Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840660 | XP_003612667.1 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 1.70e-143 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840660 | sp|Q8S9H7|DIV_ANTMA | 39.227 | 181 | 91 | 5 | 30 | 204 | 65 | 232 | 2.00e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840660 | G7K885 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 8.10e-144 | 410 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0840660 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840660 | MtrunA17_Chr5g0409841 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 1.56e-147 | 410 |
| Msa0840660 | MtrunA17_Chr5g0440731 | 57.597 | 283 | 64 | 5 | 3 | 235 | 18 | 294 | 1.55e-92 | 273 |
| Msa0840660 | MtrunA17_Chr5g0440741 | 57.597 | 283 | 59 | 7 | 3 | 235 | 18 | 289 | 5.36e-90 | 267 |
| Msa0840660 | MtrunA17_Chr5g0409831 | 58.367 | 245 | 73 | 5 | 3 | 235 | 2 | 229 | 1.77e-83 | 248 |
| Msa0840660 | MtrunA17_Chr1g0210471 | 42.000 | 150 | 69 | 4 | 59 | 204 | 85 | 220 | 3.54e-26 | 102 |
| Msa0840660 | MtrunA17_Chr1g0162081 | 54.444 | 90 | 38 | 2 | 82 | 171 | 110 | 196 | 1.86e-25 | 101 |
| Msa0840660 | MtrunA17_Chr5g0436501 | 38.286 | 175 | 90 | 4 | 30 | 193 | 66 | 233 | 1.42e-24 | 98.2 |
| Msa0840660 | MtrunA17_Chr4g0062741 | 32.683 | 205 | 105 | 6 | 29 | 206 | 45 | 243 | 2.84e-24 | 98.2 |
| Msa0840660 | MtrunA17_Chr7g0241761 | 44.882 | 127 | 57 | 4 | 84 | 208 | 129 | 244 | 1.75e-23 | 96.3 |
| Msa0840660 | MtrunA17_Chr3g0104071 | 44.715 | 123 | 60 | 2 | 85 | 207 | 137 | 251 | 6.19e-23 | 94.7 |
| Msa0840660 | MtrunA17_Chr5g0429521 | 58.025 | 81 | 31 | 2 | 85 | 164 | 122 | 200 | 1.36e-22 | 93.6 |
| Msa0840660 | MtrunA17_Chr4g0055931 | 39.655 | 116 | 66 | 2 | 45 | 160 | 47 | 158 | 1.81e-22 | 93.6 |
| Msa0840660 | MtrunA17_Chr2g0331031 | 54.167 | 72 | 31 | 1 | 91 | 162 | 105 | 174 | 3.50e-21 | 90.5 |
| Msa0840660 | MtrunA17_Chr3g0135671 | 43.363 | 113 | 58 | 3 | 62 | 171 | 59 | 168 | 9.36e-21 | 87.4 |
| Msa0840660 | MtrunA17_Chr8g0365011 | 40.171 | 117 | 53 | 2 | 65 | 169 | 67 | 178 | 2.72e-19 | 84.3 |
| Msa0840660 | MtrunA17_Chr6g0488471 | 54.286 | 70 | 30 | 1 | 91 | 160 | 93 | 160 | 2.82e-19 | 84.3 |
| Msa0840660 | MtrunA17_Chr5g0415191 | 53.086 | 81 | 30 | 2 | 66 | 142 | 73 | 149 | 1.38e-18 | 82.8 |
| Msa0840660 | MtrunA17_Chr8g0389241 | 52.857 | 70 | 30 | 1 | 91 | 160 | 101 | 167 | 1.89e-18 | 82.0 |
| Msa0840660 | MtrunA17_Chr4g0059701 | 57.377 | 61 | 26 | 0 | 81 | 141 | 70 | 130 | 2.84e-18 | 81.6 |
| Msa0840660 | MtrunA17_Chr8g0364731 | 53.030 | 66 | 31 | 0 | 104 | 169 | 10 | 75 | 1.28e-17 | 77.8 |
| Msa0840660 | MtrunA17_Chr3g0092621 | 43.421 | 76 | 41 | 1 | 90 | 165 | 79 | 152 | 8.35e-17 | 75.5 |
| Msa0840660 | MtrunA17_Chr1g0192061 | 38.060 | 134 | 62 | 4 | 37 | 169 | 22 | 135 | 3.43e-16 | 73.9 |
| Msa0840660 | MtrunA17_Chr5g0432921 | 50.000 | 88 | 38 | 3 | 96 | 182 | 114 | 196 | 3.99e-16 | 74.7 |
| Msa0840660 | MtrunA17_Chr6g0452791 | 43.750 | 80 | 45 | 0 | 95 | 174 | 80 | 159 | 4.43e-15 | 70.9 |
| Msa0840660 | MtrunA17_Chr5g0432941 | 39.024 | 123 | 65 | 4 | 65 | 182 | 79 | 196 | 1.09e-14 | 70.9 |
