AlfalfaGEDB | Msa0841330

M. sativa cultivar zhongmu-4 / Msa0841330

KEGG: K11446
GO: GO:0000003 GO:0000785 GO:0000792 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010033 GO:0010228 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032454 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045815 GO:0048366 GO:0048367 GO:0048439 GO:0048518 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841330	XP_003612815.1	90.000	260	5	1	1	239	1	260	8.02e-162	479

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841330	sp\|Q336N8\|JM706_ORYSJ	60.886	271	68	4	5	239	6	274	2.29e-99	310

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841330	G7KCC8	90.000	260	5	1	1	239	1	260	3.83e-162	479

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TFs/TRs:

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Gene ID	Type	Classification
Msa0841330	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841330	MtrunA17_Chr5g0410721	90.000	260	5	1	1	239	1	260	7.37e-166	479
Msa0841330	MtrunA17_Chr1g0164731	53.403	191	68	1	70	239	26	216	5.84e-62	203
Msa0841330	MtrunA17_Chr1g0164761	48.193	166	59	3	83	224	2	164	1.52e-40	146
Msa0841330	MtrunA17_Chr3g0116441	33.684	190	93	6	82	239	11	199	2.39e-22	95.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841330	AT5G46910.2	61.852	270	67	4	6	239	5	274	1.49e-106	321
Msa0841330	AT5G46910.1	61.852	270	67	4	6	239	5	274	2.30e-105	322
Msa0841330	AT3G48430.1	27.854	219	93	8	82	239	13	227	5.66e-12	65.5
Msa0841330	AT1G63490.2	47.761	67	31	1	86	152	28	90	4.66e-11	62.8
Msa0841330	AT1G63490.4	47.761	67	31	1	86	152	28	90	4.83e-11	62.8

