G18960.2 | 25.775 | 516 | 318 | 11 | 39 | 547 | 198 | 655 | 3.74e-47 | 179 |
| Msa0840550 | AT5G18960.1 | 25.775 | 516 | 318 | 11 | 39 | 547 | 198 | 655 | 3.74e-47 | 179 |
| Msa0840550 | AT3G06250.2 | 25.299 | 502 | 307 | 10 | 54 | 547 | 190 | 631 | 3.35e-45 | 172 |
| Msa0840550 | AT3G06250.1 | 25.299 | 502 | 307 | 10 | 54 | 547 | 190 | 631 | 3.35e-45 | 172 |
| Msa0840550 | AT3G06250.3 | 25.299 | 502 | 307 | 10 | 54 | 547 | 190 | 631 | 3.35e-45 | 172 |
| Msa0840550 | AT2G27110.2 | 24.696 | 494 | 332 | 8 | 54 | 545 | 49 | 504 | 3.67e-42 | 164 |
| Msa0840550 | AT2G27110.1 | 24.696 | 494 | 332 | 8 | 54 | 545 | 49 | 504 | 3.67e-42 | 164 |
| Msa0840550 | AT1G52520.1 | 25.510 | 490 | 329 | 13 | 54 | 535 | 85 | 546 | 3.31e-41 | 160 |
| Msa0840550 | AT1G80010.1 | 24.157 | 534 | 342 | 15 | 54 | 555 | 95 | 597 | 1.91e-37 | 149 |
| Msa0840550 | AT2G32250.5 | 23.274 | 507 | 325 | 10 | 57 | 560 | 41 | 486 | 2.58e-37 | 149 |
| Msa0840550 | AT2G32250.2 | 23.274 | 507 | 325 | 10 | 57 | 560 | 41 | 486 | 2.78e-37 | 149 |
| Msa0840550 | AT2G32250.4 | 23.274 | 507 | 325 | 10 | 57 | 560 | 41 | 486 | 2.78e-37 | 149 |
| Msa0840550 | AT2G32250.6 | 23.274 | 507 | 325 | 10 | 57 | 560 | 41 | 486 | 2.87e-37 | 149 |
| Msa0840550 | AT2G32250.1 | 23.274 | 507 | 325 | 10 | 57 | 560 | 41 | 486 | 2.87e-37 | 149 |
| Msa0840550 | AT2G32250.3 | 23.274 | 507 | 325 | 10 | 57 | 560 | 41 | 486 | 2.87e-37 | 149 |
| Msa0840550 | AT4G19990.7 | 25.352 | 497 | 306 | 11 | 56 | 534 | 37 | 486 | 3.26e-37 | 149 |
| Msa0840550 | AT4G19990.6 | 25.352 | 497 | 306 | 11 | 56 | 534 | 23 | 472 | 3.30e-37 | 149 |
| Msa0840550 | AT4G19990.2 | 25.352 | 497 | 306 | 11 | 56 | 534 | 23 | 472 | 3.30e-37 | 149 |
| Msa0840550 | AT4G19990.5 | 25.352 | 497 | 306 | 11 | 56 | 534 | 23 | 472 | 3.64e-37 | 149 |
| Msa0840550 | AT2G27110.3 | 27.796 | 313 | 220 | 4 | 235 | 545 | 51 | 359 | 3.89e-37 | 148 |
| Msa0840550 | AT4G19990.3 | 25.352 | 497 | 306 | 11 | 56 | 534 | 23 | 472 | 4.07e-37 | 148 |
| Msa0840550 | AT4G19990.4 | 25.352 | 497 | 306 | 11 | 56 | 534 | 23 | 472 | 4.07e-37 | 148 |
| Msa0840550 | AT2G32250.8 | 23.214 | 504 | 323 | 10 | 60 | 560 | 3 | 445 | 5.38e-37 | 148 |
| Msa0840550 | AT2G32250.7 | 23.214 | 504 | 323 | 10 | 60 | 560 | 3 | 445 | 6.38e-37 | 148 |
| Msa0840550 | AT4G19990.1 | 25.000 | 452 | 289 | 9 | 86 | 534 | 11 | 415 | 6.50e-33 | 135 |
| Msa0840550 | AT4G38170.1 | 27.181 | 298 | 210 | 4 | 238 | 533 | 20 | 312 | 1.34e-30 | 127 |
| Msa0840550 | AT3G59470.3 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 9.57e-14 | 72.0 |
| Msa0840550 | AT3G59470.1 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 9.57e-14 | 72.0 |
| Msa0840550 | AT3G59470.2 | 37.273 | 110 | 61 | 3 | 54 | 163 | 82 | 183 | 1.09e-13 | 72.4 |
Find 101 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATAATTTGATTTATT+TGG | 0.093166 | 5_4:+16327533 | Msa0840550:CDS |
| TCTACTCTCATCATCAATTT+TGG | 0.127832 | 5_4:+16326730 | Msa0840550:CDS |
| TACAGGTAACTTACCATTTC+TGG | 0.139830 | 5_4:+16325958 | Msa0840550:CDS |
| ACATCATAACCATCATTATT+TGG | 0.153794 | 5_4:-16327576 | None:intergenic |
| CTAAAGGCTTTGAAGGAAAA+TGG | 0.187093 | 5_4:+16325756 | Msa0840550:CDS |
