AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0841330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841330 MtrunA17_Chr5g0410721 90.000 260 5 1 1 239 1 260 7.37e-166 479
Msa0841330 MtrunA17_Chr1g0164731 53.403 191 68 1 70 239 26 216 5.84e-62 203
Msa0841330 MtrunA17_Chr1g0164761 48.193 166 59 3 83 224 2 164 1.52e-40 146
Msa0841330 MtrunA17_Chr3g0116441 33.684 190 93 6 82 239 11 199 2.39e-22 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841330 AT5G46910.2 61.852 270 67 4 6 239 5 274 1.49e-106 321
Msa0841330 AT5G46910.1 61.852 270 67 4 6 239 5 274 2.30e-105 322
Msa0841330 AT3G48430.1 27.854 219 93 8 82 239 13 227 5.66e-12 65.5
Msa0841330 AT1G63490.2 47.761 67 31 1 86 152 28 90 4.66e-11 62.8
Msa0841330 AT1G63490.4 47.761 67 31 1 86 152 28 90 4.83e-11 62.8

Find 230 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATAGACAGGGACTTTA+TGG 0.160704 5_4:-17484155 None:intergenic
ATTCTGATTCAGGAATATTT+AGG 0.200884 5_4:+17486243 Msa0841330:three_prime_UTR
CAAATCAACTTTGCGTCTAT+TGG 0.207894 5_4:+17483655 Msa0841330:CDS
AAACTAGGAAGTTTAGAAAT+TGG 0.210205 5_4:+17487185 Msa0841330:three_prime_UTR
CTTACTTGGAAAAGGAATTT+TGG 0.236797 5_4:+17483342 Msa0841330:CDS
AATGCTTAGAAAATGTAAAA+AGG 0.245313 5_4:-17480297 None:intergenic
AAGGATATGAATACATATTT+TGG 0.248625 5_4:-17485698 None:intergenic
ATATCAACTTTATGATTAAC+AGG 0.250912 5_4:-17486569 None:intergenic
TTATGGTCCATCAAAATATT+AGG 0.259778 5_4:-17484138 None:intergenic
ATGTAAATTCATATCCTAAT+TGG 0.263183 5_4:-17487051 None:intergenic
TACACAGAATCAATTTGTTT+TGG 0.264444 5_4:+17485842 Msa0841330:three_prime_UTR
CAATAGACGCAAAGTTGATT+TGG 0.270851 5_4:-17483654 None:intergenic
CTTGGTGATTGGTTTCCTCT+TGG 0.276385 5_4:+17484387 Msa0841330:three_prime_UTR
TTGGTGATTGGTTTCCTCTT+GGG 0.277791 5_4:+17484388 Msa0841330:three_prime_UTR
GGAGATATGCACTTCTTAAC+AGG 0.290366 5_4:+17484424 Msa0841330:three_prime_UTR
GCTCCAGAAGCTTCTAAATA+TGG 0.300151 5_4:+17482204 Msa0841330:CDS
CCTTGCAAATCTGTTCTTCA+AGG 0.301570 5_4:-17486600 None:intergenic
GGAAATTGGTCGTGGGAAAA+TGG 0.302113 5_4:+17483367 Msa0841330:CDS
GAAAAGAAATCTGAAGATTA+TGG 0.302496 5_4:+17486295 Msa0841330:three_prime_UTR
GACAGTGATGATTCTGATTC+AGG 0.305131 5_4:+17486233 Msa0841330:three_prime_UTR
CCATAAAGTCCCTGTCTATA+AGG 0.310054 5_4:+17484155 Msa0841330:three_prime_UTR
ATCACTGTCGTTATCCACTA+TGG 0.310190 5_4:-17486219 None:intergenic
TGCAGGCAAGCCCTAACATT+TGG 0.310320 5_4:+17487080 Msa0841330:three_prime_UTR
TTCCCTAGAGCGTACCATTC+AGG 0.312952 5_4:+17484210 Msa0841330:three_prime_UTR
AAAATCCAAGTGATTGATTC+AGG 0.316304 5_4:+17487008 Msa0841330:three_prime_UTR
AACGTTCAGGATCGTGATTT+AGG 0.318189 5_4:+17480614 Msa0841330:five_prime_UTR
GTGCAGACTGCCCAAATGTT+AGG 0.320819 5_4:-17487091 None:intergenic
TAAGTTTGATACAAGCGATT+TGG 0.321047 5_4:+17482095 Msa0841330:CDS
ACGTTCAGGATCGTGATTTA+GGG 0.322501 5_4:+17480615 Msa0841330:five_prime_UTR
TTCTGATTCAGGAATATTTA+GGG 0.330786 5_4:+17486244 Msa0841330:three_prime_UTR
GCCTCTCCGCCTTGCTGAAT+GGG 0.334178 5_4:+17483118 Msa0841330:CDS
CCGCAAGGTATTAACCAATT+AGG 0.335787 5_4:+17487037 Msa0841330:three_prime_UTR
ACGTCAGACACTTCTGGTTT+AGG 0.338162 5_4:-17485882 None:intergenic
TTTACATTCATCCGTTGTTT+AGG 0.344173 5_4:+17487239 Msa0841330:three_prime_UTR
GAGAGAGGATATTACGGATA+TGG 0.346339 5_4:+17485605 Msa0841330:three_prime_UTR
CCTTGGACTTTGAGTCGCTT+TGG 0.347280 5_4:-17486758 None:intergenic
CTTTGCAAAGAAGTTCTTCA+TGG 0.354153 5_4:-17484461 None:intergenic
AGCCTCTCCGCCTTGCTGAA+TGG 0.359090 5_4:+17483117 Msa0841330:CDS
TCCACTATGGGCTTGATGTC+AGG 0.360622 5_4:-17486206 None:intergenic
ATACCATATTTAGAAGCTTC+TGG 0.364051 5_4:-17482207 None:intergenic
TTGAGTGCTTCTGTACCTGC+TGG 0.368641 5_4:+17483044 Msa0841330:CDS
GGAGAATACACAGGACATTC+TGG 0.368911 5_4:-17482135 None:intergenic
TATTATTTCAGAAACTTTCC+CGG 0.371589 5_4:+17483627 Msa0841330:intron
AAGGAAACGTCAGACACTTC+TGG 0.371873 5_4:-17485888 None:intergenic
AACAGATTTGCAAGGGGAAA+TGG 0.376372 5_4:+17486608 Msa0841330:three_prime_UTR
AATAGACGCAAAGTTGATTT+GGG 0.377922 5_4:-17483653 None:intergenic
TGGAGCCTTTGATGTTCTCT+TGG 0.379655 5_4:+17484095 Msa0841330:three_prime_UTR
GGAGGAATTTGAAGATCCTT+TGG 0.383247 5_4:+17482164 Msa0841330:CDS
CGCCGTATCACCCTCGTATA+CGG 0.387467 5_4:+17480535 Msa0841330:five_prime_UTR
TCCGTTGTTTAGGTCTTGTT+AGG 0.387513 5_4:+17487249 Msa0841330:three_prime_UTR
TGAGCAGGAAGATGGGATAT+TGG 0.390426 5_4:+17485647 Msa0841330:three_prime_UTR
TCTTCAAATTCCTCCTTTGT+TGG 0.392588 5_4:-17482156 None:intergenic
GCAGGCAAGCCCTAACATTT+GGG 0.398960 5_4:+17487081 Msa0841330:three_prime_UTR
CGATCTGAGGAGGCTAGAAA+TGG 0.399541 5_4:+17481901 Msa0841330:CDS
ATGTCTTCCTGCCACTTACT+TGG 0.401021 5_4:+17483328 Msa0841330:CDS
GAATCGCCTTCCATTGAGAT+TGG 0.401048 5_4:+17486734 Msa0841330:three_prime_UTR
AAGTTTAGAAATTGGATTAG+TGG 0.403358 5_4:+17487193 Msa0841330:three_prime_UTR
ATATTTATCACTTGATTCAC+TGG 0.418019 5_4:-17486543 None:intergenic
CGTTCTAATCTACAACGTTC+AGG 0.421253 5_4:+17480601 Msa0841330:five_prime_UTR
TATCCCTGGTCACGCAGCTT+TGG 0.422015 5_4:+17484008 Msa0841330:three_prime_UTR
TTCTCTGCTTTAAGAGAAGA+AGG 0.428070 5_4:-17486275 None:intergenic
TGAATTTACATTCTTTGTGC+AGG 0.428309 5_4:+17487063 Msa0841330:three_prime_UTR
GCAAAGTTGATTTGGGCAAC+CGG 0.428436 5_4:-17483646 None:intergenic
TTCAAAACATTCTGAGCAGC+AGG 0.432668 5_4:+17486319 Msa0841330:three_prime_UTR
TTCCTTCTAGCTTACGAAAA+CGG 0.437884 5_4:+17480678 Msa0841330:five_prime_UTR
ATCAGCTTGGGAACAGCAAA+TGG 0.440002 5_4:+17483447 Msa0841330:CDS
TTATCTGAGAGAGGATATTA+CGG 0.445667 5_4:+17485599 Msa0841330:three_prime_UTR
CTGCACGGGTGGTGATCCTT+AGG 0.446893 5_4:+17487108 Msa0841330:three_prime_UTR
GATCCTTAGGTTCTCTGGCC+GGG 0.447005 5_4:+17487121 Msa0841330:three_prime_UTR
GGAGCCTTTGATGTTCTCTT+GGG 0.449239 5_4:+17484096 Msa0841330:three_prime_UTR
