Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840580 | XP_003612622.1 | 92.470 | 332 | 17 | 1 | 47 | 378 | 1 | 324 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840580 | sp|Q6AWY4|GRF5_ORYSJ | 36.061 | 330 | 156 | 9 | 63 | 364 | 25 | 327 | 9.26e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840580 | G7K6W0 | 92.470 | 332 | 17 | 1 | 47 | 378 | 1 | 324 | 0.0 | 585 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0840580 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840580 | MtrunA17_Chr5g0409471 | 92.470 | 332 | 17 | 1 | 47 | 378 | 1 | 324 | 0.0 | 585 |
| Msa0840580 | MtrunA17_Chr4g0021261 | 47.418 | 213 | 77 | 9 | 62 | 261 | 25 | 215 | 5.83e-49 | 168 |
| Msa0840580 | MtrunA17_Chr4g0070591 | 34.058 | 276 | 146 | 7 | 62 | 306 | 9 | 279 | 5.24e-42 | 150 |
| Msa0840580 | MtrunA17_Chr2g0300511 | 60.177 | 113 | 29 | 2 | 62 | 158 | 7 | 119 | 6.43e-40 | 145 |
| Msa0840580 | MtrunA17_Chr8g0343881 | 58.333 | 108 | 33 | 2 | 63 | 158 | 12 | 119 | 1.60e-38 | 141 |
| Msa0840580 | MtrunA17_Chr1g0152191 | 56.897 | 116 | 34 | 2 | 62 | 161 | 144 | 259 | 2.63e-36 | 139 |
| Msa0840580 | MtrunA17_Chr7g0265931 | 62.037 | 108 | 29 | 4 | 63 | 158 | 79 | 186 | 1.98e-35 | 133 |
| Msa0840580 | MtrunA17_Chr3g0127641 | 53.000 | 100 | 39 | 2 | 60 | 158 | 110 | 202 | 9.66e-27 | 111 |
| Msa0840580 | MtrunA17_Chr8g0351521 | 47.619 | 105 | 43 | 2 | 61 | 160 | 53 | 150 | 9.82e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840580 | AT3G13960.1 | 57.273 | 110 | 35 | 2 | 61 | 158 | 15 | 124 | 5.35e-38 | 141 |
| Msa0840580 | AT4G37740.1 | 48.649 | 148 | 62 | 3 | 62 | 199 | 164 | 307 | 3.32e-37 | 141 |
| Msa0840580 | AT3G52910.1 | 56.250 | 112 | 33 | 3 | 63 | 158 | 83 | 194 | 4.30e-33 | 127 |
| Msa0840580 | AT2G36400.1 | 56.250 | 112 | 34 | 3 | 63 | 159 | 77 | 188 | 6.22e-33 | 127 |
| Msa0840580 | AT2G22840.1 | 57.944 | 107 | 35 | 2 | 62 | 158 | 133 | 239 | 2.23e-30 | 122 |
| Msa0840580 | AT2G06200.2 | 50.400 | 125 | 39 | 3 | 55 | 156 | 38 | 162 | 4.11e-30 | 117 |
| Msa0840580 | AT2G06200.1 | 52.066 | 121 | 35 | 3 | 59 | 156 | 3 | 123 | 7.30e-30 | 115 |
| Msa0840580 | AT4G24150.3 | 46.610 | 118 | 47 | 2 | 63 | 164 | 112 | 229 | 2.34e-23 | 101 |
| Msa0840580 | AT4G24150.2 | 46.610 | 118 | 47 | 2 | 63 | 164 | 150 | 267 | 4.97e-23 | 100 |
| Msa0840580 | AT5G53660.1 | 49.485 | 97 | 44 | 1 | 62 | 158 | 59 | 150 | 3.12e-22 | 97.1 |
| Msa0840580 | AT4G24150.1 | 37.762 | 143 | 48 | 1 | 63 | 164 | 150 | 292 | 1.08e-20 | 94.0 |
| Msa0840580 | AT2G45480.2 | 39.815 | 108 | 51 | 2 | 61 | 155 | 23 | 129 | 6.04e-17 | 81.3 |
| Msa0840580 | AT2G06200.3 | 72.917 | 48 | 11 | 1 | 111 | 156 | 4 | 51 | 8.52e-17 | 77.8 |
| Msa0840580 | AT2G45480.1 | 39.815 | 108 | 51 | 2 | 61 | 155 | 21 | 127 | 2.30e-16 | 80.5 |
| Msa0840580 | AT2G45480.1 | 36.458 | 96 | 48 | 3 | 67 | 162 | 269 | 351 | 1.17e-12 | 69.3 |
| Msa0840580 | AT2G45480.3 | 39.815 | 108 | 51 | 2 | 61 | 155 | 23 | 129 | 2.32e-16 | 80.5 |
| Msa0840580 | AT2G45480.3 | 36.458 | 96 | 48 | 3 | 67 | 162 | 271 | 353 | 1.17e-12 | 69.3 |
Find 98 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATGCTTCTTCCTCTTC+AGG | 0.174652 | 5_4:-16409038 | Msa0840580:CDS |
| CTTCTACACCTACCTGGTTC+TGG | 0.179105 | 5_4:+16409388 | None:intergenic |
| GGCTCAACTGGTTTCCTCTA+AGG | 0.291080 | 5_4:-16409876 | Msa0840580:CDS |
| AATGCAACAAATCAAGAAAA+AGG | 0.318694 | 5_4:+16406691 | None:intergenic |
| TTTGTTTCAGTGGGTTATTA+TGG | 0.331715 | 5_4:-16409424 | Msa0840580:intron |
| TTCTACACCTACCTGGTTCT+GGG | 0.343240 | 5_4:+16409389 | None:intergenic |
| GGTGAGGGAGGAGGAAAGGG+TGG | 0.357595 | 5_4:+16409845 | None:intergenic |
| GGGTGGGGAGCTTACCTTAG+AGG | 0.358982 | 5_4:+16409862 | None:intergenic |
| TTCCTAGATCCTTCTGTAAG+AGG | 0.359958 | 5_4:+16407224 | None:intergenic |
| GAAGGTTTAAGTTTCAATCT+TGG | 0.362165 | 5_4:-16409082 | Msa0840580:CDS |
| CCTATGCTTCTTCCTCTTCA+GGG | 0.369011 | 5_4:-16409037 | Msa0840580:CDS |
| AAGGTTTAAGTTTCAATCTT+GGG | 0.373864 | 5_4:-16409081 | Msa0840580:CDS |
| GGTTGTGGTGGTGGTGAGGG+AGG | 0.375922 | 5_4:+16409833 | None:intergenic |
| GATGTTCTAGCTCTTGCCAT+TGG | 0.387285 | 5_4:+16409625 | None:intergenic |
| TCCAAGGAAATTGTCTTTAA+CGG | 0.387679 | 5_4:-16407025 | Msa0840580:CDS |
| TTTACCAATGATGGCTCAAC+TGG | 0.388761 | 5_4:-16409888 | None:intergenic |