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Find 230 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGGTATGGTATCCC+TGG	0.538981	5_4:+17483994	Msa0841330:three_prime_UTR
AAAATCCAAGTGATTGATTC+AGG	0.316304	5_4:+17487008	Msa0841330:three_prime_UTR
AAAATTCTAGGTTTCAACTG+TGG	0.612221	5_4:+17484345	Msa0841330:intron
AAACTAGGAAGTTTAGAAAT+TGG	0.210205	5_4:+17487185	Msa0841330:three_prime_UTR
AAATCTCTTGACCTCATCTG+TGG	0.564286	5_4:+17485561	Msa0841330:three_prime_UTR
AACAGATTTGCAAGGGGAAA+TGG	0.376372	5_4:+17486608	Msa0841330:three_prime_UTR
AACAGTGATGAGGAGAGAGA+AGG	0.533626	5_4:-17480330	None:intergenic
AACATCTTACAGGTAGAAGG+AGG	0.700370	5_4:+17481868	Msa0841330:intron
AACATTTGGGCAGTCTGCAC+GGG	0.492932	5_4:+17487094	Msa0841330:three_prime_UTR
AACCATGACTGAAGCCTGAA+TGG	0.484344	5_4:-17484224	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCCGATGAGAAAAGAAAA+CGG	-	chr5_4:17480361-17480380	None:intergenic	30.0%
ATTTCAACATTTACCAGCTA+TGG	-	chr5_4:17481449-17481468	None:intergenic	30.0%
TAGCTGGTAAATGTTGAAAT+TGG	+	chr5_4:17481449-17481468	Msa0841330:intron	30.0%
AGTCAATAACTTGATGTTCA+GGG	-	chr5_4:17481492-17481511	None:intergenic	30.0%
AAAGGATGCAATTCAACAAA+AGG	-	chr5_4:17481564-17481583	None:intergenic	30.0%
GTAAGATGTTTCACATTTCA+CGG	-	chr5_4:17481858-17481877	None:intergenic	30.0%
TGAAATGTGAAACATCTTAC+AGG	+	chr5_4:17481858-17481877	Msa0841330:intron	30.0%
TAAGTTTGATACAAGCGATT+TGG	+	chr5_4:17482095-17482114	Msa0841330:CDS	30.0%
ATCTTCTGCAAATAAACCAA+AGG	-	chr5_4:17482183-17482202	None:intergenic	30.0%
ATACCATATTTAGAAGCTTC+TGG	-	chr5_4:17482210-17482229	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	17480296	17487391	17480296	ID=Msa0841330;Name=Msa0841330
chr5_4	mRNA	17480296	17487391	17480296	ID=Msa0841330-mRNA-1;Parent=Msa0841330;Name=Msa0841330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=434\|0.81\|0.91\|1\|0.72\|0.58\|12\|2131\|240
chr5_4	exon	17480296	17480732	17480296	ID=Msa0841330-mRNA-1:exon:7431;Parent=Msa0841330-mRNA-1
chr5_4	exon	17481880	17482225	17481880	ID=Msa0841330-mRNA-1:exon:7432;Parent=Msa0841330-mRNA-1
chr5_4	exon	17483021	17483177	17483021	ID=Msa0841330-mRNA-1:exon:7433;Parent=Msa0841330-mRNA-1
chr5_4	exon	17483322	17483478	17483322	ID=Msa0841330-mRNA-1:exon:7434;Parent=Msa0841330-mRNA-1
chr5_4	exon	17483638	17483691	17483638	ID=Msa0841330-mRNA-1:exon:7435;Parent=Msa0841330-mRNA-1
chr5_4	exon	17483966	17484243	17483966	ID=Msa0841330-mRNA-1:exon:7436;Parent=Msa0841330-mRNA-1
chr5_4	exon	17484355	17484750	17484355	ID=Msa0841330-mRNA-1:exon:7437;Parent=Msa0841330-mRNA-1
chr5_4	exon	17485556	17485813	17485556	ID=Msa0841330-mRNA-1:exon:7438;Parent=Msa0841330-mRNA-1
chr5_4	exon	17485835	17485974	17485835	ID=Msa0841330-mRNA-1:exon:7439;Parent=Msa0841330-mRNA-1
chr5_4	exon	17486092	17486340	17486092	ID=Msa0841330-mRNA-1:exon:7440;Parent=Msa0841330-mRNA-1
chr5_4	exon	17486476	17486867	17486476	ID=Msa0841330-mRNA-1:exon:7441;Parent=Msa0841330-mRNA-1
chr5_4	exon	17486968	17487391	17486968	ID=Msa0841330-mRNA-1:exon:7442;Parent=Msa0841330-mRNA-1
chr5_4	five_prime_UTR	17480296	17480729	17480296	ID=Msa0841330-mRNA-1:five_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4	CDS	17480730	17480732	17480730	ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4	CDS	17481880	17482225	17481880	ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4	CDS	17483021	17483177	17483021	ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4	CDS	17483322	17483478	17483322	ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4	CDS	17483638	17483691	17483638	ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4	CDS	17483966	17483971	17483966	ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4	three_prime_UTR	17483972	17484243	17483972	ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4	three_prime_UTR	17484355	17484750	17484355	ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4	three_prime_UTR	17485556	17485813	17485556	ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4	three_prime_UTR	17485835	17485974	17485835	ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4	three_prime_UTR	17486092	17486340	17486092	ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4	three_prime_UTR	17486476	17486867	17486476	ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4	three_prime_UTR	17486968	17487391	17486968	ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1

Gene Sequence

>Msa0841330

ATGGTAGAAGGAGGTAGAGTACGACGATCTGAGGAGGCTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAAGCCATTGCTGCCACTCAGACAAGTGCTGCCAACTTGATGAATAGAAGTGGAGGAGATGCTTTGAGAGGTTCACCTTCTTGTGGCACGAGATTGCATGGTAATCCAGATGTGTTTTTCAAGCGGAAGGTGGATAAGTTTGATACAAGCGATTTGGATTGGACTGATAAAATTCCAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAAGATCCTTTGGTTTATTTGCAGAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTGTTTCGCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAGGAGCAACCTGGATTCAAGTTTACAACCAGAGTGCAGCCTCTCCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGCGCTGGATGTCTTCCTGCCACTTACTTGGAAAAGGAATTTTGGCAGGAAATTGGTCGTGGGAAAATGGATACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCAACTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCCCGGTTGCCCAAATCAACTTTGCGTCTATTGGAAACATCAATTCCGCATTAA

Protein sequence

>Msa0841330

MVEGGRVRRSEEARNGLEFLKRKRLQRAQAIAATQTSAANLMNRSGGDALRGSPSCGTRLHGNPDVFFKRKVDKFDTSDLDWTDKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEQPGFKFTTRVQPLRLAEWDTEDKVTFFMSGSAGCLPATYLEKEFWQEIGRGKMDTVEYACDVDGSAFSTSPTDQLGNSKWNLKKLSRLPKSTLRLLETSIPH*