Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841270 | XP_003612774.2 | 88.308 | 402 | 22 | 1 | 1 | 377 | 1 | 402 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841270 | sp|Q501B2|BZP16_ARATH | 56.585 | 410 | 128 | 9 | 1 | 371 | 1 | 399 | 9.90e-139 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841270 | G7KB04 | 88.308 | 402 | 22 | 1 | 1 | 377 | 1 | 402 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0841270 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841270 | MtrunA17_Chr5g0410531 | 88.308 | 402 | 22 | 1 | 1 | 377 | 1 | 402 | 0.0 | 720 |
| Msa0841270 | MtrunA17_Chr8g0369161 | 70.250 | 400 | 81 | 6 | 1 | 365 | 1 | 397 | 0.0 | 533 |
| Msa0841270 | MtrunA17_Chr7g0275321 | 38.854 | 314 | 158 | 12 | 39 | 350 | 67 | 348 | 6.22e-49 | 170 |
| Msa0841270 | MtrunA17_Chr8g0373571 | 37.278 | 338 | 150 | 12 | 18 | 350 | 47 | 327 | 1.75e-41 | 149 |
| Msa0841270 | MtrunA17_Chr8g0347741 | 32.524 | 412 | 185 | 15 | 1 | 373 | 1 | 358 | 3.49e-35 | 133 |
| Msa0841270 | MtrunA17_Chr1g0162721 | 34.021 | 97 | 62 | 1 | 261 | 355 | 198 | 294 | 2.03e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841270 | AT2G35530.1 | 56.585 | 410 | 128 | 9 | 1 | 371 | 1 | 399 | 1.01e-139 | 404 |
| Msa0841270 | AT1G32150.1 | 56.489 | 393 | 105 | 13 | 1 | 354 | 1 | 366 | 9.53e-125 | 365 |
| Msa0841270 | AT4G36730.1 | 36.810 | 326 | 120 | 11 | 26 | 350 | 49 | 289 | 1.68e-37 | 137 |
| Msa0841270 | AT4G36730.2 | 35.890 | 326 | 121 | 11 | 26 | 350 | 49 | 287 | 1.83e-35 | 132 |
| Msa0841270 | AT2G46270.1 | 34.494 | 316 | 141 | 12 | 43 | 350 | 69 | 326 | 1.68e-31 | 123 |
| Msa0841270 | AT2G46270.3 | 34.494 | 316 | 141 | 12 | 43 | 350 | 69 | 326 | 1.68e-31 | 123 |
| Msa0841270 | AT2G46270.2 | 28.571 | 350 | 176 | 13 | 19 | 350 | 10 | 303 | 9.93e-19 | 87.0 |
| Msa0841270 | AT2G46270.4 | 28.571 | 350 | 176 | 13 | 19 | 350 | 10 | 303 | 9.93e-19 | 87.0 |
| Msa0841270 | AT4G01120.1 | 42.500 | 120 | 59 | 2 | 242 | 353 | 202 | 319 | 1.63e-17 | 83.6 |
| Msa0841270 | AT5G38800.1 | 40.698 | 86 | 47 | 1 | 285 | 370 | 72 | 153 | 8.27e-11 | 60.8 |
Find 164 sgRNAs with CRISPR-Local
Find 479 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCGACTGGGCCAGCTTTC+AGG | 0.136219 | 5_4:-17397621 | Msa0841270:intron |
| GGTGCTCCTGGAGCTGTTTC+TGG | 0.143125 | 5_4:-17394439 | Msa0841270:CDS |
| ATTACCACTCAAAGAGAAAT+TGG | 0.187816 | 5_4:+17398397 | None:intergenic |
| TAAATATAGGAATGGATTAT+TGG | 0.223124 | 5_4:-17394402 | Msa0841270:CDS |
| AGGATCATATACTGCATTTC+GGG | 0.276345 | 5_4:-17392381 | Msa0841270:three_prime_UTR |
| TCAGCGCATACTTCACAAAA+TGG | 0.279474 | 5_4:-17394526 | Msa0841270:CDS |
| AAAGACGAAAGCAGTCTAAT+AGG | 0.280364 | 5_4:-17393232 | Msa0841270:CDS |
| TTCACCCATATATAAAAGTA+TGG | 0.284265 | 5_4:-17397833 | Msa0841270:exon |
| AAACTTTCAAGCTGAGAAAA+AGG | 0.295666 | 5_4:+17392165 | None:intergenic |
| GTTGCAGGAGGGGTGGTTAC+TGG | 0.298356 | 5_4:-17394322 | Msa0841270:CDS |
| TAGGATCATATACTGCATTT+CGG | 0.320801 | 5_4:-17392382 | Msa0841270:three_prime_UTR |
| TTTCTGTATGAATAATTTAT+CGG | 0.321482 | 5_4:-17392087 | Msa0841270:three_prime_UTR |
| GGTGAATTGGGGATTTGAAT+TGG | 0.336044 | 5_4:+17398514 | None:intergenic |
| CGCGCTCTTGCTATTGAGTT+AGG | 0.337803 | 5_4:+17392351 | None:intergenic |
| CAGCACATGATGCCTCCTTA+TGG | 0.341092 | 5_4:-17396017 | Msa0841270:CDS |
| ACAGTAGGAGGGGTTAAAAT+TGG | 0.346933 | 5_4:+17398460 | None:intergenic |
| GGTAGTTTGAACATGATTAC+AGG | 0.349225 | 5_4:-17395566 | Msa0841270:CDS |
| CCTATATTTAAGTTTGTTGC+GGG | 0.356569 | 5_4:+17394415 | None:intergenic |
| GTTAAAATTGGCAAGAAAAG+TGG | 0.361330 | 5_4:+17398472 | None:intergenic |
| AGCTAAGGAAGAAGGTGAAT+TGG | 0.361634 | 5_4:+17398501 | None:intergenic |
| TACCTTGAGAGCTGCATTCT+CGG | 0.363000 | 5_4:+17392975 | None:intergenic |
| GGTTAAAAGTAAGACAAATT+AGG | 0.372590 | 5_4:+17392235 | None:intergenic |
| GCTAAGGAAGAAGGTGAATT+GGG | 0.372762 | 5_4:+17398502 | None:intergenic |
| ATAGGGCTCTCAATTGAAAT+CGG | 0.375431 | 5_4:-17394721 | Msa0841270:intron |
| GTGAATTGGGGATTTGAATT+GGG | 0.380776 | 5_4:+17398515 | None:intergenic |
| AAAAGGTCAAAAGGAAGTTT+AGG | 0.381702 | 5_4:-17395587 | Msa0841270:CDS |
| GGTTGTGCAGGGTGGTCATT+AGG | 0.383561 | 5_4:-17392401 | Msa0841270:exon |
| GGAGCACCACTTGCCGAGAT+AGG | 0.387899 | 5_4:+17394454 | None:intergenic |
| ACAGGTGAACCATCTCAAAA+TGG | 0.390659 | 5_4:-17394553 | Msa0841270:intron |
| GTGCCATCTACCACAGTTGC+AGG | 0.398839 | 5_4:-17394337 | Msa0841270:CDS |
| TAATGCGATTTACTTCTAAT+CGG | 0.403981 | 5_4:+17393022 | None:intergenic |
| ATCTCGGCAAGTGGTGCTCC+TGG | 0.408534 | 5_4:-17394451 | Msa0841270:CDS |
| CTGGCCCAGTCGGTATTAAC+TGG | 0.409326 | 5_4:+17397629 | None:intergenic |
| GTAGGCATGGCATAAGGATA+TGG | 0.411726 | 5_4:+17395826 | None:intergenic |
| TTACCACTCAAAGAGAAATT+GGG | 0.415228 | 5_4:+17398398 | None:intergenic |
| AAGACGAAAGCAGTCTAATA+GGG | 0.416680 | 5_4:-17393231 | Msa0841270:CDS |
| CCTCCTGCAACTGTGGTAGA+TGG | 0.421002 | 5_4:+17394334 | None:intergenic |
| GGATCCTTCAGAGCTTGATC+TGG | 0.429740 | 5_4:+17398420 | None:intergenic |
| CATCACCTGCTTGCGCAACC+TGG | 0.437317 | 5_4:+17393193 | None:intergenic |
| GGCACCTTTCCGCGGAGAGC+GGG | 0.441783 | 5_4:+17394355 | None:intergenic |
| CTCAATTGAAATCGGGAGAC+AGG | 0.442118 | 5_4:-17394713 | Msa0841270:CDS |
| CCCGCAACAAACTTAAATAT+AGG | 0.444449 | 5_4:-17394415 | Msa0841270:CDS |
| GAGGCCTCAGCAATACCGTT+TGG | 0.453005 | 5_4:+17395802 | None:intergenic |
| AACAATATAATTAATGTAGC+TGG | 0.453033 | 5_4:-17392127 | Msa0841270:three_prime_UTR |
| CAGCGCATACTTCACAAAAT+GGG | 0.455379 | 5_4:-17394525 | Msa0841270:CDS |
| TAAGATTGAATTGATGAGAA+GGG | 0.458443 | 5_4:+17398570 | None:intergenic |
| TCCTATATTTAAGTTTGTTG+CGG | 0.459038 | 5_4:+17394414 | None:intergenic |
| TTACCAATCAAAAGGTCAAA+AGG | 0.467960 | 5_4:-17395596 | Msa0841270:CDS |
| TTAATCTACAGGAGAGACTT+GGG | 0.468089 | 5_4:-17392483 | Msa0841270:intron |
| CCATCAGTTTCCATGCTGGC+AGG | 0.471564 | 5_4:+17395644 | None:intergenic |
| ACAGCGGGGACATCTGCTAA+TGG | 0.473912 | 5_4:-17395521 | Msa0841270:CDS |
| GGGAATCTGCTAGGAGATCC+AGG | 0.478638 | 5_4:-17393211 | Msa0841270:CDS |
| TTTAATCTACAGGAGAGACT+TGG | 0.481648 | 5_4:-17392484 | Msa0841270:intron |
| ATGGGGATACATTGCAACAT+AGG | 0.481817 | 5_4:+17395980 | None:intergenic |
| ATTGAAATCGGGAGACAGGC+TGG | 0.486147 | 5_4:-17394709 | Msa0841270:CDS |
| TATGTCTGTCATTCCTATCT+CGG | 0.487110 | 5_4:-17394467 | Msa0841270:CDS |
| TCAGTCACAACTTTGGCTAC+AGG | 0.487817 | 5_4:-17394281 | Msa0841270:intron |
| GTTTGATTAACCACTGTATG+AGG | 0.491464 | 5_4:+17394490 | None:intergenic |
| AGCAGTGAATATACAGTAGG+AGG | 0.491527 | 5_4:+17398448 | None:intergenic |
| CACATGTGTTGATCGTTCCC+TGG | 0.491959 | 5_4:+17392454 | None:intergenic |
| TGGACAGACAGAGGTTGTGC+AGG | 0.495031 | 5_4:-17392413 | Msa0841270:CDS |
| GGGTGGTTACTGGTGGATCA+CGG | 0.495283 | 5_4:-17394312 | Msa0841270:CDS |
| AGTAAGACAAATTAGGAATG+AGG | 0.496924 | 5_4:+17392242 | None:intergenic |
| TAGGGCTCTCAATTGAAATC+GGG | 0.497622 | 5_4:-17394720 | Msa0841270:CDS |
| GCGGGGCCAGAAACAGCTCC+AGG | 0.501668 | 5_4:+17394433 | None:intergenic |
| GGTGGTTACTGGTGGATCAC+GGG | 0.504171 | 5_4:-17394311 | Msa0841270:CDS |
| ATCTACCACAGTTGCAGGAG+GGG | 0.510686 | 5_4:-17394332 | Msa0841270:CDS |
| AATGAACATGGTAAAACAGC+GGG | 0.512685 | 5_4:-17395536 | Msa0841270:CDS |
| CTCTCCAGATCAAGCTCTGA+AGG | 0.513719 | 5_4:-17398424 | Msa0841270:five_prime_UTR |
| TTAAAATTGGCAAGAAAAGT+GGG | 0.514282 | 5_4:+17398473 | None:intergenic |
| CCAGTCGGTATTAACTGGTC+CGG | 0.519827 | 5_4:+17397634 | None:intergenic |
| TGCTCATCCATCCATGCCTC+CGG | 0.520704 | 5_4:-17395946 | Msa0841270:intron |
| GAGAGACTTGGGGAACAACC+AGG | 0.524711 | 5_4:-17392472 | Msa0841270:CDS |