| GAGAGAAGAGACGGTGGTTG+TGG | 0.392939 | 5_4:+16409818 | None:intergenic |
| TTTCAATCAACATTGACATC+TGG | 0.399287 | 5_4:+16406878 | None:intergenic |
| TGAGGGAGGAGGAAAGGGTG+GGG | 0.407542 | 5_4:+16409847 | None:intergenic |
| CCTCCTCTGCAATGGAGTAT+AGG | 0.408064 | 5_4:-16406925 | Msa0840580:CDS |
| GGTGGTGAGGGAGGAGGAAA+GGG | 0.410748 | 5_4:+16409842 | None:intergenic |
| ATGTTCTAGCTCTTGCCATT+GGG | 0.417081 | 5_4:+16409626 | None:intergenic |
| GCCGTTAAAGACAATTTCCT+TGG | 0.422082 | 5_4:+16407024 | None:intergenic |
| CTCTCTTCAGTGACTGGCAG+TGG | 0.424103 | 5_4:-16406961 | Msa0840580:CDS |
| GGTGGTTGTGGTGGTGGTGA+GGG | 0.429607 | 5_4:+16409830 | None:intergenic |
| GTTCTCTTGTTGTTCGCTGT+TGG | 0.429758 | 5_4:+16407077 | None:intergenic |
| CGGTGGTTGTGGTGGTGGTG+AGG | 0.431472 | 5_4:+16409829 | None:intergenic |
| AGGGTTCTAAGAAACCTTAT+AGG | 0.432493 | 5_4:-16409018 | Msa0840580:intron |
| CTCAGTCTCTCTTCAGTGAC+TGG | 0.441726 | 5_4:-16406967 | Msa0840580:CDS |
| CCAGCTAGGTAGTTTGAAAC+AGG | 0.443147 | 5_4:-16407002 | Msa0840580:CDS |
| ACACTTCCTTTGCACACAAA+TGG | 0.450249 | 5_4:-16409112 | Msa0840580:CDS |
| CTTGGTGCTGGTGGTTCTAG+TGG | 0.451681 | 5_4:-16409184 | Msa0840580:CDS |
| GTGAGGGAGGAGGAAAGGGT+GGG | 0.452048 | 5_4:+16409846 | None:intergenic |
| CGGTCACAGTACTTAGAATC+AGG | 0.455848 | 5_4:+16409325 | None:intergenic |
| TGGTGGTGAGGGAGGAGGAA+AGG | 0.456820 | 5_4:+16409841 | None:intergenic |
| TGTGGTGGTGGTGAGGGAGG+AGG | 0.467729 | 5_4:+16409836 | None:intergenic |
| AGAGACGGTGGTTGTGGTGG+TGG | 0.472006 | 5_4:+16409824 | None:intergenic |
| TGATGTTGAAAAGACTTCAT+AGG | 0.476193 | 5_4:+16406816 | None:intergenic |
| ATCTTCAAGTATCTCAAAGC+TGG | 0.478992 | 5_4:-16409594 | Msa0840580:CDS |
| GGTTATGACTTCACTTCAGA+TGG | 0.481110 | 5_4:-16407187 | Msa0840580:CDS |
| CGAATAGGTAAAAGGAGGTC+AGG | 0.485852 | 5_4:+16409558 | None:intergenic |
| TTGGTGTTAAAATCCTTGCT+TGG | 0.489894 | 5_4:+16406902 | None:intergenic |
| ATCAAGGAATTGTTCTTCCA+TGG | 0.491166 | 5_4:-16407116 | Msa0840580:CDS |
| ATCAACATTGACATCTGGAT+TGG | 0.498766 | 5_4:+16406883 | None:intergenic |
| AACCTCTTACAGAAGGATCT+AGG | 0.500686 | 5_4:-16407226 | Msa0840580:CDS |
| CAAACACTATTTCAGAATCA+AGG | 0.501303 | 5_4:-16407132 | Msa0840580:CDS |
| GCGTCGAGGTTAAGCAGCTC+AGG | 0.512667 | 5_4:+16407055 | None:intergenic |
| CTAGGAACTGTGAAGTATCA+AGG | 0.513671 | 5_4:-16407208 | Msa0840580:CDS |
| ATTCCACAGGCTTTCTTGAA+CGG | 0.519412 | 5_4:+16409281 | None:intergenic |
| CCCTGAAGAGGAAGAAGCAT+AGG | 0.524973 | 5_4:+16409037 | None:intergenic |
| CCTGTTTCAAACTACCTAGC+TGG | 0.525039 | 5_4:+16407002 | None:intergenic |
| ATTGTCTTTAACGGCCAGCT+AGG | 0.529877 | 5_4:-16407016 | Msa0840580:CDS |
| ACTTCACAGCAACTTGGTGC+TGG | 0.533655 | 5_4:-16409196 | Msa0840580:CDS |
| CACACAAATGGTACTCGTGA+AGG | 0.536853 | 5_4:-16409100 | Msa0840580:CDS |
| TCTGTTCTTCTACACCTACC+TGG | 0.541473 | 5_4:+16409382 | None:intergenic |
| TCACAGCAACTTGGTGCTGG+TGG | 0.545124 | 5_4:-16409193 | Msa0840580:CDS |
| CGAGTACCATTTGTGTGCAA+AGG | 0.548009 | 5_4:+16409106 | None:intergenic |
| TAATAGGTTTGGACTGAACT+CGG | 0.548879 | 5_4:-16407263 | Msa0840580:intron |
| CCTATACTCCATTGCAGAGG+AGG | 0.551750 | 5_4:+16406925 | None:intergenic |
| TGGGAACACCATGCCCCACA+TGG | 0.552810 | 5_4:-16409062 | Msa0840580:CDS |
| ACAGTAGGAAAATTGAAGCT+TGG | 0.552947 | 5_4:+16406782 | None:intergenic |
| AGTACTACTTCACAGCAACT+TGG | 0.553505 | 5_4:-16409202 | Msa0840580:CDS |
| CATAGGGTCCATGTGGGGCA+TGG | 0.558053 | 5_4:+16409054 | None:intergenic |
| AGATTTAGCCTCCTCTGCAA+TGG | 0.559132 | 5_4:-16406933 | Msa0840580:CDS |
| TTCAACAACCGCCGTTGATG+TGG | 0.565403 | 5_4:-16409677 | Msa0840580:CDS |
| AGAAGAGACGGTGGTTGTGG+TGG | 0.566603 | 5_4:+16409821 | None:intergenic |
| TGCCATTGGGAGACTGTGAA+CGG | 0.571539 | 5_4:+16409639 | None:intergenic |
| ACTTCACTTCAGATGGGATG+TGG | 0.577262 | 5_4:-16407180 | Msa0840580:CDS |
| CCTCGACGCTGCAAGATCCA+AGG | 0.587152 | 5_4:-16407041 | Msa0840580:CDS |
| TCCTACTGTTCACTTGAAGG+AGG | 0.592033 | 5_4:-16406768 | Msa0840580:three_prime_UTR |
| GAAGAAGAAGAAGATTCCAC+AGG | 0.592735 | 5_4:+16409268 | None:intergenic |
| CCTTGGATCTTGCAGCGTCG+AGG | 0.593781 | 5_4:+16407041 | None:intergenic |
| GAAGATGATGATGATGAAGA+AGG | 0.601811 | 5_4:+16409744 | None:intergenic |