| TTCATTCAGATGGGCTTTAA+AGG | 0.197395 | 5_4:+16326312 | Msa0840550:CDS |
| ACAAACTAGAGCATATTATT+TGG | 0.199763 | 5_4:+16326119 | Msa0840550:CDS |
| CGTCCTTGCTTAGACCAAAT+TGG | 0.215592 | 5_4:-16326692 | None:intergenic |
| ATCAAATTATCTTGACTTGC+AGG | 0.274591 | 5_4:-16327525 | None:intergenic |
| GAGCATATTATTTGGGCATT+TGG | 0.276151 | 5_4:+16326127 | Msa0840550:CDS |
| AGTACCATAATTCTCTAATT+AGG | 0.289351 | 5_4:+16327022 | Msa0840550:CDS |
| ACATATGAAGATGATGAATA+TGG | 0.290862 | 5_4:+16325398 | Msa0840550:CDS |
| ATTCGAGCATATGAATCTTT+TGG | 0.301566 | 5_4:+16326157 | Msa0840550:CDS |
| TTGTCCTAATTAGAGAATTA+TGG | 0.303893 | 5_4:-16327026 | None:intergenic |
| TGATTGGTTCCGCCGCAATT+TGG | 0.306685 | 5_4:-16327696 | None:intergenic |
| GTGACAACGTCGAAGCTTCT+TGG | 0.321956 | 5_4:-16327670 | None:intergenic |
| GAATTAATAGTTGCCCAATT+TGG | 0.329503 | 5_4:+16326678 | Msa0840550:CDS |
| AATCATCTATAGATTCTAAA+TGG | 0.332504 | 5_4:-16326641 | None:intergenic |
| TTTGCAGCATGTTCCTCAAT+AGG | 0.334456 | 5_4:-16327054 | None:intergenic |
| GCAGCTTCAACTCCACCTTT+TGG | 0.341287 | 5_4:-16327648 | None:intergenic |
| ACTTTAAACCGGAGTTTCAT+AGG | 0.345415 | 5_4:+16326613 | Msa0840550:CDS |
| AAATTCCTCCGACAGATAAA+AGG | 0.354413 | 5_4:+16327498 | Msa0840550:CDS |
| CTAATATCCTTCTCCAGAAA+TGG | 0.365717 | 5_4:-16325971 | None:intergenic |
| TGCCACTTGGAATGTGGATT+GGG | 0.366378 | 5_4:+16326227 | Msa0840550:CDS |
| CAAACTAGAGCATATTATTT+GGG | 0.370107 | 5_4:+16326120 | Msa0840550:CDS |
| TTGGTTTCTAAAGGCTTTGA+AGG | 0.384106 | 5_4:+16325749 | Msa0840550:CDS |
| TTTGCTGGGATGACGACAAC+TGG | 0.403764 | 5_4:+16326780 | Msa0840550:CDS |
| TTCAAATTAAGAACAATTGT+AGG | 0.405986 | 5_4:-16327909 | None:intergenic |
| GTCCTTGCTTAGACCAAATT+GGG | 0.415207 | 5_4:-16326691 | None:intergenic |
| ATGTAAAAGTCTGAAAGATA+TGG | 0.416400 | 5_4:+16326057 | Msa0840550:CDS |
| TAAAGGCTTTGAAGGAAAAT+GGG | 0.419353 | 5_4:+16325757 | Msa0840550:CDS |
| TTTGGAACATCGGGTGCATT+GGG | 0.427474 | 5_4:-16327558 | None:intergenic |
| AAATACATTGTAAAATTCAT+AGG | 0.433492 | 5_4:-16325528 | None:intergenic |
| TTGGGGCCTAGCTTATTTGA+AGG | 0.438270 | 5_4:+16326749 | Msa0840550:CDS |
| GCAAAGTTGTTGGTTTCTAA+AGG | 0.440350 | 5_4:+16325740 | Msa0840550:CDS |
| CCATCATTATTTGGAACATC+GGG | 0.445060 | 5_4:-16327567 | None:intergenic |
| GAGATATATTGACTTTAAAC+CGG | 0.450625 | 5_4:+16326602 | Msa0840550:CDS |
| ATTTGGAACATCGGGTGCAT+TGG | 0.454988 | 5_4:-16327559 | None:intergenic |
| CCATGAGTTATTAGATGATA+AGG | 0.455510 | 5_4:+16325808 | Msa0840550:CDS |
| GAACTAGTACTGTTGATGAA+TGG | 0.456158 | 5_4:+16325465 | Msa0840550:CDS |
| ACAATTCCGCGAGTCATGAT+TGG | 0.463296 | 5_4:-16327712 | None:intergenic |
| TTGTTGCAAAGTTGTCTAGT+TGG | 0.463573 | 5_4:+16326559 | Msa0840550:CDS |
| AGAAGAAATCTTCATTCAGA+TGG | 0.469575 | 5_4:+16326302 | Msa0840550:CDS |
| AAATATGCTGCCATTCAGAT+AGG | 0.470836 | 5_4:+16327132 | Msa0840550:CDS |
| TAAGAAATAATGCTAGTGAT+TGG | 0.472650 | 5_4:+16325345 | Msa0840550:CDS |
| TTAGAGAAATCAATAGATAC+AGG | 0.477570 | 5_4:+16325941 | Msa0840550:CDS |
| AACTAGTACTGTTGATGAAT+GGG | 0.484545 | 5_4:+16325466 | Msa0840550:CDS |
| TGGATTAACTCAAACGCATA+TGG | 0.491586 | 5_4:-16327087 | None:intergenic |
| AAATCCAAAGGTCGGCCAAA+AGG | 0.496241 | 5_4:+16327618 | Msa0840550:CDS |