| GGTGAAAGTGGAAGTTATGA+AGG | 0.527913 | 5_4:-17394926 | Msa0841270:CDS |
| ATGATTACCGGAGGCATGGA+TGG | 0.528642 | 5_4:+17395939 | None:intergenic |
| CCTTCGACCACCACAAGCAC+CGG | 0.529424 | 5_4:-17397653 | Msa0841270:CDS |
| GCGGGAATGTTGGATGAAGT+TGG | 0.529481 | 5_4:+17394373 | None:intergenic |
| GCGATTTACTTCTAATCGGA+GGG | 0.529909 | 5_4:+17393026 | None:intergenic |
| GAGATCCAGGTTGCGCAAGC+AGG | 0.529997 | 5_4:-17393198 | Msa0841270:intron |
| GGAACTCGTGGGTCGTCGTA+CGG | 0.531318 | 5_4:+17398660 | None:intergenic |
| GGGAATTGAGCTAAGGAAGA+AGG | 0.532811 | 5_4:+17398493 | None:intergenic |
| TGGGGATACATTGCAACATA+GGG | 0.533477 | 5_4:+17395981 | None:intergenic |
| AGTAGCAGTGAATATACAGT+AGG | 0.533650 | 5_4:+17398445 | None:intergenic |
| AGTTATGAAGGTACTAGTGA+AGG | 0.533947 | 5_4:-17394914 | Msa0841270:CDS |
| ATAGTGTTCAGTCACAACTT+TGG | 0.537639 | 5_4:-17394288 | Msa0841270:CDS |
| GCAGGAGGGGTGGTTACTGG+TGG | 0.539069 | 5_4:-17394319 | Msa0841270:CDS |
| TTTGGAGTAGGCATGGCATA+AGG | 0.540351 | 5_4:+17395820 | None:intergenic |
| GTAAGACAAATTAGGAATGA+GGG | 0.540443 | 5_4:+17392243 | None:intergenic |
| TGCGATTTACTTCTAATCGG+AGG | 0.542152 | 5_4:+17393025 | None:intergenic |
| CCGGTGCTTGTGGTGGTCGA+AGG | 0.542859 | 5_4:+17397653 | None:intergenic |
| ATAAGATTGAATTGATGAGA+AGG | 0.545361 | 5_4:+17398569 | None:intergenic |
| GGATGTGGTGGAGTACCATA+AGG | 0.547567 | 5_4:+17396002 | None:intergenic |
| TTTACCATCAGTTTCCATGC+TGG | 0.549293 | 5_4:+17395640 | None:intergenic |
| ATCCCCAATTTCTCTTTGAG+TGG | 0.549840 | 5_4:-17398401 | Msa0841270:intron |
| AACAATGATTACCGGAGGCA+TGG | 0.549906 | 5_4:+17395935 | None:intergenic |
| GGGAAACACTCCTGCCAGCA+TGG | 0.550438 | 5_4:-17395654 | Msa0841270:CDS |
| TATGCCATGCCTACTCCAAA+CGG | 0.550779 | 5_4:-17395817 | Msa0841270:CDS |
| AACCTGAAAGCTGGCCCAGT+CGG | 0.552093 | 5_4:+17397619 | None:intergenic |
| TCACCCATATATAAAAGTAT+GGG | 0.552356 | 5_4:-17397832 | Msa0841270:exon |
| ACTCGTGGGTCGTCGTACGG+TGG | 0.552979 | 5_4:+17398663 | None:intergenic |
| CCGGACCAGTTAATACCGAC+TGG | 0.553810 | 5_4:-17397634 | Msa0841270:CDS |
| TTCCGAGAATGCAGCTCTCA+AGG | 0.555646 | 5_4:-17392977 | Msa0841270:intron |
| TGGATTTGCAGTGGTGAAAG+TGG | 0.559926 | 5_4:-17394938 | Msa0841270:intron |
| GCAGTGAATATACAGTAGGA+GGG | 0.561436 | 5_4:+17398449 | None:intergenic |
| TCCGCGGAGAGCGGGAATGT+TGG | 0.562352 | 5_4:+17394363 | None:intergenic |
| AACCACCCCTCCTGCAACTG+TGG | 0.562926 | 5_4:+17394327 | None:intergenic |
| CATTCCCGCTCTCCGCGGAA+AGG | 0.563820 | 5_4:-17394359 | Msa0841270:CDS |
| AAGATTGAATTGATGAGAAG+GGG | 0.569776 | 5_4:+17398571 | None:intergenic |
| GTCAATTAGACCTGTGATGT+TGG | 0.571910 | 5_4:+17397757 | None:intergenic |
| CTCGTGGGTCGTCGTACGGT+GGG | 0.572804 | 5_4:+17398664 | None:intergenic |
| AAGTATGGGCAATAATGAGA+TGG | 0.572969 | 5_4:-17397818 | Msa0841270:exon |
| TGGTAAACCTCCTGAAGTGA+AGG | 0.575107 | 5_4:-17395624 | Msa0841270:CDS |
| AATAGGAACGAAAATCTGAC+TGG | 0.578443 | 5_4:-17398694 | Msa0841270:five_prime_UTR |
| TACATTGCAACATAGGGATG+TGG | 0.580807 | 5_4:+17395987 | None:intergenic |
| CTAATGGAATTCACTCAAAG+AGG | 0.581180 | 5_4:-17395505 | Msa0841270:intron |
| GACACCGCCACCAACATCAC+AGG | 0.583308 | 5_4:-17397767 | Msa0841270:intron |
| AACAAACTTAAATATAGGAA+TGG | 0.588482 | 5_4:-17394410 | Msa0841270:CDS |
| ATTAACTGGTCCGGTGCTTG+TGG | 0.588743 | 5_4:+17397643 | None:intergenic |
| AGCGCATACTTCACAAAATG+GGG | 0.595594 | 5_4:-17394524 | Msa0841270:CDS |
| AACTGGTCCGGTGCTTGTGG+TGG | 0.595789 | 5_4:+17397646 | None:intergenic |
| TGGCACCTTTCCGCGGAGAG+CGG | 0.596634 | 5_4:+17394354 | None:intergenic |
| TACCACTCAAAGAGAAATTG+GGG | 0.600205 | 5_4:+17398399 | None:intergenic |
| TAACCCCATTCAAAACAACA+TGG | 0.603445 | 5_4:-17392217 | Msa0841270:three_prime_UTR |
| TCAGCAATACCGTTTGGAGT+AGG | 0.605905 | 5_4:+17395808 | None:intergenic |
| ATTGACAAGAAATATAACTC+AGG | 0.606608 | 5_4:+17392041 | None:intergenic |
| TACCACAGTTGCAGGAGGGG+TGG | 0.607669 | 5_4:-17394329 | Msa0841270:CDS |
| GATGAGCATATATGCCACCA+TGG | 0.610974 | 5_4:+17395961 | None:intergenic |
| GTCATTCCTATCTCGGCAAG+TGG | 0.611010 | 5_4:-17394460 | Msa0841270:CDS |
| GAAAAGTGGGAATTGAGCTA+AGG | 0.613250 | 5_4:+17398486 | None:intergenic |
| ATTGCAACATAGGGATGTGG+TGG | 0.613657 | 5_4:+17395990 | None:intergenic |
| CGGACCAGTTAATACCGACT+GGG | 0.619650 | 5_4:-17397633 | Msa0841270:CDS |
| GGATAAAACAGCAAAAGAGA+AGG | 0.619999 | 5_4:-17397797 | Msa0841270:CDS |
| CCATCTACCACAGTTGCAGG+AGG | 0.621558 | 5_4:-17394334 | Msa0841270:CDS |
| CATCTACCACAGTTGCAGGA+GGG | 0.622666 | 5_4:-17394333 | Msa0841270:CDS |
| CTAAGGAAGAAGGTGAATTG+GGG | 0.624481 | 5_4:+17398503 | None:intergenic |
| AGATTGAATTGATGAGAAGG+GGG | 0.624498 | 5_4:+17398572 | None:intergenic |
| GTAGTTTGAACATGATTACA+GGG | 0.624590 | 5_4:-17395565 | Msa0841270:CDS |
| CCTGCCAGCATGGAAACTGA+TGG | 0.625964 | 5_4:-17395644 | Msa0841270:CDS |
| ATGAGCATATATGCCACCAT+GGG | 0.627162 | 5_4:+17395962 | None:intergenic |
| TGGTAGATGGCACCTTTCCG+CGG | 0.630129 | 5_4:+17394347 | None:intergenic |
| AGTCTAATAGGGAATCTGCT+AGG | 0.631918 | 5_4:-17393220 | Msa0841270:CDS |
| TAGACCTGTGATGTTGGTGG+CGG | 0.632032 | 5_4:+17397763 | None:intergenic |
| TACTCCAAACGGTATTGCTG+AGG | 0.632684 | 5_4:-17395806 | Msa0841270:CDS |
| AATACCGTTTGGAGTAGGCA+TGG | 0.637188 | 5_4:+17395813 | None:intergenic |
| TGTTCGTGGAGAGGAACTCG+TGG | 0.641287 | 5_4:+17398648 | None:intergenic |
| TGTAACGACAGTCAACAAAG+TGG | 0.642893 | 5_4:-17392433 | Msa0841270:CDS |
| GTTCGTGGAGAGGAACTCGT+GGG | 0.643500 | 5_4:+17398649 | None:intergenic |
| GGACAGACAGAGGTTGTGCA+GGG | 0.645924 | 5_4:-17392412 | Msa0841270:CDS |
| ACTTAATGCACCTCATACAG+TGG | 0.648863 | 5_4:-17394500 | Msa0841270:CDS |
| TAATCTACAGGAGAGACTTG+GGG | 0.650587 | 5_4:-17392482 | Msa0841270:intron |
| AATTAGACCTGTGATGTTGG+TGG | 0.654977 | 5_4:+17397760 | None:intergenic |
| TATGTTGCAATGTATCCCCA+TGG | 0.658872 | 5_4:-17395978 | Msa0841270:CDS |
| TCAACAAAGTGGACAGACAG+AGG | 0.662687 | 5_4:-17392422 | Msa0841270:CDS |
| CAGTGAATATACAGTAGGAG+GGG | 0.663090 | 5_4:+17398450 | None:intergenic |
| AGAGACTTGGGGAACAACCA+GGG | 0.664305 | 5_4:-17392471 | Msa0841270:CDS |
| CTATATTTAAGTTTGTTGCG+GGG | 0.664908 | 5_4:+17394416 | None:intergenic |
| TCCAACATTCCCGCTCTCCG+CGG | 0.674208 | 5_4:-17394364 | Msa0841270:CDS |
| TGTGGTGGAGTACCATAAGG+AGG | 0.685282 | 5_4:+17396005 | None:intergenic |
| TAATGAACATGGTAAAACAG+CGG | 0.688598 | 5_4:-17395537 | Msa0841270:CDS |
| CAGACAGAGGTTGTGCAGGG+TGG | 0.709413 | 5_4:-17392409 | Msa0841270:CDS |
| GCGCATACTTCACAAAATGG+GGG | 0.717939 | 5_4:-17394523 | Msa0841270:CDS |
| TGAGCATATATGCCACCATG+GGG | 0.728314 | 5_4:+17395963 | None:intergenic |
| GTTGCAATGTATCCCCATGG+TGG | 0.737517 | 5_4:-17395975 | Msa0841270:CDS |
| ATGAACATGGTAAAACAGCG+GGG | 0.756524 | 5_4:-17395535 | Msa0841270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAATATTAAATATAT+TGG | - | chr5_4:17397979-17397998 | Msa0841270:intron | 0.0% |
| !!! | TCTAAATTATTTTTAACATT+AGG | + | chr5_4:17393452-17393471 | None:intergenic | 10.0% |
| !! | AAAATATCATAAATATAAAG+CGG | - | chr5_4:17394083-17394102 | Msa0841270:intron | 10.0% |
| !!! | TAAAATCAAAATTGGATTTT+TGG | - | chr5_4:17392582-17392601 | Msa0841270:intron | 15.0% |
| !!! | ACACTATTTTCTATTATTTT+TGG | - | chr5_4:17393161-17393180 | Msa0841270:intron | 15.0% |
| !! | TTATCATTGTTGAAATTATA+AGG | - | chr5_4:17393500-17393519 | Msa0841270:intron | 15.0% |
| !!! | AAATTATAAGGTTTTAGATA+GGG | - | chr5_4:17393512-17393531 | Msa0841270:intron | 15.0% |
| !! | TACTAATCCTAAATAAATAA+AGG | - | chr5_4:17393635-17393654 | Msa0841270:intron | 15.0% |