| TGGACTGAACTCGGAAGCAG+AGG | 0.606816 | 5_4:-16407254 | Msa0840580:CDS |
| TCCTCCTTCAAGTGAACAGT+AGG | 0.608836 | 5_4:+16406767 | None:intergenic |
| GTTATGACTTCACTTCAGAT+GGG | 0.610905 | 5_4:-16407186 | Msa0840580:CDS |
| CACCGTTCACAGTCTCCCAA+TGG | 0.611493 | 5_4:-16409641 | Msa0840580:CDS |
| GGAGAACAACCTCTTACAGA+AGG | 0.617644 | 5_4:-16407233 | Msa0840580:CDS |
| ACTGTGAACGGTGGATGAGT+TGG | 0.621139 | 5_4:+16409651 | None:intergenic |
| GGTAGGTGTAGAAGAACAGA+TGG | 0.627953 | 5_4:-16409379 | Msa0840580:CDS |
| GGTTTCTTAGAACCCTGAAG+AGG | 0.629209 | 5_4:+16409025 | None:intergenic |
| CCTGAAGAGGAAGAAGCATA+GGG | 0.630158 | 5_4:+16409038 | None:intergenic |
| GTCACTGAAGAGAGACTGAG+AGG | 0.630803 | 5_4:+16406970 | None:intergenic |
| AAGAAGCATAGGGTCCATGT+GGG | 0.631241 | 5_4:+16409048 | None:intergenic |
| GAAGAAGCATAGGGTCCATG+TGG | 0.633928 | 5_4:+16409047 | None:intergenic |
| TGAGTTGGTGACCACATCAA+CGG | 0.634344 | 5_4:+16409666 | None:intergenic |
| TCTTATGATTGTTAGACACA+TGG | 0.646895 | 5_4:-16406634 | Msa0840580:three_prime_UTR |
| GAAGTTGTAGTTGTCAACCA+TGG | 0.647831 | 5_4:+16407099 | None:intergenic |
| TTACCGTTCAAGAAAGCCTG+TGG | 0.651222 | 5_4:-16409284 | Msa0840580:CDS |
| AATGGAGTATAGGCCAAGCA+AGG | 0.658290 | 5_4:-16406915 | Msa0840580:CDS |
| AAATTGACCCAGAACCAGGT+AGG | 0.671324 | 5_4:-16409396 | Msa0840580:CDS |
| TGGCCTATACTCCATTGCAG+AGG | 0.676725 | 5_4:+16406922 | None:intergenic |
| TAGACACATGGTGTGATGTG+TGG | 0.686427 | 5_4:-16406622 | Msa0840580:three_prime_UTR |
| ATAGGTAAAAGGAGGTCAGG+AGG | 0.695933 | 5_4:+16409561 | None:intergenic |
| AACGACGTCGAATCATATGA+CGG | 0.698475 | 5_4:+16409305 | None:intergenic |
| AGAAGCATAGGGTCCATGTG+GGG | 0.720767 | 5_4:+16409049 | None:intergenic |
| CATTGGGAGACTGTGAACGG+TGG | 0.744499 | 5_4:+16409642 | None:intergenic |
| GTTGGTGACCACATCAACGG+CGG | 0.749963 | 5_4:+16409669 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATTTTACTTTTTATA+AGG | - | chr5_4:16408894-16408913 | Msa0840580:intron | 10.0% |
| !!! | TTTTATATCTTTATGTTAGA+TGG | - | chr5_4:16407752-16407771 | Msa0840580:intron | 15.0% |
| !!! | ATACTTTATTTTATTCAACT+TGG | - | chr5_4:16407923-16407942 | Msa0840580:intron | 15.0% |
| !! | CAAATAGATATAAAATGAAA+TGG | + | chr5_4:16408496-16408515 | None:intergenic | 15.0% |
| !!! | CATTTCATTTTATATCTATT+TGG | - | chr5_4:16408494-16408513 | Msa0840580:intron | 15.0% |
| !!! | TGATATGATTTTTTAATTCT+AGG | - | chr5_4:16408517-16408536 | Msa0840580:intron | 15.0% |
| !!! | GTTTATTCTTTACTTTTAAA+TGG | - | chr5_4:16408615-16408634 | Msa0840580:intron | 15.0% |
| !! | AAAAAAGAAAAAAAGAGAAA+TGG | - | chr5_4:16408829-16408848 | Msa0840580:intron | 15.0% |
| !!! | GGATATTAATATTTTTATGA+AGG | - | chr5_4:16408943-16408962 | Msa0840580:intron | 15.0% |
| !!! | TATTAATATTTTTATGAAGG+TGG | - | chr5_4:16408946-16408965 | Msa0840580:intron | 15.0% |
| !! | ATCAAAATAGAGACAAAATA+AGG | + | chr5_4:16406957-16406976 | None:intergenic | 20.0% |
| !! | AAAAAAGAAACATACCTATA+AGG | + | chr5_4:16407431-16407450 | None:intergenic | 20.0% |
| !!! | TGTTTCTTTTGTTTTCAATA+AGG | - | chr5_4:16407461-16407480 | Msa0840580:intron | 20.0% |
| !! | AATCAATTGTGTAAACAAAA+AGG | + | chr5_4:16407734-16407753 | None:intergenic | 20.0% |
| !! | TGCAGAAATAATTACTTAAT+CGG | - | chr5_4:16407966-16407985 | Msa0840580:intron | 20.0% |
| !! | ATCGAATAAATAATGTGAAA+AGG | + | chr5_4:16408100-16408119 | None:intergenic | 20.0% |
| !!! | ACTTTTTATAAGGAATTTGT+AGG | - | chr5_4:16408904-16408923 | Msa0840580:intron | 20.0% |
| !!! | TTAAGTATTTTAGAAGTTGT+TGG | - | chr5_4:16409081-16409100 | Msa0840580:CDS | 20.0% |
| !! | CAAGTAGTTAAAAAAAATGA+TGG | - | chr5_4:16409851-16409870 | Msa0840580:CDS | 20.0% |
| !!! | TTTTGTTTTTGGGGTTTTTA+AGG | + | chr5_4:16406726-16406745 | None:intergenic | 25.0% |
| !!! | ATGCTCATGTTTTTGTTTTT+GGG | + | chr5_4:16406736-16406755 | None:intergenic | 25.0% |
| !!! | AATGCTCATGTTTTTGTTTT+TGG | + | chr5_4:16406737-16406756 | None:intergenic | 25.0% |
| !!! | TTTTGTGATTTTTGTTTCAG+TGG | - | chr5_4:16406998-16407017 | Msa0840580:CDS | 25.0% |
| !!! | TTTGTGATTTTTGTTTCAGT+GGG | - | chr5_4:16406999-16407018 | Msa0840580:CDS | 25.0% |
| !! | AAGGTTTAAGTTTCAATCTT+GGG | - | chr5_4:16407351-16407370 | Msa0840580:intron | 25.0% |
| !! | ATGTTTGTGTATTTGTGTTT+TGG | - | chr5_4:16407634-16407653 | Msa0840580:intron | 25.0% |