| TGGATAGGATCACAAAGGGT+TGG | 0.496334 | 5_4:+16327841 | Msa0840550:intron |
| TAGTTGTAGCGCAAAGTTGT+TGG | 0.498154 | 5_4:+16325730 | Msa0840550:CDS |
| TCTTCAAATGTGCAGTGAGC+TGG | 0.498217 | 5_4:+16327873 | Msa0840550:CDS |
| CCAAAAGGTTCAAGGCCAAA+AGG | 0.499841 | 5_4:+16327633 | Msa0840550:CDS |
| GAGTCTGAAGATAATCCATC+AGG | 0.500480 | 5_4:+16325608 | Msa0840550:CDS |
| ATGCCACTTGGAATGTGGAT+TGG | 0.511770 | 5_4:+16326226 | Msa0840550:CDS |
| ACCATCATTATTTGGAACAT+CGG | 0.512682 | 5_4:-16327568 | None:intergenic |
| TGATCCGTAAGGATTGTTTG+TGG | 0.512910 | 5_4:-16326465 | None:intergenic |
| GAATTTGTTTGTCATCGAGC+TGG | 0.517742 | 5_4:+16325644 | Msa0840550:CDS |
| CTTTAAACCGGAGTTTCATA+GGG | 0.518135 | 5_4:+16326614 | Msa0840550:CDS |
| CCAAGCTGAGGTTCTTGATG+TGG | 0.518896 | 5_4:-16325443 | None:intergenic |
| TGGATTGGGGTTGATAATCA+TGG | 0.518964 | 5_4:+16326241 | Msa0840550:CDS |
| ATATTATTGTTATCAAAAGC+AGG | 0.524397 | 5_4:+16325884 | Msa0840550:CDS |
| ATTTGGCAATTCCTTTGCAA+TGG | 0.524413 | 5_4:-16326508 | None:intergenic |
| CATCTAATAACTCATGGTTG+TGG | 0.528510 | 5_4:-16325802 | None:intergenic |
| TAGACAATTCAATCTCATGT+TGG | 0.528559 | 5_4:-16327107 | None:intergenic |
| CCCGATGTTCCAAATAATGA+TGG | 0.529209 | 5_4:+16327567 | Msa0840550:CDS |
| AAAGGAAACGGAAATCTTCA+CGG | 0.530189 | 5_4:+16325705 | Msa0840550:CDS |
| AAGGTCGGCCAAAAGGTTCA+AGG | 0.530766 | 5_4:+16327625 | Msa0840550:CDS |
| ATAATTGTTACCTATCTGAA+TGG | 0.532788 | 5_4:-16327142 | None:intergenic |
| TAACTTACCATTTCTGGAGA+AGG | 0.534997 | 5_4:+16325964 | Msa0840550:CDS |
| TTCCAAGTGGCATATCATAA+CGG | 0.535191 | 5_4:-16326216 | None:intergenic |
| AATAGTCCTTCAAATAAGCT+AGG | 0.536211 | 5_4:-16326755 | None:intergenic |
| TTCTTGGATAGGATCACAAA+GGG | 0.540933 | 5_4:+16327837 | Msa0840550:intron |
| CCTTATCATCTAATAACTCA+TGG | 0.545462 | 5_4:-16325808 | None:intergenic |
| ATATCCACAAACAATCCTTA+CGG | 0.547845 | 5_4:+16326461 | Msa0840550:CDS |
| AACCGTTATGATATGCCACT+TGG | 0.555362 | 5_4:+16326214 | Msa0840550:CDS |
| CGTTGTCACGTTCCAAATTG+CGG | 0.556435 | 5_4:+16327684 | Msa0840550:CDS |
| GAAGAAATCTTCATTCAGAT+GGG | 0.559436 | 5_4:+16326303 | Msa0840550:CDS |
| ATTGGGATGTTACGATAAGC+GGG | 0.561005 | 5_4:-16325845 | None:intergenic |
| TAGACATCAAGCAGGAGAAG+AGG | 0.565504 | 5_4:+16326984 | Msa0840550:CDS |
| GTCAAAATTAGACATCAAGC+AGG | 0.568777 | 5_4:+16326976 | Msa0840550:CDS |
| TTGTTTCAAAATCCAAAGGT+CGG | 0.583293 | 5_4:+16327610 | Msa0840550:CDS |
| CCTGTTGTTTCAAAATCCAA+AGG | 0.583885 | 5_4:+16327606 | Msa0840550:CDS |
| TGCCCAATTTGGTCTAAGCA+AGG | 0.585288 | 5_4:+16326689 | Msa0840550:CDS |
| TGGTACACCCTATGAAACTC+CGG | 0.585685 | 5_4:-16326621 | None:intergenic |
| AATTGGGATGTTACGATAAG+CGG | 0.587373 | 5_4:-16325846 | None:intergenic |
| CCACATCAAGAACCTCAGCT+TGG | 0.590609 | 5_4:+16325443 | Msa0840550:CDS |
| ATCATTAAAGACAAAAGAGA+GGG | 0.596933 | 5_4:+16327449 | Msa0840550:CDS |
| GTGCAAGATCTTGATCCGTA+AGG | 0.602894 | 5_4:-16326476 | None:intergenic |
| ATGATATGCCACTTGGAATG+TGG | 0.611489 | 5_4:+16326221 | Msa0840550:CDS |
| TGAGTTATTAGATGATAAGG+AGG | 0.622448 | 5_4:+16325811 | Msa0840550:CDS |
| AGGCTTTGAAGGAAAATGGG+TGG | 0.631084 | 5_4:+16325760 | Msa0840550:CDS |