| Msa0840660 | MtrunA17_Chr8g0370121 | 46.269 | 67 | 36 | 0 | 90 | 156 | 95 | 161 | 2.49e-14 | 70.1 |
| Msa0840660 | MtrunA17_Chr5g0409951 | 43.000 | 100 | 40 | 3 | 2 | 99 | 25 | 109 | 7.59e-14 | 68.9 |
| Msa0840660 | MtrunA17_Chr3g0113121 | 44.444 | 99 | 45 | 4 | 96 | 187 | 96 | 191 | 2.32e-13 | 67.0 |
| Msa0840660 | MtrunA17_Chr8g0370131 | 39.726 | 73 | 44 | 0 | 90 | 162 | 98 | 170 | 1.03e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840660 | AT5G08520.1 | 45.161 | 124 | 54 | 2 | 60 | 171 | 71 | 192 | 2.31e-26 | 103 |
| Msa0840660 | AT3G10580.2 | 33.690 | 187 | 99 | 6 | 22 | 206 | 39 | 202 | 3.06e-24 | 97.4 |
| Msa0840660 | AT5G23650.1 | 39.264 | 163 | 86 | 4 | 55 | 217 | 83 | 232 | 7.01e-24 | 98.2 |
| Msa0840660 | AT5G04760.1 | 54.217 | 83 | 36 | 1 | 80 | 162 | 84 | 164 | 7.07e-24 | 95.5 |
| Msa0840660 | AT3G10580.1 | 33.690 | 187 | 99 | 6 | 22 | 206 | 39 | 202 | 9.01e-24 | 97.1 |
| Msa0840660 | AT5G58900.1 | 61.333 | 75 | 26 | 2 | 91 | 164 | 137 | 209 | 3.33e-23 | 95.5 |
| Msa0840660 | AT1G49010.1 | 51.163 | 86 | 39 | 2 | 87 | 171 | 126 | 209 | 4.35e-23 | 95.5 |
| Msa0840660 | AT2G38090.1 | 54.878 | 82 | 34 | 2 | 84 | 164 | 130 | 209 | 1.33e-21 | 91.3 |
| Msa0840660 | AT3G11280.2 | 41.538 | 130 | 68 | 3 | 83 | 206 | 115 | 242 | 1.50e-21 | 90.5 |
| Msa0840660 | AT3G11280.1 | 41.538 | 130 | 68 | 3 | 83 | 206 | 115 | 242 | 1.50e-21 | 90.5 |
| Msa0840660 | AT5G47390.1 | 47.475 | 99 | 45 | 3 | 84 | 181 | 89 | 181 | 3.75e-21 | 90.9 |
| Msa0840660 | AT5G61620.1 | 46.154 | 130 | 46 | 6 | 84 | 205 | 101 | 214 | 4.45e-21 | 90.1 |
| Msa0840660 | AT5G01200.1 | 57.333 | 75 | 29 | 2 | 91 | 164 | 142 | 214 | 1.17e-20 | 88.2 |
| Msa0840660 | AT5G05790.2 | 52.273 | 88 | 36 | 2 | 83 | 166 | 119 | 204 | 1.25e-19 | 85.5 |
| Msa0840660 | AT5G05790.1 | 52.273 | 88 | 36 | 2 | 83 | 166 | 119 | 204 | 1.25e-19 | 85.5 |
| Msa0840660 | AT5G56840.1 | 52.857 | 70 | 32 | 1 | 91 | 160 | 87 | 155 | 1.40e-18 | 82.0 |
| Msa0840660 | AT3G16350.1 | 54.054 | 74 | 32 | 2 | 70 | 142 | 112 | 184 | 3.62e-18 | 82.8 |
| Msa0840660 | AT1G19000.2 | 53.247 | 77 | 30 | 2 | 65 | 141 | 78 | 148 | 8.15e-18 | 80.9 |
| Msa0840660 | AT1G19000.1 | 53.247 | 77 | 30 | 2 | 65 | 141 | 78 | 148 | 8.15e-18 | 80.9 |
| Msa0840660 | AT1G70000.1 | 43.810 | 105 | 51 | 3 | 42 | 142 | 45 | 145 | 8.98e-18 | 80.1 |
| Msa0840660 | AT1G70000.2 | 43.810 | 105 | 51 | 3 | 42 | 142 | 45 | 145 | 8.98e-18 | 80.1 |
| Msa0840660 | AT1G74840.2 | 53.947 | 76 | 31 | 1 | 66 | 141 | 71 | 142 | 1.77e-17 | 79.0 |
| Msa0840660 | AT1G74840.1 | 53.947 | 76 | 31 | 1 | 66 | 141 | 71 | 142 | 2.10e-17 | 79.3 |
| Msa0840660 | AT4G09450.1 | 51.351 | 74 | 34 | 1 | 90 | 163 | 86 | 157 | 4.98e-17 | 77.0 |
| Msa0840660 | AT3G10590.1 | 42.708 | 96 | 51 | 2 | 69 | 163 | 84 | 176 | 5.04e-15 | 71.6 |
Find 42 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTACATCTTTCACATTT+TGG | 0.117923 | 5_4:-16508851 | None:intergenic |
| TGAGAAGATGCGCGACTTAT+TGG | 0.189075 | 5_4:+16509094 | Msa0840660:CDS |
| TGTGATGTATAGGTTGTTTC+TGG | 0.210646 | 5_4:+16508719 | Msa0840660:intron |
| TCCAATCGGTTCTACAATTC+CGG | 0.270420 | 5_4:+16509058 | Msa0840660:CDS |