| !! | TGTTTGTGTATTTGTGTTTT+GGG | - | chr5_4:16407635-16407654 | Msa0840580:intron | 25.0% |
| ! | TTTATGTTAGATGGAAAACA+TGG | - | chr5_4:16407761-16407780 | Msa0840580:intron | 25.0% |
| ! | GCAGAAATAATTACTTAATC+GGG | - | chr5_4:16407967-16407986 | Msa0840580:intron | 25.0% |
| ! | AATAATTACTTAATCGGGTT+TGG | - | chr5_4:16407972-16407991 | Msa0840580:intron | 25.0% |
| ! | ATTTCAAATGACCATCAAAA+AGG | + | chr5_4:16408028-16408047 | None:intergenic | 25.0% |
| ! | TTTGATAAGATTGGAAATCA+AGG | - | chr5_4:16408170-16408189 | Msa0840580:intron | 25.0% |
| ! | TTGATAAGATTGGAAATCAA+GGG | - | chr5_4:16408171-16408190 | Msa0840580:intron | 25.0% |
| ! | TGATAGAGTTAAAGCAATTA+AGG | - | chr5_4:16408249-16408268 | Msa0840580:intron | 25.0% |
| ! | TTAAGACTAAAGACAAATGT+CGG | + | chr5_4:16408302-16408321 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTTTTCCTTTTCC+TGG | - | chr5_4:16408717-16408736 | Msa0840580:intron | 25.0% |
| !!! | AATGGATTAAACATTATAGC+AGG | - | chr5_4:16408847-16408866 | Msa0840580:intron | 25.0% |
| !!! | TGAATTGAGTTGAATCATTA+AGG | + | chr5_4:16409000-16409019 | None:intergenic | 25.0% |
| ! | TAATGATTCAACTCAATTCA+TGG | - | chr5_4:16409000-16409019 | Msa0840580:intron | 25.0% |
| ! | AATGCAACAAATCAAGAAAA+AGG | + | chr5_4:16409744-16409763 | None:intergenic | 25.0% |
| !!! | TGCTCATGTTTTTGTTTTTG+GGG | + | chr5_4:16406735-16406754 | None:intergenic | 30.0% |
| ! | AATTGAAGACTTTTCCGAAT+AGG | + | chr5_4:16406892-16406911 | None:intergenic | 30.0% |
| TAAGGAAGATTAACGTTGTT+GGG | + | chr5_4:16406939-16406958 | None:intergenic | 30.0% | |
| ATAAGGAAGATTAACGTTGT+TGG | + | chr5_4:16406940-16406959 | None:intergenic | 30.0% | |
| !! | TTTGTTTCAGTGGGTTATTA+TGG | - | chr5_4:16407008-16407027 | Msa0840580:CDS | 30.0% |
| ! | GAAGGTTTAAGTTTCAATCT+TGG | - | chr5_4:16407350-16407369 | Msa0840580:intron | 30.0% |
| ! | TTTTGTATAACCCTCTTGTT+CGG | - | chr5_4:16407497-16407516 | Msa0840580:intron | 30.0% |
| ! | GTTTGTGTATTTGTGTTTTG+GGG | - | chr5_4:16407636-16407655 | Msa0840580:intron | 30.0% |
| TAACTCTTCACAAGAAATCA+TGG | + | chr5_4:16407696-16407715 | None:intergenic | 30.0% | |
| AAGTTACATAACATGTGATG+TGG | - | chr5_4:16407797-16407816 | Msa0840580:intron | 30.0% | |
| !! | AAATCATGACTTGGTATTCT+GGG | - | chr5_4:16408044-16408063 | Msa0840580:intron | 30.0% |
| TAGTTCACTCACATCTAAAA+AGG | + | chr5_4:16408139-16408158 | None:intergenic | 30.0% | |
| ATTGGAAATCAAGGGAATTA+TGG | - | chr5_4:16408179-16408198 | Msa0840580:intron | 30.0% | |
| ! | TACTTGATGATTATCCAGAA+AGG | - | chr5_4:16408410-16408429 | Msa0840580:intron | 30.0% |
| ! | ACTTGATGATTATCCAGAAA+GGG | - | chr5_4:16408411-16408430 | Msa0840580:intron | 30.0% |
| ATTATGGGATAACATGTTGA+AGG | - | chr5_4:16408456-16408475 | Msa0840580:intron | 30.0% | |
| GATAACATGTTGAAGGAATT+TGG | - | chr5_4:16408463-16408482 | Msa0840580:intron | 30.0% | |
| TGTCATTGATACTATGTAGA+TGG | - | chr5_4:16408755-16408774 | Msa0840580:intron | 30.0% | |
| AGTTGAATCATTAAGGCTTA+AGG | + | chr5_4:16408993-16409012 | None:intergenic | 30.0% | |
| AAATTGCAAAAGACTACATG+TGG | + | chr5_4:16409056-16409075 | None:intergenic | 30.0% | |
| AACTGAACACACTCAATAAT+AGG | - | chr5_4:16409153-16409172 | Msa0840580:CDS | 30.0% | |
| AACACACTCAATAATAGGTT+TGG | - | chr5_4:16409158-16409177 | Msa0840580:CDS | 30.0% | |
| CAAACACTATTTCAGAATCA+AGG | - | chr5_4:16409300-16409319 | Msa0840580:CDS | 30.0% | |
| TCCAAGGAAATTGTCTTTAA+CGG | - | chr5_4:16409407-16409426 | Msa0840580:CDS | 30.0% | |
| TTTCAATCAACATTGACATC+TGG | + | chr5_4:16409557-16409576 | None:intergenic | 30.0% | |
| TGATGTTGAAAAGACTTCAT+AGG | + | chr5_4:16409619-16409638 | None:intergenic | 30.0% | |
| ! | ATGAAGTCTTTTCAACATCA+TGG | - | chr5_4:16409619-16409638 | Msa0840580:CDS | 30.0% |
| TCTTATGATTGTTAGACACA+TGG | - | chr5_4:16409798-16409817 | Msa0840580:intron | 30.0% | |
| GATTATAGAGAGAGAAGAGA+CGG | + | chr5_4:16406626-16406645 | None:intergenic | 35.0% | |
| AGAAGGATTGAATCTAGAAG+AGG | + | chr5_4:16406674-16406693 | None:intergenic | 35.0% | |
| ! | GAAGATGATGATGATGAAGA+AGG | + | chr5_4:16406691-16406710 | None:intergenic | 35.0% |
| ATCTTCAAGTATCTCAAAGC+TGG | - | chr5_4:16406838-16406857 | Msa0840580:three_prime_UTR | 35.0% | |