TGGTGATTGGTTTCCTCTTG+GGG 0.449362 5_4:+17484389 Msa0841330:three_prime_UTR
GTGGTGATCCTTAGGTTCTC+TGG 0.449882 5_4:+17487116 Msa0841330:three_prime_UTR
TGAAACATCTTACAGGTAGA+AGG 0.451605 5_4:+17481865 Msa0841330:intron
TTGTCAAGTGATGGAGAAGA+TGG 0.453056 5_4:+17484075 Msa0841330:three_prime_UTR
TCTATTGGAAACATCAATTC+CGG 0.453665 5_4:+17483670 Msa0841330:CDS
TTGATACAAGCGATTTGGAT+TGG 0.454805 5_4:+17482100 Msa0841330:CDS
TGAGTGCTTCTGTACCTGCT+GGG 0.455362 5_4:+17483045 Msa0841330:CDS
AATTCCAAAGCTGCGTGACC+AGG 0.455551 5_4:-17484012 None:intergenic
AAGAGTGGATGCAGCAGAAA+AGG 0.456673 5_4:-17485907 None:intergenic
CGCAGCTTTGGAATTTGAAA+GGG 0.456897 5_4:+17484020 Msa0841330:three_prime_UTR
TTTAGGTCTTGTTAGGAACA+TGG 0.460465 5_4:+17487256 Msa0841330:three_prime_UTR
GTTGGTTACTAATGAAATCA+AGG 0.462719 5_4:+17484607 Msa0841330:three_prime_UTR
AAGCCTGAATGGTACGCTCT+AGG 0.463569 5_4:-17484213 None:intergenic
CCTGACCGACCTGCAAAACT+AGG 0.471809 5_4:+17487170 Msa0841330:three_prime_UTR
TGATCCTTAGGTTCTCTGGC+CGG 0.473701 5_4:+17487120 Msa0841330:three_prime_UTR
CTCTTGGGGCTATTGCAAGC+AGG 0.475256 5_4:+17484403 Msa0841330:three_prime_UTR
GTTTCCAGCATTGTGCTAGT+TGG 0.477992 5_4:+17484589 Msa0841330:three_prime_UTR
TCCTGCCACTTACTTGGAAA+AGG 0.478765 5_4:+17483334 Msa0841330:CDS
AAGATGTTTGAGCAGGAAGA+TGG 0.480595 5_4:+17485639 Msa0841330:three_prime_UTR
CACTGCATTCTTTAGGCTGA+GGG 0.481254 5_4:+17486077 Msa0841330:intron
TATAAGGCTGTTCAAAAGCC+AGG 0.481451 5_4:+17484171 Msa0841330:three_prime_UTR
TTTGCTGCAACCTCTCTCTT+CGG 0.483361 5_4:-17486703 None:intergenic
TGCAGACTGCCCAAATGTTA+GGG 0.484313 5_4:-17487090 None:intergenic
AACCATGACTGAAGCCTGAA+TGG 0.484344 5_4:-17484224 None:intergenic
TTACGAAAACGGAGACCGTA+GGG 0.485873 5_4:+17480689 Msa0841330:five_prime_UTR
AATCGCCTTCCATTGAGATT+GGG 0.487445 5_4:+17486735 Msa0841330:three_prime_UTR
AGTTCTTCATGGGGCAGTAA+AGG 0.488348 5_4:-17484450 None:intergenic
AGAAGATTCGCATGCACTGT+TGG 0.490711 5_4:-17486129 None:intergenic
GGAACGAGTTCGTAATGAAA+TGG 0.491134 5_4:+17480711 Msa0841330:exon
AGCCTGAATGGTACGCTCTA+GGG 0.492261 5_4:-17484212 None:intergenic
AACATTTGGGCAGTCTGCAC+GGG 0.492932 5_4:+17487094 Msa0841330:three_prime_UTR
TCCTGTGTATTCTCCAACAA+AGG 0.493715 5_4:+17482143 Msa0841330:CDS
TCTATATTCCGCGCCACCGT+AGG 0.494800 5_4:+17480424 Msa0841330:five_prime_UTR
TTTCAGAGAGCTGAAGCAAA+TGG 0.495918 5_4:+17485732 Msa0841330:three_prime_UTR
TGCAGCAAAGATGTTTGAGC+AGG 0.497284 5_4:+17485632 Msa0841330:three_prime_UTR
TAACATTTGGGCAGTCTGCA+CGG 0.498668 5_4:+17487093 Msa0841330:three_prime_UTR
GAACAGCAAATGGAATTTGA+AGG 0.498848 5_4:+17483457 Msa0841330:CDS
ACGCAGCTTTGGAATTTGAA+AGG 0.502422 5_4:+17484019 Msa0841330:three_prime_UTR
TTGAGAGGTTCACCTTCTTG+TGG 0.502769 5_4:+17482024 Msa0841330:CDS
TTCATTAAAACAACCCCAGC+AGG 0.503191 5_4:-17483059 None:intergenic
GTAACCAACTAGCACAATGC+TGG 0.505912 5_4:-17484593 None:intergenic
ATTACGAACTCGTTCCCCTA+CGG 0.509593 5_4:-17480704 None:intergenic
TTTGCAAAGAAGTTCTTCAT+GGG 0.510875 5_4:-17484460 None:intergenic
CGCCGTGTAGGAGCAACCAC+GGG 0.511705 5_4:-17480496 None:intergenic
TTCAATCGGAGCACCGTGAC+CGG 0.513456 5_4:-17480450 None:intergenic
TCCACTTCTATTCATCAAGT+TGG 0.513833 5_4:-17481992 None:intergenic
ACGAGGGTGATACGGCGTTA+CGG 0.516144 5_4:-17480529 None:intergenic
GAATATGCATGTGATGTTGA+TGG 0.516379 5_4:+17483398 Msa0841330:CDS
CTCGAACGACGCCGTATACG+AGG 0.519765 5_4:-17480546 None:intergenic
TCAGGTTCACCCAGCGAAGT+AGG 0.521169 5_4:-17487152 None:intergenic
TTTCCGATGAGAAAAGAAAA+CGG 0.521695 5_4:-17480358 None:intergenic
ATCAGTAGGAGAAGTTGAAA+AGG 0.523872 5_4:-17483426 None:intergenic
CAAAGTTGATTTGGGCAACC+GGG 0.524308 5_4:-17483645 None:intergenic
ATGAATTAACATCGAAAGGA+GGG 0.525231 5_4:-17487351 None:intergenic
TGCTTCCTGAATCAATCACT+TGG 0.528088 5_4:-17487013 None:intergenic
GATGCTTATTCATTCAAGCT+TGG 0.528112 5_4:+17484488 Msa0841330:three_prime_UTR
TCGCTTTGGCCCAATCTCAA+TGG 0.528894 5_4:-17486744 None:intergenic
TTAGGTCTTGTTAGGAACAT+GGG 0.529346 5_4:+17487257 Msa0841330:three_prime_UTR
CTTGAAGAACAGATTTGCAA+GGG 0.530129 5_4:+17486601 Msa0841330:three_prime_UTR
TCCGCGCCACCGTAGGAAGC+CGG 0.531762 5_4:+17480431 Msa0841330:five_prime_UTR
CACCCCGGCCAGAGAACCTA+AGG 0.533451 5_4:-17487124 None:intergenic
AACAGTGATGAGGAGAGAGA+AGG 0.533626 5_4:-17480330 None:intergenic
CGCCGTATACGAGGGTGATA+CGG 0.535454 5_4:-17480537 None:intergenic
CTGGTTGTAAACTTGAATCC+AGG 0.537765 5_4:-17483089 None:intergenic
AAAACTTGGTATGGTATCCC+TGG 0.538981 5_4:+17483994 Msa0841330:three_prime_UTR
GAGCTTTCATGATACAAAGC+AGG 0.540211 5_4:-17486158 None:intergenic
AAGAATGAATTAACATCGAA+AGG 0.540352 5_4:-17487355 None:intergenic
TACCATTCAGGCTTCAGTCA+TGG 0.541112 5_4:+17484222 Msa0841330:three_prime_UTR
CCTTGAAGAACAGATTTGCA+AGG 0.541170 5_4:+17486600 Msa0841330:three_prime_UTR
CCACCGTAGGAAGCCGGTCA+CGG 0.541191 5_4:+17480437 Msa0841330:five_prime_UTR
CTTCTCCTACTGATCAGCTT+GGG 0.543251 5_4:+17483435 Msa0841330:CDS
ACCTGACATCAAGCCCATAG+TGG 0.543321 5_4:+17486205 Msa0841330:three_prime_UTR
AGCTTTGGAATTTGAAAGGG+TGG 0.546161 5_4:+17484023 Msa0841330:three_prime_UTR
ACTTGTCTGAGTGGCAGCAA+TGG 0.548160 5_4:-17481965 None:intergenic
ACTTCTCCTACTGATCAGCT+TGG 0.549870 5_4:+17483434 Msa0841330:CDS
TGGTTGCTCCTACACGGCGT+TGG 0.550785 5_4:+17480500 Msa0841330:five_prime_UTR
GCACCGTGACCGGCTTCCTA+CGG 0.551256 5_4:-17480440 None:intergenic
TACGGCGTCGTTCGAGAATG+TGG 0.553892 5_4:+17480553 Msa0841330:five_prime_UTR
TTACCATGGCGTAAGCATAC+AGG 0.555597 5_4:-17484732 None:intergenic
TCACTGTCGTTATCCACTAT+GGG 0.556082 5_4:-17486218 None:intergenic
GAGGGGCATTGTGAAGAACT+TGG 0.556419 5_4:+17486095 Msa0841330:three_prime_UTR
AGTGTTTCTTCTCATTCGCA+TGG 0.557562 5_4:+17484639 Msa0841330:three_prime_UTR
