Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840690 | XP_003612667.1 | 70.667 | 225 | 47 | 4 | 119 | 328 | 11 | 231 | 1.42e-95 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840690 | sp|Q9FNN6|SRM1_ARATH | 47.525 | 101 | 51 | 1 | 168 | 268 | 85 | 183 | 3.27e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840690 | G7K885 | 70.667 | 225 | 47 | 4 | 119 | 328 | 11 | 231 | 6.78e-96 | 293 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0840690 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840690 | MtrunA17_Chr5g0409841 | 70.667 | 225 | 47 | 4 | 119 | 328 | 11 | 231 | 1.31e-99 | 293 |
| Msa0840690 | MtrunA17_Chr5g0409831 | 62.128 | 235 | 48 | 6 | 119 | 328 | 11 | 229 | 9.06e-81 | 245 |
| Msa0840690 | MtrunA17_Chr5g0440731 | 53.986 | 276 | 54 | 6 | 118 | 328 | 27 | 294 | 3.87e-80 | 246 |
| Msa0840690 | MtrunA17_Chr5g0440741 | 52.313 | 281 | 56 | 7 | 113 | 328 | 22 | 289 | 2.72e-77 | 238 |
| Msa0840690 | MtrunA17_Chr5g0440821 | 48.936 | 188 | 21 | 5 | 1 | 118 | 1 | 183 | 1.32e-40 | 151 |
| Msa0840690 | MtrunA17_Chr5g0409951 | 58.915 | 129 | 17 | 1 | 26 | 118 | 110 | 238 | 3.79e-39 | 139 |
| Msa0840690 | MtrunA17_Chr5g0409951 | 51.765 | 85 | 27 | 2 | 122 | 205 | 38 | 109 | 3.03e-14 | 71.6 |
| Msa0840690 | MtrunA17_Chr5g0440721 | 57.576 | 132 | 29 | 3 | 1 | 118 | 1 | 119 | 4.55e-34 | 122 |
| Msa0840690 | MtrunA17_Chr5g0409941 | 54.198 | 131 | 19 | 3 | 1 | 116 | 1 | 105 | 1.94e-30 | 111 |
| Msa0840690 | MtrunA17_Chr1g0162081 | 53.333 | 90 | 38 | 3 | 188 | 276 | 110 | 196 | 5.81e-24 | 99.4 |
| Msa0840690 | MtrunA17_Chr3g0104071 | 41.007 | 139 | 66 | 3 | 145 | 282 | 104 | 227 | 3.46e-23 | 97.8 |
| Msa0840690 | MtrunA17_Chr4g0055931 | 36.424 | 151 | 76 | 5 | 151 | 297 | 47 | 181 | 3.66e-22 | 95.1 |
| Msa0840690 | MtrunA17_Chr5g0436501 | 54.651 | 86 | 38 | 1 | 191 | 275 | 115 | 200 | 7.23e-22 | 93.2 |
| Msa0840690 | MtrunA17_Chr1g0210471 | 40.769 | 130 | 71 | 3 | 169 | 295 | 89 | 215 | 9.12e-22 | 92.4 |
| Msa0840690 | MtrunA17_Chr5g0429521 | 51.042 | 96 | 44 | 2 | 191 | 285 | 122 | 215 | 2.53e-21 | 92.4 |
| Msa0840690 | MtrunA17_Chr2g0331031 | 46.535 | 101 | 50 | 2 | 193 | 291 | 99 | 197 | 2.59e-21 | 93.2 |
| Msa0840690 | MtrunA17_Chr4g0062741 | 50.602 | 83 | 38 | 2 | 194 | 275 | 131 | 211 | 3.96e-21 | 91.7 |
| Msa0840690 | MtrunA17_Chr5g0440751 | 50.413 | 121 | 25 | 3 | 25 | 118 | 13 | 125 | 1.08e-20 | 88.2 |
| Msa0840690 | MtrunA17_Chr7g0241761 | 52.500 | 80 | 36 | 1 | 190 | 269 | 129 | 206 | 3.02e-20 | 89.4 |
| Msa0840690 | MtrunA17_Chr4g0059701 | 43.802 | 121 | 58 | 4 | 184 | 303 | 66 | 177 | 5.04e-19 | 85.5 |
| Msa0840690 | MtrunA17_Chr8g0364731 | 54.286 | 70 | 31 | 1 | 210 | 279 | 10 | 78 | 3.03e-18 | 81.3 |
| Msa0840690 | MtrunA17_Chr8g0365011 | 47.778 | 90 | 34 | 2 | 202 | 279 | 93 | 181 | 1.20e-17 | 81.6 |
| Msa0840690 | MtrunA17_Chr3g0135671 | 43.956 | 91 | 43 | 2 | 203 | 285 | 93 | 183 | 1.52e-17 | 80.5 |
| Msa0840690 | MtrunA17_Chr8g0389241 | 52.857 | 70 | 30 | 1 | 197 | 266 | 101 | 167 | 2.03e-17 | 80.9 |
| Msa0840690 | MtrunA17_Chr6g0488471 | 52.857 | 70 | 31 | 1 | 197 | 266 | 93 | 160 | 2.58e-17 | 80.9 |
| Msa0840690 | MtrunA17_Chr5g0415191 | 52.000 | 75 | 33 | 1 | 177 | 248 | 75 | 149 | 1.44e-16 | 79.0 |
| Msa0840690 | MtrunA17_Chr5g0432921 | 46.392 | 97 | 43 | 5 | 194 | 287 | 105 | 195 | 4.20e-16 | 76.3 |
| Msa0840690 | MtrunA17_Chr5g0432941 | 38.655 | 119 | 61 | 5 | 175 | 287 | 83 | 195 | 1.19e-15 | 75.1 |
| Msa0840690 | MtrunA17_Chr3g0092621 | 44.444 | 72 | 38 | 1 | 200 | 271 | 83 | 152 | 5.72e-15 | 72.0 |
| Msa0840690 | MtrunA17_Chr1g0192061 | 48.718 | 78 | 34 | 3 | 200 | 274 | 60 | 134 | 8.87e-15 | 71.6 |
| Msa0840690 | MtrunA17_Chr6g0452791 | 52.632 | 57 | 27 | 0 | 203 | 259 | 82 | 138 | 1.53e-14 | 70.9 |
| Msa0840690 | MtrunA17_Chr3g0113121 | 51.389 | 72 | 30 | 1 | 202 | 268 | 96 | 167 | 1.56e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840690 | AT5G08520.1 | 47.525 | 101 | 51 | 1 | 168 | 268 | 85 | 183 | 3.33e-24 | 100 |
| Msa0840690 | AT1G49010.1 | 50.549 | 91 | 42 | 2 | 193 | 282 | 126 | 214 | 3.36e-22 | 95.5 |
| Msa0840690 | AT5G58900.1 | 54.762 | 84 | 35 | 2 | 188 | 270 | 128 | 209 | 5.83e-22 | 94.4 |
| Msa0840690 | AT5G23650.1 | 44.444 | 117 | 60 | 2 | 161 | 277 | 83 | 194 | 8.03e-22 | 94.7 |
| Msa0840690 | AT5G04760.1 | 51.807 | 83 | 38 | 1 | 186 | 268 | 84 | 164 | 1.07e-21 | 92.0 |
| Msa0840690 | AT2G38090.1 | 47.748 | 111 | 49 | 4 | 171 | 274 | 105 | 213 | 1.31e-21 | 93.6 |
| Msa0840690 | AT5G05790.2 | 47.475 | 99 | 49 | 2 | 186 | 283 | 116 | 212 | 3.23e-20 | 89.4 |
| Msa0840690 | AT5G05790.1 | 47.475 | 99 | 49 | 2 | 186 | 283 | 116 | 212 | 3.23e-20 | 89.4 |