| ! | TTTTCCGAATAGGTAAAAGG+AGG | + | chr5_4:16406882-16406901 | None:intergenic | 35.0% |
| ! | GACTTTTCCGAATAGGTAAA+AGG | + | chr5_4:16406885-16406904 | None:intergenic | 35.0% |
| AAAAAAATTGACCCAGAACC+AGG | - | chr5_4:16407032-16407051 | Msa0840580:CDS | 35.0% | |
| GAAGAACAGATGGCAAAAAA+TGG | - | chr5_4:16407063-16407082 | Msa0840580:CDS | 35.0% | |
| CAAAAAATGGAGATGTGCTA+GGG | - | chr5_4:16407076-16407095 | Msa0840580:CDS | 35.0% | |
| !! | AGGGTTCTAAGAAACCTTAT+AGG | - | chr5_4:16407414-16407433 | Msa0840580:intron | 35.0% |
| TTTGTATAACCCTCTTGTTC+GGG | - | chr5_4:16407498-16407517 | Msa0840580:intron | 35.0% | |
| !!! | GGCATTGGTAAAAGATTTTG+TGG | - | chr5_4:16407993-16408012 | Msa0840580:intron | 35.0% |
| ! | GGATTGAATTGCCTTTTTGA+TGG | - | chr5_4:16408014-16408033 | Msa0840580:intron | 35.0% |
| ! | GGTCATTTGAAATCATGACT+TGG | - | chr5_4:16408035-16408054 | Msa0840580:intron | 35.0% |
| !! | GAAATCATGACTTGGTATTC+TGG | - | chr5_4:16408043-16408062 | Msa0840580:intron | 35.0% |
| CACATTATTTATTCGATGCC+TGG | - | chr5_4:16408103-16408122 | Msa0840580:intron | 35.0% | |
| TTAGATGTGAGTGAACTAAG+AGG | - | chr5_4:16408141-16408160 | Msa0840580:intron | 35.0% | |
| TAGATGTGAGTGAACTAAGA+GGG | - | chr5_4:16408142-16408161 | Msa0840580:intron | 35.0% | |
| AGGGCATGATTTGATAAGAT+TGG | - | chr5_4:16408161-16408180 | Msa0840580:intron | 35.0% | |
| GAGTTAAAGCAATTAAGGAG+AGG | - | chr5_4:16408254-16408273 | Msa0840580:intron | 35.0% | |
| ! | TAAAGACAAATGTCGGTTAG+TGG | + | chr5_4:16408295-16408314 | None:intergenic | 35.0% |
| !! | ATAGCTTTGAGCTGGTATTA+TGG | - | chr5_4:16408440-16408459 | Msa0840580:intron | 35.0% |
| !! | TAGCTTTGAGCTGGTATTAT+GGG | - | chr5_4:16408441-16408460 | Msa0840580:intron | 35.0% |
| AGATGACGACATCTAATTGA+TGG | + | chr5_4:16408543-16408562 | None:intergenic | 35.0% | |
| AGTCAAACAAGAATGCAAGT+AGG | + | chr5_4:16408595-16408614 | None:intergenic | 35.0% | |
| TCAATGACAATGTCCATTGA+TGG | + | chr5_4:16408744-16408763 | None:intergenic | 35.0% | |
| ATGAAATGAACATGCTGTAG+TGG | - | chr5_4:16408780-16408799 | Msa0840580:intron | 35.0% | |
| TGAAATGAACATGCTGTAGT+GGG | - | chr5_4:16408781-16408800 | Msa0840580:intron | 35.0% | |
| ! | TTATAGCAGGAGTTGTGTTT+TGG | - | chr5_4:16408860-16408879 | Msa0840580:intron | 35.0% |
| TAAGGAATTTGTAGGATCTG+AGG | - | chr5_4:16408912-16408931 | Msa0840580:intron | 35.0% | |
| GTGTTCAGTTAACATCATGA+TGG | + | chr5_4:16409143-16409162 | None:intergenic | 35.0% | |
| TAATAGGTTTGGACTGAACT+CGG | - | chr5_4:16409169-16409188 | Msa0840580:CDS | 35.0% | |
| GTTATGACTTCACTTCAGAT+GGG | - | chr5_4:16409246-16409265 | Msa0840580:CDS | 35.0% | |
| ATCAAGGAATTGTTCTTCCA+TGG | - | chr5_4:16409316-16409335 | Msa0840580:CDS | 35.0% | |
| !! | TTGGTGTTAAAATCCTTGCT+TGG | + | chr5_4:16409533-16409552 | None:intergenic | 35.0% |
| ATCAACATTGACATCTGGAT+TGG | + | chr5_4:16409552-16409571 | None:intergenic | 35.0% | |
| ACAGTAGGAAAATTGAAGCT+TGG | + | chr5_4:16409653-16409672 | None:intergenic | 35.0% | |
| ! | TTTTCCTACTGTTCACTTGA+AGG | - | chr5_4:16409661-16409680 | Msa0840580:CDS | 35.0% |
| !! | ATGTTCTAGCTCTTGCCATT+GGG | + | chr5_4:16406809-16406828 | None:intergenic | 40.0% |
| ! | CTGACCTCCTTTTACCTATT+CGG | - | chr5_4:16406875-16406894 | Msa0840580:exon | 40.0% |
| GCAAAAAATGGAGATGTGCT+AGG | - | chr5_4:16407075-16407094 | Msa0840580:CDS | 40.0% | |
| AACGACGTCGAATCATATGA+CGG | + | chr5_4:16407130-16407149 | None:intergenic | 40.0% | |
| ATTCCACAGGCTTTCTTGAA+CGG | + | chr5_4:16407154-16407173 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGATTCCAC+AGG | + | chr5_4:16407167-16407186 | None:intergenic | 40.0% | |
| AGTACTACTTCACAGCAACT+TGG | - | chr5_4:16407230-16407249 | Msa0840580:CDS | 40.0% | |
| ACACTTCCTTTGCACACAAA+TGG | - | chr5_4:16407320-16407339 | Msa0840580:intron | 40.0% | |
| TTGTATAACCCTCTTGTTCG+GGG | - | chr5_4:16407499-16407518 | Msa0840580:intron | 40.0% | |
| GACCTTAGTAATCCAGAGTT+CGG | - | chr5_4:16407527-16407546 | Msa0840580:intron | 40.0% | |
| GATCCTTATCATGTGTGTGT+GGG | - | chr5_4:16407819-16407838 | Msa0840580:intron | 40.0% | |
| ATCCTTATCATGTGTGTGTG+GGG | - | chr5_4:16407820-16407839 | Msa0840580:intron | 40.0% | |
| ! | AAGTCATCTGGCCATAGTTT+TGG | - | chr5_4:16407864-16407883 | Msa0840580:intron | 40.0% |