| AAAGGTTCAAGGCCAAAAGG+TGG | 0.631199 | 5_4:+16327636 | Msa0840550:CDS |
| AATCATTAAAGACAAAAGAG+AGG | 0.632966 | 5_4:+16327448 | Msa0840550:CDS |
| GTTCTTGGATAGGATCACAA+AGG | 0.636100 | 5_4:+16327836 | Msa0840550:intron |
| GCCACTTGGAATGTGGATTG+GGG | 0.646236 | 5_4:+16326228 | Msa0840550:CDS |
| ACCCCAATCCACATTCCAAG+TGG | 0.654914 | 5_4:-16326229 | None:intergenic |
| ACTTACAGAAGCCATTGCAA+AGG | 0.657210 | 5_4:+16326497 | Msa0840550:CDS |
| GCGGAACCAATCATGACTCG+CGG | 0.676119 | 5_4:+16327706 | Msa0840550:CDS |
| ACAGTACTAGTTCCAAGCTG+AGG | 0.683821 | 5_4:-16325455 | None:intergenic |
| TGTCACGTTCCAAATTGCGG+CGG | 0.703136 | 5_4:+16327687 | Msa0840550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAACTATTTGATTTTT+TGG | + | chr5_4:16327814-16327833 | Msa0840550:intron | 10.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | - | chr5_4:16325531-16325550 | None:intergenic | 15.0% |
| !!! | TTATTTTAGTAACTTGTTAT+AGG | + | chr5_4:16326887-16326906 | Msa0840550:intron | 15.0% |
| !! | TAATTAATATATTTGTGAGT+AGG | + | chr5_4:16326942-16326961 | Msa0840550:intron | 15.0% |
| !!! | TCAAGATAATTTGATTTATT+TGG | + | chr5_4:16327533-16327552 | Msa0840550:CDS | 15.0% |
| !!! | TCAATATTTTTCTTTTTGTT+TGG | - | chr5_4:16327738-16327757 | None:intergenic | 15.0% |
| !! | TTAAAAATTTGTCCTTCAAA+AGG | - | chr5_4:16325494-16325513 | None:intergenic | 20.0% |
| !! | ATATTATTGTTATCAAAAGC+AGG | + | chr5_4:16325884-16325903 | Msa0840550:CDS | 20.0% |
| !!! | TAATCATTTTTTCATTAGAC+AGG | - | chr5_4:16326370-16326389 | None:intergenic | 20.0% |
| !! | AATCATCTATAGATTCTAAA+TGG | - | chr5_4:16326644-16326663 | None:intergenic | 20.0% |
| !! | CTTAAAAATAAACAATCAGA+AGG | - | chr5_4:16327768-16327787 | None:intergenic | 20.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | + | chr5_4:16325345-16325364 | Msa0840550:CDS | 25.0% |
| ! | ACATATGAAGATGATGAATA+TGG | + | chr5_4:16325398-16325417 | Msa0840550:CDS | 25.0% |
| ! | AATGTATTTGCACGAAAAAA+TGG | + | chr5_4:16325542-16325561 | Msa0840550:CDS | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | + | chr5_4:16325555-16325574 | Msa0840550:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | + | chr5_4:16325687-16325706 | Msa0840550:CDS | 25.0% |
| ! | AAGTGAAAAATCAAAGGAAA+CGG | + | chr5_4:16325693-16325712 | Msa0840550:CDS | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | + | chr5_4:16325941-16325960 | Msa0840550:CDS | 25.0% |
| !! | AATTTTATTCAATCACACAG+TGG | + | chr5_4:16325995-16326014 | Msa0840550:CDS | 25.0% |
| ! | ATGTAAAAGTCTGAAAGATA+TGG | + | chr5_4:16326057-16326076 | Msa0840550:CDS | 25.0% |
| ! | ACAAACTAGAGCATATTATT+TGG | + | chr5_4:16326119-16326138 | Msa0840550:CDS | 25.0% |
| ! | CAAACTAGAGCATATTATTT+GGG | + | chr5_4:16326120-16326139 | Msa0840550:CDS | 25.0% |
| !! | CATGGAAATTCAATTTTCTT+TGG | + | chr5_4:16326259-16326278 | Msa0840550:CDS | 25.0% |
| !! | AGTTTTCTAACTTTTGTTGA+AGG | + | chr5_4:16326435-16326454 | Msa0840550:CDS | 25.0% |
| !! | CAAAATGCATGTTTTGTATT+TGG | - | chr5_4:16326528-16326547 | None:intergenic | 25.0% |
| !!! | GAGATATATTGACTTTAAAC+CGG | + | chr5_4:16326602-16326621 | Msa0840550:CDS | 25.0% |
| !! | GAATCTATAGATGATTTTGA+AGG | + | chr5_4:16326648-16326667 | Msa0840550:CDS | 25.0% |