| Msa0840690 | AT3G11280.2 | 51.111 | 90 | 38 | 2 | 187 | 272 | 113 | 200 | 8.35e-20 | 87.8 |
| Msa0840690 | AT3G11280.1 | 51.111 | 90 | 38 | 2 | 187 | 272 | 113 | 200 | 8.35e-20 | 87.8 |
| Msa0840690 | AT5G01200.1 | 53.846 | 78 | 33 | 2 | 194 | 270 | 139 | 214 | 1.48e-19 | 87.0 |
| Msa0840690 | AT5G61620.1 | 51.136 | 88 | 33 | 2 | 203 | 282 | 110 | 195 | 6.81e-19 | 86.3 |
| Msa0840690 | AT5G47390.1 | 50.000 | 74 | 35 | 1 | 193 | 266 | 88 | 159 | 1.65e-18 | 85.5 |
| Msa0840690 | AT3G10580.2 | 42.857 | 98 | 49 | 3 | 185 | 280 | 77 | 169 | 1.73e-18 | 84.0 |
| Msa0840690 | AT3G10580.1 | 42.857 | 98 | 49 | 3 | 185 | 280 | 77 | 169 | 2.34e-18 | 84.3 |
| Msa0840690 | AT5G56840.1 | 54.286 | 70 | 31 | 1 | 197 | 266 | 87 | 155 | 3.88e-17 | 79.7 |
| Msa0840690 | AT1G74840.2 | 56.250 | 64 | 28 | 0 | 184 | 247 | 79 | 142 | 5.29e-17 | 79.3 |
| Msa0840690 | AT1G74840.1 | 56.250 | 64 | 28 | 0 | 184 | 247 | 79 | 142 | 5.67e-17 | 79.7 |
| Msa0840690 | AT3G16350.1 | 49.315 | 73 | 37 | 0 | 176 | 248 | 112 | 184 | 2.93e-16 | 79.3 |
| Msa0840690 | AT1G70000.1 | 59.322 | 59 | 21 | 1 | 193 | 248 | 87 | 145 | 5.35e-16 | 77.0 |
| Msa0840690 | AT1G70000.2 | 59.322 | 59 | 21 | 1 | 193 | 248 | 87 | 145 | 5.35e-16 | 77.0 |
| Msa0840690 | AT3G10590.1 | 30.769 | 208 | 97 | 7 | 93 | 289 | 22 | 193 | 9.28e-16 | 75.1 |
| Msa0840690 | AT4G09450.1 | 55.224 | 67 | 28 | 1 | 203 | 269 | 93 | 157 | 1.31e-15 | 74.7 |
| Msa0840690 | AT1G19000.2 | 47.191 | 89 | 37 | 3 | 159 | 247 | 70 | 148 | 2.06e-15 | 75.9 |
| Msa0840690 | AT1G19000.1 | 47.191 | 89 | 37 | 3 | 159 | 247 | 70 | 148 | 2.06e-15 | 75.9 |
Find 82 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTGTATCTTTCACATTT+TGG | 0.106986 | 5_4:-16552239 | None:intergenic |
| TGATGTGTCATTCTTGTTTA+AGG | 0.162194 | 5_4:-16552295 | None:intergenic |
| TGTGATATATAGGTTGTTTC+TGG | 0.162888 | 5_4:+16552107 | Msa0840690:intron |
| TCAACATGATTCTTAGGTTT+TGG | 0.214289 | 5_4:-16550682 | None:intergenic |
| ACATTCTCAACATGATTCTT+AGG | 0.253797 | 5_4:-16550688 | None:intergenic |
| CTCCTAAGAAAAGCAATTCT+TGG | 0.283841 | 5_4:+16550569 | Msa0840690:CDS |
| TTCTCAAGTTTGTTCATATC+AGG | 0.295923 | 5_4:-16552417 | None:intergenic |
| TATGCTTTCCCACCTGGTTC+AGG | 0.329227 | 5_4:+16550802 | Msa0840690:CDS |
| TTTGCTTCACGACTTCCTTC+TGG | 0.354439 | 5_4:-16551513 | None:intergenic |
| GCGCAACTTGTTCAACTTGT+TGG | 0.354873 | 5_4:+16552443 | Msa0840690:CDS |
| CCTGCATATGCTTTCCCACC+TGG | 0.358776 | 5_4:+16550796 | Msa0840690:CDS |
| GATGTTCCTGTGTTGGTTGT+TGG | 0.372353 | 5_4:+16550622 | Msa0840690:CDS |
| TGCTATGCTCAGAGGGATCT+TGG | 0.382368 | 5_4:-16551341 | None:intergenic |
| CGAACATTGCGCTTGGGGCC+TGG | 0.387615 | 5_4:-16550742 | None:intergenic |
| CCTACTGCCACCGGGGATAT+AGG | 0.422509 | 5_4:-16550853 | None:intergenic |
| GGCTTAGGATTCGCACCATT+CGG | 0.427062 | 5_4:-16550832 | None:intergenic |
| GGATTCGCACCATTCGGATA+AGG | 0.434047 | 5_4:-16550826 | None:intergenic |
| ACAGGACGAACATTGCGCTT+GGG | 0.437958 | 5_4:-16550748 | None:intergenic |
| GAACAACAACAGGAGAAAAC+TGG | 0.441684 | 5_4:+16551366 | Msa0840690:CDS |
| CACATCAGTCACTGCTCCTA+TGG | 0.448672 | 5_4:+16552311 | Msa0840690:CDS |
| AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5_4:+16552164 | Msa0840690:CDS |
| CACCTTGTCCTACTGCCACC+GGG | 0.457271 | 5_4:-16550861 | None:intergenic |
| AACTTAGTTCAAGCTGAGTC+AGG | 0.458703 | 5_4:+16551444 | Msa0840690:CDS |
| CACAGGACGAACATTGCGCT+TGG | 0.470103 | 5_4:-16550749 | None:intergenic |
| ATGACCCGACTCACTGATAT+CGG | 0.474612 | 5_4:-16551391 | None:intergenic |
| GAGGGATCTTGGACTGAAGC+TGG | 0.485915 | 5_4:-16551330 | None:intergenic |
| GCATAGCATGGAACAACAAC+AGG | 0.485938 | 5_4:+16551356 | Msa0840690:CDS |
| TTGGTGCTGCTCTGTCCAAT+CGG | 0.496082 | 5_4:+16552384 | Msa0840690:CDS |
| AAAGAGAAGGCGTAGGGAAA+GGG | 0.499642 | 5_4:+16551533 | Msa0840690:CDS |
| TGATAGCGTGGTGATGCCAC+AGG | 0.503741 | 5_4:-16550715 | None:intergenic |
| CTTGAGGTGGCTGTGTCTTG+AGG | 0.504065 | 5_4:-16552351 | None:intergenic |
| GGATTCTCATGTTGTTCCAT+AGG | 0.504821 | 5_4:-16552327 | None:intergenic |
| GGCACCGATATCAGTGAGTC+GGG | 0.505895 | 5_4:+16551387 | Msa0840690:CDS |
| ATATATAGGTTGTTTCTGGA+GGG | 0.506208 | 5_4:+16552111 | Msa0840690:intron |
| CACCAACTGCATTTGTCTTG+AGG | 0.508085 | 5_4:-16552367 | None:intergenic |
| TCACCTTGTCCTACTGCCAC+CGG | 0.510310 | 5_4:-16550862 | None:intergenic |
| TATATAGGTTGTTTCTGGAG+GGG | 0.512969 | 5_4:+16552112 | Msa0840690:intron |
| CAAAGAGAAGGCGTAGGGAA+AGG | 0.516592 | 5_4:+16551532 | Msa0840690:CDS |
| ATGTGAGTTGGAGGTGCCAC+AGG | 0.521985 | 5_4:-16550766 | None:intergenic |
| GCATGGCTAGCAATTTGAGT+TGG | 0.525594 | 5_4:-16552198 | None:intergenic |