| CAAGCCTAACTCCAAAACTA+TGG | + | chr5_4:16407878-16407897 | None:intergenic | 40.0% | |
| TACTTAATCGGGTTTGGCAT+TGG | - | chr5_4:16407978-16407997 | Msa0840580:intron | 40.0% | |
| TAAAAAGGCGAACAATGACC+AGG | + | chr5_4:16408124-16408143 | None:intergenic | 40.0% | |
| !! | TGTCTTTAGTCTTAACCCTC+CGG | - | chr5_4:16408307-16408326 | Msa0840580:intron | 40.0% |
| ! | GGTTAGTTATGACCAAACTC+CGG | + | chr5_4:16408359-16408378 | None:intergenic | 40.0% |
| GTTAGATGCTAGTTAGACGT+TGG | + | chr5_4:16408380-16408399 | None:intergenic | 40.0% | |
| CTGGATAATCATCAAGTAGC+AGG | + | chr5_4:16408408-16408427 | None:intergenic | 40.0% | |
| TGATGATTATCCAGAAAGGG+TGG | - | chr5_4:16408414-16408433 | Msa0840580:intron | 40.0% | |
| CAAACAAGAATGCAAGTAGG+AGG | + | chr5_4:16408592-16408611 | None:intergenic | 40.0% | |
| AATGGAACGCATTGTAGTCT+TGG | - | chr5_4:16408633-16408652 | Msa0840580:intron | 40.0% | |
| GTGTTCAATGCGATCTAACA+AGG | - | chr5_4:16408670-16408689 | Msa0840580:intron | 40.0% | |
| ! | GTAGGATCTGAGGTATGAAA+TGG | - | chr5_4:16408922-16408941 | Msa0840580:intron | 40.0% |
| CAACTCAATTCATGGCTACA+TGG | - | chr5_4:16409008-16409027 | Msa0840580:intron | 40.0% | |
| AACCTCTTACAGAAGGATCT+AGG | - | chr5_4:16409206-16409225 | Msa0840580:CDS | 40.0% | |
| TTCCTAGATCCTTCTGTAAG+AGG | + | chr5_4:16409211-16409230 | None:intergenic | 40.0% | |
| ! | CTAGGAACTGTGAAGTATCA+AGG | - | chr5_4:16409224-16409243 | Msa0840580:CDS | 40.0% |
| GGTTATGACTTCACTTCAGA+TGG | - | chr5_4:16409245-16409264 | Msa0840580:CDS | 40.0% | |
| GAAGTTGTAGTTGTCAACCA+TGG | + | chr5_4:16409336-16409355 | None:intergenic | 40.0% | |
| GCCGTTAAAGACAATTTCCT+TGG | + | chr5_4:16409411-16409430 | None:intergenic | 40.0% | |
| TATAGAGAGAGAAGAGACGG+TGG | + | chr5_4:16406623-16406642 | None:intergenic | 45.0% | |
| !! | TGAGTTGGTGACCACATCAA+CGG | + | chr5_4:16406769-16406788 | None:intergenic | 45.0% |
| !! | GATGTTCTAGCTCTTGCCAT+TGG | + | chr5_4:16406810-16406829 | None:intergenic | 45.0% |
| ATAGGTAAAAGGAGGTCAGG+AGG | + | chr5_4:16406874-16406893 | None:intergenic | 45.0% | |
| CGAATAGGTAAAAGGAGGTC+AGG | + | chr5_4:16406877-16406896 | None:intergenic | 45.0% | |
| GTTGTTGGGTACTTACGAGA+TGG | + | chr5_4:16406925-16406944 | None:intergenic | 45.0% | |
| AAATTGACCCAGAACCAGGT+AGG | - | chr5_4:16407036-16407055 | Msa0840580:CDS | 45.0% | |
| ! | TTCTACACCTACCTGGTTCT+GGG | + | chr5_4:16407046-16407065 | None:intergenic | 45.0% |
| TCTGTTCTTCTACACCTACC+TGG | + | chr5_4:16407053-16407072 | None:intergenic | 45.0% | |
| GGTAGGTGTAGAAGAACAGA+TGG | - | chr5_4:16407053-16407072 | Msa0840580:CDS | 45.0% | |
| CGGTCACAGTACTTAGAATC+AGG | + | chr5_4:16407110-16407129 | None:intergenic | 45.0% | |
| TTACCGTTCAAGAAAGCCTG+TGG | - | chr5_4:16407148-16407167 | Msa0840580:CDS | 45.0% | |
| CGAGTACCATTTGTGTGCAA+AGG | + | chr5_4:16407329-16407348 | None:intergenic | 45.0% | |
| CACACAAATGGTACTCGTGA+AGG | - | chr5_4:16407332-16407351 | Msa0840580:intron | 45.0% | |
| ! | AAGAAGCATAGGGTCCATGT+GGG | + | chr5_4:16407387-16407406 | None:intergenic | 45.0% |
| ! | CCTGAAGAGGAAGAAGCATA+GGG | + | chr5_4:16407397-16407416 | None:intergenic | 45.0% |
| CCTATGCTTCTTCCTCTTCA+GGG | - | chr5_4:16407395-16407414 | Msa0840580:intron | 45.0% | |
| GGTTTCTTAGAACCCTGAAG+AGG | + | chr5_4:16407410-16407429 | None:intergenic | 45.0% | |
| TGTATAACCCTCTTGTTCGG+GGG | - | chr5_4:16407500-16407519 | Msa0840580:intron | 45.0% | |
| TTAGTAATCCAGAGTTCGGC+CGG | - | chr5_4:16407531-16407550 | Msa0840580:intron | 45.0% | |
| !!! | TTTTGGGGTGTTTTGCCTTG+TGG | - | chr5_4:16407651-16407670 | Msa0840580:intron | 45.0% |
| !! | TTTGGGGTGTTTTGCCTTGT+GGG | - | chr5_4:16407652-16407671 | Msa0840580:intron | 45.0% |
| ! | TTTTGCCTTGTGGGGTTTTG+AGG | - | chr5_4:16407661-16407680 | Msa0840580:intron | 45.0% |
| CATTTCCTCAAAACCCCACA+AGG | + | chr5_4:16407669-16407688 | None:intergenic | 45.0% | |
| GGATCCTTATCATGTGTGTG+TGG | - | chr5_4:16407818-16407837 | Msa0840580:intron | 45.0% | |
| TGGGGTGAGATTTGAGAGTA+AGG | - | chr5_4:16407838-16407857 | Msa0840580:intron | 45.0% | |
| AGAGTAAGGTGCAAGTCATC+TGG | - | chr5_4:16407852-16407871 | Msa0840580:intron | 45.0% | |
| !!! | CTGGCCATAGTTTTGGAGTT+AGG | - | chr5_4:16407871-16407890 | Msa0840580:intron | 45.0% |
| AAGCTATGAACCACCCTTTC+TGG | + | chr5_4:16408427-16408446 | None:intergenic | 45.0% | |