| TTAGCTTCATTACTTCCTTC+AGG | 0.334459 | 5_4:-16507889 | None:intergenic |
| TTCTCAAGTTTCTCTATATC+CGG | 0.389268 | 5_4:-16509077 | None:intergenic |
| GCATGGCTAGCTATTTGAAT+TGG | 0.389834 | 5_4:-16508810 | None:intergenic |
| AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5_4:+16508776 | Msa0840660:CDS |
| TGGAAGGAATCTCATCTTGT+TGG | 0.451198 | 5_4:-16508947 | None:intergenic |
| TTGTGCTTGCTTTGTCCAAT+CGG | 0.452519 | 5_4:+16509044 | Msa0840660:CDS |
| AATGAGCGGACTTCAATTCA+AGG | 0.465890 | 5_4:+16507742 | Msa0840660:CDS |
| CAAAGAGAGGGCGTAGGGAA+AGG | 0.497543 | 5_4:+16507953 | Msa0840660:CDS |
| AAAGAGAGGGCGTAGGGAAA+GGG | 0.499642 | 5_4:+16507954 | Msa0840660:CDS |
| TGTTATAGGAACATGGAAGA+AGG | 0.512958 | 5_4:+16507682 | None:intergenic |
| GGAAGTAATGAAGCTAACTT+AGG | 0.518501 | 5_4:+16507895 | Msa0840660:CDS |
| GACACAAGCTTAAACAAGAA+TGG | 0.520303 | 5_4:+16508900 | Msa0840660:CDS |
| ATGTGAAAGATGTAGAGAAG+AGG | 0.526828 | 5_4:+16508856 | Msa0840660:CDS |
| ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 5_4:+16508723 | Msa0840660:intron |
| GTCTGTTGCATTCCTTGAGG+AGG | 0.550846 | 5_4:-16508990 | None:intergenic |
| TGTTCCATGCTATTCTCAGA+GGG | 0.555847 | 5_4:-16507766 | None:intergenic |
| TTGTTCCATGCTATTCTCAG+AGG | 0.560192 | 5_4:-16507767 | None:intergenic |
| TAGGGAAAGGGTACATTGGA+CGG | 0.560493 | 5_4:+16507966 | Msa0840660:CDS |
| TCCGGAATTGTAGAACCGAT+TGG | 0.561152 | 5_4:-16509059 | None:intergenic |
| TGTATAGGTTGTTTCTGGAG+GGG | 0.562950 | 5_4:+16508724 | Msa0840660:intron |
| GTGAAGCAAAGAGAGGGCGT+AGG | 0.568855 | 5_4:+16507947 | Msa0840660:CDS |
| TTCATTAGAGTTTAGCATTG+CGG | 0.571002 | 5_4:-16507839 | None:intergenic |
| GGCGTAGGGAAAGGGTACAT+TGG | 0.572735 | 5_4:+16507962 | Msa0840660:CDS |
| CAAAATGAAACTCCTCCTCA+AGG | 0.584892 | 5_4:+16508978 | Msa0840660:CDS |
| GGACAAAGCAAGCACAACAT+TGG | 0.587274 | 5_4:-16509038 | None:intergenic |
| GAAAGGGTACATTGGACGGA+AGG | 0.588233 | 5_4:+16507970 | Msa0840660:CDS |
| TGAAGCAAAGAGAGGGCGTA+GGG | 0.595570 | 5_4:+16507948 | Msa0840660:CDS |
| CAAGCTGAGTCAGTACAAGA+AGG | 0.604309 | 5_4:+16507919 | Msa0840660:CDS |
| GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 5_4:+16508722 | Msa0840660:intron |
| CAAGCTGAGTCAGTACCTGA+AGG | 0.616539 | 5_4:+16507874 | Msa0840660:CDS |
| CGACACTGATGTCATTGAGT+CGG | 0.619037 | 5_4:+16507807 | Msa0840660:CDS |
| ATCATATCGATTTAAATGAG+CGG | 0.624082 | 5_4:+16507728 | Msa0840660:CDS |
| TCATTTAAATCGATATGATG+AGG | 0.628741 | 5_4:-16507724 | None:intergenic |
| GGAAGTCGTGAAGCAAAGAG+AGG | 0.632062 | 5_4:+16507940 | Msa0840660:CDS |
| AGGTCCCTCTGAGAATAGCA+TGG | 0.632380 | 5_4:+16507762 | Msa0840660:CDS |
| GAAGTCGTGAAGCAAAGAGA+GGG | 0.647998 | 5_4:+16507941 | Msa0840660:CDS |
| ATTAGAGTTTAGCATTGCGG+CGG | 0.651248 | 5_4:-16507836 | None:intergenic |
| TGTGTCTGTTGCATTCCTTG+AGG | 0.673315 | 5_4:-16508993 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAAATATAAATTTTGTTT+TGG | + | chr5_4:16508086-16508105 | Msa0840660:intron | 10.0% |
| !! | TAGAATTGAAAAAAAAAATA+TGG | - | chr5_4:16508224-16508243 | None:intergenic | 10.0% |