AAGGCGGAGAGGCTGCACTC+TGG 0.558918 5_4:-17483108 None:intergenic
TCTTGTGGCACGAGATTGCA+TGG 0.561186 5_4:+17482039 Msa0841330:CDS
TGCAATCTCGTGCCACAAGA+AGG 0.561867 5_4:-17482036 None:intergenic
AGATGTTTGAGCAGGAAGAT+GGG 0.562717 5_4:+17485640 Msa0841330:three_prime_UTR
TCCCCGTGGTTGCTCCTACA+CGG 0.563442 5_4:+17480494 Msa0841330:five_prime_UTR
CATAACAGTCACGTTTGCAC+AGG 0.563814 5_4:-17484677 None:intergenic
AAATCTCTTGACCTCATCTG+TGG 0.564286 5_4:+17485561 Msa0841330:three_prime_UTR
ACCGGCTTCCTACGGTGGCG+CGG 0.566689 5_4:-17480432 None:intergenic
CTGTTCCCAAGCTGATCAGT+AGG 0.569260 5_4:-17483440 None:intergenic
TGGTCCATCAAAATATTAGG+TGG 0.570687 5_4:-17484135 None:intergenic
ATAAGGCTGTTCAAAAGCCA+GGG 0.571901 5_4:+17484172 Msa0841330:three_prime_UTR
GTGAATGCGAGTGTTTCAAT+CGG 0.574298 5_4:-17480464 None:intergenic
ATCCTTAGGTTCTCTGGCCG+GGG 0.576299 5_4:+17487122 Msa0841330:three_prime_UTR
AGGTAGAGTACGACGATCTG+AGG 0.576492 5_4:+17481888 Msa0841330:CDS
AAGGTTATTACAAACTCCCC+TGG 0.576603 5_4:-17484189 None:intergenic
ATGAGATAACAAGTCTGAAG+AGG 0.577900 5_4:-17484532 None:intergenic
CTTACGAAAACGGAGACCGT+AGG 0.578312 5_4:+17480688 Msa0841330:five_prime_UTR
AATGAATTAACATCGAAAGG+AGG 0.582016 5_4:-17487352 None:intergenic
CCAAAGCGACTCAAAGTCCA+AGG 0.583920 5_4:+17486758 Msa0841330:three_prime_UTR
TTGGTTACTAATGAAATCAA+GGG 0.584367 5_4:+17484608 Msa0841330:three_prime_UTR
GATCTGAGGAGGCTAGAAAT+GGG 0.585570 5_4:+17481902 Msa0841330:CDS
TTCTGAAAGAGAACAAAGAG+TGG 0.588446 5_4:-17485922 None:intergenic
CCTAATTGGTTAATACCTTG+CGG 0.593811 5_4:-17487037 None:intergenic
GCTGCAACCTCTCTCTTCGG+TGG 0.594530 5_4:-17486700 None:intergenic
TGAATTAACATCGAAAGGAG+GGG 0.596572 5_4:-17487350 None:intergenic
TTTGGCAGGAAATTGGTCGT+GGG 0.598166 5_4:+17483360 Msa0841330:CDS
AGCTTTCATGATACAAAGCA+GGG 0.600014 5_4:-17486157 None:intergenic
TGAGATAACAAGTCTGAAGA+GGG 0.601071 5_4:-17484531 None:intergenic
GAGTGCTTCTGTACCTGCTG+GGG 0.605225 5_4:+17483046 Msa0841330:CDS
TTGAAGAAAGTCCTTCCTGA+AGG 0.607024 5_4:+17486488 Msa0841330:three_prime_UTR
TTTGGCCCAATCTCAATGGA+AGG 0.607949 5_4:-17486740 None:intergenic
ATCTTCTGCAAATAAACCAA+AGG 0.609064 5_4:-17482180 None:intergenic
TCCTTTGTTGGAGAATACAC+AGG 0.609723 5_4:-17482144 None:intergenic
CTCTGAAACATATCTGACAA+AGG 0.609736 5_4:-17485717 None:intergenic
AAAATTCTAGGTTTCAACTG+TGG 0.612221 5_4:+17484345 Msa0841330:intron
ATTCCAAAGCTGCGTGACCA+GGG 0.613347 5_4:-17484011 None:intergenic
GGAGAGATCCAACGCCGTGT+AGG 0.614024 5_4:-17480508 None:intergenic
GTTGGCAGCACTTGTCTGAG+TGG 0.614074 5_4:-17481974 None:intergenic
ATTTGGGCAGTCTGCACGGG+TGG 0.619415 5_4:+17487097 Msa0841330:three_prime_UTR
AGTGGAGGAGATGCTTTGAG+AGG 0.620104 5_4:+17482009 Msa0841330:CDS
AACTTGATGAATAGAAGTGG+AGG 0.620306 5_4:+17481994 Msa0841330:CDS
GAATTAACATCGAAAGGAGG+GGG 0.621459 5_4:-17487349 None:intergenic
AATCTCTTGACCTCATCTGT+GGG 0.626666 5_4:+17485562 Msa0841330:three_prime_UTR
CCGTGACCGGCTTCCTACGG+TGG 0.629502 5_4:-17480437 None:intergenic
GCCAACTTGATGAATAGAAG+TGG 0.630606 5_4:+17481991 Msa0841330:CDS
TCTCTGCTTTAAGAGAAGAA+GGG 0.631402 5_4:-17486274 None:intergenic
GCAGGTACAGAAGCACTCAA+AGG 0.631676 5_4:-17483041 None:intergenic
TGTGTTTGCTCCCACAGATG+AGG 0.633446 5_4:-17485572 None:intergenic
ACACACTCTTTATCTGAGAG+AGG 0.633663 5_4:+17485590 Msa0841330:three_prime_UTR
TGTGTATTCTCCAACAAAGG+AGG 0.634871 5_4:+17482146 Msa0841330:CDS
CTTCAGTATCCCATTCAGCA+AGG 0.636604 5_4:-17483127 None:intergenic
TCCCATTCAGCAAGGCGGAG+AGG 0.639564 5_4:-17483119 None:intergenic
TTGAAGAACAGATTTGCAAG+GGG 0.640429 5_4:+17486602 Msa0841330:three_prime_UTR
TTTGAACAGCCTTATAGACA+GGG 0.640431 5_4:-17484164 None:intergenic
ACGCCGTGTAGGAGCAACCA+CGG 0.642188 5_4:-17480497 None:intergenic
TGATTCAGGAAGCAGCCGCA+AGG 0.646370 5_4:+17487022 Msa0841330:three_prime_UTR
GGAGCAGAGGAACAGTCATG+AGG 0.652702 5_4:-17485945 None:intergenic
AACGGAGAGAAACAGTGATG+AGG 0.653517 5_4:-17480340 None:intergenic
CATCCTGTATGCTTACGCCA+TGG 0.654178 5_4:+17484729 Msa0841330:three_prime_UTR
AAGATCACCACCGAAGAGAG+AGG 0.658877 5_4:+17486693 Msa0841330:three_prime_UTR
TAGAGTACGACGATCTGAGG+AGG 0.659793 5_4:+17481891 Msa0841330:CDS
TGAATGGTACGCTCTAGGGA+AGG 0.659979 5_4:-17484208 None:intergenic
GAGATATGCACTTCTTAACA+GGG 0.660720 5_4:+17484425 Msa0841330:three_prime_UTR
CTGCTTGCAATAGCCCCAAG+AGG 0.661556 5_4:-17484402 None:intergenic
TTGCAAAGAAGTTCTTCATG+GGG 0.664478 5_4:-17484459 None:intergenic
TATCAACTTTATGATTAACA+GGG 0.667769 5_4:-17486568 None:intergenic
TACGAAAACGGAGACCGTAG+GGG 0.667863 5_4:+17480690 Msa0841330:five_prime_UTR
CATTCACTCTCAATTCCCCG+TGG 0.670322 5_4:+17480480 Msa0841330:five_prime_UTR
TCGAACGACGCCGTATACGA+GGG 0.672154 5_4:-17480545 None:intergenic
TCCTAACAAGACCTAAACAA+CGG 0.678244 5_4:-17487250 None:intergenic
AACATCTTACAGGTAGAAGG+AGG 0.700370 5_4:+17481868 Msa0841330:intron
ACTGCATTCTTTAGGCTGAG+GGG 0.702141 5_4:+17486078 Msa0841330:intron
CAGTATCCCATTCAGCAAGG+CGG 0.708241 5_4:-17483124 None:intergenic
TAAGGCTGTTCAAAAGCCAG+GGG 0.708748 5_4:+17484173 Msa0841330:three_prime_UTR
CGTAGCGTTGTAAGACAACG+AGG 0.737042 5_4:-17480580 None:intergenic
GCTTTCATGATACAAAGCAG+GGG 0.738700 5_4:-17486156 None:intergenic
AGCATTAACTATCAGCACTG+CGG 0.747153 5_4:+17483964 Msa0841330:intron
GCCGTGTAGGAGCAACCACG+GGG 0.755712 5_4:-17480495 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTGATAATATTATTTATA+TGG + chr5_4:17483934-17483953 Msa0841330:intron 10.0%
!! TAATATTATTTATATGGTAA+TGG + chr5_4:17483940-17483959 Msa0841330:intron 10.0%
!!! ATGAATTTTAATTATATTTG+AGG + chr5_4:17485032-17485051 Msa0841330:intron 10.0%
!! AAGAAAAAAAAAAAAAACAA+TGG - chr5_4:17487288-17487307 None:intergenic 10.0%
!! ATTGCAATTAAGAAATAAAT+TGG + chr5_4:17481086-17481105 Msa0841330:intron 15.0%