| !!! | TTTGACTGATTTTGTAAATC+AGG | + | chr5_4:16326857-16326876 | Msa0840550:CDS | 25.0% |
| ! | TAATATATTTGTGAGTAGGT+TGG | + | chr5_4:16326946-16326965 | Msa0840550:intron | 25.0% |
| ! | AGTACCATAATTCTCTAATT+AGG | + | chr5_4:16327022-16327041 | Msa0840550:CDS | 25.0% |
| ! | TTGTCCTAATTAGAGAATTA+TGG | - | chr5_4:16327029-16327048 | None:intergenic | 25.0% |
| ! | ATAATTGTTACCTATCTGAA+TGG | - | chr5_4:16327145-16327164 | None:intergenic | 25.0% |
| !!! | TGTAAAGAATTTGAGTTTTC+TGG | + | chr5_4:16327243-16327262 | Msa0840550:intron | 25.0% |
| !!! | GAAAAGGAAGATATTTTGAT+GGG | - | chr5_4:16327323-16327342 | None:intergenic | 25.0% |
| ! | CATATAGTCAAATGCAATAA+TGG | + | chr5_4:16327381-16327400 | Msa0840550:intron | 25.0% |
| ! | AATCATTAAAGACAAAAGAG+AGG | + | chr5_4:16327448-16327467 | Msa0840550:CDS | 25.0% |
| ! | ATCATTAAAGACAAAAGAGA+GGG | + | chr5_4:16327449-16327468 | Msa0840550:CDS | 25.0% |
| ! | ACATCATAACCATCATTATT+TGG | - | chr5_4:16327579-16327598 | None:intergenic | 25.0% |
| !!! | CTATTTGATTTTTTGGTTCT+TGG | + | chr5_4:16327821-16327840 | Msa0840550:intron | 25.0% |
| ! | AACTAGTACTGTTGATGAAT+GGG | + | chr5_4:16325466-16325485 | Msa0840550:CDS | 30.0% |
| ! | TCTCTTTTATAAACTCCTGA+TGG | - | chr5_4:16325626-16325645 | None:intergenic | 30.0% |
| !! | TAAAGGCTTTGAAGGAAAAT+GGG | + | chr5_4:16325757-16325776 | Msa0840550:CDS | 30.0% |
| CCTTATCATCTAATAACTCA+TGG | - | chr5_4:16325811-16325830 | None:intergenic | 30.0% | |
| CCATGAGTTATTAGATGATA+AGG | + | chr5_4:16325808-16325827 | Msa0840550:CDS | 30.0% | |
| TGAGTTATTAGATGATAAGG+AGG | + | chr5_4:16325811-16325830 | Msa0840550:CDS | 30.0% | |
| !! | TACGATTTTGATCGTCAATT+GGG | - | chr5_4:16325865-16325884 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | - | chr5_4:16325866-16325885 | None:intergenic | 30.0% |
| ! | ATTCGAGCATATGAATCTTT+TGG | + | chr5_4:16326157-16326176 | Msa0840550:CDS | 30.0% |
| !!! | ATATGAATCTTTTGGTGATG+TGG | + | chr5_4:16326165-16326184 | Msa0840550:CDS | 30.0% |
| AGAAGAAATCTTCATTCAGA+TGG | + | chr5_4:16326302-16326321 | Msa0840550:CDS | 30.0% | |
| GAAGAAATCTTCATTCAGAT+GGG | + | chr5_4:16326303-16326322 | Msa0840550:CDS | 30.0% | |
| ATATCCACAAACAATCCTTA+CGG | + | chr5_4:16326461-16326480 | Msa0840550:CDS | 30.0% | |
| ! | CAAAACATGCATTTTGCATA+TGG | + | chr5_4:16326532-16326551 | Msa0840550:CDS | 30.0% |
| !!! | TAGTTGGTTTTCTTTTCAGT+TGG | + | chr5_4:16326575-16326594 | Msa0840550:CDS | 30.0% |
| !!! | AGTTGGTTTTCTTTTCAGTT+GGG | + | chr5_4:16326576-16326595 | Msa0840550:CDS | 30.0% |
| !! | TAGATGATTTTGAAGGAGAA+TGG | + | chr5_4:16326655-16326674 | Msa0840550:CDS | 30.0% |
| !! | AGATGATTTTGAAGGAGAAT+GGG | + | chr5_4:16326656-16326675 | Msa0840550:CDS | 30.0% |
| GAATTAATAGTTGCCCAATT+TGG | + | chr5_4:16326678-16326697 | Msa0840550:CDS | 30.0% | |
| ! | TCTACTCTCATCATCAATTT+TGG | + | chr5_4:16326730-16326749 | Msa0840550:CDS | 30.0% |
| ! | CTACTCTCATCATCAATTTT+GGG | + | chr5_4:16326731-16326750 | Msa0840550:CDS | 30.0% |
| ! | TACTCTCATCATCAATTTTG+GGG | + | chr5_4:16326732-16326751 | Msa0840550:CDS | 30.0% |
| AATAGTCCTTCAAATAAGCT+AGG | - | chr5_4:16326758-16326777 | None:intergenic | 30.0% | |