| !!! | TTTTTTTTCAATTCTATTTT+AGG | + | chr5_4:16508228-16508247 | Msa0840660:intron | 10.0% |
| !!! | TACAAATATAAATTTTGTTT+TGG | + | chr5_4:16508086-16508105 | Msa0840660:intron | 10.0% |
| !! | TAGAATTGAAAAAAAAAATA+TGG | - | chr5_4:16508224-16508243 | None:intergenic | 10.0% |
| !!! | TTTTTTTTCAATTCTATTTT+AGG | + | chr5_4:16508228-16508247 | Msa0840660:intron | 10.0% |
| !! | AAAAATATATATAACTTCCA+AGG | - | chr5_4:16508022-16508041 | None:intergenic | 15.0% |
| !!! | TGGAAGTTATATATATTTTT+TGG | + | chr5_4:16508022-16508041 | Msa0840660:intron | 15.0% |
| !! | AAATGTAAATACATATCAAT+TGG | - | chr5_4:16508436-16508455 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAAATCAATTCA+AGG | + | chr5_4:16508604-16508623 | Msa0840660:intron | 15.0% |
| !! | AGAAAAAAAAATCAATTCAA+GGG | + | chr5_4:16508605-16508624 | Msa0840660:intron | 15.0% |
| !! | AAAAATATATATAACTTCCA+AGG | - | chr5_4:16508022-16508041 | None:intergenic | 15.0% |
| !!! | TGGAAGTTATATATATTTTT+TGG | + | chr5_4:16508022-16508041 | Msa0840660:intron | 15.0% |
| !! | AAATGTAAATACATATCAAT+TGG | - | chr5_4:16508436-16508455 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAAATCAATTCA+AGG | + | chr5_4:16508604-16508623 | Msa0840660:intron | 15.0% |
| !! | AGAAAAAAAAATCAATTCAA+GGG | + | chr5_4:16508605-16508624 | Msa0840660:intron | 15.0% |
| !!! | AAAAACTTAGTTGTTTTGAA+TGG | + | chr5_4:16508159-16508178 | Msa0840660:intron | 20.0% |
| !!! | TTCTATAATTTGTGATGTAT+AGG | + | chr5_4:16508709-16508728 | Msa0840660:intron | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | + | chr5_4:16508776-16508795 | Msa0840660:CDS | 20.0% |
| !!! | AAAAACTTAGTTGTTTTGAA+TGG | + | chr5_4:16508159-16508178 | Msa0840660:intron | 20.0% |
| !!! | TTCTATAATTTGTGATGTAT+AGG | + | chr5_4:16508709-16508728 | Msa0840660:intron | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | + | chr5_4:16508776-16508795 | Msa0840660:CDS | 20.0% |
| ! | TCATTTAAATCGATATGATG+AGG | - | chr5_4:16507727-16507746 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | + | chr5_4:16507728-16507747 | Msa0840660:CDS | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | + | chr5_4:16508560-16508579 | Msa0840660:intron | 25.0% |
| !!! | TTGGTGGATAAAGTATTTTT+GGG | - | chr5_4:16508835-16508854 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGTATTTT+TGG | - | chr5_4:16508836-16508855 | None:intergenic | 25.0% |
| ! | TCATTTAAATCGATATGATG+AGG | - | chr5_4:16507727-16507746 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | + | chr5_4:16507728-16507747 | Msa0840660:CDS | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | + | chr5_4:16508560-16508579 | Msa0840660:intron | 25.0% |
| !!! | TTGGTGGATAAAGTATTTTT+GGG | - | chr5_4:16508835-16508854 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGTATTTT+TGG | - | chr5_4:16508836-16508855 | None:intergenic | 25.0% |
| TTCATTAGAGTTTAGCATTG+CGG | - | chr5_4:16507842-16507861 | None:intergenic | 30.0% | |
| GTAAGTATTCAATCTATCCT+TGG | + | chr5_4:16508002-16508021 | Msa0840660:intron | 30.0% | |
| ! | CATATCAATTGGTAGTTACA+AGG | - | chr5_4:16508425-16508444 | None:intergenic | 30.0% |