| !!! | TTTGTTTCCTTTATTTATTT+AGG | + | chr5_4:17393645-17393664 | None:intergenic | 15.0% |
| !! | AAATTAAAAGAATTAGAAGA+AGG | - | chr5_4:17393856-17393875 | Msa0841270:intron | 15.0% |
| !!! | TTGTAAATTGACTTATAATT+TGG | - | chr5_4:17393934-17393953 | Msa0841270:intron | 15.0% |
| !!! | AAAATGAATAATTCAGATTT+TGG | - | chr5_4:17394534-17394553 | Msa0841270:CDS | 15.0% |
| !! | TGTATTAATAATGATTACAT+TGG | - | chr5_4:17395452-17395471 | Msa0841270:intron | 15.0% |
| !! | AATCAGATAAAAATGTTAAA+AGG | + | chr5_4:17395537-17395556 | None:intergenic | 15.0% |
| !!! | TTTTGTATTTGTGTTTTTAT+AGG | - | chr5_4:17395994-17396013 | Msa0841270:CDS | 15.0% |
| !!! | TTTGTATTTGTGTTTTTATA+GGG | - | chr5_4:17395995-17396014 | Msa0841270:CDS | 15.0% |
| !! | CTGTAAAAGATTATTAATAA+TGG | + | chr5_4:17397420-17397439 | None:intergenic | 15.0% |
| !!! | ATATTTTCTGATTAACTTTT+AGG | - | chr5_4:17397457-17397476 | Msa0841270:intron | 15.0% |
| !!! | ACTATATTTGACTTATTTAT+TGG | - | chr5_4:17397930-17397949 | Msa0841270:intron | 15.0% |
| !! | TTTCTGTATGAATAATTTAT+CGG | - | chr5_4:17398646-17398665 | Msa0841270:five_prime_UTR | 15.0% |
| !! | ACATAGAGTAAAATCAAAAT+TGG | - | chr5_4:17392574-17392593 | Msa0841270:intron | 20.0% |
| !!! | TTTTTGATTTTGAATGAGTA+TGG | - | chr5_4:17392807-17392826 | Msa0841270:intron | 20.0% |
| !!! | TTTAACGAAGAAGTTTTTTT+CGG | - | chr5_4:17393137-17393156 | Msa0841270:intron | 20.0% |
| !! | CATTAATGAGCAATAATATA+AGG | + | chr5_4:17393369-17393388 | None:intergenic | 20.0% |
| !! | CTTATATTATTGCTCATTAA+TGG | - | chr5_4:17393367-17393386 | Msa0841270:intron | 20.0% |
| !! | TAGCTAGATATTAGAATATT+TGG | + | chr5_4:17393393-17393412 | None:intergenic | 20.0% |
| !!! | TTATTTTTAACATTAGGCAT+TGG | + | chr5_4:17393446-17393465 | None:intergenic | 20.0% |
| !! | ACAATGATAATAGTTTGAAA+AGG | + | chr5_4:17393490-17393509 | None:intergenic | 20.0% |
| !!! | GAAATTATAAGGTTTTAGAT+AGG | - | chr5_4:17393511-17393530 | Msa0841270:intron | 20.0% |
| !! | AATCTGTTATTATGCTAATT+AGG | - | chr5_4:17393583-17393602 | Msa0841270:intron | 20.0% |
| !! | TAAATAAAGGAAACAAATCA+TGG | - | chr5_4:17393648-17393667 | Msa0841270:intron | 20.0% |
| !!! | GAAACATAGTTAATTTTGTA+TGG | - | chr5_4:17393773-17393792 | Msa0841270:intron | 20.0% |
| !!! | AAGGAGTATTAAATAGTAAA+GGG | - | chr5_4:17393875-17393894 | Msa0841270:intron | 20.0% |
| !!! | AGTTATTTCCATTCATTATT+GGG | + | chr5_4:17394503-17394522 | None:intergenic | 20.0% |
| !! | TTAATGAACCAAATAAAACA+CGG | + | chr5_4:17394681-17394700 | None:intergenic | 20.0% |
| !! | TCATAATTAACAATGATTAC+CGG | + | chr5_4:17394809-17394828 | None:intergenic | 20.0% |
| !! | CATTGTTAATTATGATTTCA+TGG | - | chr5_4:17394814-17394833 | Msa0841270:intron | 20.0% |
| !!! | TGCAATTTTTTAATACATCA+TGG | - | chr5_4:17395560-17395579 | Msa0841270:CDS | 20.0% |
| !!! | GCAATTTTTTAATACATCAT+GGG | - | chr5_4:17395561-17395580 | Msa0841270:CDS | 20.0% |
| !!! | TTTGTTTTTTCAACTATCAT+AGG | - | chr5_4:17395971-17395990 | Msa0841270:CDS | 20.0% |
| !! | AACAAACTTAAATATAGGAA+TGG | - | chr5_4:17396323-17396342 | Msa0841270:intron | 20.0% |
| !!! | TAAATATAGGAATGGATTAT+TGG | - | chr5_4:17396331-17396350 | Msa0841270:intron | 20.0% |
| !!! | GCTTAATCTAATTGTATTTT+AGG | - | chr5_4:17396908-17396927 | Msa0841270:intron | 20.0% |
| !!! | ACTAAAATACAACTTTTATG+AGG | + | chr5_4:17396945-17396964 | None:intergenic | 20.0% |
| !!! | AAAGTTGTATTTTAGTGAAT+AGG | - | chr5_4:17396949-17396968 | Msa0841270:intron | 20.0% |
| !!! | TGTATGCTTTTTTTGTTAAA+AGG | - | chr5_4:17397793-17397812 | Msa0841270:CDS | 20.0% |
| !! | AGGAATGAAAAGTTTAAAAA+AGG | - | chr5_4:17397813-17397832 | Msa0841270:CDS | 20.0% |
| !! | GGAATGAAAAGTTTAAAAAA+GGG | - | chr5_4:17397814-17397833 | Msa0841270:CDS | 20.0% |
| !! | TTATAAGAAATGATAAATCC+TGG | + | chr5_4:17398068-17398087 | None:intergenic | 20.0% |
| !!! | AGATCTTTTAAGACTATAAT+AGG | + | chr5_4:17398452-17398471 | None:intergenic | 20.0% |
| !! | AACAATATAATTAATGTAGC+TGG | - | chr5_4:17398606-17398625 | Msa0841270:five_prime_UTR | 20.0% |
| !! | ATCAAAAATTAGGGTTTGTT+GGG | + | chr5_4:17392124-17392143 | None:intergenic | 25.0% |
| ! | TAAGATTGAATTGATGAGAA+GGG | + | chr5_4:17392166-17392185 | None:intergenic | 25.0% |
| ! | ATAAGATTGAATTGATGAGA+AGG | + | chr5_4:17392167-17392186 | None:intergenic | 25.0% |
| ! | TTAAAATTGGCAAGAAAAGT+GGG | + | chr5_4:17392263-17392282 | None:intergenic | 25.0% |
| !!! | ATGATTGAATTTGCTATGTT+GGG | - | chr5_4:17392540-17392559 | Msa0841270:intron | 25.0% |
| ! | ATGTTAGACTAAATAGTTCA+AGG | + | chr5_4:17392753-17392772 | None:intergenic | 25.0% |
| ! | TTCACCCATATATAAAAGTA+TGG | - | chr5_4:17392900-17392919 | Msa0841270:intron | 25.0% |
| !! | TCACCCATATATAAAAGTAT+GGG | - | chr5_4:17392901-17392920 | Msa0841270:intron | 25.0% |
| !! | TTGCCCATACTTTTATATAT+GGG | + | chr5_4:17392907-17392926 | None:intergenic | 25.0% |
| !! | ATTGCCCATACTTTTATATA+TGG | + | chr5_4:17392908-17392927 | None:intergenic | 25.0% |
| !! | GAAACATTTATCCTTTTTCT+AGG | - | chr5_4:17393052-17393071 | Msa0841270:CDS | 25.0% |
| ! | AAAATATATGCATCATTACC+TGG | + | chr5_4:17393299-17393318 | None:intergenic | 25.0% |
| !!! | TATATTTTAAATGCCCGATT+TGG | - | chr5_4:17393311-17393330 | Msa0841270:intron | 25.0% |
| !!! | GTTTCTTAATTTGTGTGAAA+TGG | + | chr5_4:17393758-17393777 | None:intergenic | 25.0% |
| ! | ATTATCCTTCATTAATTACG+TGG | - | chr5_4:17393826-17393845 | Msa0841270:intron | 25.0% |
| ! | TTATCCTTCATTAATTACGT+GGG | - | chr5_4:17393827-17393846 | Msa0841270:intron | 25.0% |
| !!! | GAAGGAGTATTAAATAGTAA+AGG | - | chr5_4:17393874-17393893 | Msa0841270:intron | 25.0% |
| !! | AATTGACTTATAATTTGGAG+TGG | - | chr5_4:17393939-17393958 | Msa0841270:intron | 25.0% |
| ! | ACATATCAACTAAAATTTCC+CGG | - | chr5_4:17394310-17394329 | Msa0841270:CDS | 25.0% |
| ! | TTAAAACTCCCAATAATGAA+TGG | - | chr5_4:17394492-17394511 | Msa0841270:CDS | 25.0% |
| !! | GAGTTATTTCCATTCATTAT+TGG | + | chr5_4:17394504-17394523 | None:intergenic | 25.0% |
| !! | CTGAATTATTCATTTTGTAG+TGG | + | chr5_4:17394530-17394549 | None:intergenic | 25.0% |
| ! | TGAAGACTAATAAATAGTTG+AGG | + | chr5_4:17394561-17394580 | None:intergenic | 25.0% |
| ! | TAATGAACCAAATAAAACAC+GGG | + | chr5_4:17394680-17394699 | None:intergenic | 25.0% |
| !!! | ACTTTTTCCCTACTTATATA+AGG | + | chr5_4:17395041-17395060 | None:intergenic | 25.0% |
| ! | AGGAAAAATTACCAATCAAA+AGG | - | chr5_4:17395129-17395148 | Msa0841270:intron | 25.0% |
| ! | TACTGTTTGATGAAAAAGAA+TGG | + | chr5_4:17395297-17395316 | None:intergenic | 25.0% |
| !!! | ACACCAGAAAAAGTTTTAAT+AGG | + | chr5_4:17395366-17395385 | None:intergenic | 25.0% |
| !!! | TATCAATGTTTTTGCTCTAT+TGG | - | chr5_4:17395691-17395710 | Msa0841270:intron | 25.0% |
| !! | TACCTTTTCTATTGAATTAC+AGG | - | chr5_4:17396162-17396181 | Msa0841270:intron | 25.0% |
| !!! | TCCTATATTTAAGTTTGTTG+CGG | + | chr5_4:17396322-17396341 | None:intergenic | 25.0% |
| ! | ATCGAAAGAATAAACATCAT+TGG | + | chr5_4:17396494-17396513 | None:intergenic | 25.0% |
| ! | ATACATAGTCACAATTTGAA+AGG | + | chr5_4:17396628-17396647 | None:intergenic | 25.0% |
| ! | CTTAAAAACAAGGAATATCT+TGG | + | chr5_4:17396687-17396706 | None:intergenic | 25.0% |
| ! | TTGTGACACTTATTAAATCT+TGG | - | chr5_4:17396981-17397000 | Msa0841270:intron | 25.0% |
| ! | CACTTATTAAATCTTGGTTT+AGG | - | chr5_4:17396987-17397006 | Msa0841270:intron | 25.0% |
| ! | TAATTCTAAATGTGTAAGTG+GGG | + | chr5_4:17397199-17397218 | None:intergenic | 25.0% |
| ! | GTAATTCTAAATGTGTAAGT+GGG | + | chr5_4:17397200-17397219 | None:intergenic | 25.0% |
| ! | TGTAATTCTAAATGTGTAAG+TGG | + | chr5_4:17397201-17397220 | None:intergenic | 25.0% |
| ! | AAAATTCTCTATCTGAGAAA+GGG | + | chr5_4:17397255-17397274 | None:intergenic | 25.0% |