!! AAATTGGAATTAAGAAATTT+AGG + chr5_4:17481102-17481121 Msa0841330:intron 15.0%
!! AAATTCAAATGAAAAAAGTT+CGG - chr5_4:17482987-17483006 None:intergenic 15.0%
!! AATATGATAAATAAATAACG+GGG - chr5_4:17483530-17483549 None:intergenic 15.0%
!! CAATATGATAAATAAATAAC+GGG - chr5_4:17483531-17483550 None:intergenic 15.0%
!! CCAATATGATAAATAAATAA+CGG - chr5_4:17483532-17483551 None:intergenic 15.0%
!! AAAACAATCATGTATATTAT+TGG + chr5_4:17484854-17484873 Msa0841330:intron 15.0%
!!! CAAAAATTATTAGTTTTCAT+AGG - chr5_4:17485187-17485206 None:intergenic 15.0%
!! AAAAAAAAAAAAACAATGGA+TGG - chr5_4:17487284-17487303 None:intergenic 15.0%
!! ATGCTTAGAAAATGTAAAAA+GGG - chr5_4:17480299-17480318 None:intergenic 20.0%
!! AATGCTTAGAAAATGTAAAA+AGG - chr5_4:17480300-17480319 None:intergenic 20.0%
!! ATAGAAGAAAAAAGAGAAAA+CGG - chr5_4:17480409-17480428 None:intergenic 20.0%
!!! AACATTGTTATACTTTTCTA+TGG + chr5_4:17480855-17480874 Msa0841330:intron 20.0%
!!! CGATTTATCTCAATTTTTTT+TGG + chr5_4:17480886-17480905 Msa0841330:intron 20.0%
!!! TACACTCATAATTTTTTTGA+AGG + chr5_4:17480931-17480950 Msa0841330:intron 20.0%
!!! ATTTTTTTGAAGGATGATTA+TGG + chr5_4:17480941-17480960 Msa0841330:intron 20.0%
!!! TAAGAAATTTAGGTTAATCA+AGG + chr5_4:17481112-17481131 Msa0841330:intron 20.0%
!!! TCTTATTTACTTTTGTTTTC+TGG + chr5_4:17481156-17481175 Msa0841330:intron 20.0%
!!! TGTTTCTATTCTATTTCTAT+AGG + chr5_4:17481291-17481310 Msa0841330:intron 20.0%
!!! TTCTGAATAAACTTGTTATT+TGG + chr5_4:17482516-17482535 Msa0841330:intron 20.0%
!! ACAATTTGTATATAGAAAAC+CGG - chr5_4:17482756-17482775 None:intergenic 20.0%
!!! TGTTTTGAGTTTTTTCAAAT+AGG - chr5_4:17482842-17482861 None:intergenic 20.0%
!!! TTGAATTTTTGATAAATTCC+AGG + chr5_4:17482999-17483018 Msa0841330:intron 20.0%
!! CCGTTATTTATTTATCATAT+TGG + chr5_4:17483529-17483548 Msa0841330:intron 20.0%
!!! AAAGCATTTTAACAAAATGA+CGG + chr5_4:17483554-17483573 Msa0841330:intron 20.0%
!! ATTCGATAAGTTTATTAACA+TGG - chr5_4:17483597-17483616 None:intergenic 20.0%
!! ATTAAATATGCAACTTAAGA+AGG - chr5_4:17483912-17483931 None:intergenic 20.0%
!!! AATGCATGCAAAATTATTTT+TGG + chr5_4:17484790-17484809 Msa0841330:intron 20.0%
!!! AAAATTATTTTTGGAAGCTT+GGG + chr5_4:17484799-17484818 Msa0841330:intron 20.0%
!! TGGGAATATAATATTATGTT+TGG + chr5_4:17484818-17484837 Msa0841330:intron 20.0%
!!! TTTTTAAAAATCAGTACCAT+AGG - chr5_4:17484897-17484916 None:intergenic 20.0%
!!! ATTAAAATTCATATTTGCTG+AGG - chr5_4:17485024-17485043 None:intergenic 20.0%
!!! TTATTAGTTTTCATAGGTAT+GGG - chr5_4:17485181-17485200 None:intergenic 20.0%
!!! ATTATTAGTTTTCATAGGTA+TGG - chr5_4:17485182-17485201 None:intergenic 20.0%
!! TTTGAAAATGAAAAGCAAAT+AGG + chr5_4:17485343-17485362 Msa0841330:intron 20.0%
!!! AAGGATATGAATACATATTT+TGG - chr5_4:17485701-17485720 None:intergenic 20.0%
!!! TTCAAAACACTTACATTTTT+GGG - chr5_4:17485969-17485988 None:intergenic 20.0%
!!! ATTCAAAACACTTACATTTT+TGG - chr5_4:17485970-17485989 None:intergenic 20.0%
!!! TGAATATCTTGTTTGAATAT+TGG + chr5_4:17485997-17486016 Msa0841330:intron 20.0%
!! AATTAGATGATAGAAAATGT+TGG - chr5_4:17486439-17486458 None:intergenic 20.0%
!!! TAATTTTGATCTATATGAAC+AGG + chr5_4:17486454-17486473 Msa0841330:intron 20.0%
!!! AATTTTGATCTATATGAACA+GGG + chr5_4:17486455-17486474 Msa0841330:intron 20.0%
!! TATCAACTTTATGATTAACA+GGG - chr5_4:17486571-17486590 None:intergenic 20.0%
!! ATATCAACTTTATGATTAAC+AGG - chr5_4:17486572-17486591 None:intergenic 20.0%
!!! TTGCCTTTTGAAAATATATT+TGG + chr5_4:17486832-17486851 Msa0841330:three_prime_UTR 20.0%
!!! TCTCCAAATATATTTTCAAA+AGG - chr5_4:17486838-17486857 None:intergenic 20.0%
!! ATGTAAATTCATATCCTAAT+TGG - chr5_4:17487054-17487073 None:intergenic 20.0%
!! TCAAGGATTAATAGTTTTCT+AGG + chr5_4:17481129-17481148 Msa0841330:intron 25.0%
! TGGAAAATAATGATGTTGAT+AGG + chr5_4:17481230-17481249 Msa0841330:intron 25.0%
!! TTGCGTTTTTGTTCTATATT+TGG + chr5_4:17481338-17481357 Msa0841330:intron 25.0%
!! GTTTTTGTTCTATATTTGGA+TGG + chr5_4:17481342-17481361 Msa0841330:intron 25.0%
!!! TAGAATTTTTGAAGCGTAAA+AGG + chr5_4:17481926-17481945 Msa0841330:CDS 25.0%
!! ATACTTTTACCACTTCAATA+TGG + chr5_4:17482324-17482343 Msa0841330:intron 25.0%
!!! GGATAATGGATAATGAATAT+GGG - chr5_4:17482392-17482411 None:intergenic 25.0%
!!! AGGATAATGGATAATGAATA+TGG - chr5_4:17482393-17482412 None:intergenic 25.0%
! ATTATCCATTATCCTTTGTT+TGG + chr5_4:17482398-17482417 Msa0841330:intron 25.0%
! AATCATTACATCAGCAAATA+AGG - chr5_4:17482714-17482733 None:intergenic 25.0%
!! ATTTGCTGATGTAATGATTA+TGG + chr5_4:17482715-17482734 Msa0841330:intron 25.0%
! TATAAAAGAGACACTAGTAA+AGG - chr5_4:17483488-17483507 None:intergenic 25.0%
! TATTATTTCAGAAACTTTCC+CGG + chr5_4:17483627-17483646 Msa0841330:intron 25.0%
!! ATTCTTTTTGTGTCTTACAT+TGG + chr5_4:17483733-17483752 Msa0841330:intron 25.0%
!! TTCTTTTTGTGTCTTACATT+GGG + chr5_4:17483734-17483753 Msa0841330:intron 25.0%
!!! ATTTCCACCTAATATTTTGA+TGG + chr5_4:17484131-17484150 Msa0841330:three_prime_UTR 25.0%
! TTATGGTCCATCAAAATATT+AGG - chr5_4:17484141-17484160 None:intergenic 25.0%
! CGTATCTTCAATAAAATTCT+AGG + chr5_4:17484333-17484352 Msa0841330:intron 25.0%
! TTGGTTACTAATGAAATCAA+GGG + chr5_4:17484608-17484627 Msa0841330:three_prime_UTR 25.0%
!!! CAAAATTATTTTTGGAAGCT+TGG + chr5_4:17484798-17484817 Msa0841330:intron 25.0%
!!! TCATGTATATTATTGGTTTC+TGG + chr5_4:17484861-17484880 Msa0841330:intron 25.0%
! CATTGAAAAACTATGTTAGA+AGG - chr5_4:17484939-17484958 None:intergenic 25.0%
! GAGGATTTAATATATTTGCT+GGG - chr5_4:17485005-17485024 None:intergenic 25.0%
! TGAGGATTTAATATATTTGC+TGG - chr5_4:17485006-17485025 None:intergenic 25.0%
! AAACGACAACTAAAAATGAA+TGG - chr5_4:17485142-17485161 None:intergenic 25.0%
!!! CATTTTTAGTTGTCGTTTTA+AGG + chr5_4:17485144-17485163 Msa0841330:intron 25.0%