| ! | TCTCTACATCTTTCACATTT+TGG | - | chr5_4:16508854-16508873 | None:intergenic | 30.0% |
| TTCTCAAGTTTCTCTATATC+CGG | - | chr5_4:16509080-16509099 | None:intergenic | 30.0% | |
| TTCATTAGAGTTTAGCATTG+CGG | - | chr5_4:16507842-16507861 | None:intergenic | 30.0% | |
| GTAAGTATTCAATCTATCCT+TGG | + | chr5_4:16508002-16508021 | Msa0840660:intron | 30.0% | |
| ! | CATATCAATTGGTAGTTACA+AGG | - | chr5_4:16508425-16508444 | None:intergenic | 30.0% |
| ! | TCTCTACATCTTTCACATTT+TGG | - | chr5_4:16508854-16508873 | None:intergenic | 30.0% |
| TTCTCAAGTTTCTCTATATC+CGG | - | chr5_4:16509080-16509099 | None:intergenic | 30.0% | |
| TTAGCTTCATTACTTCCTTC+AGG | - | chr5_4:16507892-16507911 | None:intergenic | 35.0% | |
| GGAAGTAATGAAGCTAACTT+AGG | + | chr5_4:16507895-16507914 | Msa0840660:CDS | 35.0% | |
| AATGTTAACTAGTGTCCCAA+GGG | - | chr5_4:16508195-16508214 | None:intergenic | 35.0% | |
| TAATGTTAACTAGTGTCCCA+AGG | - | chr5_4:16508196-16508215 | None:intergenic | 35.0% | |
| ! | TTCAAGGGTTTGCATTGTTT+TGG | + | chr5_4:16508620-16508639 | Msa0840660:intron | 35.0% |
| ! | TCAAGGGTTTGCATTGTTTT+GGG | + | chr5_4:16508621-16508640 | Msa0840660:intron | 35.0% |
| ! | TGTGATGTATAGGTTGTTTC+TGG | + | chr5_4:16508719-16508738 | Msa0840660:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | + | chr5_4:16508723-16508742 | Msa0840660:intron | 35.0% |
| GGGCTAGAAAAATATGGTAA+GGG | + | chr5_4:16508744-16508763 | Msa0840660:CDS | 35.0% | |
| AAAAATATGGTAAGGGACGT+TGG | + | chr5_4:16508751-16508770 | Msa0840660:CDS | 35.0% | |
| !!! | GGATAAAGTATTTTTGGGCA+TGG | - | chr5_4:16508830-16508849 | None:intergenic | 35.0% |
| ! | CTACATCTTTCACATTTTGG+TGG | - | chr5_4:16508851-16508870 | None:intergenic | 35.0% |
| ATGTGAAAGATGTAGAGAAG+AGG | + | chr5_4:16508856-16508875 | Msa0840660:CDS | 35.0% | |
| GACACAAGCTTAAACAAGAA+TGG | + | chr5_4:16508900-16508919 | Msa0840660:CDS | 35.0% | |
| ! | AGTTTCATTTTGCTGCTCAA+TGG | - | chr5_4:16508970-16508989 | None:intergenic | 35.0% |
| TTAGCTTCATTACTTCCTTC+AGG | - | chr5_4:16507892-16507911 | None:intergenic | 35.0% | |
| GGAAGTAATGAAGCTAACTT+AGG | + | chr5_4:16507895-16507914 | Msa0840660:CDS | 35.0% | |
| AATGTTAACTAGTGTCCCAA+GGG | - | chr5_4:16508195-16508214 | None:intergenic | 35.0% | |
| TAATGTTAACTAGTGTCCCA+AGG | - | chr5_4:16508196-16508215 | None:intergenic | 35.0% | |
| ! | TTCAAGGGTTTGCATTGTTT+TGG | + | chr5_4:16508620-16508639 | Msa0840660:intron | 35.0% |
| ! | TCAAGGGTTTGCATTGTTTT+GGG | + | chr5_4:16508621-16508640 | Msa0840660:intron | 35.0% |
| ! | TGTGATGTATAGGTTGTTTC+TGG | + | chr5_4:16508719-16508738 | Msa0840660:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | + | chr5_4:16508723-16508742 | Msa0840660:intron | 35.0% |
| GGGCTAGAAAAATATGGTAA+GGG | + | chr5_4:16508744-16508763 | Msa0840660:CDS | 35.0% | |
| AAAAATATGGTAAGGGACGT+TGG | + | chr5_4:16508751-16508770 | Msa0840660:CDS | 35.0% | |
| !!! | GGATAAAGTATTTTTGGGCA+TGG | - | chr5_4:16508830-16508849 | None:intergenic | 35.0% |
| ! | CTACATCTTTCACATTTTGG+TGG | - | chr5_4:16508851-16508870 | None:intergenic | 35.0% |
| ATGTGAAAGATGTAGAGAAG+AGG | + | chr5_4:16508856-16508875 | Msa0840660:CDS | 35.0% | |