| AGAAAGAGCTGGCCAAGACT+TGG | 0.528166 | 5_4:-16550647 | None:intergenic |
| GATATATAGGTTGTTTCTGG+AGG | 0.531218 | 5_4:+16552110 | Msa0840690:intron |
| CAGGACGAACATTGCGCTTG+GGG | 0.533224 | 5_4:-16550747 | None:intergenic |
| CAAGCTGAGTCAGGAGCAGA+AGG | 0.534197 | 5_4:+16551453 | Msa0840690:CDS |
| TGTTCCATGCTATGCTCAGA+GGG | 0.536332 | 5_4:-16551348 | None:intergenic |
| CCTATATCCCCGGTGGCAGT+AGG | 0.543855 | 5_4:+16550853 | Msa0840690:CDS |
| CAACTGCATTTGTCTTGAGG+TGG | 0.545901 | 5_4:-16552364 | None:intergenic |
| GCAGGAACAGCAATGTGAGT+TGG | 0.551521 | 5_4:-16550778 | None:intergenic |
| TGGTTGTTGGAACCAAGTCT+TGG | 0.553347 | 5_4:+16550635 | Msa0840690:CDS |
| GCCACCGGGGATATAGGCTT+AGG | 0.555820 | 5_4:-16550847 | None:intergenic |
| TTCGGATAAGGTCCTGAACC+AGG | 0.561660 | 5_4:-16550814 | None:intergenic |
| TCACCACGCTATCAAAAGCC+AGG | 0.565310 | 5_4:+16550724 | Msa0840690:CDS |
| TTGTTCCATGCTATGCTCAG+AGG | 0.567759 | 5_4:-16551349 | None:intergenic |
| CACCTCAAGACAAATGCAGT+TGG | 0.567812 | 5_4:+16552365 | Msa0840690:CDS |
| CAAGCGCAATGTTCGTCCTG+TGG | 0.574699 | 5_4:+16550750 | Msa0840690:CDS |
| GAGGTGGCTGTGTCTTGAGG+AGG | 0.576603 | 5_4:-16552348 | None:intergenic |
| TCAGGAAGTGTAGAACCGAT+TGG | 0.579196 | 5_4:-16552399 | None:intergenic |
| AAGTGTTGATGTTCCTGTGT+TGG | 0.580284 | 5_4:+16550615 | Msa0840690:CDS |
| TCCCCGGTGGCAGTAGGACA+AGG | 0.582355 | 5_4:+16550859 | Msa0840690:CDS |
| AGCAATTCTTGGAAGAAACC+TGG | 0.582472 | 5_4:+16550580 | Msa0840690:CDS |
| GGCGTAGGGAAAGGGTACAT+TGG | 0.585151 | 5_4:+16551541 | Msa0840690:CDS |
| GAAAGGGTACATTGGACAGA+AGG | 0.586417 | 5_4:+16551549 | Msa0840690:CDS |
| GTGAAGCAAAGAGAAGGCGT+AGG | 0.586517 | 5_4:+16551526 | Msa0840690:CDS |
| CCAGGTGGGAAAGCATATGC+AGG | 0.588904 | 5_4:-16550796 | None:intergenic |
| GTTTGAGCATCAGAAAGAGC+TGG | 0.591524 | 5_4:-16550658 | None:intergenic |
| TCTTGTTTAAGGTTGTGTCG+TGG | 0.595697 | 5_4:-16552284 | None:intergenic |
| AGATCCCTCTGAGCATAGCA+TGG | 0.596307 | 5_4:+16551344 | Msa0840690:CDS |
| TGGCACCGATATCAGTGAGT+CGG | 0.599539 | 5_4:+16551386 | Msa0840690:CDS |
| ATGTGAAAGATACAGAGAAG+AGG | 0.601303 | 5_4:+16552244 | Msa0840690:CDS |
| ATTAGAGTTTAGAATTGCGA+CGG | 0.604472 | 5_4:-16551415 | None:intergenic |
| GGAACAGCAATGTGAGTTGG+AGG | 0.613590 | 5_4:-16550775 | None:intergenic |
| CAAGCTGAGTCAGTACCAGA+AGG | 0.630435 | 5_4:+16551498 | Msa0840690:CDS |
| GAAGTCGTGAAGCAAAGAGA+AGG | 0.632257 | 5_4:+16551520 | Msa0840690:CDS |
| TGAAGCAAAGAGAAGGCGTA+GGG | 0.634488 | 5_4:+16551527 | Msa0840690:CDS |
| GGTTCAGGACCTTATCCGAA+TGG | 0.638603 | 5_4:+16550817 | Msa0840690:CDS |
| GAATCCTAAGCCTATATCCC+CGG | 0.639501 | 5_4:+16550843 | Msa0840690:CDS |
| GATAAGGTCCTGAACCAGGT+GGG | 0.657071 | 5_4:-16550810 | None:intergenic |
| TTGGTTCCAACAACCAACAC+AGG | 0.665985 | 5_4:-16550628 | None:intergenic |
| TGTTGAGAATGTTCGTCCTG+TGG | 0.681853 | 5_4:+16550699 | Msa0840690:CDS |
| TCCTAAGCCTATATCCCCGG+TGG | 0.696743 | 5_4:+16550846 | Msa0840690:CDS |
| GGATAAGGTCCTGAACCAGG+TGG | 0.699303 | 5_4:-16550811 | None:intergenic |
| ACCTTGTCCTACTGCCACCG+GGG | 0.705208 | 5_4:-16550860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTAACTTACATAAT+TGG | + | chr5_4:16551031-16551050 | Msa0840690:intron | 15.0% |
| !!! | AATTCTTATAGTTGTTTTTT+TGG | + | chr5_4:16551270-16551289 | Msa0840690:intron | 15.0% |
| !!! | TTCTTTTTCAATTCTATTTT+AGG | + | chr5_4:16551619-16551638 | Msa0840690:intron | 15.0% |
| !!! | TTCTATAATTTGTGATATAT+AGG | + | chr5_4:16552097-16552116 | Msa0840690:intron | 15.0% |
| !!! | ATTTTGTTAACTTACATAAT+TGG | + | chr5_4:16551031-16551050 | Msa0840690:intron | 15.0% |
| !!! | AATTCTTATAGTTGTTTTTT+TGG | + | chr5_4:16551270-16551289 | Msa0840690:intron | 15.0% |
| !!! | TTCTTTTTCAATTCTATTTT+AGG | + | chr5_4:16551619-16551638 | Msa0840690:intron | 15.0% |
| !!! | TTCTATAATTTGTGATATAT+AGG | + | chr5_4:16552097-16552116 | Msa0840690:intron | 15.0% |
| !! | ATTATGATATCTTCTCATTA+TGG | + | chr5_4:16550976-16550995 | Msa0840690:intron | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | - | chr5_4:16551027-16551046 | None:intergenic | 20.0% |
| !! | AAGAATTAAGAAGATTTAAC+TGG | + | chr5_4:16551189-16551208 | Msa0840690:intron | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | - | chr5_4:16551232-16551251 | None:intergenic | 20.0% |
| !! | AAAAAAAGATATAACTTCCA+AGG | - | chr5_4:16551601-16551620 | None:intergenic | 20.0% |
| !! | AAAGAAATGAAACTATATCT+TGG | - | chr5_4:16552028-16552047 | None:intergenic | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | + | chr5_4:16552164-16552183 | Msa0840690:CDS | 20.0% |
| !! | ATTATGATATCTTCTCATTA+TGG | + | chr5_4:16550976-16550995 | Msa0840690:intron | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | - | chr5_4:16551027-16551046 | None:intergenic | 20.0% |