! TACAAAAGCAACAACTAAAA+AGG + chr5_4:17485380-17485399 Msa0841330:intron 25.0%
! AACAACTAAAAAGGAAGAAA+GGG + chr5_4:17485389-17485408 Msa0841330:intron 25.0%
!! TATGGTCTAGAATTTAGATA+AGG - chr5_4:17485429-17485448 None:intergenic 25.0%
! TATCTAAATTCTAGACCATA+TGG + chr5_4:17485429-17485448 Msa0841330:intron 25.0%
! ATCTAAATTCTAGACCATAT+GGG + chr5_4:17485430-17485449 Msa0841330:intron 25.0%
! TGTTACAAATTTATCCCATA+TGG - chr5_4:17485447-17485466 None:intergenic 25.0%
!!! ATACATATTTTGGTCACTTT+TGG - chr5_4:17485691-17485710 None:intergenic 25.0%
!! ATTGAATTTTATACAACTCC+AGG + chr5_4:17485792-17485811 Msa0841330:three_prime_UTR 25.0%
!!! TACACAGAATCAATTTGTTT+TGG + chr5_4:17485842-17485861 Msa0841330:three_prime_UTR 25.0%
!!! ACACAGAATCAATTTGTTTT+GGG + chr5_4:17485843-17485862 Msa0841330:three_prime_UTR 25.0%
! ATTCTGATTCAGGAATATTT+AGG + chr5_4:17486243-17486262 Msa0841330:three_prime_UTR 25.0%
! TTCTGATTCAGGAATATTTA+GGG + chr5_4:17486244-17486263 Msa0841330:three_prime_UTR 25.0%
! GAAAAGAAATCTGAAGATTA+TGG + chr5_4:17486295-17486314 Msa0841330:three_prime_UTR 25.0%
! ATATTTATCACTTGATTCAC+TGG - chr5_4:17486546-17486565 None:intergenic 25.0%
!! CTTTTTATATCTTGCTGAAA+TGG - chr5_4:17486639-17486658 None:intergenic 25.0%
!!! CTAACTTCATTTTAGCTAAT+GGG + chr5_4:17486969-17486988 Msa0841330:three_prime_UTR 25.0%
! AAACTAGGAAGTTTAGAAAT+TGG + chr5_4:17487185-17487204 Msa0841330:three_prime_UTR 25.0%
!! AAGTTTAGAAATTGGATTAG+TGG + chr5_4:17487193-17487212 Msa0841330:three_prime_UTR 25.0%
! AAGAATGAATTAACATCGAA+AGG - chr5_4:17487358-17487377 None:intergenic 25.0%
TTTCCGATGAGAAAAGAAAA+CGG - chr5_4:17480361-17480380 None:intergenic 30.0%
! AAAAAGAGAAAACGGTTTTC+CGG - chr5_4:17480401-17480420 None:intergenic 30.0%
!!! TATGCTACTTTTTGTGTGAT+TGG + chr5_4:17481196-17481215 Msa0841330:intron 30.0%
!!! ATGCTACTTTTTGTGTGATT+GGG + chr5_4:17481197-17481216 Msa0841330:intron 30.0%
!! TGTGAAGTACTTTGATTTGA+AGG + chr5_4:17481415-17481434 Msa0841330:intron 30.0%
ATTTCAACATTTACCAGCTA+TGG - chr5_4:17481449-17481468 None:intergenic 30.0%
TAGCTGGTAAATGTTGAAAT+TGG + chr5_4:17481449-17481468 Msa0841330:intron 30.0%
AGTCAATAACTTGATGTTCA+GGG - chr5_4:17481492-17481511 None:intergenic 30.0%
!! TCAAGTTATTGACTCCATAA+TGG + chr5_4:17481498-17481517 Msa0841330:intron 30.0%
AAAGGATGCAATTCAACAAA+AGG - chr5_4:17481564-17481583 None:intergenic 30.0%
! ATTATGCTTTGCGTTGATAT+CGG + chr5_4:17481613-17481632 Msa0841330:intron 30.0%
! TTCATTTTCCAAAGAATCAC+CGG + chr5_4:17481641-17481660 Msa0841330:intron 30.0%
! TGTTTCAGTTTGTTCATTGT+TGG + chr5_4:17481727-17481746 Msa0841330:intron 30.0%
GTAAGATGTTTCACATTTCA+CGG - chr5_4:17481858-17481877 None:intergenic 30.0%
TGAAATGTGAAACATCTTAC+AGG + chr5_4:17481858-17481877 Msa0841330:intron 30.0%
TAAGTTTGATACAAGCGATT+TGG + chr5_4:17482095-17482114 Msa0841330:CDS 30.0%
ATCTTCTGCAAATAAACCAA+AGG - chr5_4:17482183-17482202 None:intergenic 30.0%
ATACCATATTTAGAAGCTTC+TGG - chr5_4:17482210-17482229 None:intergenic 30.0%
TAGTTAATTAGTAAACCCTG+TGG + chr5_4:17482270-17482289 Msa0841330:intron 30.0%
CTAATCCAAACAAAGGATAA+TGG - chr5_4:17482406-17482425 None:intergenic 30.0%
TAATTGAAGCTACTATACGA+TGG - chr5_4:17482432-17482451 None:intergenic 30.0%
TAAACATTGAAATTCTTGCG+AGG - chr5_4:17482478-17482497 None:intergenic 30.0%
CGCAAGAATTTCAATGTTTA+TGG + chr5_4:17482478-17482497 Msa0841330:intron 30.0%
AAATAAGGAACTTCTTGGAA+AGG - chr5_4:17482699-17482718 None:intergenic 30.0%
GTAATGATTATGGTCTATGA+CGG + chr5_4:17482725-17482744 Msa0841330:intron 30.0%
GTTTCACGATAGAAAATGAA+TGG - chr5_4:17482815-17482834 None:intergenic 30.0%
! AAAGTCACATTTTTCATGAG+TGG + chr5_4:17483152-17483171 Msa0841330:CDS 30.0%
ATTCCGTGAATATGAGAAAA+TGG + chr5_4:17483268-17483287 Msa0841330:intron 30.0%
!!! TTGCCATTTTCTCATATTCA+CGG - chr5_4:17483274-17483293 None:intergenic 30.0%
ATATGAGAAAATGGCAAACA+AGG + chr5_4:17483277-17483296 Msa0841330:intron 30.0%
! AAATTCCTTTTCCAAGTAAG+TGG - chr5_4:17483342-17483361 None:intergenic 30.0%
! CTTACTTGGAAAAGGAATTT+TGG + chr5_4:17483342-17483361 Msa0841330:CDS 30.0%
! AATAGACGCAAAGTTGATTT+GGG - chr5_4:17483656-17483675 None:intergenic 30.0%
TCTATTGGAAACATCAATTC+CGG + chr5_4:17483670-17483689 Msa0841330:CDS 30.0%
GACATAAGAAATTGTCATAC+CGG - chr5_4:17483692-17483711 None:intergenic 30.0%
! ACTGATATTTTGTCAAGTGA+TGG + chr5_4:17484066-17484085 Msa0841330:three_prime_UTR 30.0%
AAAATTCTAGGTTTCAACTG+TGG + chr5_4:17484345-17484364 Msa0841330:intron 30.0%
TTTGCAAAGAAGTTCTTCAT+GGG - chr5_4:17484463-17484482 None:intergenic 30.0%
GTTGGTTACTAATGAAATCA+AGG + chr5_4:17484607-17484626 Msa0841330:three_prime_UTR 30.0%
!! TTCTGGAATTCTAAATCCTA+TGG + chr5_4:17484878-17484897 Msa0841330:intron 30.0%
ACTATGTTAGAAGGAAGTTA+TGG - chr5_4:17484930-17484949 None:intergenic 30.0%
ATTGCCAAAACTAACATACT+GGG - chr5_4:17485082-17485101 None:intergenic 30.0%
AATACTGTCAAGGATCTTAA+AGG - chr5_4:17485239-17485258 None:intergenic 30.0%
GTGAGATAAAAATACTGTCA+AGG - chr5_4:17485249-17485268 None:intergenic 30.0%
ATACCCTTAAGTACTTATTG+CGG - chr5_4:17485289-17485308 None:intergenic 30.0%
CAACAACTAAAAAGGAAGAA+AGG + chr5_4:17485388-17485407 Msa0841330:intron 30.0%
TTATCTGAGAGAGGATATTA+CGG + chr5_4:17485599-17485618 Msa0841330:three_prime_UTR 30.0%
!!! CACAGAATCAATTTGTTTTG+GGG + chr5_4:17485844-17485863 Msa0841330:three_prime_UTR 30.0%
TCAGCAAGATATAAAAAGTC+AGG + chr5_4:17486641-17486660 Msa0841330:three_prime_UTR 30.0%
ATATAAAAAGTCAGGCAATG+AGG + chr5_4:17486649-17486668 Msa0841330:three_prime_UTR 30.0%
!!! GCTAACTTCATTTTAGCTAA+TGG + chr5_4:17486968-17486987 Msa0841330:three_prime_UTR 30.0%
! AAAATCCAAGTGATTGATTC+AGG + chr5_4:17487008-17487027 Msa0841330:three_prime_UTR 30.0%
TGAATTTACATTCTTTGTGC+AGG + chr5_4:17487063-17487082 Msa0841330:three_prime_UTR 30.0%