| GACACAAGCTTAAACAAGAA+TGG | + | chr5_4:16508900-16508919 | Msa0840660:CDS | 35.0% | |
| ! | AGTTTCATTTTGCTGCTCAA+TGG | - | chr5_4:16508970-16508989 | None:intergenic | 35.0% |
| ! | AATGAGCGGACTTCAATTCA+AGG | + | chr5_4:16507742-16507761 | Msa0840660:CDS | 40.0% |
| TGTTCCATGCTATTCTCAGA+GGG | - | chr5_4:16507769-16507788 | None:intergenic | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | - | chr5_4:16507770-16507789 | None:intergenic | 40.0% | |
| ATTAGAGTTTAGCATTGCGG+CGG | - | chr5_4:16507839-16507858 | None:intergenic | 40.0% | |
| TTCCTTAACCATTGCCCTAA+GGG | - | chr5_4:16508064-16508083 | None:intergenic | 40.0% | |
| ATTCCTTAACCATTGCCCTA+AGG | - | chr5_4:16508065-16508084 | None:intergenic | 40.0% | |
| AATGGTTAACCAATGCCCTT+GGG | + | chr5_4:16508177-16508196 | Msa0840660:intron | 40.0% | |
| AGTGACTAGACACTCAACTT+TGG | + | chr5_4:16508356-16508375 | Msa0840660:intron | 40.0% | |
| CAAGGATGTTGATCTACATG+CGG | - | chr5_4:16508407-16508426 | None:intergenic | 40.0% | |
| !! | GATGTATAGGTTGTTTCTGG+AGG | + | chr5_4:16508722-16508741 | Msa0840660:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | + | chr5_4:16508724-16508743 | Msa0840660:intron | 40.0% |
| GGGGCTAGAAAAATATGGTA+AGG | + | chr5_4:16508743-16508762 | Msa0840660:CDS | 40.0% | |
| ! | GCATGGCTAGCTATTTGAAT+TGG | - | chr5_4:16508813-16508832 | None:intergenic | 40.0% |
| TGGAAGGAATCTCATCTTGT+TGG | - | chr5_4:16508950-16508969 | None:intergenic | 40.0% | |
| ! | TCATTTTGCTGCTCAATGGA+AGG | - | chr5_4:16508966-16508985 | None:intergenic | 40.0% |
| CAAAATGAAACTCCTCCTCA+AGG | + | chr5_4:16508978-16508997 | Msa0840660:CDS | 40.0% | |
| TTGTGCTTGCTTTGTCCAAT+CGG | + | chr5_4:16509044-16509063 | Msa0840660:CDS | 40.0% | |
| ! | TCCAATCGGTTCTACAATTC+CGG | + | chr5_4:16509058-16509077 | Msa0840660:CDS | 40.0% |
| ! | AATGAGCGGACTTCAATTCA+AGG | + | chr5_4:16507742-16507761 | Msa0840660:CDS | 40.0% |
| TGTTCCATGCTATTCTCAGA+GGG | - | chr5_4:16507769-16507788 | None:intergenic | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | - | chr5_4:16507770-16507789 | None:intergenic | 40.0% | |
| ATTAGAGTTTAGCATTGCGG+CGG | - | chr5_4:16507839-16507858 | None:intergenic | 40.0% | |
| TTCCTTAACCATTGCCCTAA+GGG | - | chr5_4:16508064-16508083 | None:intergenic | 40.0% | |
| ATTCCTTAACCATTGCCCTA+AGG | - | chr5_4:16508065-16508084 | None:intergenic | 40.0% | |
| AATGGTTAACCAATGCCCTT+GGG | + | chr5_4:16508177-16508196 | Msa0840660:intron | 40.0% | |
| AGTGACTAGACACTCAACTT+TGG | + | chr5_4:16508356-16508375 | Msa0840660:intron | 40.0% | |
| CAAGGATGTTGATCTACATG+CGG | - | chr5_4:16508407-16508426 | None:intergenic | 40.0% | |
| !! | GATGTATAGGTTGTTTCTGG+AGG | + | chr5_4:16508722-16508741 | Msa0840660:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | + | chr5_4:16508724-16508743 | Msa0840660:intron | 40.0% |
| GGGGCTAGAAAAATATGGTA+AGG | + | chr5_4:16508743-16508762 | Msa0840660:CDS | 40.0% | |
| ! | GCATGGCTAGCTATTTGAAT+TGG | - | chr5_4:16508813-16508832 | None:intergenic | 40.0% |
| TGGAAGGAATCTCATCTTGT+TGG | - | chr5_4:16508950-16508969 | None:intergenic | 40.0% | |