| !! | AAGAATTAAGAAGATTTAAC+TGG | + | chr5_4:16551189-16551208 | Msa0840690:intron | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | - | chr5_4:16551232-16551251 | None:intergenic | 20.0% |
| !! | AAAAAAAGATATAACTTCCA+AGG | - | chr5_4:16551601-16551620 | None:intergenic | 20.0% |
| !! | AAAGAAATGAAACTATATCT+TGG | - | chr5_4:16552028-16552047 | None:intergenic | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | + | chr5_4:16552164-16552183 | Msa0840690:CDS | 20.0% |
| ! | TGAGCAAAATTAAGATTACT+TGG | - | chr5_4:16551081-16551100 | None:intergenic | 25.0% |
| !! | ATTTTGCTCATTCGTATAAT+TGG | + | chr5_4:16551091-16551110 | Msa0840690:intron | 25.0% |
| !!! | CATTTAAATCATTTTGATGG+AGG | - | chr5_4:16551308-16551327 | None:intergenic | 25.0% |
| !! | GCTCATTTAAATCATTTTGA+TGG | - | chr5_4:16551311-16551330 | None:intergenic | 25.0% |
| !! | TATTGTAAATACGTATCGAT+TGG | - | chr5_4:16551822-16551841 | None:intergenic | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | + | chr5_4:16551938-16551957 | Msa0840690:intron | 25.0% |
| !!! | TTGGTGGATAAAGTATTTTT+GGG | - | chr5_4:16552223-16552242 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGTATTTT+TGG | - | chr5_4:16552224-16552243 | None:intergenic | 25.0% |
| ! | TGAGCAAAATTAAGATTACT+TGG | - | chr5_4:16551081-16551100 | None:intergenic | 25.0% |
| !! | ATTTTGCTCATTCGTATAAT+TGG | + | chr5_4:16551091-16551110 | Msa0840690:intron | 25.0% |
| !!! | CATTTAAATCATTTTGATGG+AGG | - | chr5_4:16551308-16551327 | None:intergenic | 25.0% |
| !! | GCTCATTTAAATCATTTTGA+TGG | - | chr5_4:16551311-16551330 | None:intergenic | 25.0% |
| !! | TATTGTAAATACGTATCGAT+TGG | - | chr5_4:16551822-16551841 | None:intergenic | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | + | chr5_4:16551938-16551957 | Msa0840690:intron | 25.0% |
| !!! | TTGGTGGATAAAGTATTTTT+GGG | - | chr5_4:16552223-16552242 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGTATTTT+TGG | - | chr5_4:16552224-16552243 | None:intergenic | 25.0% |
| !! | TTCCAAGAATTGCTTTTCTT+AGG | - | chr5_4:16550574-16550593 | None:intergenic | 30.0% |
| ! | TCAACATGATTCTTAGGTTT+TGG | - | chr5_4:16550685-16550704 | None:intergenic | 30.0% |
| ACATTCTCAACATGATTCTT+AGG | - | chr5_4:16550691-16550710 | None:intergenic | 30.0% | |
| ! | TCTCATTATGGTTCTGTAAT+TGG | + | chr5_4:16550988-16551007 | Msa0840690:intron | 30.0% |
| !! | CTGTAATTGGTTTGAGTAAT+TGG | + | chr5_4:16551001-16551020 | Msa0840690:intron | 30.0% |
| !! | AGGCATAGTTGATTTGATTA+AGG | + | chr5_4:16551129-16551148 | Msa0840690:intron | 30.0% |
| ! | ATTAGAGTTTAGAATTGCGA+CGG | - | chr5_4:16551418-16551437 | None:intergenic | 30.0% |
| GTAAGTATTCAATCTATCCT+TGG | + | chr5_4:16551581-16551600 | Msa0840690:intron | 30.0% | |
| TTGGTATGTATCCAAAACAA+TGG | - | chr5_4:16552009-16552028 | None:intergenic | 30.0% | |
| ! | TGTGATATATAGGTTGTTTC+TGG | + | chr5_4:16552107-16552126 | Msa0840690:intron | 30.0% |
| !! | ATATATAGGTTGTTTCTGGA+GGG | + | chr5_4:16552111-16552130 | Msa0840690:intron | 30.0% |
| ! | TCTCTGTATCTTTCACATTT+TGG | - | chr5_4:16552242-16552261 | None:intergenic | 30.0% |
| ! | TGATGTGTCATTCTTGTTTA+AGG | - | chr5_4:16552298-16552317 | None:intergenic | 30.0% |
| ! | TTCTCAAGTTTGTTCATATC+AGG | - | chr5_4:16552420-16552439 | None:intergenic | 30.0% |
| !! | TTCCAAGAATTGCTTTTCTT+AGG | - | chr5_4:16550574-16550593 | None:intergenic | 30.0% |
| ! | TCAACATGATTCTTAGGTTT+TGG | - | chr5_4:16550685-16550704 | None:intergenic | 30.0% |
| ACATTCTCAACATGATTCTT+AGG | - | chr5_4:16550691-16550710 | None:intergenic | 30.0% | |
| ! | TCTCATTATGGTTCTGTAAT+TGG | + | chr5_4:16550988-16551007 | Msa0840690:intron | 30.0% |
| !! | CTGTAATTGGTTTGAGTAAT+TGG | + | chr5_4:16551001-16551020 | Msa0840690:intron | 30.0% |
| !! | AGGCATAGTTGATTTGATTA+AGG | + | chr5_4:16551129-16551148 | Msa0840690:intron | 30.0% |
| ! | ATTAGAGTTTAGAATTGCGA+CGG | - | chr5_4:16551418-16551437 | None:intergenic | 30.0% |
| GTAAGTATTCAATCTATCCT+TGG | + | chr5_4:16551581-16551600 | Msa0840690:intron | 30.0% | |
| TTGGTATGTATCCAAAACAA+TGG | - | chr5_4:16552009-16552028 | None:intergenic | 30.0% | |
| ! | TGTGATATATAGGTTGTTTC+TGG | + | chr5_4:16552107-16552126 | Msa0840690:intron | 30.0% |
| !! | ATATATAGGTTGTTTCTGGA+GGG | + | chr5_4:16552111-16552130 | Msa0840690:intron | 30.0% |
| ! | TCTCTGTATCTTTCACATTT+TGG | - | chr5_4:16552242-16552261 | None:intergenic | 30.0% |
| ! | TGATGTGTCATTCTTGTTTA+AGG | - | chr5_4:16552298-16552317 | None:intergenic | 30.0% |
| ! | TTCTCAAGTTTGTTCATATC+AGG | - | chr5_4:16552420-16552439 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTTAGGAGACTT+AGG | - | chr5_4:16550565-16550584 | None:intergenic | 35.0% |