| ! | TCCTTTTCCTGGTCCATCAA+TGG | - | chr5_4:16408728-16408747 | Msa0840580:intron | 45.0% |
| ! | TCCATTGATGGACCAGGAAA+AGG | + | chr5_4:16408732-16408751 | None:intergenic | 45.0% |
| ! | ACAATGTCCATTGATGGACC+AGG | + | chr5_4:16408738-16408757 | None:intergenic | 45.0% |
| AATTCATGGCTACATGGCCT+CGG | - | chr5_4:16409014-16409033 | Msa0840580:intron | 45.0% | |
| ! | GATCCTGATGTTTAAGACCG+AGG | + | chr5_4:16409034-16409053 | None:intergenic | 45.0% |
| GGAGAACAACCTCTTACAGA+AGG | - | chr5_4:16409199-16409218 | Msa0840580:CDS | 45.0% | |
| ACTTCACTTCAGATGGGATG+TGG | - | chr5_4:16409252-16409271 | Msa0840580:CDS | 45.0% | |
| !! | GTTCTCTTGTTGTTCGCTGT+TGG | + | chr5_4:16409358-16409377 | None:intergenic | 45.0% |
| ATTGTCTTTAACGGCCAGCT+AGG | - | chr5_4:16409416-16409435 | Msa0840580:CDS | 45.0% | |
| CCTGTTTCAAACTACCTAGC+TGG | + | chr5_4:16409433-16409452 | None:intergenic | 45.0% | |
| ! | CCAGCTAGGTAGTTTGAAAC+AGG | - | chr5_4:16409430-16409449 | Msa0840580:intron | 45.0% |
| AGATTTAGCCTCCTCTGCAA+TGG | - | chr5_4:16409499-16409518 | Msa0840580:intron | 45.0% | |
| AATGGAGTATAGGCCAAGCA+AGG | - | chr5_4:16409517-16409536 | Msa0840580:intron | 45.0% | |
| TCCTACTGTTCACTTGAAGG+AGG | - | chr5_4:16409664-16409683 | Msa0840580:CDS | 45.0% | |
| TCCTCCTTCAAGTGAACAGT+AGG | + | chr5_4:16409668-16409687 | None:intergenic | 45.0% | |
| TAGACACATGGTGTGATGTG+TGG | - | chr5_4:16409810-16409829 | Msa0840580:intron | 45.0% | |
| ! | GGCTCAACTGGTTTCCTCTA+AGG | - | chr5_4:16406556-16406575 | Msa0840580:three_prime_UTR | 50.0% |
| TTCAACAACCGCCGTTGATG+TGG | - | chr5_4:16406755-16406774 | Msa0840580:three_prime_UTR | 50.0% | |
| ACTGTGAACGGTGGATGAGT+TGG | + | chr5_4:16406784-16406803 | None:intergenic | 50.0% | |
| TGCCATTGGGAGACTGTGAA+CGG | + | chr5_4:16406796-16406815 | None:intergenic | 50.0% | |
| CTTCTACACCTACCTGGTTC+TGG | + | chr5_4:16407047-16407066 | None:intergenic | 50.0% | |
| !! | ACTTCACAGCAACTTGGTGC+TGG | - | chr5_4:16407236-16407255 | Msa0840580:CDS | 50.0% |
| ! | AGAAGCATAGGGTCCATGTG+GGG | + | chr5_4:16407386-16407405 | None:intergenic | 50.0% |
| ! | GAAGAAGCATAGGGTCCATG+TGG | + | chr5_4:16407388-16407407 | None:intergenic | 50.0% |
| CCCTATGCTTCTTCCTCTTC+AGG | - | chr5_4:16407394-16407413 | Msa0840580:intron | 50.0% | |
| ! | CCCTGAAGAGGAAGAAGCAT+AGG | + | chr5_4:16407398-16407417 | None:intergenic | 50.0% |
| GTATAACCCTCTTGTTCGGG+GGG | - | chr5_4:16407501-16407520 | Msa0840580:intron | 50.0% | |
| GGCCGAACTCTGGATTACTA+AGG | + | chr5_4:16407532-16407551 | None:intergenic | 50.0% | |
| TAGTAATCCAGAGTTCGGCC+GGG | - | chr5_4:16407532-16407551 | Msa0840580:intron | 50.0% | |
| GCCAGACTTTACTTACCTCC+CGG | + | chr5_4:16407553-16407572 | None:intergenic | 50.0% | |
| !! | TTGGGGTGTTTTGCCTTGTG+GGG | - | chr5_4:16407653-16407672 | Msa0840580:intron | 50.0% |
| CACCCCACACACACATGATA+AGG | + | chr5_4:16407825-16407844 | None:intergenic | 50.0% | |
| CTACCAGAGCCTCTTCTCTT+GGG | + | chr5_4:16408335-16408354 | None:intergenic | 50.0% | |
| ACTACCAGAGCCTCTTCTCT+TGG | + | chr5_4:16408336-16408355 | None:intergenic | 50.0% | |
| !! | GGTGGTTCATAGCTTTGAGC+TGG | - | chr5_4:16408432-16408451 | Msa0840580:intron | 50.0% |
| TGGCCTCGGTCTTAAACATC+AGG | - | chr5_4:16409028-16409047 | Msa0840580:CDS | 50.0% | |
| GTCACTGAAGAGAGACTGAG+AGG | + | chr5_4:16409465-16409484 | None:intergenic | 50.0% | |
| CTCAGTCTCTCTTCAGTGAC+TGG | - | chr5_4:16409465-16409484 | Msa0840580:intron | 50.0% | |
| CCTATACTCCATTGCAGAGG+AGG | + | chr5_4:16409510-16409529 | None:intergenic | 50.0% | |
| CCTCCTCTGCAATGGAGTAT+AGG | - | chr5_4:16409507-16409526 | Msa0840580:intron | 50.0% | |
| TGGCCTATACTCCATTGCAG+AGG | + | chr5_4:16409513-16409532 | None:intergenic | 50.0% | |
| AGAAGAGACGGTGGTTGTGG+TGG | + | chr5_4:16406614-16406633 | None:intergenic | 55.0% | |
| GAGAGAAGAGACGGTGGTTG+TGG | + | chr5_4:16406617-16406636 | None:intergenic | 55.0% | |
| !! | GTTGGTGACCACATCAACGG+CGG | + | chr5_4:16406766-16406785 | None:intergenic | 55.0% |
| CATTGGGAGACTGTGAACGG+TGG | + | chr5_4:16406793-16406812 | None:intergenic | 55.0% | |
| CACCGTTCACAGTCTCCCAA+TGG | - | chr5_4:16406791-16406810 | Msa0840580:three_prime_UTR | 55.0% | |
| !! | TCACAGCAACTTGGTGCTGG+TGG | - | chr5_4:16407239-16407258 | Msa0840580:CDS | 55.0% |