| ! | TCATTTTGCTGCTCAATGGA+AGG | - | chr5_4:16508966-16508985 | None:intergenic | 40.0% |
| CAAAATGAAACTCCTCCTCA+AGG | + | chr5_4:16508978-16508997 | Msa0840660:CDS | 40.0% | |
| TTGTGCTTGCTTTGTCCAAT+CGG | + | chr5_4:16509044-16509063 | Msa0840660:CDS | 40.0% | |
| ! | TCCAATCGGTTCTACAATTC+CGG | + | chr5_4:16509058-16509077 | Msa0840660:CDS | 40.0% |
| CGACACTGATGTCATTGAGT+CGG | + | chr5_4:16507807-16507826 | Msa0840660:CDS | 45.0% | |
| CAAGCTGAGTCAGTACAAGA+AGG | + | chr5_4:16507919-16507938 | Msa0840660:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | + | chr5_4:16507941-16507960 | Msa0840660:CDS | 45.0% | |
| ! | TAGGGAAAGGGTACATTGGA+CGG | + | chr5_4:16507966-16507985 | Msa0840660:CDS | 45.0% |
| GAATGGTTAACCAATGCCCT+TGG | + | chr5_4:16508176-16508195 | Msa0840660:intron | 45.0% | |
| CTGGAGGGGCTAGAAAAATA+TGG | + | chr5_4:16508738-16508757 | Msa0840660:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | - | chr5_4:16508996-16509015 | None:intergenic | 45.0% | |
| GGACAAAGCAAGCACAACAT+TGG | - | chr5_4:16509041-16509060 | None:intergenic | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | - | chr5_4:16509062-16509081 | None:intergenic | 45.0% | |
| TGAGAAGATGCGCGACTTAT+TGG | + | chr5_4:16509094-16509113 | Msa0840660:CDS | 45.0% | |
| CGACACTGATGTCATTGAGT+CGG | + | chr5_4:16507807-16507826 | Msa0840660:CDS | 45.0% | |
| CAAGCTGAGTCAGTACAAGA+AGG | + | chr5_4:16507919-16507938 | Msa0840660:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | + | chr5_4:16507941-16507960 | Msa0840660:CDS | 45.0% | |
| ! | TAGGGAAAGGGTACATTGGA+CGG | + | chr5_4:16507966-16507985 | Msa0840660:CDS | 45.0% |
| GAATGGTTAACCAATGCCCT+TGG | + | chr5_4:16508176-16508195 | Msa0840660:intron | 45.0% | |
| CTGGAGGGGCTAGAAAAATA+TGG | + | chr5_4:16508738-16508757 | Msa0840660:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | - | chr5_4:16508996-16509015 | None:intergenic | 45.0% | |
| GGACAAAGCAAGCACAACAT+TGG | - | chr5_4:16509041-16509060 | None:intergenic | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | - | chr5_4:16509062-16509081 | None:intergenic | 45.0% | |
| TGAGAAGATGCGCGACTTAT+TGG | + | chr5_4:16509094-16509113 | Msa0840660:CDS | 45.0% | |
| ! | AGGTCCCTCTGAGAATAGCA+TGG | + | chr5_4:16507762-16507781 | Msa0840660:CDS | 50.0% |
| CAAGCTGAGTCAGTACCTGA+AGG | + | chr5_4:16507874-16507893 | Msa0840660:CDS | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | + | chr5_4:16507940-16507959 | Msa0840660:CDS | 50.0% | |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | + | chr5_4:16507948-16507967 | Msa0840660:CDS | 50.0% |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | + | chr5_4:16507954-16507973 | Msa0840660:CDS | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | + | chr5_4:16507970-16507989 | Msa0840660:CDS | 50.0% |
| TGCCCTTAGGGCAATGGTTA+AGG | + | chr5_4:16508059-16508078 | Msa0840660:intron | 50.0% | |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | - | chr5_4:16508189-16508208 | None:intergenic | 50.0% |
| GTCTGTTGCATTCCTTGAGG+AGG | - | chr5_4:16508993-16509012 | None:intergenic | 50.0% | |
| ! | AGGTCCCTCTGAGAATAGCA+TGG | + | chr5_4:16507762-16507781 | Msa0840660:CDS | 50.0% |