| CTCCTAAGAAAAGCAATTCT+TGG | + | chr5_4:16550569-16550588 | Msa0840690:CDS | 35.0% | |
| TTGCTTTGATACCATTGAAG+TGG | + | chr5_4:16550907-16550926 | Msa0840690:intron | 35.0% | |
| ! | TTGGCTAGTTCATCTGATTA+AGG | + | chr5_4:16551050-16551069 | Msa0840690:intron | 35.0% |
| TAGTTCATCTGATTAAGGCT+TGG | + | chr5_4:16551055-16551074 | Msa0840690:intron | 35.0% | |
| ! | ATTGGCTAGTTGATCTGATT+AGG | + | chr5_4:16551109-16551128 | Msa0840690:intron | 35.0% |
| !!! | GCATCGTTTTTTGAGTAAAC+CGG | + | chr5_4:16551151-16551170 | Msa0840690:intron | 35.0% |
| !!! | CATCGTTTTTTGAGTAAACC+GGG | + | chr5_4:16551152-16551171 | Msa0840690:intron | 35.0% |
| ! | GATACTCAACTTTGAAGAAG+TGG | + | chr5_4:16551750-16551769 | Msa0840690:intron | 35.0% |
| ! | TGCAAGTGTTTCCATTGTTT+TGG | + | chr5_4:16551995-16552014 | Msa0840690:intron | 35.0% |
| !! | GATATATAGGTTGTTTCTGG+AGG | + | chr5_4:16552110-16552129 | Msa0840690:intron | 35.0% |
| !! | TATATAGGTTGTTTCTGGAG+GGG | + | chr5_4:16552112-16552131 | Msa0840690:intron | 35.0% |
| !!! | GGATAAAGTATTTTTGGGCA+TGG | - | chr5_4:16552218-16552237 | None:intergenic | 35.0% |
| ! | CTGTATCTTTCACATTTTGG+TGG | - | chr5_4:16552239-16552258 | None:intergenic | 35.0% |
| ATGTGAAAGATACAGAGAAG+AGG | + | chr5_4:16552244-16552263 | Msa0840690:CDS | 35.0% | |
| !! | TTGCTTTTCTTAGGAGACTT+AGG | - | chr5_4:16550565-16550584 | None:intergenic | 35.0% |
| CTCCTAAGAAAAGCAATTCT+TGG | + | chr5_4:16550569-16550588 | Msa0840690:CDS | 35.0% | |
| TTGCTTTGATACCATTGAAG+TGG | + | chr5_4:16550907-16550926 | Msa0840690:intron | 35.0% | |
| ! | TTGGCTAGTTCATCTGATTA+AGG | + | chr5_4:16551050-16551069 | Msa0840690:intron | 35.0% |
| TAGTTCATCTGATTAAGGCT+TGG | + | chr5_4:16551055-16551074 | Msa0840690:intron | 35.0% | |
| ! | ATTGGCTAGTTGATCTGATT+AGG | + | chr5_4:16551109-16551128 | Msa0840690:intron | 35.0% |
| !!! | GCATCGTTTTTTGAGTAAAC+CGG | + | chr5_4:16551151-16551170 | Msa0840690:intron | 35.0% |
| !!! | CATCGTTTTTTGAGTAAACC+GGG | + | chr5_4:16551152-16551171 | Msa0840690:intron | 35.0% |
| ! | GATACTCAACTTTGAAGAAG+TGG | + | chr5_4:16551750-16551769 | Msa0840690:intron | 35.0% |
| ! | TGCAAGTGTTTCCATTGTTT+TGG | + | chr5_4:16551995-16552014 | Msa0840690:intron | 35.0% |
| !! | GATATATAGGTTGTTTCTGG+AGG | + | chr5_4:16552110-16552129 | Msa0840690:intron | 35.0% |
| !! | TATATAGGTTGTTTCTGGAG+GGG | + | chr5_4:16552112-16552131 | Msa0840690:intron | 35.0% |
| !!! | GGATAAAGTATTTTTGGGCA+TGG | - | chr5_4:16552218-16552237 | None:intergenic | 35.0% |
| ! | CTGTATCTTTCACATTTTGG+TGG | - | chr5_4:16552239-16552258 | None:intergenic | 35.0% |
| ATGTGAAAGATACAGAGAAG+AGG | + | chr5_4:16552244-16552263 | Msa0840690:CDS | 35.0% | |
| AGCAATTCTTGGAAGAAACC+TGG | + | chr5_4:16550580-16550599 | Msa0840690:CDS | 40.0% | |
| ! | ACACTTTTCTCATCAACACC+AGG | - | chr5_4:16550601-16550620 | None:intergenic | 40.0% |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | + | chr5_4:16550615-16550634 | Msa0840690:CDS | 40.0% |
| GCAACTAAAAGCCACTTCAA+TGG | - | chr5_4:16550921-16550940 | None:intergenic | 40.0% | |
| !!! | TTTTTTGAGTAAACCGGGTG+AGG | + | chr5_4:16551157-16551176 | Msa0840690:intron | 40.0% |
| GAACAACAACAGGAGAAAAC+TGG | + | chr5_4:16551366-16551385 | Msa0840690:CDS | 40.0% | |
| AACTTAGTTCAAGCTGAGTC+AGG | + | chr5_4:16551444-16551463 | Msa0840690:CDS | 40.0% | |
| ! | TCTTGTTTAAGGTTGTGTCG+TGG | - | chr5_4:16552287-16552306 | None:intergenic | 40.0% |
| GGATTCTCATGTTGTTCCAT+AGG | - | chr5_4:16552330-16552349 | None:intergenic | 40.0% | |
| AGCAATTCTTGGAAGAAACC+TGG | + | chr5_4:16550580-16550599 | Msa0840690:CDS | 40.0% | |
| ! | ACACTTTTCTCATCAACACC+AGG | - | chr5_4:16550601-16550620 | None:intergenic | 40.0% |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | + | chr5_4:16550615-16550634 | Msa0840690:CDS | 40.0% |
| GCAACTAAAAGCCACTTCAA+TGG | - | chr5_4:16550921-16550940 | None:intergenic | 40.0% | |
| !!! | TTTTTTGAGTAAACCGGGTG+AGG | + | chr5_4:16551157-16551176 | Msa0840690:intron | 40.0% |
| GAACAACAACAGGAGAAAAC+TGG | + | chr5_4:16551366-16551385 | Msa0840690:CDS | 40.0% | |
| AACTTAGTTCAAGCTGAGTC+AGG | + | chr5_4:16551444-16551463 | Msa0840690:CDS | 40.0% | |
| ! | TCTTGTTTAAGGTTGTGTCG+TGG | - | chr5_4:16552287-16552306 | None:intergenic | 40.0% |
| GGATTCTCATGTTGTTCCAT+AGG | - | chr5_4:16552330-16552349 | None:intergenic | 40.0% | |
| !! | GATGTTCCTGTGTTGGTTGT+TGG | + | chr5_4:16550622-16550641 | Msa0840690:CDS | 45.0% |
| TTGGTTCCAACAACCAACAC+AGG | - | chr5_4:16550631-16550650 | None:intergenic | 45.0% | |
| TGGTTGTTGGAACCAAGTCT+TGG | + | chr5_4:16550635-16550654 | Msa0840690:CDS | 45.0% | |