| !!! | TTGAAGGACTATTTTTTTGC+TGG | + | chr5_4:16326765-16326784 | Msa0840550:CDS | 30.0% |
| !!! | TGAAGGACTATTTTTTTGCT+GGG | + | chr5_4:16326766-16326785 | Msa0840550:CDS | 30.0% |
| ! | GTTATAGGTACGTTGTATTT+TGG | + | chr5_4:16326902-16326921 | Msa0840550:intron | 30.0% |
| TAGACAATTCAATCTCATGT+TGG | - | chr5_4:16327110-16327129 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr5_4:16327324-16327343 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | + | chr5_4:16327325-16327344 | Msa0840550:intron | 30.0% |
| ! | TGACTATATGACTGCATTTT+AGG | - | chr5_4:16327371-16327390 | None:intergenic | 30.0% |
| TCAGTCTCTAATTTGATGTT+TGG | + | chr5_4:16327419-16327438 | Msa0840550:intron | 30.0% | |
| !! | ATCAAATTATCTTGACTTGC+AGG | - | chr5_4:16327528-16327547 | None:intergenic | 30.0% |
| ! | ACCATCATTATTTGGAACAT+CGG | - | chr5_4:16327571-16327590 | None:intergenic | 30.0% |
| TTGTTTCAAAATCCAAAGGT+CGG | + | chr5_4:16327610-16327629 | Msa0840550:CDS | 30.0% | |
| !!! | TGATTTTTTGGTTCTTGGAT+AGG | + | chr5_4:16327826-16327845 | Msa0840550:intron | 30.0% |
| ! | GAACTAGTACTGTTGATGAA+TGG | + | chr5_4:16325465-16325484 | Msa0840550:CDS | 35.0% |
| AAAGGAAACGGAAATCTTCA+CGG | + | chr5_4:16325705-16325724 | Msa0840550:CDS | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | + | chr5_4:16325740-16325759 | Msa0840550:CDS | 35.0% |
| ! | TTGGTTTCTAAAGGCTTTGA+AGG | + | chr5_4:16325749-16325768 | Msa0840550:CDS | 35.0% |
| !! | CTAAAGGCTTTGAAGGAAAA+TGG | + | chr5_4:16325756-16325775 | Msa0840550:CDS | 35.0% |
| CATCTAATAACTCATGGTTG+TGG | - | chr5_4:16325805-16325824 | None:intergenic | 35.0% | |
| AATTGGGATGTTACGATAAG+CGG | - | chr5_4:16325849-16325868 | None:intergenic | 35.0% | |
| TACAGGTAACTTACCATTTC+TGG | + | chr5_4:16325958-16325977 | Msa0840550:CDS | 35.0% | |
| ! | TAACTTACCATTTCTGGAGA+AGG | + | chr5_4:16325964-16325983 | Msa0840550:CDS | 35.0% |
| CTAATATCCTTCTCCAGAAA+TGG | - | chr5_4:16325974-16325993 | None:intergenic | 35.0% | |
| GAGCATATTATTTGGGCATT+TGG | + | chr5_4:16326127-16326146 | Msa0840550:CDS | 35.0% | |
| TTCCAAGTGGCATATCATAA+CGG | - | chr5_4:16326219-16326238 | None:intergenic | 35.0% | |
| ! | TTCATTCAGATGGGCTTTAA+AGG | + | chr5_4:16326312-16326331 | Msa0840550:CDS | 35.0% |
| ATTTGGCAATTCCTTTGCAA+TGG | - | chr5_4:16326511-16326530 | None:intergenic | 35.0% | |
| TTGTTGCAAAGTTGTCTAGT+TGG | + | chr5_4:16326559-16326578 | Msa0840550:CDS | 35.0% | |
| ACTTTAAACCGGAGTTTCAT+AGG | + | chr5_4:16326613-16326632 | Msa0840550:CDS | 35.0% | |
| CTTTAAACCGGAGTTTCATA+GGG | + | chr5_4:16326614-16326633 | Msa0840550:CDS | 35.0% | |
| GTCAAAATTAGACATCAAGC+AGG | + | chr5_4:16326976-16326995 | Msa0840550:CDS | 35.0% | |
| ! | TAGGACAACTTTTCCTATTG+AGG | + | chr5_4:16327041-16327060 | Msa0840550:CDS | 35.0% |
| TGGATTAACTCAAACGCATA+TGG | - | chr5_4:16327090-16327109 | None:intergenic | 35.0% | |
| AAATATGCTGCCATTCAGAT+AGG | + | chr5_4:16327132-16327151 | Msa0840550:CDS | 35.0% | |
| ! | TTTTACAAGTAGCACTCGAA+TGG | - | chr5_4:16327286-16327305 | None:intergenic | 35.0% |
| AAATTCCTCCGACAGATAAA+AGG | + | chr5_4:16327498-16327517 | Msa0840550:CDS | 35.0% | |
| ! | CCATCATTATTTGGAACATC+GGG | - | chr5_4:16327570-16327589 | None:intergenic | 35.0% |