| ! | AAAAATTCTCTATCTGAGAA+AGG | + | chr5_4:17397256-17397275 | None:intergenic | 25.0% |
| !! | TTCTCAGATAGAGAATTTTT+AGG | - | chr5_4:17397256-17397275 | Msa0841270:intron | 25.0% |
| !! | ACATTGCAAGTTATTGATTA+CGG | + | chr5_4:17397353-17397372 | None:intergenic | 25.0% |
| ! | TAATGCGATTTACTTCTAAT+CGG | + | chr5_4:17397714-17397733 | None:intergenic | 25.0% |
| !! | GATCTTTTACCAAAAAAAAG+AGG | + | chr5_4:17397891-17397910 | None:intergenic | 25.0% |
| !!! | ATTTTAAGGAAATCTACGAA+TGG | + | chr5_4:17398188-17398207 | None:intergenic | 25.0% |
| ! | TAGATTTCCTTAAAATGTGA+AGG | - | chr5_4:17398192-17398211 | Msa0841270:intron | 25.0% |
| !! | TAATAAGCCTTCACATTTTA+AGG | + | chr5_4:17398202-17398221 | None:intergenic | 25.0% |
| !! | TAGGTTGAGTCAAATAATTA+TGG | + | chr5_4:17398225-17398244 | None:intergenic | 25.0% |
| ! | AACCTAAAGATTTAATCTAC+AGG | - | chr5_4:17398239-17398258 | Msa0841270:intron | 25.0% |
| ! | GGTTAAAAGTAAGACAAATT+AGG | + | chr5_4:17398501-17398520 | None:intergenic | 25.0% |
| !!! | GTTAATGTTTTTGTTGTTCG+TGG | + | chr5_4:17392102-17392121 | None:intergenic | 30.0% |
| GATCAAAAATTAGGGTTTGT+TGG | + | chr5_4:17392125-17392144 | None:intergenic | 30.0% | |
| TGGGGATAGATCAAAAATTA+GGG | + | chr5_4:17392133-17392152 | None:intergenic | 30.0% | |
| TTGGGGATAGATCAAAAATT+AGG | + | chr5_4:17392134-17392153 | None:intergenic | 30.0% | |
| AAGATTGAATTGATGAGAAG+GGG | + | chr5_4:17392165-17392184 | None:intergenic | 30.0% | |
| GTTAAAATTGGCAAGAAAAG+TGG | + | chr5_4:17392264-17392283 | None:intergenic | 30.0% | |
| TTACCACTCAAAGAGAAATT+GGG | + | chr5_4:17392338-17392357 | None:intergenic | 30.0% | |
| ATTACCACTCAAAGAGAAAT+TGG | + | chr5_4:17392339-17392358 | None:intergenic | 30.0% | |
| !! | AAATTTTCATACTTGCTAGC+TGG | - | chr5_4:17392407-17392426 | Msa0841270:CDS | 30.0% |
| TCAATTTCACTCTGTATCAT+TGG | - | chr5_4:17392446-17392465 | Msa0841270:CDS | 30.0% | |
| !!! | TCATCTTGATTTTCTAGCTT+TGG | - | chr5_4:17392471-17392490 | Msa0841270:CDS | 30.0% |
| !!! | TTGCTGCTTTGTCAATTTTA+TGG | - | chr5_4:17392497-17392516 | Msa0841270:intron | 30.0% |
| ! | CTTTGTCAATTTTATGGCTT+TGG | - | chr5_4:17392503-17392522 | Msa0841270:intron | 30.0% |
| !! | GATGATTGAATTTGCTATGT+TGG | - | chr5_4:17392539-17392558 | Msa0841270:intron | 30.0% |
| ! | TGGATGATTTTGCAATGATT+AGG | - | chr5_4:17392602-17392621 | Msa0841270:intron | 30.0% |
| ! | ATGATTTTGCAATGATTAGG+AGG | - | chr5_4:17392605-17392624 | Msa0841270:intron | 30.0% |
| ! | TGATTTTGCAATGATTAGGA+GGG | - | chr5_4:17392606-17392625 | Msa0841270:intron | 30.0% |
| CATAGTTAACTTTACAGTTC+TGG | - | chr5_4:17392770-17392789 | Msa0841270:intron | 30.0% | |
| !! | AACTTTACAGTTCTGGAATT+CGG | - | chr5_4:17392777-17392796 | Msa0841270:intron | 30.0% |
| TACACATAACTTACGTTACA+AGG | + | chr5_4:17392847-17392866 | None:intergenic | 30.0% | |
| AGAATATGCCTATACAATGA+TGG | + | chr5_4:17393214-17393233 | None:intergenic | 30.0% | |
| ! | TGACTTATAATTTGTGACAG+AGG | + | chr5_4:17393729-17393748 | None:intergenic | 30.0% |
| ! | TAAATAGTAAAGGGTGTGAT+AGG | - | chr5_4:17393884-17393903 | Msa0841270:intron | 30.0% |
| GGAAAGCTAAGTTAGTAAAA+TGG | - | chr5_4:17394174-17394193 | Msa0841270:intron | 30.0% | |
| AGCTAAGTTAGTAAAATGGA+TGG | - | chr5_4:17394178-17394197 | Msa0841270:intron | 30.0% | |
| AAATGGATGGAATGATTCTT+AGG | - | chr5_4:17394191-17394210 | Msa0841270:intron | 30.0% | |
| GATATGTATAATTGCATGCA+TGG | + | chr5_4:17394297-17394316 | None:intergenic | 30.0% | |
| ATTACATTCCTTAAGCTCTA+AGG | + | chr5_4:17394417-17394436 | None:intergenic | 30.0% | |
| ! | AACAAGATATTTTGTACTGC+TGG | + | chr5_4:17394647-17394666 | None:intergenic | 30.0% |
| AATGAACCAAATAAAACACG+GGG | + | chr5_4:17394679-17394698 | None:intergenic | 30.0% | |
| TAATTAACAATGATTACCGG+AGG | + | chr5_4:17394806-17394825 | None:intergenic | 30.0% | |
| TAATTGCGGAAAATTTACAC+AGG | - | chr5_4:17394876-17394895 | Msa0841270:intron | 30.0% | |
| AATTGCGGAAAATTTACACA+GGG | - | chr5_4:17394877-17394896 | Msa0841270:intron | 30.0% | |
| TTACCAATCAAAAGGTCAAA+AGG | - | chr5_4:17395137-17395156 | Msa0841270:intron | 30.0% | |
| AAAAGGTCAAAAGGAAGTTT+AGG | - | chr5_4:17395146-17395165 | Msa0841270:intron | 30.0% | |
| GTAGTTTGAACATGATTACA+GGG | - | chr5_4:17395168-17395187 | Msa0841270:intron | 30.0% | |
| ACAGGGAAAAATAATGAACA+TGG | - | chr5_4:17395185-17395204 | Msa0841270:intron | 30.0% | |
| TAATGAACATGGTAAAACAG+CGG | - | chr5_4:17395196-17395215 | Msa0841270:intron | 30.0% | |
| ! | TCACTCAAAGAGGTAAATTT+TGG | - | chr5_4:17395238-17395257 | Msa0841270:intron | 30.0% |
| !! | GTGCCTATTAAAACTTTTTC+TGG | - | chr5_4:17395360-17395379 | Msa0841270:intron | 30.0% |
| ATACACGACATATTGAATCA+TGG | + | chr5_4:17395437-17395456 | None:intergenic | 30.0% | |
| TTAAAAGGATAACACATGAG+AGG | + | chr5_4:17395522-17395541 | None:intergenic | 30.0% | |
| AAATTGCCAGAATTTGCAAA+TGG | + | chr5_4:17395758-17395777 | None:intergenic | 30.0% | |
| ! | TTTATGCTGATTGCTAATCT+TGG | - | chr5_4:17395775-17395794 | Msa0841270:intron | 30.0% |
| AACACACATACATACATCAT+GGG | + | chr5_4:17396129-17396148 | None:intergenic | 30.0% | |
| TAACACACATACATACATCA+TGG | + | chr5_4:17396130-17396149 | None:intergenic | 30.0% | |
| CACCTGTAATTCAATAGAAA+AGG | + | chr5_4:17396167-17396186 | None:intergenic | 30.0% | |
| !! | CTATATTTAAGTTTGTTGCG+GGG | + | chr5_4:17396320-17396339 | None:intergenic | 30.0% |
| !! | CCTATATTTAAGTTTGTTGC+GGG | + | chr5_4:17396321-17396340 | None:intergenic | 30.0% |
| ! | TTATTGCTGTTCAATGAATG+AGG | - | chr5_4:17396520-17396539 | Msa0841270:intron | 30.0% |
| AACATACCATGCTTTATGTT+TGG | - | chr5_4:17396588-17396607 | Msa0841270:intron | 30.0% | |
| AAATTGCCAAACATAAAGCA+TGG | + | chr5_4:17396597-17396616 | None:intergenic | 30.0% | |
| AGTACACTTGCTTAAAAACA+AGG | + | chr5_4:17396697-17396716 | None:intergenic | 30.0% | |
| ! | AATTACACACATTTTCATCG+AGG | - | chr5_4:17396722-17396741 | Msa0841270:intron | 30.0% |
| ! | TGAAAATCAGTGCTGTTAAA+TGG | + | chr5_4:17396883-17396902 | None:intergenic | 30.0% |
| GAGTATGTACATGTATGTTT+GGG | - | chr5_4:17397009-17397028 | Msa0841270:intron | 30.0% | |
| AGTATGTACATGTATGTTTG+GGG | - | chr5_4:17397010-17397029 | Msa0841270:intron | 30.0% | |
| TGTGAAGTTATGTTTGACAT+TGG | - | chr5_4:17397052-17397071 | Msa0841270:intron | 30.0% | |
| GTGAAGTTATGTTTGACATT+GGG | - | chr5_4:17397053-17397072 | Msa0841270:intron | 30.0% | |
| ! | TTCATGCTTTTCTTTTTCTG+TGG | - | chr5_4:17397143-17397162 | Msa0841270:intron | 30.0% |
| CTATTAAAACCTTAAACCGT+GGG | + | chr5_4:17397285-17397304 | None:intergenic | 30.0% | |
| AATTCTCACATTTCTGATTC+CGG | - | chr5_4:17397609-17397628 | Msa0841270:intron | 30.0% | |
| AGTTTAAAAAAGGGAACACA+TGG | - | chr5_4:17397823-17397842 | Msa0841270:exon | 30.0% | |
| TCAAACAGTGCATAAATAGA+TGG | - | chr5_4:17398126-17398145 | Msa0841270:intron | 30.0% | |
| ! | CATAAATAGATGGACTTAGA+TGG | - | chr5_4:17398136-17398155 | Msa0841270:intron | 30.0% |
| CTCCTGTAGATTAAATCTTT+AGG | + | chr5_4:17398244-17398263 | None:intergenic | 30.0% | |
| TAGGATCATATACTGCATTT+CGG | - | chr5_4:17398351-17398370 | Msa0841270:intron | 30.0% | |
| GTAAGACAAATTAGGAATGA+GGG | + | chr5_4:17398493-17398512 | None:intergenic | 30.0% | |
| AGTAAGACAAATTAGGAATG+AGG | + | chr5_4:17398494-17398513 | None:intergenic | 30.0% | |
| !!! | TGATCCATGTTGTTTTGAAT+GGG | + | chr5_4:17398523-17398542 | None:intergenic | 30.0% |
| !!! | ATGATCCATGTTGTTTTGAA+TGG | + | chr5_4:17398524-17398543 | None:intergenic | 30.0% |
| AAACTTTCAAGCTGAGAAAA+AGG | + | chr5_4:17398571-17398590 | None:intergenic | 30.0% | |
| AGATTGAATTGATGAGAAGG+GGG | + | chr5_4:17392164-17392183 | None:intergenic | 35.0% | |