| GTTTGAGCATCAGAAAGAGC+TGG | - | chr5_4:16550661-16550680 | None:intergenic | 45.0% | |
| TGTTGAGAATGTTCGTCCTG+TGG | + | chr5_4:16550699-16550718 | Msa0840690:CDS | 45.0% | |
| GAATCCTAAGCCTATATCCC+CGG | + | chr5_4:16550843-16550862 | Msa0840690:CDS | 45.0% | |
| TGTTCCATGCTATGCTCAGA+GGG | - | chr5_4:16551351-16551370 | None:intergenic | 45.0% | |
| TTGTTCCATGCTATGCTCAG+AGG | - | chr5_4:16551352-16551371 | None:intergenic | 45.0% | |
| GCATAGCATGGAACAACAAC+AGG | + | chr5_4:16551356-16551375 | Msa0840690:CDS | 45.0% | |
| ATGACCCGACTCACTGATAT+CGG | - | chr5_4:16551394-16551413 | None:intergenic | 45.0% | |
| TTTGCTTCACGACTTCCTTC+TGG | - | chr5_4:16551516-16551535 | None:intergenic | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+AGG | + | chr5_4:16551520-16551539 | Msa0840690:CDS | 45.0% | |
| ! | TGAAGCAAAGAGAAGGCGTA+GGG | + | chr5_4:16551527-16551546 | Msa0840690:CDS | 45.0% |
| ! | AAAGAGAAGGCGTAGGGAAA+GGG | + | chr5_4:16551533-16551552 | Msa0840690:CDS | 45.0% |
| ! | GAAAGGGTACATTGGACAGA+AGG | + | chr5_4:16551549-16551568 | Msa0840690:CDS | 45.0% |
| CAAGGACGTTGATCTACATG+CGG | - | chr5_4:16551793-16551812 | None:intergenic | 45.0% | |
| !! | CGTATCGATTGGTAGCTACA+AGG | - | chr5_4:16551811-16551830 | None:intergenic | 45.0% |
| AGGGGCTTGAAAAACATGCT+AGG | + | chr5_4:16552130-16552149 | Msa0840690:CDS | 45.0% | |
| GGGGCTTGAAAAACATGCTA+GGG | + | chr5_4:16552131-16552150 | Msa0840690:CDS | 45.0% | |
| GGGCTTGAAAAACATGCTAG+GGG | + | chr5_4:16552132-16552151 | Msa0840690:CDS | 45.0% | |
| AAAAACATGCTAGGGGACGT+TGG | + | chr5_4:16552139-16552158 | Msa0840690:CDS | 45.0% | |
| GCATGGCTAGCAATTTGAGT+TGG | - | chr5_4:16552201-16552220 | None:intergenic | 45.0% | |
| CAACTGCATTTGTCTTGAGG+TGG | - | chr5_4:16552367-16552386 | None:intergenic | 45.0% | |
| CACCTCAAGACAAATGCAGT+TGG | + | chr5_4:16552365-16552384 | Msa0840690:CDS | 45.0% | |
| CACCAACTGCATTTGTCTTG+AGG | - | chr5_4:16552370-16552389 | None:intergenic | 45.0% | |
| ! | TCAGGAAGTGTAGAACCGAT+TGG | - | chr5_4:16552402-16552421 | None:intergenic | 45.0% |
| ! | GCGCAACTTGTTCAACTTGT+TGG | + | chr5_4:16552443-16552462 | Msa0840690:CDS | 45.0% |
| !! | GATGTTCCTGTGTTGGTTGT+TGG | + | chr5_4:16550622-16550641 | Msa0840690:CDS | 45.0% |
| TTGGTTCCAACAACCAACAC+AGG | - | chr5_4:16550631-16550650 | None:intergenic | 45.0% | |
| TGGTTGTTGGAACCAAGTCT+TGG | + | chr5_4:16550635-16550654 | Msa0840690:CDS | 45.0% | |
| GTTTGAGCATCAGAAAGAGC+TGG | - | chr5_4:16550661-16550680 | None:intergenic | 45.0% | |
| TGTTGAGAATGTTCGTCCTG+TGG | + | chr5_4:16550699-16550718 | Msa0840690:CDS | 45.0% | |
| GAATCCTAAGCCTATATCCC+CGG | + | chr5_4:16550843-16550862 | Msa0840690:CDS | 45.0% | |
| TGTTCCATGCTATGCTCAGA+GGG | - | chr5_4:16551351-16551370 | None:intergenic | 45.0% | |
| TTGTTCCATGCTATGCTCAG+AGG | - | chr5_4:16551352-16551371 | None:intergenic | 45.0% | |
| GCATAGCATGGAACAACAAC+AGG | + | chr5_4:16551356-16551375 | Msa0840690:CDS | 45.0% | |
| ATGACCCGACTCACTGATAT+CGG | - | chr5_4:16551394-16551413 | None:intergenic | 45.0% | |
| TTTGCTTCACGACTTCCTTC+TGG | - | chr5_4:16551516-16551535 | None:intergenic | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+AGG | + | chr5_4:16551520-16551539 | Msa0840690:CDS | 45.0% | |
| ! | TGAAGCAAAGAGAAGGCGTA+GGG | + | chr5_4:16551527-16551546 | Msa0840690:CDS | 45.0% |
| ! | AAAGAGAAGGCGTAGGGAAA+GGG | + | chr5_4:16551533-16551552 | Msa0840690:CDS | 45.0% |
| ! | GAAAGGGTACATTGGACAGA+AGG | + | chr5_4:16551549-16551568 | Msa0840690:CDS | 45.0% |
| CAAGGACGTTGATCTACATG+CGG | - | chr5_4:16551793-16551812 | None:intergenic | 45.0% | |
| !! | CGTATCGATTGGTAGCTACA+AGG | - | chr5_4:16551811-16551830 | None:intergenic | 45.0% |
| AGGGGCTTGAAAAACATGCT+AGG | + | chr5_4:16552130-16552149 | Msa0840690:CDS | 45.0% | |
| GGGGCTTGAAAAACATGCTA+GGG | + | chr5_4:16552131-16552150 | Msa0840690:CDS | 45.0% | |
| GGGCTTGAAAAACATGCTAG+GGG | + | chr5_4:16552132-16552151 | Msa0840690:CDS | 45.0% | |
| AAAAACATGCTAGGGGACGT+TGG | + | chr5_4:16552139-16552158 | Msa0840690:CDS | 45.0% | |
| GCATGGCTAGCAATTTGAGT+TGG | - | chr5_4:16552201-16552220 | None:intergenic | 45.0% | |
| CAACTGCATTTGTCTTGAGG+TGG | - | chr5_4:16552367-16552386 | None:intergenic | 45.0% | |
| CACCTCAAGACAAATGCAGT+TGG | + | chr5_4:16552365-16552384 | Msa0840690:CDS | 45.0% | |
| CACCAACTGCATTTGTCTTG+AGG | - | chr5_4:16552370-16552389 | None:intergenic | 45.0% | |
| ! | TCAGGAAGTGTAGAACCGAT+TGG | - | chr5_4:16552402-16552421 | None:intergenic | 45.0% |
| ! | GCGCAACTTGTTCAACTTGT+TGG | + | chr5_4:16552443-16552462 | Msa0840690:CDS | 45.0% |
| AGAAAGAGCTGGCCAAGACT+TGG | - | chr5_4:16550650-16550669 | None:intergenic | 50.0% | |