TTTACATTCATCCGTTGTTT+AGG + chr5_4:17487239-17487258 Msa0841330:three_prime_UTR 30.0%
ATGAATTAACATCGAAAGGA+GGG - chr5_4:17487354-17487373 None:intergenic 30.0%
AATGAATTAACATCGAAAGG+AGG - chr5_4:17487355-17487374 None:intergenic 30.0%
! TCTCCGTTTTCTTTTCTCAT+CGG + chr5_4:17480355-17480374 Msa0841330:five_prime_UTR 35.0%
! AAACAAACTTTTCCGTTCAC+CGG + chr5_4:17480379-17480398 Msa0841330:five_prime_UTR 35.0%
!! TTCCTTCTAGCTTACGAAAA+CGG + chr5_4:17480678-17480697 Msa0841330:five_prime_UTR 35.0%
! GTAACTTGTAACCACTAACA+GGG - chr5_4:17481376-17481395 None:intergenic 35.0%
! AGTAACTTGTAACCACTAAC+AGG - chr5_4:17481377-17481396 None:intergenic 35.0%
GAGTCAATAACTTGATGTTC+AGG - chr5_4:17481493-17481512 None:intergenic 35.0%
ACTCAAAGCAATCACCATTA+TGG - chr5_4:17481515-17481534 None:intergenic 35.0%
! ATGCTTTAGCTTATTCGAGT+TGG - chr5_4:17481588-17481607 None:intergenic 35.0%
! TCATTTTCCAAAGAATCACC+GGG + chr5_4:17481642-17481661 Msa0841330:intron 35.0%
TTGGAATATACTCACATGCA+AGG - chr5_4:17481830-17481849 None:intergenic 35.0%
TTCACATTTCACGGTTAGAT+TGG - chr5_4:17481849-17481868 None:intergenic 35.0%
TGAAACATCTTACAGGTAGA+AGG + chr5_4:17481865-17481884 Msa0841330:intron 35.0%
TCCACTTCTATTCATCAAGT+TGG - chr5_4:17481995-17482014 None:intergenic 35.0%
AACTTGATGAATAGAAGTGG+AGG + chr5_4:17481994-17482013 Msa0841330:CDS 35.0%
!!! ATCCAGATGTGTTTTTCAAG+CGG + chr5_4:17482064-17482083 Msa0841330:CDS 35.0%
! TTGATACAAGCGATTTGGAT+TGG + chr5_4:17482100-17482119 Msa0841330:CDS 35.0%
TCTTCAAATTCCTCCTTTGT+TGG - chr5_4:17482159-17482178 None:intergenic 35.0%
AATATGGTATGTATCCGTGT+TGG + chr5_4:17482220-17482239 Msa0841330:intron 35.0%
! TACCACTTCAATATGGCTTT+TGG + chr5_4:17482331-17482350 Msa0841330:intron 35.0%
! ACCACTTCAATATGGCTTTT+GGG + chr5_4:17482332-17482351 Msa0841330:intron 35.0%
ATGGAAGCTAATCCAAACAA+AGG - chr5_4:17482413-17482432 None:intergenic 35.0%
! TCCTAAAGTGTTTCTCAAGA+AGG + chr5_4:17482614-17482633 Msa0841330:intron 35.0%
ACCTTCTTGAGAAACACTTT+AGG - chr5_4:17482618-17482637 None:intergenic 35.0%
GCAAAAATAGAGAGCTAATG+TGG - chr5_4:17482644-17482663 None:intergenic 35.0%
TCAGCAAATAAGGAACTTCT+TGG - chr5_4:17482704-17482723 None:intergenic 35.0%
AATTTACCATGTCCTCCTTA+CGG + chr5_4:17482923-17482942 Msa0841330:intron 35.0%
TTTCATCTATCCTTTCCGTA+AGG - chr5_4:17482941-17482960 None:intergenic 35.0%
GAAACAATCTTGCATATACC+TGG - chr5_4:17483020-17483039 None:intergenic 35.0%
! TCACATTTTTCATGAGTGGA+AGG + chr5_4:17483156-17483175 Msa0841330:CDS 35.0%
!! AAGGAATTTTGGCAGGAAAT+TGG + chr5_4:17483353-17483372 Msa0841330:CDS 35.0%
GAATATGCATGTGATGTTGA+TGG + chr5_4:17483398-17483417 Msa0841330:CDS 35.0%
ATCAGTAGGAGAAGTTGAAA+AGG - chr5_4:17483429-17483448 None:intergenic 35.0%
GAACAGCAAATGGAATTTGA+AGG + chr5_4:17483457-17483476 Msa0841330:CDS 35.0%
! CAATAGACGCAAAGTTGATT+TGG - chr5_4:17483657-17483676 None:intergenic 35.0%
CAAATCAACTTTGCGTCTAT+TGG + chr5_4:17483655-17483674 Msa0841330:CDS 35.0%
! TTTTTGTGTCTTACATTGGG+CGG + chr5_4:17483737-17483756 Msa0841330:intron 35.0%
AGCATTCCAATGTATAGCAT+GGG - chr5_4:17483783-17483802 None:intergenic 35.0%
! TGCTGTTTAGTATGTTTGCA+TGG + chr5_4:17483799-17483818 Msa0841330:intron 35.0%
TGGAGGATCATTATTTGTAC+AGG + chr5_4:17483826-17483845 Msa0841330:intron 35.0%
! TTTTCCCAAGAGAACATCAA+AGG - chr5_4:17484103-17484122 None:intergenic 35.0%
TGGTCCATCAAAATATTAGG+TGG - chr5_4:17484138-17484157 None:intergenic 35.0%
! TTTGAACAGCCTTATAGACA+GGG - chr5_4:17484167-17484186 None:intergenic 35.0%
!! TTTTGAACAGCCTTATAGAC+AGG - chr5_4:17484168-17484187 None:intergenic 35.0%
!! TGAATTTTGCACTTGGTGAT+TGG + chr5_4:17484376-17484395 Msa0841330:three_prime_UTR 35.0%
GAGATATGCACTTCTTAACA+GGG + chr5_4:17484425-17484444 Msa0841330:three_prime_UTR 35.0%
TTGCAAAGAAGTTCTTCATG+GGG - chr5_4:17484462-17484481 None:intergenic 35.0%
CTTTGCAAAGAAGTTCTTCA+TGG - chr5_4:17484464-17484483 None:intergenic 35.0%
GATGCTTATTCATTCAAGCT+TGG + chr5_4:17484488-17484507 Msa0841330:three_prime_UTR 35.0%
TGAGATAACAAGTCTGAAGA+GGG - chr5_4:17484534-17484553 None:intergenic 35.0%
ATGAGATAACAAGTCTGAAG+AGG - chr5_4:17484535-17484554 None:intergenic 35.0%
ATGCATTGAAACACACTCTT+AGG - chr5_4:17484777-17484796 None:intergenic 35.0%
CATTGCCAAAACTAACATAC+TGG - chr5_4:17485083-17485102 None:intergenic 35.0%
AAGTACTTATTGCGGAGAAA+GGG - chr5_4:17485281-17485300 None:intergenic 35.0%
TAAGTACTTATTGCGGAGAA+AGG - chr5_4:17485282-17485301 None:intergenic 35.0%
TTCTCCGCAATAAGTACTTA+AGG + chr5_4:17485282-17485301 Msa0841330:intron 35.0%
TCTCCGCAATAAGTACTTAA+GGG + chr5_4:17485283-17485302 Msa0841330:intron 35.0%
!! CTCTGAAACATATCTGACAA+AGG - chr5_4:17485720-17485739 None:intergenic 35.0%
! TTCTGAAAGAGAACAAAGAG+TGG - chr5_4:17485925-17485944 None:intergenic 35.0%
CAACTAACACTGCATTCTTT+AGG + chr5_4:17486070-17486089 Msa0841330:intron 35.0%
AGCTTTCATGATACAAAGCA+GGG - chr5_4:17486160-17486179 None:intergenic 35.0%
!! TCTCTGCTTTAAGAGAAGAA+GGG - chr5_4:17486277-17486296 None:intergenic 35.0%
!! TTCTCTGCTTTAAGAGAAGA+AGG - chr5_4:17486278-17486297 None:intergenic 35.0%
AGACACATAAACAGAATCTC+TGG - chr5_4:17486395-17486414 None:intergenic 35.0%
TTTATGTGTCTAGCGATTCT+TGG + chr5_4:17486404-17486423 Msa0841330:intron 35.0%
CTTGAAGAACAGATTTGCAA+GGG + chr5_4:17486601-17486620 Msa0841330:three_prime_UTR 35.0%
TTGAAGAACAGATTTGCAAG+GGG + chr5_4:17486602-17486621 Msa0841330:three_prime_UTR 35.0%
TCTCTATGCCCAAAAATGAA+GGG - chr5_4:17486784-17486803 None:intergenic 35.0%
CCTAATTGGTTAATACCTTG+CGG - chr5_4:17487040-17487059 None:intergenic 35.0%
!!! TCTAAACTTCCTAGTTTTGC+AGG - chr5_4:17487182-17487201 None:intergenic 35.0%
TCCTAACAAGACCTAAACAA+CGG - chr5_4:17487253-17487272 None:intergenic 35.0%
!! TTTAGGTCTTGTTAGGAACA+TGG + chr5_4:17487256-17487275 Msa0841330:three_prime_UTR 35.0%