| GTGAATTGGGGATTTGAATT+GGG | + | chr5_4:17392221-17392240 | None:intergenic | 35.0% | |
| AGTAGCAGTGAATATACAGT+AGG | + | chr5_4:17392291-17392310 | None:intergenic | 35.0% | |
| TACCACTCAAAGAGAAATTG+GGG | + | chr5_4:17392337-17392356 | None:intergenic | 35.0% | |
| !! | TGAATTTGCTATGTTGGGTT+TGG | - | chr5_4:17392545-17392564 | Msa0841270:intron | 35.0% |
| ! | GATTTTGCAATGATTAGGAG+GGG | - | chr5_4:17392607-17392626 | Msa0841270:intron | 35.0% |
| GTTAATGGAATGGTTCATTG+CGG | - | chr5_4:17392647-17392666 | Msa0841270:intron | 35.0% | |
| GTTATGTGTATGTTGCAGAA+TGG | - | chr5_4:17392857-17392876 | Msa0841270:intron | 35.0% | |
| AAGTATGGGCAATAATGAGA+TGG | - | chr5_4:17392915-17392934 | Msa0841270:intron | 35.0% | |
| GGATAAAACAGCAAAAGAGA+AGG | - | chr5_4:17392936-17392955 | Msa0841270:intron | 35.0% | |
| ! | TCTTACATTTTGTGTGACGA+AGG | - | chr5_4:17393030-17393049 | Msa0841270:CDS | 35.0% |
| TTCGTTAAAAACCTGAAAGC+TGG | + | chr5_4:17393126-17393145 | None:intergenic | 35.0% | |
| ACCATTCTCCATCATTGTAT+AGG | - | chr5_4:17393203-17393222 | Msa0841270:CDS | 35.0% | |
| !! | AGCTCAAGTAAGGAGTATTA+TGG | + | chr5_4:17393418-17393437 | None:intergenic | 35.0% |
| !!! | AAGGTTTTAGATAGGGTAGA+AGG | - | chr5_4:17393519-17393538 | Msa0841270:intron | 35.0% |
| ! | GTCTACAGCAGAAAAAGTAT+AGG | + | chr5_4:17393615-17393634 | None:intergenic | 35.0% |
| CTTTCCCACGTAATTAATGA+AGG | + | chr5_4:17393834-17393853 | None:intergenic | 35.0% | |
| ! | GACTTATAATTTGGAGTGGA+TGG | - | chr5_4:17393943-17393962 | Msa0841270:intron | 35.0% |
| CTTTGTAAGATTTAGCGCAA+AGG | + | chr5_4:17394027-17394046 | None:intergenic | 35.0% | |
| AAAATCTCTACATCCTTGGT+TGG | + | chr5_4:17394248-17394267 | None:intergenic | 35.0% | |
| TAAATTCCTCTTCATACACC+GGG | + | chr5_4:17394331-17394350 | None:intergenic | 35.0% | |
| GTAAATTCCTCTTCATACAC+CGG | + | chr5_4:17394332-17394351 | None:intergenic | 35.0% | |
| !! | CTTAAGCTCTAAGGAATTAG+GGG | + | chr5_4:17394408-17394427 | None:intergenic | 35.0% |
| !! | CCTTAAGCTCTAAGGAATTA+GGG | + | chr5_4:17394409-17394428 | None:intergenic | 35.0% |
| !! | TCCTTAAGCTCTAAGGAATT+AGG | + | chr5_4:17394410-17394429 | None:intergenic | 35.0% |
| AAACGTCTATGTCTTAACGA+AGG | - | chr5_4:17394463-17394482 | Msa0841270:CDS | 35.0% | |
| AACGTCTATGTCTTAACGAA+GGG | - | chr5_4:17394464-17394483 | Msa0841270:CDS | 35.0% | |
| CAATCACTTCTTGCTAATTG+CGG | - | chr5_4:17394862-17394881 | Msa0841270:intron | 35.0% | |
| AGGAACACAAAAATGCAGAA+GGG | + | chr5_4:17394970-17394989 | None:intergenic | 35.0% | |
| AAGGAACACAAAAATGCAGA+AGG | + | chr5_4:17394971-17394990 | None:intergenic | 35.0% | |
| ! | TCCTTTTCCTATTCTGTGAA+GGG | - | chr5_4:17395010-17395029 | Msa0841270:intron | 35.0% |
| GGCTTGTCCTTATATAAGTA+GGG | - | chr5_4:17395031-17395050 | Msa0841270:intron | 35.0% | |
| ! | AATTTTTCCTTCACTTCAGG+AGG | + | chr5_4:17395119-17395138 | None:intergenic | 35.0% |
| ! | GGTAATTTTTCCTTCACTTC+AGG | + | chr5_4:17395122-17395141 | None:intergenic | 35.0% |
| ! | CTTCCTTTTGACCTTTTGAT+TGG | + | chr5_4:17395143-17395162 | None:intergenic | 35.0% |
| GGTAGTTTGAACATGATTAC+AGG | - | chr5_4:17395167-17395186 | Msa0841270:intron | 35.0% | |
| AATGAACATGGTAAAACAGC+GGG | - | chr5_4:17395197-17395216 | Msa0841270:intron | 35.0% | |
| CTAATGGAATTCACTCAAAG+AGG | - | chr5_4:17395228-17395247 | Msa0841270:intron | 35.0% | |
| TCTTGCTCAGACTTATTTGA+AGG | - | chr5_4:17395327-17395346 | Msa0841270:intron | 35.0% | |
| ! | GTTTTCATTCTGTAGGGATA+TGG | + | chr5_4:17395481-17395500 | None:intergenic | 35.0% |
| TATTTATCTCCTAATGCCTG+AGG | - | chr5_4:17395634-17395653 | Msa0841270:CDS | 35.0% | |
| CAAATCAAGTAACTGTGTAG+GGG | + | chr5_4:17395661-17395680 | None:intergenic | 35.0% | |
| GCAAATCAAGTAACTGTGTA+GGG | + | chr5_4:17395662-17395681 | None:intergenic | 35.0% | |
| AGCAAATCAAGTAACTGTGT+AGG | + | chr5_4:17395663-17395682 | None:intergenic | 35.0% | |
| AGTAATGTACTCAACAGGAT+TGG | + | chr5_4:17395732-17395751 | None:intergenic | 35.0% | |
| ! | ACTTTGCCATTTGCAAATTC+TGG | - | chr5_4:17395749-17395768 | Msa0841270:intron | 35.0% |
| !! | AGTTATGAAGGTACTAGTGA+AGG | - | chr5_4:17395819-17395838 | Msa0841270:CDS | 35.0% |
| TCAGAATGTAAGTTCTGTGA+CGG | - | chr5_4:17395857-17395876 | Msa0841270:intron | 35.0% | |
| AGTGCAAAAATGTGTGTTTG+TGG | + | chr5_4:17395914-17395933 | None:intergenic | 35.0% | |
| ATAGGGCTCTCAATTGAAAT+CGG | - | chr5_4:17396012-17396031 | Msa0841270:CDS | 35.0% | |
| GTTTGATTAACCACTGTATG+AGG | + | chr5_4:17396246-17396265 | None:intergenic | 35.0% | |
| TATGTCTGTCATTCCTATCT+CGG | - | chr5_4:17396266-17396285 | Msa0841270:intron | 35.0% | |
| CCCGCAACAAACTTAAATAT+AGG | - | chr5_4:17396318-17396337 | Msa0841270:intron | 35.0% | |
| ATAGTGTTCAGTCACAACTT+TGG | - | chr5_4:17396445-17396464 | Msa0841270:intron | 35.0% | |
| ATGTTGAATGTAAGCAAGAG+AGG | + | chr5_4:17396573-17396592 | None:intergenic | 35.0% | |
| ! | ATTTTCATCGAGGTTGTCAA+AGG | - | chr5_4:17396732-17396751 | Msa0841270:intron | 35.0% |
| !!! | GTGTTTATATGGTGGGTTTT+AGG | + | chr5_4:17396765-17396784 | None:intergenic | 35.0% |
| AAATGGCGTGTTTATATGGT+GGG | + | chr5_4:17396772-17396791 | None:intergenic | 35.0% | |
| AGCTCTTCACAAATTGTCTA+TGG | - | chr5_4:17396813-17396832 | Msa0841270:intron | 35.0% | |
| TCTTCACAAATTGTCTATGG+CGG | - | chr5_4:17396816-17396835 | Msa0841270:intron | 35.0% | |
| ! | AAATCAGTGCTGTTAAATGG+TGG | + | chr5_4:17396880-17396899 | None:intergenic | 35.0% |
| !!! | AACAGCACTGATTTTCATTG+AGG | - | chr5_4:17396886-17396905 | Msa0841270:intron | 35.0% |
| GGAGTATGTACATGTATGTT+TGG | - | chr5_4:17397008-17397027 | Msa0841270:intron | 35.0% | |
| !!! | GAGAATTTTTAGGTAACCCA+CGG | - | chr5_4:17397266-17397285 | Msa0841270:intron | 35.0% |
| GCTATTAAAACCTTAAACCG+TGG | + | chr5_4:17397286-17397305 | None:intergenic | 35.0% | |
| !!! | ATAGCTTGTAGCTTTTTTCC+TGG | - | chr5_4:17397301-17397320 | Msa0841270:intron | 35.0% |
| !!! | TAGCTTGTAGCTTTTTTCCT+GGG | - | chr5_4:17397302-17397321 | Msa0841270:intron | 35.0% |
| AAAAACGAGTTATATTCCCC+AGG | + | chr5_4:17397322-17397341 | None:intergenic | 35.0% | |
| AAAGACGAAAGCAGTCTAAT+AGG | - | chr5_4:17397501-17397520 | Msa0841270:intron | 35.0% | |
| AAGACGAAAGCAGTCTAATA+GGG | - | chr5_4:17397502-17397521 | Msa0841270:intron | 35.0% | |
| TGAAGGAAATAAAGGCTACA+TGG | + | chr5_4:17397573-17397592 | None:intergenic | 35.0% | |
| GCAAACACTGAAGGAAATAA+AGG | + | chr5_4:17397581-17397600 | None:intergenic | 35.0% | |
| TATGATCAAGCAAACACTGA+AGG | + | chr5_4:17397590-17397609 | None:intergenic | 35.0% | |
| TGAAAACAGCACATTCAAAC+CGG | + | chr5_4:17397631-17397650 | None:intergenic | 35.0% | |
| AAAAAAGGGAACACATGGAA+AGG | - | chr5_4:17397828-17397847 | Msa0841270:exon | 35.0% | |
| AAAAAGGGAACACATGGAAA+GGG | - | chr5_4:17397829-17397848 | Msa0841270:exon | 35.0% | |
| !!! | GACTTGTGACCTCTTTTTTT+TGG | - | chr5_4:17397879-17397898 | Msa0841270:intron | 35.0% |
| !! | ACAGTTTTCACCTTATTTCC+AGG | - | chr5_4:17398036-17398055 | Msa0841270:intron | 35.0% |
| TTTAATCTACAGGAGAGACT+TGG | - | chr5_4:17398249-17398268 | Msa0841270:intron | 35.0% | |
| TTAATCTACAGGAGAGACTT+GGG | - | chr5_4:17398250-17398269 | Msa0841270:intron | 35.0% | |
| AGGATCATATACTGCATTTC+GGG | - | chr5_4:17398352-17398371 | Msa0841270:intron | 35.0% | |
| TAACCCCATTCAAAACAACA+TGG | - | chr5_4:17398516-17398535 | Msa0841270:five_prime_UTR | 35.0% | |
| !!! | GATCCATGTTGTTTTGAATG+GGG | + | chr5_4:17398522-17398541 | None:intergenic | 35.0% |
| !!! | TGTTTTTGTTGTTCGTGGAG+AGG | + | chr5_4:17392097-17392116 | None:intergenic | 40.0% |
| TGAGAAGGGGGAAAAGAATT+GGG | + | chr5_4:17392152-17392171 | None:intergenic | 40.0% | |