| TCACCACGCTATCAAAAGCC+AGG | + | chr5_4:16550724-16550743 | Msa0840690:CDS | 50.0% | |
| ACAGGACGAACATTGCGCTT+GGG | - | chr5_4:16550751-16550770 | None:intergenic | 50.0% | |
| ! | GGAACAGCAATGTGAGTTGG+AGG | - | chr5_4:16550778-16550797 | None:intergenic | 50.0% |
| GCAGGAACAGCAATGTGAGT+TGG | - | chr5_4:16550781-16550800 | None:intergenic | 50.0% | |
| TATGCTTTCCCACCTGGTTC+AGG | + | chr5_4:16550802-16550821 | Msa0840690:CDS | 50.0% | |
| GATAAGGTCCTGAACCAGGT+GGG | - | chr5_4:16550813-16550832 | None:intergenic | 50.0% | |
| TTCGGATAAGGTCCTGAACC+AGG | - | chr5_4:16550817-16550836 | None:intergenic | 50.0% | |
| GGTTCAGGACCTTATCCGAA+TGG | + | chr5_4:16550817-16550836 | Msa0840690:CDS | 50.0% | |
| GGATTCGCACCATTCGGATA+AGG | - | chr5_4:16550829-16550848 | None:intergenic | 50.0% | |
| GGCTTAGGATTCGCACCATT+CGG | - | chr5_4:16550835-16550854 | None:intergenic | 50.0% | |
| TGCTATGCTCAGAGGGATCT+TGG | - | chr5_4:16551344-16551363 | None:intergenic | 50.0% | |
| AGATCCCTCTGAGCATAGCA+TGG | + | chr5_4:16551344-16551363 | Msa0840690:CDS | 50.0% | |
| !! | TGGCACCGATATCAGTGAGT+CGG | + | chr5_4:16551386-16551405 | Msa0840690:CDS | 50.0% |
| CAAGCTGAGTCAGTACCAGA+AGG | + | chr5_4:16551498-16551517 | Msa0840690:CDS | 50.0% | |
| ! | GTGAAGCAAAGAGAAGGCGT+AGG | + | chr5_4:16551526-16551545 | Msa0840690:CDS | 50.0% |
| ! | CAAAGAGAAGGCGTAGGGAA+AGG | + | chr5_4:16551532-16551551 | Msa0840690:CDS | 50.0% |
| CACATCAGTCACTGCTCCTA+TGG | + | chr5_4:16552311-16552330 | Msa0840690:CDS | 50.0% | |
| !! | TTGGTGCTGCTCTGTCCAAT+CGG | + | chr5_4:16552384-16552403 | Msa0840690:CDS | 50.0% |
| AGAAAGAGCTGGCCAAGACT+TGG | - | chr5_4:16550650-16550669 | None:intergenic | 50.0% | |
| TCACCACGCTATCAAAAGCC+AGG | + | chr5_4:16550724-16550743 | Msa0840690:CDS | 50.0% | |
| ACAGGACGAACATTGCGCTT+GGG | - | chr5_4:16550751-16550770 | None:intergenic | 50.0% | |
| ! | GGAACAGCAATGTGAGTTGG+AGG | - | chr5_4:16550778-16550797 | None:intergenic | 50.0% |
| GCAGGAACAGCAATGTGAGT+TGG | - | chr5_4:16550781-16550800 | None:intergenic | 50.0% | |
| TATGCTTTCCCACCTGGTTC+AGG | + | chr5_4:16550802-16550821 | Msa0840690:CDS | 50.0% | |
| GATAAGGTCCTGAACCAGGT+GGG | - | chr5_4:16550813-16550832 | None:intergenic | 50.0% | |
| TTCGGATAAGGTCCTGAACC+AGG | - | chr5_4:16550817-16550836 | None:intergenic | 50.0% | |
| GGTTCAGGACCTTATCCGAA+TGG | + | chr5_4:16550817-16550836 | Msa0840690:CDS | 50.0% | |
| GGATTCGCACCATTCGGATA+AGG | - | chr5_4:16550829-16550848 | None:intergenic | 50.0% | |
| GGCTTAGGATTCGCACCATT+CGG | - | chr5_4:16550835-16550854 | None:intergenic | 50.0% | |
| TGCTATGCTCAGAGGGATCT+TGG | - | chr5_4:16551344-16551363 | None:intergenic | 50.0% | |
| AGATCCCTCTGAGCATAGCA+TGG | + | chr5_4:16551344-16551363 | Msa0840690:CDS | 50.0% | |
| !! | TGGCACCGATATCAGTGAGT+CGG | + | chr5_4:16551386-16551405 | Msa0840690:CDS | 50.0% |
| CAAGCTGAGTCAGTACCAGA+AGG | + | chr5_4:16551498-16551517 | Msa0840690:CDS | 50.0% | |
| ! | GTGAAGCAAAGAGAAGGCGT+AGG | + | chr5_4:16551526-16551545 | Msa0840690:CDS | 50.0% |
| ! | CAAAGAGAAGGCGTAGGGAA+AGG | + | chr5_4:16551532-16551551 | Msa0840690:CDS | 50.0% |
| CACATCAGTCACTGCTCCTA+TGG | + | chr5_4:16552311-16552330 | Msa0840690:CDS | 50.0% | |
| !! | TTGGTGCTGCTCTGTCCAAT+CGG | + | chr5_4:16552384-16552403 | Msa0840690:CDS | 50.0% |
| ! | TGATAGCGTGGTGATGCCAC+AGG | - | chr5_4:16550718-16550737 | None:intergenic | 55.0% |
| CAGGACGAACATTGCGCTTG+GGG | - | chr5_4:16550750-16550769 | None:intergenic | 55.0% | |
| CACAGGACGAACATTGCGCT+TGG | - | chr5_4:16550752-16550771 | None:intergenic | 55.0% | |
| CAAGCGCAATGTTCGTCCTG+TGG | + | chr5_4:16550750-16550769 | Msa0840690:CDS | 55.0% | |
| !! | ATGTGAGTTGGAGGTGCCAC+AGG | - | chr5_4:16550769-16550788 | None:intergenic | 55.0% |
| ! | CCAGGTGGGAAAGCATATGC+AGG | - | chr5_4:16550799-16550818 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | + | chr5_4:16550796-16550815 | Msa0840690:CDS | 55.0% | |
| GGATAAGGTCCTGAACCAGG+TGG | - | chr5_4:16550814-16550833 | None:intergenic | 55.0% | |
| TCCTAAGCCTATATCCCCGG+TGG | + | chr5_4:16550846-16550865 | Msa0840690:CDS | 55.0% | |
| TCACCTTGTCCTACTGCCAC+CGG | - | chr5_4:16550865-16550884 | None:intergenic | 55.0% | |
| TTGAGTAAACCGGGTGAGGC+TGG | + | chr5_4:16551161-16551180 | Msa0840690:intron | 55.0% | |
| TGAGTAAACCGGGTGAGGCT+GGG | + | chr5_4:16551162-16551181 | Msa0840690:intron | 55.0% | |
| GAGGGATCTTGGACTGAAGC+TGG | - | chr5_4:16551333-16551352 | None:intergenic | 55.0% | |
| !! | GGCACCGATATCAGTGAGTC+GGG | + | chr5_4:16551387-16551406 | Msa0840690:CDS | 55.0% |
| CAAGCTGAGTCAGGAGCAGA+AGG | + | chr5_4:16551453-16551472 | Msa0840690:CDS | 55.0% | |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5_4:16551541-16551560 | Msa0840690:CDS | 55.0% |