!! TTAGGTCTTGTTAGGAACAT+GGG + chr5_4:17487257-17487276 Msa0841330:three_prime_UTR 35.0%
TGAATTAACATCGAAAGGAG+GGG - chr5_4:17487353-17487372 None:intergenic 35.0%
GTGAATGCGAGTGTTTCAAT+CGG - chr5_4:17480467-17480486 None:intergenic 40.0%
CGTTCTAATCTACAACGTTC+AGG + chr5_4:17480601-17480620 Msa0841330:five_prime_UTR 40.0%
AACGTTCAGGATCGTGATTT+AGG + chr5_4:17480614-17480633 Msa0841330:five_prime_UTR 40.0%
ACGTTCAGGATCGTGATTTA+GGG + chr5_4:17480615-17480634 Msa0841330:five_prime_UTR 40.0%
GGAACGAGTTCGTAATGAAA+TGG + chr5_4:17480711-17480730 Msa0841330:exon 40.0%
CGAGTTCGTAATGAAATGGT+AGG + chr5_4:17480715-17480734 Msa0841330:intron 40.0%
AGATCTGAACGACAAACAGA+AGG - chr5_4:17480833-17480852 None:intergenic 40.0%
! TTGTGTGATTGGGCTTTATG+AGG + chr5_4:17481207-17481226 Msa0841330:intron 40.0%
!!! TGGTTTTTTGACCCTGTTAG+TGG + chr5_4:17481362-17481381 Msa0841330:intron 40.0%
!! TAGCTTATTCGAGTTGGCAA+AGG - chr5_4:17481582-17481601 None:intergenic 40.0%
! CATTTTCCAAAGAATCACCG+GGG + chr5_4:17481643-17481662 Msa0841330:intron 40.0%
AATCATGCAAAACATTGCCC+CGG - chr5_4:17481663-17481682 None:intergenic 40.0%
GCTTAGTTTCGAAGTAGTTG+TGG + chr5_4:17481690-17481709 Msa0841330:intron 40.0%
AACATCTTACAGGTAGAAGG+AGG + chr5_4:17481868-17481887 Msa0841330:intron 40.0%
GCCAACTTGATGAATAGAAG+TGG + chr5_4:17481991-17482010 Msa0841330:CDS 40.0%
TTCCGCTTGAAAAACACATC+TGG - chr5_4:17482069-17482088 None:intergenic 40.0%
!!! AGATGTGTTTTTCAAGCGGA+AGG + chr5_4:17482068-17482087 Msa0841330:CDS 40.0%
TCCTGTGTATTCTCCAACAA+AGG + chr5_4:17482143-17482162 Msa0841330:CDS 40.0%
TCCTTTGTTGGAGAATACAC+AGG - chr5_4:17482147-17482166 None:intergenic 40.0%
TGTGTATTCTCCAACAAAGG+AGG + chr5_4:17482146-17482165 Msa0841330:CDS 40.0%
GGAGGAATTTGAAGATCCTT+TGG + chr5_4:17482164-17482183 Msa0841330:CDS 40.0%
GCTCCAGAAGCTTCTAAATA+TGG + chr5_4:17482204-17482223 Msa0841330:CDS 40.0%
ATCAGTGCAAACTACCAACA+CGG - chr5_4:17482237-17482256 None:intergenic 40.0%
GTGCATATGTTAATGCCACA+GGG - chr5_4:17482288-17482307 None:intergenic 40.0%
TGTGCATATGTTAATGCCAC+AGG - chr5_4:17482289-17482308 None:intergenic 40.0%
ACCCAAAAGCCATATTGAAG+TGG - chr5_4:17482336-17482355 None:intergenic 40.0%
!! TGGCTTTTGGGTGTGTTTTT+AGG + chr5_4:17482344-17482363 Msa0841330:intron 40.0%
!! GGCTTTTGGGTGTGTTTTTA+GGG + chr5_4:17482345-17482364 Msa0841330:intron 40.0%
AAGGAACTTCTTGGAAAGGT+CGG - chr5_4:17482695-17482714 None:intergenic 40.0%
AACTCAATAGACTTACCGAC+AGG + chr5_4:17482874-17482893 Msa0841330:intron 40.0%
AATAGACTTACCGACAGGTA+TGG + chr5_4:17482879-17482898 Msa0841330:intron 40.0%
ACTACAATCTCCATACCTGT+CGG - chr5_4:17482892-17482911 None:intergenic 40.0%
TTCATTAAAACAACCCCAGC+AGG - chr5_4:17483062-17483081 None:intergenic 40.0%
!!! TGCTGGGGTTGTTTTAATGA+AGG + chr5_4:17483061-17483080 Msa0841330:CDS 40.0%
!! GTTTTAATGAAGGAGCAACC+TGG + chr5_4:17483071-17483090 Msa0841330:CDS 40.0%
CTGGTTGTAAACTTGAATCC+AGG - chr5_4:17483092-17483111 None:intergenic 40.0%
!! CTTGGAAAAGGAATTTTGGC+AGG + chr5_4:17483346-17483365 Msa0841330:CDS 40.0%
TTACATTGGGCGGTATTTCA+GGG + chr5_4:17483747-17483766 Msa0841330:intron 40.0%
ACAGAACCCATGCTATACAT+TGG + chr5_4:17483774-17483793 Msa0841330:intron 40.0%
CAGCATTCCAATGTATAGCA+TGG - chr5_4:17483784-17483803 None:intergenic 40.0%
TAGTATGTTTGCATGGCATG+TGG + chr5_4:17483806-17483825 Msa0841330:intron 40.0%
AGCATTAACTATCAGCACTG+CGG + chr5_4:17483964-17483983 Msa0841330:intron 40.0%
AAAACTTGGTATGGTATCCC+TGG + chr5_4:17483994-17484013 Msa0841330:three_prime_UTR 40.0%
!! ACGCAGCTTTGGAATTTGAA+AGG + chr5_4:17484019-17484038 Msa0841330:three_prime_UTR 40.0%
!! CGCAGCTTTGGAATTTGAAA+GGG + chr5_4:17484020-17484039 Msa0841330:three_prime_UTR 40.0%
!! AGCTTTGGAATTTGAAAGGG+TGG + chr5_4:17484023-17484042 Msa0841330:three_prime_UTR 40.0%
! TTGTCAAGTGATGGAGAAGA+TGG + chr5_4:17484075-17484094 Msa0841330:three_prime_UTR 40.0%
CCTTATAGACAGGGACTTTA+TGG - chr5_4:17484158-17484177 None:intergenic 40.0%
CCATAAAGTCCCTGTCTATA+AGG + chr5_4:17484155-17484174 Msa0841330:three_prime_UTR 40.0%
TATAAGGCTGTTCAAAAGCC+AGG + chr5_4:17484171-17484190 Msa0841330:three_prime_UTR 40.0%
ATAAGGCTGTTCAAAAGCCA+GGG + chr5_4:17484172-17484191 Msa0841330:three_prime_UTR 40.0%
AAGGTTATTACAAACTCCCC+TGG - chr5_4:17484192-17484211 None:intergenic 40.0%
! GAAGCAGTGAATTTTGCACT+TGG + chr5_4:17484369-17484388 Msa0841330:three_prime_UTR 40.0%
!! TTGGTGATTGGTTTCCTCTT+GGG + chr5_4:17484388-17484407 Msa0841330:three_prime_UTR 40.0%
GGAGATATGCACTTCTTAAC+AGG + chr5_4:17484424-17484443 Msa0841330:three_prime_UTR 40.0%
AGTGTTTCTTCTCATTCGCA+TGG + chr5_4:17484639-17484658 Msa0841330:three_prime_UTR 40.0%
TGTTAGAAGGAAGTTATGGC+TGG - chr5_4:17484926-17484945 None:intergenic 40.0%
CCAAAACTAACATACTGGGA+GGG - chr5_4:17485078-17485097 None:intergenic 40.0%
CTAAAAAGGAAGAAAGGGTG+TGG + chr5_4:17485394-17485413 Msa0841330:intron 40.0%
AAATCTCTTGACCTCATCTG+TGG + chr5_4:17485561-17485580 Msa0841330:three_prime_UTR 40.0%
AATCTCTTGACCTCATCTGT+GGG + chr5_4:17485562-17485581 Msa0841330:three_prime_UTR 40.0%
ACACACTCTTTATCTGAGAG+AGG + chr5_4:17485590-17485609 Msa0841330:three_prime_UTR 40.0%
GAGAGAGGATATTACGGATA+TGG + chr5_4:17485605-17485624 Msa0841330:three_prime_UTR 40.0%
AAGATGTTTGAGCAGGAAGA+TGG + chr5_4:17485639-17485658 Msa0841330:three_prime_UTR 40.0%
AGATGTTTGAGCAGGAAGAT+GGG + chr5_4:17485640-17485659 Msa0841330:three_prime_UTR 40.0%
TTTCAGAGAGCTGAAGCAAA+TGG + chr5_4:17485732-17485751 Msa0841330:three_prime_UTR 40.0%
CCACACTCTGGATTATTTGT+TGG - chr5_4:17485822-17485841 None:intergenic 40.0%
CCAACAAATAATCCAGAGTG+TGG + chr5_4:17485819-17485838 Msa0841330:intron 40.0%
!! ACTTACATTTTTGGGAGCAG+AGG - chr5_4:17485961-17485980 None:intergenic 40.0%
! CTGTTTAAAACCTCATGCAG+TGG - chr5_4:17486038-17486057 None:intergenic 40.0%