| ATGAGAAGGGGGAAAAGAAT+TGG | + | chr5_4:17392153-17392172 | None:intergenic | 40.0% | |
| GGTGAATTGGGGATTTGAAT+TGG | + | chr5_4:17392222-17392241 | None:intergenic | 40.0% | |
| CTAAGGAAGAAGGTGAATTG+GGG | + | chr5_4:17392233-17392252 | None:intergenic | 40.0% | |
| GCTAAGGAAGAAGGTGAATT+GGG | + | chr5_4:17392234-17392253 | None:intergenic | 40.0% | |
| AGCTAAGGAAGAAGGTGAAT+TGG | + | chr5_4:17392235-17392254 | None:intergenic | 40.0% | |
| GAAAAGTGGGAATTGAGCTA+AGG | + | chr5_4:17392250-17392269 | None:intergenic | 40.0% | |
| ACAGTAGGAGGGGTTAAAAT+TGG | + | chr5_4:17392276-17392295 | None:intergenic | 40.0% | |
| CAGTGAATATACAGTAGGAG+GGG | + | chr5_4:17392286-17392305 | None:intergenic | 40.0% | |
| GCAGTGAATATACAGTAGGA+GGG | + | chr5_4:17392287-17392306 | None:intergenic | 40.0% | |
| AGCAGTGAATATACAGTAGG+AGG | + | chr5_4:17392288-17392307 | None:intergenic | 40.0% | |
| ATCCCCAATTTCTCTTTGAG+TGG | - | chr5_4:17392332-17392351 | Msa0841270:three_prime_UTR | 40.0% | |
| CAATGATTAGGAGGGGAATT+AGG | - | chr5_4:17392614-17392633 | Msa0841270:intron | 40.0% | |
| !! | TTAGGATGGTGGGTTGTTAA+TGG | - | chr5_4:17392632-17392651 | Msa0841270:intron | 40.0% |
| !! | ATGGTGGGTTGTTAATGGAA+TGG | - | chr5_4:17392637-17392656 | Msa0841270:intron | 40.0% |
| AATTAGACCTGTGATGTTGG+TGG | + | chr5_4:17392976-17392995 | None:intergenic | 40.0% | |
| GTCAATTAGACCTGTGATGT+TGG | + | chr5_4:17392979-17392998 | None:intergenic | 40.0% | |
| ! | GCCTATACAATGATGGAGAA+TGG | + | chr5_4:17393207-17393226 | None:intergenic | 40.0% |
| ! | GCGGACTACATAAAACATAG+TGG | - | chr5_4:17394102-17394121 | Msa0841270:intron | 40.0% |
| CAGCAAAATCTCTACATCCT+TGG | + | chr5_4:17394252-17394271 | None:intergenic | 40.0% | |
| ! | CAAGGATGTAGAGATTTTGC+TGG | - | chr5_4:17394250-17394269 | Msa0841270:intron | 40.0% |
| AAATTTCCCGGTGTATGAAG+AGG | - | chr5_4:17394322-17394341 | Msa0841270:CDS | 40.0% | |
| CCCTAATTCCTTAGAGCTTA+AGG | - | chr5_4:17394406-17394425 | Msa0841270:CDS | 40.0% | |
| !! | ACACTTCCCCGTGTTTTATT+TGG | - | chr5_4:17394670-17394689 | Msa0841270:intron | 40.0% |
| TACATTGCAACATAGGGATG+TGG | + | chr5_4:17394749-17394768 | None:intergenic | 40.0% | |
| TGGGGATACATTGCAACATA+GGG | + | chr5_4:17394755-17394774 | None:intergenic | 40.0% | |
| ATGGGGATACATTGCAACAT+AGG | + | chr5_4:17394756-17394775 | None:intergenic | 40.0% | |
| TATGTTGCAATGTATCCCCA+TGG | - | chr5_4:17394755-17394774 | Msa0841270:intron | 40.0% | |
| ATGAGCATATATGCCACCAT+GGG | + | chr5_4:17394774-17394793 | None:intergenic | 40.0% | |
| CGCAATTAGCAAGAAGTGAT+TGG | + | chr5_4:17394864-17394883 | None:intergenic | 40.0% | |
| ! | GTCCTTTTCCTATTCTGTGA+AGG | - | chr5_4:17395009-17395028 | Msa0841270:intron | 40.0% |
| GGGCTTGTCCTTATATAAGT+AGG | - | chr5_4:17395030-17395049 | Msa0841270:intron | 40.0% | |
| AGTAACACGAGTTTACATGC+AGG | - | chr5_4:17395058-17395077 | Msa0841270:intron | 40.0% | |
| GTAACACGAGTTTACATGCA+GGG | - | chr5_4:17395059-17395078 | Msa0841270:intron | 40.0% | |
| TTTACCATCAGTTTCCATGC+TGG | + | chr5_4:17395096-17395115 | None:intergenic | 40.0% | |
| ATGAACATGGTAAAACAGCG+GGG | - | chr5_4:17395198-17395217 | Msa0841270:intron | 40.0% | |
| CATGTCCAAGAGAAAGTTCT+TGG | - | chr5_4:17395388-17395407 | Msa0841270:intron | 40.0% | |
| AAGCACCAAGAACTTTCTCT+TGG | + | chr5_4:17395396-17395415 | None:intergenic | 40.0% | |
| !! | AGAGAAAGTTCTTGGTGCTT+TGG | - | chr5_4:17395396-17395415 | Msa0841270:intron | 40.0% |
| ! | CGGGAAGTTTTCATTCTGTA+GGG | + | chr5_4:17395487-17395506 | None:intergenic | 40.0% |
| GGCAAAGTAATGTACTCAAC+AGG | + | chr5_4:17395737-17395756 | None:intergenic | 40.0% | |
| TGCTAATCTTGGATTTGCAG+TGG | - | chr5_4:17395786-17395805 | Msa0841270:intron | 40.0% | |
| GGTGAAAGTGGAAGTTATGA+AGG | - | chr5_4:17395807-17395826 | Msa0841270:CDS | 40.0% | |
| TAGGGCTCTCAATTGAAATC+GGG | - | chr5_4:17396013-17396032 | Msa0841270:CDS | 40.0% | |
| !! | GCTGGATTCTTTTGAAGGTT+TGG | - | chr5_4:17396042-17396061 | Msa0841270:intron | 40.0% |
| ACAGGTGAACCATCTCAAAA+TGG | - | chr5_4:17396180-17396199 | Msa0841270:intron | 40.0% | |
| TCAGCGCATACTTCACAAAA+TGG | - | chr5_4:17396207-17396226 | Msa0841270:intron | 40.0% | |
| CAGCGCATACTTCACAAAAT+GGG | - | chr5_4:17396208-17396227 | Msa0841270:intron | 40.0% | |
| AGCGCATACTTCACAAAATG+GGG | - | chr5_4:17396209-17396228 | Msa0841270:intron | 40.0% | |
| ACTTAATGCACCTCATACAG+TGG | - | chr5_4:17396233-17396252 | Msa0841270:intron | 40.0% | |
| ! | TCTTGGTGACAAATACTGAG+AGG | + | chr5_4:17396670-17396689 | None:intergenic | 40.0% |
| GAAATGGCGTGTTTATATGG+TGG | + | chr5_4:17396773-17396792 | None:intergenic | 40.0% | |
| GACGAAATGGCGTGTTTATA+TGG | + | chr5_4:17396776-17396795 | None:intergenic | 40.0% | |
| TAAACACGCCATTTCGTCTA+TGG | - | chr5_4:17396778-17396797 | Msa0841270:intron | 40.0% | |
| CAATTTGTGAAGAGCTGTCA+TGG | + | chr5_4:17396809-17396828 | None:intergenic | 40.0% | |
| TTTAGGTAACCCACGGTTTA+AGG | - | chr5_4:17397273-17397292 | Msa0841270:intron | 40.0% | |
| !!! | AGCTTGTAGCTTTTTTCCTG+GGG | - | chr5_4:17397303-17397322 | Msa0841270:intron | 40.0% |
| AGTCTAATAGGGAATCTGCT+AGG | - | chr5_4:17397513-17397532 | Msa0841270:intron | 40.0% | |
| !!! | GGTTTGAATGTGCTGTTTTC+AGG | - | chr5_4:17397630-17397649 | Msa0841270:CDS | 40.0% |
| GCGATTTACTTCTAATCGGA+GGG | + | chr5_4:17397710-17397729 | None:intergenic | 40.0% | |
| TGCGATTTACTTCTAATCGG+AGG | + | chr5_4:17397711-17397730 | None:intergenic | 40.0% | |
| AAAAGGGAACACATGGAAAG+GGG | - | chr5_4:17397830-17397849 | Msa0841270:exon | 40.0% | |
| ! | AGATGGACTTAGATGGAGTT+TGG | - | chr5_4:17398143-17398162 | Msa0841270:intron | 40.0% |
| !! | CGAATGGTGTAGGTTTTAGT+TGG | + | chr5_4:17398172-17398191 | None:intergenic | 40.0% |
| AGGAAATCTACGAATGGTGT+AGG | + | chr5_4:17398182-17398201 | None:intergenic | 40.0% | |
| TAATCTACAGGAGAGACTTG+GGG | - | chr5_4:17398251-17398270 | Msa0841270:intron | 40.0% | |
| TGTAACGACAGTCAACAAAG+TGG | - | chr5_4:17398300-17398319 | Msa0841270:intron | 40.0% | |
| GAGAAGGGGGAAAAGAATTG+GGG | + | chr5_4:17392151-17392170 | None:intergenic | 45.0% | |
| GGGAATTGAGCTAAGGAAGA+AGG | + | chr5_4:17392243-17392262 | None:intergenic | 45.0% | |
| GATTAGGAGGGGAATTAGGA+TGG | - | chr5_4:17392618-17392637 | Msa0841270:intron | 45.0% | |
| TATTCTCCTATGCCTCCACA+TGG | - | chr5_4:17393228-17393247 | Msa0841270:CDS | 45.0% | |
| ! | ATGAATCCATGTGGAGGCAT+AGG | + | chr5_4:17393237-17393256 | None:intergenic | 45.0% |
| TATGCCTCCACATGGATTCA+TGG | - | chr5_4:17393236-17393255 | Msa0841270:CDS | 45.0% | |
| CACATATAAGGGTGAGCTTG+GGG | + | chr5_4:17393270-17393289 | None:intergenic | 45.0% | |
| CCACATATAAGGGTGAGCTT+GGG | + | chr5_4:17393271-17393290 | None:intergenic | 45.0% | |
| CCAAGCTCACCCTTATATGT+GGG | - | chr5_4:17393269-17393288 | Msa0841270:intron | 45.0% | |
| CAAGCTCACCCTTATATGTG+GGG | - | chr5_4:17393270-17393289 | Msa0841270:intron | 45.0% | |
| ACCATAGTCTGTGCCAAATC+GGG | + | chr5_4:17393327-17393346 | None:intergenic | 45.0% | |
| CACCATAGTCTGTGCCAAAT+CGG | + | chr5_4:17393328-17393347 | None:intergenic | 45.0% | |
| ATTGGACTGCAGCTCAAGTA+AGG | + | chr5_4:17393428-17393447 | None:intergenic | 45.0% | |
| GAGATGCCTGAAAGAACCAT+CGG | - | chr5_4:17394137-17394156 | Msa0841270:intron | 45.0% | |
| CTGAAAGAACCATCGGAGAT+GGG | - | chr5_4:17394144-17394163 | Msa0841270:intron | 45.0% | |
| ATGTTGTCAGACTCCAACCA+AGG | - | chr5_4:17394232-17394251 | Msa0841270:intron | 45.0% | |
| TTTACTCGCTCTCATGTGCT+AGG | - | chr5_4:17394347-17394366 | Msa0841270:CDS | 45.0% | |
| ATTGCAACATAGGGATGTGG+TGG | + | chr5_4:17394746-17394765 | None:intergenic | 45.0% | |
| TGAGCATATATGCCACCATG+GGG | + | chr5_4:17394773-17394792 | None:intergenic | 45.0% | |