| CTTGAGGTGGCTGTGTCTTG+AGG | - | chr5_4:16552354-16552373 | None:intergenic | 55.0% | |
| ! | TGATAGCGTGGTGATGCCAC+AGG | - | chr5_4:16550718-16550737 | None:intergenic | 55.0% |
| CAGGACGAACATTGCGCTTG+GGG | - | chr5_4:16550750-16550769 | None:intergenic | 55.0% | |
| CACAGGACGAACATTGCGCT+TGG | - | chr5_4:16550752-16550771 | None:intergenic | 55.0% | |
| CAAGCGCAATGTTCGTCCTG+TGG | + | chr5_4:16550750-16550769 | Msa0840690:CDS | 55.0% | |
| !! | ATGTGAGTTGGAGGTGCCAC+AGG | - | chr5_4:16550769-16550788 | None:intergenic | 55.0% |
| ! | CCAGGTGGGAAAGCATATGC+AGG | - | chr5_4:16550799-16550818 | None:intergenic | 55.0% |
| CCTGCATATGCTTTCCCACC+TGG | + | chr5_4:16550796-16550815 | Msa0840690:CDS | 55.0% | |
| GGATAAGGTCCTGAACCAGG+TGG | - | chr5_4:16550814-16550833 | None:intergenic | 55.0% | |
| TCCTAAGCCTATATCCCCGG+TGG | + | chr5_4:16550846-16550865 | Msa0840690:CDS | 55.0% | |
| TCACCTTGTCCTACTGCCAC+CGG | - | chr5_4:16550865-16550884 | None:intergenic | 55.0% | |
| TTGAGTAAACCGGGTGAGGC+TGG | + | chr5_4:16551161-16551180 | Msa0840690:intron | 55.0% | |
| TGAGTAAACCGGGTGAGGCT+GGG | + | chr5_4:16551162-16551181 | Msa0840690:intron | 55.0% | |
| GAGGGATCTTGGACTGAAGC+TGG | - | chr5_4:16551333-16551352 | None:intergenic | 55.0% | |
| !! | GGCACCGATATCAGTGAGTC+GGG | + | chr5_4:16551387-16551406 | Msa0840690:CDS | 55.0% |
| CAAGCTGAGTCAGGAGCAGA+AGG | + | chr5_4:16551453-16551472 | Msa0840690:CDS | 55.0% | |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5_4:16551541-16551560 | Msa0840690:CDS | 55.0% |
| CTTGAGGTGGCTGTGTCTTG+AGG | - | chr5_4:16552354-16552373 | None:intergenic | 55.0% | |
| !!! | GGGCCTGGCTTTTGATAGCG+TGG | - | chr5_4:16550730-16550749 | None:intergenic | 60.0% |
| GCCACCGGGGATATAGGCTT+AGG | - | chr5_4:16550850-16550869 | None:intergenic | 60.0% | |
| CCTACTGCCACCGGGGATAT+AGG | - | chr5_4:16550856-16550875 | None:intergenic | 60.0% | |
| CCTATATCCCCGGTGGCAGT+AGG | + | chr5_4:16550853-16550872 | Msa0840690:CDS | 60.0% | |
| ACCTTGTCCTACTGCCACCG+GGG | - | chr5_4:16550863-16550882 | None:intergenic | 60.0% | |
| CACCTTGTCCTACTGCCACC+GGG | - | chr5_4:16550864-16550883 | None:intergenic | 60.0% | |
| GAGTAAACCGGGTGAGGCTG+GGG | + | chr5_4:16551163-16551182 | Msa0840690:intron | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+CGG | - | chr5_4:16551173-16551192 | None:intergenic | 60.0% | |
| GAGGTGGCTGTGTCTTGAGG+AGG | - | chr5_4:16552351-16552370 | None:intergenic | 60.0% | |
| !!! | GGGCCTGGCTTTTGATAGCG+TGG | - | chr5_4:16550730-16550749 | None:intergenic | 60.0% |
| GCCACCGGGGATATAGGCTT+AGG | - | chr5_4:16550850-16550869 | None:intergenic | 60.0% | |
| CCTACTGCCACCGGGGATAT+AGG | - | chr5_4:16550856-16550875 | None:intergenic | 60.0% | |
| CCTATATCCCCGGTGGCAGT+AGG | + | chr5_4:16550853-16550872 | Msa0840690:CDS | 60.0% | |
| ACCTTGTCCTACTGCCACCG+GGG | - | chr5_4:16550863-16550882 | None:intergenic | 60.0% | |
| CACCTTGTCCTACTGCCACC+GGG | - | chr5_4:16550864-16550883 | None:intergenic | 60.0% | |
| GAGTAAACCGGGTGAGGCTG+GGG | + | chr5_4:16551163-16551182 | Msa0840690:intron | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+CGG | - | chr5_4:16551173-16551192 | None:intergenic | 60.0% | |
| GAGGTGGCTGTGTCTTGAGG+AGG | - | chr5_4:16552351-16552370 | None:intergenic | 60.0% | |
| CGAACATTGCGCTTGGGGCC+TGG | - | chr5_4:16550745-16550764 | None:intergenic | 65.0% | |
| TCCCCGGTGGCAGTAGGACA+AGG | + | chr5_4:16550859-16550878 | Msa0840690:CDS | 65.0% | |
| CGAACATTGCGCTTGGGGCC+TGG | - | chr5_4:16550745-16550764 | None:intergenic | 65.0% | |
| TCCCCGGTGGCAGTAGGACA+AGG | + | chr5_4:16550859-16550878 | Msa0840690:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 16550532 | 16552479 | 16550532 | ID=Msa0840690;Name=Msa0840690 |
| chr5_4 | mRNA | 16550532 | 16552479 | 16550532 | ID=Msa0840690-mRNA-1;Parent=Msa0840690;Name=Msa0840690-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|328 |
| chr5_4 | exon | 16550532 | 16550880 | 16550532 | ID=Msa0840690-mRNA-1:exon:7086;Parent=Msa0840690-mRNA-1 |
| chr5_4 | exon | 16551304 | 16551580 | 16551304 | ID=Msa0840690-mRNA-1:exon:7087;Parent=Msa0840690-mRNA-1 |
| chr5_4 | exon | 16552119 | 16552479 | 16552119 | ID=Msa0840690-mRNA-1:exon:7088;Parent=Msa0840690-mRNA-1 |
| chr5_4 | CDS | 16550532 | 16550880 | 16550532 | ID=Msa0840690-mRNA-1:cds;Parent=Msa0840690-mRNA-1 |
| chr5_4 | CDS | 16551304 | 16551580 | 16551304 | ID=Msa0840690-mRNA-1:cds;Parent=Msa0840690-mRNA-1 |
| chr5_4 | CDS | 16552119 | 16552479 | 16552119 | ID=Msa0840690-mRNA-1:cds;Parent=Msa0840690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