| !!! | CCTTTGGATTTTGAAACAAC+AGG | - | chr5_4:16327609-16327628 | None:intergenic | 35.0% |
| !! | CCTGTTGTTTCAAAATCCAA+AGG | + | chr5_4:16327606-16327625 | Msa0840550:CDS | 35.0% |
| TTCTTGGATAGGATCACAAA+GGG | + | chr5_4:16327837-16327856 | Msa0840550:intron | 35.0% | |
| ! | CAATTGTAGGCATTTTCTTC+TGG | - | chr5_4:16327899-16327918 | None:intergenic | 35.0% |
| !! | GATGAATGGGTTCCTTTTGA+AGG | + | chr5_4:16325479-16325498 | Msa0840550:CDS | 40.0% |
| GAGTCTGAAGATAATCCATC+AGG | + | chr5_4:16325608-16325627 | Msa0840550:CDS | 40.0% | |
| ! | GAATTTGTTTGTCATCGAGC+TGG | + | chr5_4:16325644-16325663 | Msa0840550:CDS | 40.0% |
| TAGTTGTAGCGCAAAGTTGT+TGG | + | chr5_4:16325730-16325749 | Msa0840550:CDS | 40.0% | |
| ATTGGGATGTTACGATAAGC+GGG | - | chr5_4:16325848-16325867 | None:intergenic | 40.0% | |
| AACCGTTATGATATGCCACT+TGG | + | chr5_4:16326214-16326233 | Msa0840550:CDS | 40.0% | |
| ! | ATGATATGCCACTTGGAATG+TGG | + | chr5_4:16326221-16326240 | Msa0840550:CDS | 40.0% |
| !! | TGGATTGGGGTTGATAATCA+TGG | + | chr5_4:16326241-16326260 | Msa0840550:CDS | 40.0% |
| TGATCCGTAAGGATTGTTTG+TGG | - | chr5_4:16326468-16326487 | None:intergenic | 40.0% | |
| ACTTACAGAAGCCATTGCAA+AGG | + | chr5_4:16326497-16326516 | Msa0840550:CDS | 40.0% | |
| GTCCTTGCTTAGACCAAATT+GGG | - | chr5_4:16326694-16326713 | None:intergenic | 40.0% | |
| TTTGCAGCATGTTCCTCAAT+AGG | - | chr5_4:16327057-16327076 | None:intergenic | 40.0% | |
| CGACATCATACCAAAGTTGA+TGG | + | chr5_4:16327171-16327190 | Msa0840550:intron | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr5_4:16327174-16327193 | Msa0840550:intron | 40.0% |
| CTTTCTCTTCTCCATCGAAA+AGG | - | chr5_4:16327339-16327358 | None:intergenic | 40.0% | |
| CCCGATGTTCCAAATAATGA+TGG | + | chr5_4:16327567-16327586 | Msa0840550:CDS | 40.0% | |
| GTTCTTGGATAGGATCACAA+AGG | + | chr5_4:16327836-16327855 | Msa0840550:intron | 40.0% | |
| ACAGTACTAGTTCCAAGCTG+AGG | - | chr5_4:16325458-16325477 | None:intergenic | 45.0% | |
| !! | AGGCTTTGAAGGAAAATGGG+TGG | + | chr5_4:16325760-16325779 | Msa0840550:CDS | 45.0% |
| ! | ATGCCACTTGGAATGTGGAT+TGG | + | chr5_4:16326226-16326245 | Msa0840550:CDS | 45.0% |
| ! | TGCCACTTGGAATGTGGATT+GGG | + | chr5_4:16326227-16326246 | Msa0840550:CDS | 45.0% |
| GTGCAAGATCTTGATCCGTA+AGG | - | chr5_4:16326479-16326498 | None:intergenic | 45.0% | |
| TGGTACACCCTATGAAACTC+CGG | - | chr5_4:16326624-16326643 | None:intergenic | 45.0% | |
| TGCCCAATTTGGTCTAAGCA+AGG | + | chr5_4:16326689-16326708 | Msa0840550:CDS | 45.0% | |
| CGTCCTTGCTTAGACCAAAT+TGG | - | chr5_4:16326695-16326714 | None:intergenic | 45.0% | |
| TTGGGGCCTAGCTTATTTGA+AGG | + | chr5_4:16326749-16326768 | Msa0840550:CDS | 45.0% | |
| TAGACATCAAGCAGGAGAAG+AGG | + | chr5_4:16326984-16327003 | Msa0840550:CDS | 45.0% | |
| TAGACGACCACCATCAACTT+TGG | - | chr5_4:16327184-16327203 | None:intergenic | 45.0% | |
| ! | CAGGCATGCCTTTTATCTGT+CGG | - | chr5_4:16327509-16327528 | None:intergenic | 45.0% |
| ! | TTTGGAACATCGGGTGCATT+GGG | - | chr5_4:16327561-16327580 | None:intergenic | 45.0% |
| ! | ATTTGGAACATCGGGTGCAT+TGG | - | chr5_4:16327562-16327581 | None:intergenic | 45.0% |
| AAATCCAAAGGTCGGCCAAA+AGG | + | chr5_4:16327618-16327637 | Msa0840550:CDS | 45.0% | |