| GATGAGCATATATGCCACCA+TGG | + | chr5_4:17394775-17394794 | None:intergenic | 45.0% | |
| AACAATGATTACCGGAGGCA+TGG | + | chr5_4:17394801-17394820 | None:intergenic | 45.0% | |
| GTAGGCATGGCATAAGGATA+TGG | + | chr5_4:17394910-17394929 | None:intergenic | 45.0% | |
| ! | TTTGGAGTAGGCATGGCATA+AGG | + | chr5_4:17394916-17394935 | None:intergenic | 45.0% |
| TATGCCATGCCTACTCCAAA+CGG | - | chr5_4:17394916-17394935 | Msa0841270:CDS | 45.0% | |
| ! | AATACCGTTTGGAGTAGGCA+TGG | + | chr5_4:17394923-17394942 | None:intergenic | 45.0% |
| ! | TCAGCAATACCGTTTGGAGT+AGG | + | chr5_4:17394928-17394947 | None:intergenic | 45.0% |
| TACTCCAAACGGTATTGCTG+AGG | - | chr5_4:17394927-17394946 | Msa0841270:CDS | 45.0% | |
| GAAGGGTGAAAAACTCACAG+AGG | + | chr5_4:17394953-17394972 | None:intergenic | 45.0% | |
| CAGACAGAGAAGGAGAAAGA+AGG | + | chr5_4:17394990-17395009 | None:intergenic | 45.0% | |
| AGGAAAAGGACAGACAGAGA+AGG | + | chr5_4:17395000-17395019 | None:intergenic | 45.0% | |
| GCCCTTCACAGAATAGGAAA+AGG | + | chr5_4:17395014-17395033 | None:intergenic | 45.0% | |
| TGGTAAACCTCCTGAAGTGA+AGG | - | chr5_4:17395109-17395128 | Msa0841270:intron | 45.0% | |
| !! | GAAAGTTCTTGGTGCTTTGG+AGG | - | chr5_4:17395399-17395418 | Msa0841270:intron | 45.0% |
| ! | GCGGGAAGTTTTCATTCTGT+AGG | + | chr5_4:17395488-17395507 | None:intergenic | 45.0% |
| ATGAGAGGAAACATCAGCTG+CGG | + | chr5_4:17395507-17395526 | None:intergenic | 45.0% | |
| TGGATTTGCAGTGGTGAAAG+TGG | - | chr5_4:17395795-17395814 | Msa0841270:intron | 45.0% | |
| !!! | GCTGAACTGCCATTTTGAGA+TGG | + | chr5_4:17396192-17396211 | None:intergenic | 45.0% |
| GCGCATACTTCACAAAATGG+GGG | - | chr5_4:17396210-17396229 | Msa0841270:intron | 45.0% | |
| TCAGTCACAACTTTGGCTAC+AGG | - | chr5_4:17396452-17396471 | Msa0841270:intron | 45.0% | |
| TTTGTGAAGAGCTGTCATGG+CGG | + | chr5_4:17396806-17396825 | None:intergenic | 45.0% | |
| TGTTAAATGGTGGCACACCA+TGG | + | chr5_4:17396870-17396889 | None:intergenic | 45.0% | |
| ! | TTGACATTGGGCATTGTCAG+AGG | - | chr5_4:17397065-17397084 | Msa0841270:intron | 45.0% |
| TCGATAAACCCCTGTTCCAA+GGG | + | chr5_4:17397111-17397130 | None:intergenic | 45.0% | |
| TTCGATAAACCCCTGTTCCA+AGG | + | chr5_4:17397112-17397131 | None:intergenic | 45.0% | |
| TACCTTGAGAGCTGCATTCT+CGG | + | chr5_4:17397761-17397780 | None:intergenic | 45.0% | |
| ! | TACTTCCCCTGGTTTGAACT+CGG | - | chr5_4:17397856-17397875 | Msa0841270:five_prime_UTR | 45.0% |
| TCAACAAAGTGGACAGACAG+AGG | - | chr5_4:17398311-17398330 | Msa0841270:intron | 45.0% | |
| !!! | TAAATTTTAAGATATATAAA+AGG | - | chr5_4:17395939-17395958 | Msa0841270:intron | 5.0% |
| !! | GAAAATATAAATATTTAAAT+AGG | + | chr5_4:17397445-17397464 | None:intergenic | 5.0% |
| ! | CTCTCCAGATCAAGCTCTGA+AGG | - | chr5_4:17392309-17392328 | Msa0841270:three_prime_UTR | 50.0% |
| GGATCCTTCAGAGCTTGATC+TGG | + | chr5_4:17392316-17392335 | None:intergenic | 50.0% | |
| TAGGAGGGGAATTAGGATGG+TGG | - | chr5_4:17392621-17392640 | Msa0841270:intron | 50.0% | |
| AGGAGGGGAATTAGGATGGT+GGG | - | chr5_4:17392622-17392641 | Msa0841270:intron | 50.0% | |
| ! | TAGACCTGTGATGTTGGTGG+CGG | + | chr5_4:17392973-17392992 | None:intergenic | 50.0% |
| CGAAGGCTGCTCCTAGAAAA+AGG | + | chr5_4:17393066-17393085 | None:intergenic | 50.0% | |
| ATTAACTGGTCCGGTGCTTG+TGG | + | chr5_4:17393093-17393112 | None:intergenic | 50.0% | |
| CCAGTCGGTATTAACTGGTC+CGG | + | chr5_4:17393102-17393121 | None:intergenic | 50.0% | |
| ! | CGGACCAGTTAATACCGACT+GGG | - | chr5_4:17393100-17393119 | Msa0841270:intron | 50.0% |
| CTTGACGCCATGAATCCATG+TGG | + | chr5_4:17393246-17393265 | None:intergenic | 50.0% | |
| CCCAAGCTCACCCTTATATG+TGG | - | chr5_4:17393268-17393287 | Msa0841270:intron | 50.0% | |
| CCCACATATAAGGGTGAGCT+TGG | + | chr5_4:17393272-17393291 | None:intergenic | 50.0% | |
| CCTGGACACCCCACATATAA+GGG | + | chr5_4:17393281-17393300 | None:intergenic | 50.0% | |
| ACCTGGACACCCCACATATA+AGG | + | chr5_4:17393282-17393301 | None:intergenic | 50.0% | |
| CCATCTCCGATGGTTCTTTC+AGG | + | chr5_4:17394146-17394165 | None:intergenic | 50.0% | |
| CCTGAAAGAACCATCGGAGA+TGG | - | chr5_4:17394143-17394162 | Msa0841270:intron | 50.0% | |
| CAGCACATGATGCCTCCTTA+TGG | - | chr5_4:17394716-17394735 | Msa0841270:CDS | 50.0% | |
| ! | TGTGGTGGAGTACCATAAGG+AGG | + | chr5_4:17394731-17394750 | None:intergenic | 50.0% |
| ! | GGATGTGGTGGAGTACCATA+AGG | + | chr5_4:17394734-17394753 | None:intergenic | 50.0% |
| GTTGCAATGTATCCCCATGG+TGG | - | chr5_4:17394758-17394777 | Msa0841270:intron | 50.0% | |
| ! | ATGATTACCGGAGGCATGGA+TGG | + | chr5_4:17394797-17394816 | None:intergenic | 50.0% |
| GGACAAGCCCTTCACAGAAT+AGG | + | chr5_4:17395020-17395039 | None:intergenic | 50.0% | |
| TGAGAGGAAACATCAGCTGC+GGG | + | chr5_4:17395506-17395525 | None:intergenic | 50.0% | |
| GTCATTCCTATCTCGGCAAG+TGG | - | chr5_4:17396273-17396292 | Msa0841270:intron | 50.0% | |
| GCGGGAATGTTGGATGAAGT+TGG | + | chr5_4:17396363-17396382 | None:intergenic | 50.0% | |
| CATCTACCACAGTTGCAGGA+GGG | - | chr5_4:17396400-17396419 | Msa0841270:intron | 50.0% | |
| ATCTACCACAGTTGCAGGAG+GGG | - | chr5_4:17396401-17396420 | Msa0841270:intron | 50.0% | |
| TCGAGGTTGTCAAAGGCAGA+AGG | - | chr5_4:17396739-17396758 | Msa0841270:intron | 50.0% | |
| TAAATGGTGGCACACCATGG+CGG | + | chr5_4:17396867-17396886 | None:intergenic | 50.0% | |
| TTCCGAGAATGCAGCTCTCA+AGG | - | chr5_4:17397756-17397775 | Msa0841270:intron | 50.0% | |
| ! | ACTTCCCCTGGTTTGAACTC+GGG | - | chr5_4:17397857-17397876 | Msa0841270:five_prime_UTR | 50.0% |
| AAGTCCCGAGTTCAAACCAG+GGG | + | chr5_4:17397864-17397883 | None:intergenic | 50.0% | |
| CAAGTCCCGAGTTCAAACCA+GGG | + | chr5_4:17397865-17397884 | None:intergenic | 50.0% | |
| ACAAGTCCCGAGTTCAAACC+AGG | + | chr5_4:17397866-17397885 | None:intergenic | 50.0% | |
| CTGGAGAGCTCCTGGAAATA+AGG | + | chr5_4:17398049-17398068 | None:intergenic | 50.0% | |
| CTTATTTCCAGGAGCTCTCC+AGG | - | chr5_4:17398047-17398066 | Msa0841270:intron | 50.0% | |
| GATAAATCCTGGAGAGCTCC+TGG | + | chr5_4:17398057-17398076 | None:intergenic | 50.0% | |
| AGAGACTTGGGGAACAACCA+GGG | - | chr5_4:17398262-17398281 | Msa0841270:intron | 50.0% | |
| ! | CACATGTGTTGATCGTTCCC+TGG | + | chr5_4:17398282-17398301 | None:intergenic | 50.0% |
| !! | CGCGCTCTTGCTATTGAGTT+AGG | + | chr5_4:17398385-17398404 | None:intergenic | 50.0% |
| GTTCGTGGAGAGGAACTCGT+GGG | + | chr5_4:17392087-17392106 | None:intergenic | 55.0% | |
| TGTTCGTGGAGAGGAACTCG+TGG | + | chr5_4:17392088-17392107 | None:intergenic | 55.0% | |
| CCGGACCAGTTAATACCGAC+TGG | - | chr5_4:17393099-17393118 | Msa0841270:intron | 55.0% | |
| CTGGCCCAGTCGGTATTAAC+TGG | + | chr5_4:17393107-17393126 | None:intergenic | 55.0% | |
| AACCTGAAAGCTGGCCCAGT+CGG | + | chr5_4:17393117-17393136 | None:intergenic | 55.0% | |
| GACGCCATGAATCCATGTGG+AGG | + | chr5_4:17393243-17393262 | None:intergenic | 55.0% | |
| ! | CCCTTATATGTGGGGTGTCC+AGG | - | chr5_4:17393278-17393297 | Msa0841270:intron | 55.0% |
| !! | GCCCGATTTGGCACAGACTA+TGG | - | chr5_4:17393323-17393342 | Msa0841270:intron | 55.0% |
| CCAACAATGCCCATCTCCGA+TGG | + | chr5_4:17394156-17394175 | None:intergenic | 55.0% | |
| ! | CCATCGGAGATGGGCATTGT+TGG | - | chr5_4:17394153-17394172 | Msa0841270:intron | 55.0% |
| TGCTCATCCATCCATGCCTC+CGG | - | chr5_4:17394787-17394806 | Msa0841270:intron | 55.0% | |
| GAGGCCTCAGCAATACCGTT+TGG | + | chr5_4:17394934-17394953 | None:intergenic | 55.0% | |
| CCATCAGTTTCCATGCTGGC+AGG | + | chr5_4:17395092-17395111 | None:intergenic | 55.0% | |
| CCTGCCAGCATGGAAACTGA+TGG | - | chr5_4:17395089-17395108 | Msa0841270:intron | 55.0% | |