| !! | CTTGGTGCTGGTGGTTCTAG+TGG | - | chr5_4:16407248-16407267 | Msa0840580:CDS | 55.0% |
| GCCGGGAGGTAAGTAAAGTC+TGG | - | chr5_4:16407549-16407568 | Msa0840580:intron | 55.0% | |
| CTCTTCTCTTGGGAACCGGA+GGG | + | chr5_4:16408325-16408344 | None:intergenic | 55.0% | |
| GAGCCTCTTCTCTTGGGAAC+CGG | + | chr5_4:16408329-16408348 | None:intergenic | 55.0% | |
| GTTCCCAAGAGAAGAGGCTC+TGG | - | chr5_4:16408329-16408348 | Msa0840580:intron | 55.0% | |
| ! | GAGAAGAGGCTCTGGTAGTC+CGG | - | chr5_4:16408337-16408356 | Msa0840580:intron | 55.0% |
| TGGACTGAACTCGGAAGCAG+AGG | - | chr5_4:16409178-16409197 | Msa0840580:CDS | 55.0% | |
| CTCTCTTCAGTGACTGGCAG+TGG | - | chr5_4:16409471-16409490 | Msa0840580:intron | 55.0% | |
| GGGTGGGGAGCTTACCTTAG+AGG | + | chr5_4:16406573-16406592 | None:intergenic | 60.0% | |
| TGAGGGAGGAGGAAAGGGTG+GGG | + | chr5_4:16406588-16406607 | None:intergenic | 60.0% | |
| GTGAGGGAGGAGGAAAGGGT+GGG | + | chr5_4:16406589-16406608 | None:intergenic | 60.0% | |
| GGTGGTGAGGGAGGAGGAAA+GGG | + | chr5_4:16406593-16406612 | None:intergenic | 60.0% | |
| ! | TGGTGGTGAGGGAGGAGGAA+AGG | + | chr5_4:16406594-16406613 | None:intergenic | 60.0% |
| !! | GGTGGTTGTGGTGGTGGTGA+GGG | + | chr5_4:16406605-16406624 | None:intergenic | 60.0% |
| AGAGACGGTGGTTGTGGTGG+TGG | + | chr5_4:16406611-16406630 | None:intergenic | 60.0% | |
| TGGGAACACCATGCCCCACA+TGG | - | chr5_4:16407370-16407389 | Msa0840580:intron | 60.0% | |
| CATAGGGTCCATGTGGGGCA+TGG | + | chr5_4:16407381-16407400 | None:intergenic | 60.0% | |
| TAACCCTCTTGTTCGGGGGG+AGG | - | chr5_4:16407504-16407523 | Msa0840580:intron | 60.0% | |
| AACCCTCTTGTTCGGGGGGA+GGG | - | chr5_4:16407505-16407524 | Msa0840580:intron | 60.0% | |
| TAATCCAGAGTTCGGCCGGG+AGG | - | chr5_4:16407535-16407554 | Msa0840580:intron | 60.0% | |
| CCTCTTCTCTTGGGAACCGG+AGG | + | chr5_4:16408326-16408345 | None:intergenic | 60.0% | |
| CCTCCGGTTCCCAAGAGAAG+AGG | - | chr5_4:16408323-16408342 | Msa0840580:intron | 60.0% | |
| ! | GGCTCTGGTAGTCCGGAGTT+TGG | - | chr5_4:16408344-16408363 | Msa0840580:intron | 60.0% |
| GCGTCGAGGTTAAGCAGCTC+AGG | + | chr5_4:16409380-16409399 | None:intergenic | 60.0% | |
| CCTTGGATCTTGCAGCGTCG+AGG | + | chr5_4:16409394-16409413 | None:intergenic | 60.0% | |
| CCTCGACGCTGCAAGATCCA+AGG | - | chr5_4:16409391-16409410 | Msa0840580:CDS | 60.0% | |
| GGTGAGGGAGGAGGAAAGGG+TGG | + | chr5_4:16406590-16406609 | None:intergenic | 65.0% | |
| !! | TGTGGTGGTGGTGAGGGAGG+AGG | + | chr5_4:16406599-16406618 | None:intergenic | 65.0% |
| !! | GGTTGTGGTGGTGGTGAGGG+AGG | + | chr5_4:16406602-16406621 | None:intergenic | 65.0% |
| !! | CGGTGGTTGTGGTGGTGGTG+AGG | + | chr5_4:16406606-16406625 | None:intergenic | 65.0% |
| GTCCCTCCCCCCGAACAAGA+GGG | + | chr5_4:16407510-16407529 | None:intergenic | 65.0% | |
| CTTACCTCCCGGCCGAACTC+TGG | + | chr5_4:16407542-16407561 | None:intergenic | 65.0% | |
| GGTCCCTCCCCCCGAACAAG+AGG | + | chr5_4:16407511-16407530 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 16406554 | 16409900 | 16406554 | ID=Msa0840580;Name=Msa0840580 |
| chr5_4 | mRNA | 16406554 | 16409900 | 16406554 | ID=Msa0840580-mRNA-1;Parent=Msa0840580;Name=Msa0840580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.66|0.5|1|1|1|4|326|378 |
| chr5_4 | exon | 16406554 | 16407279 | 16406554 | ID=Msa0840580-mRNA-1:exon:7065;Parent=Msa0840580-mRNA-1 |
| chr5_4 | exon | 16409019 | 16409436 | 16409019 | ID=Msa0840580-mRNA-1:exon:7064;Parent=Msa0840580-mRNA-1 |
| chr5_4 | exon | 16409526 | 16409773 | 16409526 | ID=Msa0840580-mRNA-1:exon:7063;Parent=Msa0840580-mRNA-1 |
| chr5_4 | exon | 16409830 | 16409900 | 16409830 | ID=Msa0840580-mRNA-1:exon:7062;Parent=Msa0840580-mRNA-1 |
| chr5_4 | CDS | 16409830 | 16409900 | 16409830 | ID=Msa0840580-mRNA-1:cds;Parent=Msa0840580-mRNA-1 |
| chr5_4 | CDS | 16409526 | 16409773 | 16409526 | ID=Msa0840580-mRNA-1:cds;Parent=Msa0840580-mRNA-1 |
| chr5_4 | CDS | 16409019 | 16409436 | 16409019 | ID=Msa0840580-mRNA-1:cds;Parent=Msa0840580-mRNA-1 |
| chr5_4 | CDS | 16406880 | 16407279 | 16406880 | ID=Msa0840580-mRNA-1:cds;Parent=Msa0840580-mRNA-1 |
| chr5_4 | three_prime_UTR | 16406554 | 16406879 | 16406554 | ID=Msa0840580-mRNA-1:three_prime_utr;Parent=Msa0840580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