| !!! | CCTTTTGGCCTTGAACCTTT+TGG | - | chr5_4:16327636-16327655 | None:intergenic | 45.0% |
| CCAAAAGGTTCAAGGCCAAA+AGG | + | chr5_4:16327633-16327652 | Msa0840550:CDS | 45.0% | |
| AAAGGTTCAAGGCCAAAAGG+TGG | + | chr5_4:16327636-16327655 | Msa0840550:CDS | 45.0% | |
| CGTTGTCACGTTCCAAATTG+CGG | + | chr5_4:16327684-16327703 | Msa0840550:CDS | 45.0% | |
| ACAATTCCGCGAGTCATGAT+TGG | - | chr5_4:16327715-16327734 | None:intergenic | 45.0% | |
| TGGATAGGATCACAAAGGGT+TGG | + | chr5_4:16327841-16327860 | Msa0840550:intron | 45.0% | |
| TCTTCAAATGTGCAGTGAGC+TGG | + | chr5_4:16327873-16327892 | Msa0840550:CDS | 45.0% | |
| CCAAGCTGAGGTTCTTGATG+TGG | - | chr5_4:16325446-16325465 | None:intergenic | 50.0% | |
| CCACATCAAGAACCTCAGCT+TGG | + | chr5_4:16325443-16325462 | Msa0840550:CDS | 50.0% | |
| ! | GCCACTTGGAATGTGGATTG+GGG | + | chr5_4:16326228-16326247 | Msa0840550:CDS | 50.0% |
| ACCCCAATCCACATTCCAAG+TGG | - | chr5_4:16326232-16326251 | None:intergenic | 50.0% | |
| TTTGCTGGGATGACGACAAC+TGG | + | chr5_4:16326780-16326799 | Msa0840550:CDS | 50.0% | |
| ! | GCATGCCTTTTATCTGTCGG+AGG | - | chr5_4:16327506-16327525 | None:intergenic | 50.0% |
| ! | TGAACCTTTTGGCCGACCTT+TGG | - | chr5_4:16327625-16327644 | None:intergenic | 50.0% |
| AAGGTCGGCCAAAAGGTTCA+AGG | + | chr5_4:16327625-16327644 | Msa0840550:CDS | 50.0% | |
| ! | GCAGCTTCAACTCCACCTTT+TGG | - | chr5_4:16327651-16327670 | None:intergenic | 50.0% |
| GTGACAACGTCGAAGCTTCT+TGG | - | chr5_4:16327673-16327692 | None:intergenic | 50.0% | |
| TGTCACGTTCCAAATTGCGG+CGG | + | chr5_4:16327687-16327706 | Msa0840550:CDS | 50.0% | |
| ! | TGATTGGTTCCGCCGCAATT+TGG | - | chr5_4:16327699-16327718 | None:intergenic | 50.0% |
| GCGGAACCAATCATGACTCG+CGG | + | chr5_4:16327706-16327725 | Msa0840550:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 16325332 | 16327925 | 16325332 | ID=Msa0840550;Name=Msa0840550 |
| chr5_4 | mRNA | 16325332 | 16327925 | 16325332 | ID=Msa0840550-mRNA-1;Parent=Msa0840550;Name=Msa0840550-mRNA-1;_AED=0.29;_eAED=0.30;_QI=0|0|0|0.4|1|1|5|0|675 |
| chr5_4 | exon | 16325332 | 16326333 | 16325332 | ID=Msa0840550-mRNA-1:exon:7022;Parent=Msa0840550-mRNA-1 |
| chr5_4 | exon | 16326435 | 16326878 | 16326435 | ID=Msa0840550-mRNA-1:exon:7023;Parent=Msa0840550-mRNA-1 |
| chr5_4 | exon | 16326964 | 16327153 | 16326964 | ID=Msa0840550-mRNA-1:exon:7024;Parent=Msa0840550-mRNA-1 |
| chr5_4 | exon | 16327445 | 16327758 | 16327445 | ID=Msa0840550-mRNA-1:exon:7025;Parent=Msa0840550-mRNA-1 |
| chr5_4 | exon | 16327848 | 16327925 | 16327848 | ID=Msa0840550-mRNA-1:exon:7026;Parent=Msa0840550-mRNA-1 |
| chr5_4 | CDS | 16325332 | 16326333 | 16325332 | ID=Msa0840550-mRNA-1:cds;Parent=Msa0840550-mRNA-1 |
| chr5_4 | CDS | 16326435 | 16326878 | 16326435 | ID=Msa0840550-mRNA-1:cds;Parent=Msa0840550-mRNA-1 |
| chr5_4 | CDS | 16326964 | 16327153 | 16326964 | ID=Msa0840550-mRNA-1:cds;Parent=Msa0840550-mRNA-1 |
| chr5_4 | CDS | 16327445 | 16327758 | 16327445 | ID=Msa0840550-mRNA-1:cds;Parent=Msa0840550-mRNA-1 |
| chr5_4 | CDS | 16327848 | 16327925 | 16327848 | ID=Msa0840550-mRNA-1:cds;Parent=Msa0840550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