| ACAGCGGGGACATCTGCTAA+TGG | - | chr5_4:17395212-17395231 | Msa0841270:intron | 55.0% | |
| TGGATGCACTACGTCACGCA+AGG | + | chr5_4:17395277-17395296 | None:intergenic | 55.0% | |
| TGTAGGGGTCCTCAGGCATT+AGG | + | chr5_4:17395646-17395665 | None:intergenic | 55.0% | |
| GTAACTGTGTAGGGGTCCTC+AGG | + | chr5_4:17395653-17395672 | None:intergenic | 55.0% | |
| TGGTAGATGGCACCTTTCCG+CGG | + | chr5_4:17396389-17396408 | None:intergenic | 55.0% | |
| GTGCCATCTACCACAGTTGC+AGG | - | chr5_4:17396396-17396415 | Msa0841270:intron | 55.0% | |
| CCTCCTGCAACTGTGGTAGA+TGG | + | chr5_4:17396402-17396421 | None:intergenic | 55.0% | |
| CCATCTACCACAGTTGCAGG+AGG | - | chr5_4:17396399-17396418 | Msa0841270:intron | 55.0% | |
| ! | GGGTGGTTACTGGTGGATCA+CGG | - | chr5_4:17396421-17396440 | Msa0841270:intron | 55.0% |
| ! | GGTGGTTACTGGTGGATCAC+GGG | - | chr5_4:17396422-17396441 | Msa0841270:intron | 55.0% |
| !! | GTTCCAAGGGCGTCGAGTTA+TGG | + | chr5_4:17397098-17397117 | None:intergenic | 55.0% |
| TAACTCGACGCCCTTGGAAC+AGG | - | chr5_4:17397098-17397117 | Msa0841270:intron | 55.0% | |
| AACTCGACGCCCTTGGAACA+GGG | - | chr5_4:17397099-17397118 | Msa0841270:intron | 55.0% | |
| GGGAATCTGCTAGGAGATCC+AGG | - | chr5_4:17397522-17397541 | Msa0841270:intron | 55.0% | |
| GAAAGGGGAGTTACTTCCCC+TGG | - | chr5_4:17397845-17397864 | Msa0841270:five_prime_UTR | 55.0% | |
| GAGAGACTTGGGGAACAACC+AGG | - | chr5_4:17398261-17398280 | Msa0841270:intron | 55.0% | |
| TGGACAGACAGAGGTTGTGC+AGG | - | chr5_4:17398320-17398339 | Msa0841270:intron | 55.0% | |
| GGACAGACAGAGGTTGTGCA+GGG | - | chr5_4:17398321-17398340 | Msa0841270:intron | 55.0% | |
| GGTTGTGCAGGGTGGTCATT+AGG | - | chr5_4:17398332-17398351 | Msa0841270:intron | 55.0% | |
| GGAACTCGTGGGTCGTCGTA+CGG | + | chr5_4:17392076-17392095 | None:intergenic | 60.0% | |
| GACACCGCCACCAACATCAC+AGG | - | chr5_4:17392966-17392985 | Msa0841270:intron | 60.0% | |
| CCTTCGACCACCACAAGCAC+CGG | - | chr5_4:17393080-17393099 | Msa0841270:CDS | 60.0% | |
| AACTGGTCCGGTGCTTGTGG+TGG | + | chr5_4:17393090-17393109 | None:intergenic | 60.0% | |
| ! | TACCGACTGGGCCAGCTTTC+AGG | - | chr5_4:17393112-17393131 | Msa0841270:intron | 60.0% |
| GGGAAACACTCCTGCCAGCA+TGG | - | chr5_4:17395079-17395098 | Msa0841270:intron | 60.0% | |
| ! | GGAGCACCACTTGCCGAGAT+AGG | + | chr5_4:17396282-17396301 | None:intergenic | 60.0% |
| ATCTCGGCAAGTGGTGCTCC+TGG | - | chr5_4:17396282-17396301 | Msa0841270:intron | 60.0% | |
| ! | GGTGCTCCTGGAGCTGTTTC+TGG | - | chr5_4:17396294-17396313 | Msa0841270:intron | 60.0% |
| TCCAACATTCCCGCTCTCCG+CGG | - | chr5_4:17396369-17396388 | Msa0841270:intron | 60.0% | |
| TACCACAGTTGCAGGAGGGG+TGG | - | chr5_4:17396404-17396423 | Msa0841270:intron | 60.0% | |
| AACCACCCCTCCTGCAACTG+TGG | + | chr5_4:17396409-17396428 | None:intergenic | 60.0% | |
| GTTGCAGGAGGGGTGGTTAC+TGG | - | chr5_4:17396411-17396430 | Msa0841270:intron | 60.0% | |
| TGGCGGCGCCATAGACGAAA+TGG | + | chr5_4:17396789-17396808 | None:intergenic | 60.0% | |
| TCCACCATGCCATTCCGCCA+TGG | - | chr5_4:17396850-17396869 | Msa0841270:intron | 60.0% | |
| ! | ACCATGGCGGAATGGCATGG+TGG | + | chr5_4:17396854-17396873 | None:intergenic | 60.0% |
| ! | CACACCATGGCGGAATGGCA+TGG | + | chr5_4:17396857-17396876 | None:intergenic | 60.0% |
| GAGCCATAACTCGACGCCCT+TGG | - | chr5_4:17397092-17397111 | Msa0841270:intron | 60.0% | |
| ACTCGACGCCCTTGGAACAG+GGG | - | chr5_4:17397100-17397119 | Msa0841270:intron | 60.0% | |
| GAGATCCAGGTTGCGCAAGC+AGG | - | chr5_4:17397535-17397554 | Msa0841270:intron | 60.0% | |
| CATCACCTGCTTGCGCAACC+TGG | + | chr5_4:17397543-17397562 | None:intergenic | 60.0% | |
| CAGACAGAGGTTGTGCAGGG+TGG | - | chr5_4:17398324-17398343 | Msa0841270:intron | 60.0% | |
| CTCGTGGGTCGTCGTACGGT+GGG | + | chr5_4:17392072-17392091 | None:intergenic | 65.0% | |
| ACTCGTGGGTCGTCGTACGG+TGG | + | chr5_4:17392073-17392092 | None:intergenic | 65.0% | |
| CCGGTGCTTGTGGTGGTCGA+AGG | + | chr5_4:17393083-17393102 | None:intergenic | 65.0% | |
| TCCGCGGAGAGCGGGAATGT+TGG | + | chr5_4:17396373-17396392 | None:intergenic | 65.0% | |
| CATTCCCGCTCTCCGCGGAA+AGG | - | chr5_4:17396374-17396393 | Msa0841270:intron | 65.0% | |
| TGGCACCTTTCCGCGGAGAG+CGG | + | chr5_4:17396382-17396401 | None:intergenic | 65.0% | |
| GCAGGAGGGGTGGTTACTGG+TGG | - | chr5_4:17396414-17396433 | Msa0841270:intron | 65.0% | |
| ! | GGTGGCACACCATGGCGGAA+TGG | + | chr5_4:17396862-17396881 | None:intergenic | 65.0% |
| GCGGGGCCAGAAACAGCTCC+AGG | + | chr5_4:17396303-17396322 | None:intergenic | 70.0% | |
| GGCACCTTTCCGCGGAGAGC+GGG | + | chr5_4:17396381-17396400 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 17392042 | 17398713 | 17392042 | ID=Msa0841270;Name=Msa0841270 |
| chr5_4 | mRNA | 17392042 | 17398713 | 17392042 | ID=Msa0841270-mRNA-1;Parent=Msa0841270;Name=Msa0841270-mRNA-1;_AED=0.06;_eAED=0.06;_QI=356|0.90|1|1|0.90|0.83|12|360|377 |
| chr5_4 | exon | 17392042 | 17392494 | 17392042 | ID=Msa0841270-mRNA-1:exon:7454;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17392978 | 17393103 | 17392978 | ID=Msa0841270-mRNA-1:exon:7453;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17393199 | 17393276 | 17393199 | ID=Msa0841270-mRNA-1:exon:7452;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17394282 | 17394571 | 17394282 | ID=Msa0841270-mRNA-1:exon:7451;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17394697 | 17394739 | 17394697 | ID=Msa0841270-mRNA-1:exon:7450;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17394892 | 17394949 | 17394892 | ID=Msa0841270-mRNA-1:exon:7449;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17395506 | 17395675 | 17395506 | ID=Msa0841270-mRNA-1:exon:7448;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17395801 | 17395857 | 17395801 | ID=Msa0841270-mRNA-1:exon:7447;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17395947 | 17396036 | 17395947 | ID=Msa0841270-mRNA-1:exon:7446;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17397622 | 17397681 | 17397622 | ID=Msa0841270-mRNA-1:exon:7445;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17397768 | 17397880 | 17397768 | ID=Msa0841270-mRNA-1:exon:7444;Parent=Msa0841270-mRNA-1 |
| chr5_4 | exon | 17398402 | 17398713 | 17398402 | ID=Msa0841270-mRNA-1:exon:7443;Parent=Msa0841270-mRNA-1 |
| chr5_4 | five_prime_UTR | 17398402 | 17398713 | 17398402 | ID=Msa0841270-mRNA-1:five_prime_utr;Parent=Msa0841270-mRNA-1 |
| chr5_4 | five_prime_UTR | 17397837 | 17397880 | 17397837 | ID=Msa0841270-mRNA-1:five_prime_utr;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17397768 | 17397836 | 17397768 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17397622 | 17397681 | 17397622 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17395947 | 17396036 | 17395947 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17395801 | 17395857 | 17395801 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17395506 | 17395675 | 17395506 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17394892 | 17394949 | 17394892 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17394697 | 17394739 | 17394697 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17394282 | 17394571 | 17394282 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17393199 | 17393276 | 17393199 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17392978 | 17393103 | 17392978 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | CDS | 17392402 | 17392494 | 17392402 | ID=Msa0841270-mRNA-1:cds;Parent=Msa0841270-mRNA-1 |
| chr5_4 | three_prime_UTR | 17392042 | 17392401 | 17392042 | ID=Msa0841270-mRNA-1:three_prime_utr;Parent=Msa0841270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