| CAAGCTGAGTCAGTACCTGA+AGG | + | chr5_4:16507874-16507893 | Msa0840660:CDS | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | + | chr5_4:16507940-16507959 | Msa0840660:CDS | 50.0% | |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | + | chr5_4:16507948-16507967 | Msa0840660:CDS | 50.0% |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | + | chr5_4:16507954-16507973 | Msa0840660:CDS | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | + | chr5_4:16507970-16507989 | Msa0840660:CDS | 50.0% |
| TGCCCTTAGGGCAATGGTTA+AGG | + | chr5_4:16508059-16508078 | Msa0840660:intron | 50.0% | |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | - | chr5_4:16508189-16508208 | None:intergenic | 50.0% |
| GTCTGTTGCATTCCTTGAGG+AGG | - | chr5_4:16508993-16509012 | None:intergenic | 50.0% | |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | + | chr5_4:16507947-16507966 | Msa0840660:CDS | 55.0% |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | + | chr5_4:16507953-16507972 | Msa0840660:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5_4:16507962-16507981 | Msa0840660:CDS | 55.0% |
| TCTTGCCAACCAGTGCCCTT+AGG | + | chr5_4:16508046-16508065 | Msa0840660:intron | 55.0% | |
| CTTGCCAACCAGTGCCCTTA+GGG | + | chr5_4:16508047-16508066 | Msa0840660:intron | 55.0% | |
| !! | ATTGCCCTAAGGGCACTGGT+TGG | - | chr5_4:16508054-16508073 | None:intergenic | 55.0% |
| AACCAGTGCCCTTAGGGCAA+TGG | + | chr5_4:16508053-16508072 | Msa0840660:intron | 55.0% | |
| ! | AACCATTGCCCTAAGGGCAC+TGG | - | chr5_4:16508058-16508077 | None:intergenic | 55.0% |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | + | chr5_4:16507947-16507966 | Msa0840660:CDS | 55.0% |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | + | chr5_4:16507953-16507972 | Msa0840660:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5_4:16507962-16507981 | Msa0840660:CDS | 55.0% |
| TCTTGCCAACCAGTGCCCTT+AGG | + | chr5_4:16508046-16508065 | Msa0840660:intron | 55.0% | |
| CTTGCCAACCAGTGCCCTTA+GGG | + | chr5_4:16508047-16508066 | Msa0840660:intron | 55.0% | |
| !! | ATTGCCCTAAGGGCACTGGT+TGG | - | chr5_4:16508054-16508073 | None:intergenic | 55.0% |
| AACCAGTGCCCTTAGGGCAA+TGG | + | chr5_4:16508053-16508072 | Msa0840660:intron | 55.0% | |
| ! | AACCATTGCCCTAAGGGCAC+TGG | - | chr5_4:16508058-16508077 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 16507694 | 16509136 | 16507694 | ID=Msa0840660;Name=Msa0840660 |
| chr5_4 | mRNA | 16507694 | 16509136 | 16507694 | ID=Msa0840660-mRNA-1;Parent=Msa0840660;Name=Msa0840660-mRNA-1;_AED=0.01;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|237 |
| chr5_4 | exon | 16507694 | 16508001 | 16507694 | ID=Msa0840660-mRNA-1:exon:7084;Parent=Msa0840660-mRNA-1 |
| chr5_4 | exon | 16508731 | 16509136 | 16508731 | ID=Msa0840660-mRNA-1:exon:7085;Parent=Msa0840660-mRNA-1 |
| chr5_4 | CDS | 16507694 | 16508001 | 16507694 | ID=Msa0840660-mRNA-1:cds;Parent=Msa0840660-mRNA-1 |
| chr5_4 | CDS | 16508731 | 16509136 | 16508731 | ID=Msa0840660-mRNA-1:cds;Parent=Msa0840660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