GCTTTCATGATACAAAGCAG+GGG - chr5_4:17486159-17486178 None:intergenic 40.0%
GAGCTTTCATGATACAAAGC+AGG - chr5_4:17486161-17486180 None:intergenic 40.0%
TCACTGTCGTTATCCACTAT+GGG - chr5_4:17486221-17486240 None:intergenic 40.0%
ATCACTGTCGTTATCCACTA+TGG - chr5_4:17486222-17486241 None:intergenic 40.0%
GACAGTGATGATTCTGATTC+AGG + chr5_4:17486233-17486252 Msa0841330:three_prime_UTR 40.0%
TTCAAAACATTCTGAGCAGC+AGG + chr5_4:17486319-17486338 Msa0841330:three_prime_UTR 40.0%
TCTCTGGCAGATATACATGA+TGG - chr5_4:17486379-17486398 None:intergenic 40.0%
TTGAAGAAAGTCCTTCCTGA+AGG + chr5_4:17486488-17486507 Msa0841330:three_prime_UTR 40.0%
!!! TGTTGCTTTTTCCTTCAGGA+AGG - chr5_4:17486502-17486521 None:intergenic 40.0%
TTCCTGAAGGAAAAAGCAAC+AGG + chr5_4:17486501-17486520 Msa0841330:three_prime_UTR 40.0%
CCTTGCAAATCTGTTCTTCA+AGG - chr5_4:17486603-17486622 None:intergenic 40.0%
CCTTGAAGAACAGATTTGCA+AGG + chr5_4:17486600-17486619 Msa0841330:three_prime_UTR 40.0%
AACAGATTTGCAAGGGGAAA+TGG + chr5_4:17486608-17486627 Msa0841330:three_prime_UTR 40.0%
AATCGCCTTCCATTGAGATT+GGG + chr5_4:17486735-17486754 Msa0841330:three_prime_UTR 40.0%
CTCTCTATGCCCAAAAATGA+AGG - chr5_4:17486785-17486804 None:intergenic 40.0%
TGCTTCCTGAATCAATCACT+TGG - chr5_4:17487016-17487035 None:intergenic 40.0%
! CCGCAAGGTATTAACCAATT+AGG + chr5_4:17487037-17487056 Msa0841330:three_prime_UTR 40.0%
!!! AACTTCCTAGTTTTGCAGGT+CGG - chr5_4:17487178-17487197 None:intergenic 40.0%
!! TCCGTTGTTTAGGTCTTGTT+AGG + chr5_4:17487249-17487268 Msa0841330:three_prime_UTR 40.0%
GAATTAACATCGAAAGGAGG+GGG - chr5_4:17487352-17487371 None:intergenic 40.0%
AACAGTGATGAGGAGAGAGA+AGG - chr5_4:17480333-17480352 None:intergenic 45.0%
AACGGAGAGAAACAGTGATG+AGG - chr5_4:17480343-17480362 None:intergenic 45.0%
! GAAAACGGTTTTCCGGTGAA+CGG - chr5_4:17480394-17480413 None:intergenic 45.0%
! CTCCGTTTTCGTAAGCTAGA+AGG - chr5_4:17480683-17480702 None:intergenic 45.0%
TTACGAAAACGGAGACCGTA+GGG + chr5_4:17480689-17480708 Msa0841330:five_prime_UTR 45.0%
ATTACGAACTCGTTCCCCTA+CGG - chr5_4:17480707-17480726 None:intergenic 45.0%
! TGTGATTGGGCTTTATGAGG+TGG + chr5_4:17481210-17481229 Msa0841330:intron 45.0%
!!! CAAGTTACTTTTACCGCGTG+AGG + chr5_4:17481388-17481407 Msa0841330:intron 45.0%
TACTTCACAATCACCTCACG+CGG - chr5_4:17481404-17481423 None:intergenic 45.0%
! GAAGGCAATTTTGCCATAGC+TGG + chr5_4:17481433-17481452 Msa0841330:intron 45.0%
! GCTTTGCGTTGATATCGGTT+TGG + chr5_4:17481618-17481637 Msa0841330:intron 45.0%
GATCTGAGGAGGCTAGAAAT+GGG + chr5_4:17481902-17481921 Msa0841330:CDS 45.0%
TTGAGAGGTTCACCTTCTTG+TGG + chr5_4:17482024-17482043 Msa0841330:CDS 45.0%
!!! TGTGTTTTTCAAGCGGAAGG+TGG + chr5_4:17482071-17482090 Msa0841330:CDS 45.0%
GGAGAATACACAGGACATTC+TGG - chr5_4:17482138-17482157 None:intergenic 45.0%
CATCTATCCTTTCCGTAAGG+AGG - chr5_4:17482938-17482957 None:intergenic 45.0%
CTTCAGTATCCCATTCAGCA+AGG - chr5_4:17483130-17483149 None:intergenic 45.0%
! ATGTCTTCCTGCCACTTACT+TGG + chr5_4:17483328-17483347 Msa0841330:CDS 45.0%
! TCCTGCCACTTACTTGGAAA+AGG + chr5_4:17483334-17483353 Msa0841330:CDS 45.0%
! TCCTTTTCCAAGTAAGTGGC+AGG - chr5_4:17483338-17483357 None:intergenic 45.0%
! TTTTGGCAGGAAATTGGTCG+TGG + chr5_4:17483359-17483378 Msa0841330:CDS 45.0%
TTTGGCAGGAAATTGGTCGT+GGG + chr5_4:17483360-17483379 Msa0841330:CDS 45.0%
GGAAATTGGTCGTGGGAAAA+TGG + chr5_4:17483367-17483386 Msa0841330:CDS 45.0%
ACTTCTCCTACTGATCAGCT+TGG + chr5_4:17483434-17483453 Msa0841330:CDS 45.0%
CTTCTCCTACTGATCAGCTT+GGG + chr5_4:17483435-17483454 Msa0841330:CDS 45.0%
ATCAGCTTGGGAACAGCAAA+TGG + chr5_4:17483447-17483466 Msa0841330:CDS 45.0%
!! CAAAGTTGATTTGGGCAACC+GGG - chr5_4:17483648-17483667 None:intergenic 45.0%
!! GCAAAGTTGATTTGGGCAAC+CGG - chr5_4:17483649-17483668 None:intergenic 45.0%
CTTACATTGGGCGGTATTTC+AGG + chr5_4:17483746-17483765 Msa0841330:intron 45.0%
TATGTTTGCATGGCATGTGG+AGG + chr5_4:17483809-17483828 Msa0841330:intron 45.0%
! GGAGCGTCAAAAACTTGGTA+TGG + chr5_4:17483985-17484004 Msa0841330:three_prime_UTR 45.0%
TGGAGCCTTTGATGTTCTCT+TGG + chr5_4:17484095-17484114 Msa0841330:three_prime_UTR 45.0%
GGAGCCTTTGATGTTCTCTT+GGG + chr5_4:17484096-17484115 Msa0841330:three_prime_UTR 45.0%
TAAGGCTGTTCAAAAGCCAG+GGG + chr5_4:17484173-17484192 Msa0841330:three_prime_UTR 45.0%
TACCATTCAGGCTTCAGTCA+TGG + chr5_4:17484222-17484241 Msa0841330:three_prime_UTR 45.0%
AACCATGACTGAAGCCTGAA+TGG - chr5_4:17484227-17484246 None:intergenic 45.0%
!! CTTGGTGATTGGTTTCCTCT+TGG + chr5_4:17484387-17484406 Msa0841330:three_prime_UTR 45.0%
!! TGGTGATTGGTTTCCTCTTG+GGG + chr5_4:17484389-17484408 Msa0841330:three_prime_UTR 45.0%
AGTTCTTCATGGGGCAGTAA+AGG - chr5_4:17484453-17484472 None:intergenic 45.0%
GTTTCCAGCATTGTGCTAGT+TGG + chr5_4:17484589-17484608 Msa0841330:three_prime_UTR 45.0%
GTAACCAACTAGCACAATGC+TGG - chr5_4:17484596-17484615 None:intergenic 45.0%
CATAACAGTCACGTTTGCAC+AGG - chr5_4:17484680-17484699 None:intergenic 45.0%
TTACCATGGCGTAAGCATAC+AGG - chr5_4:17484735-17484754 None:intergenic 45.0%
!! CCCTCCCAGTATGTTAGTTT+TGG + chr5_4:17485075-17485094 Msa0841330:intron 45.0%
GCCAAAACTAACATACTGGG+AGG - chr5_4:17485079-17485098 None:intergenic 45.0%
CTTATTGCGGAGAAAGGGAT+GGG - chr5_4:17485276-17485295 None:intergenic 45.0%
ACTTATTGCGGAGAAAGGGA+TGG - chr5_4:17485277-17485296 None:intergenic 45.0%
TGCAGCAAAGATGTTTGAGC+AGG + chr5_4:17485632-17485651 Msa0841330:three_prime_UTR 45.0%
TGAGCAGGAAGATGGGATAT+TGG + chr5_4:17485647-17485666 Msa0841330:three_prime_UTR 45.0%
! GGATTATTTGTTGGCAGTCC+TGG - chr5_4:17485813-17485832 None:intergenic 45.0%
TGATTCTGTGTACCACACTC+TGG - chr5_4:17485834-17485853 None:intergenic 45.0%
!! ACGTCAGACACTTCTGGTTT+AGG - chr5_4:17485885-17485904 None:intergenic 45.0%
AAGGAAACGTCAGACACTTC+TGG - chr5_4:17485891-17485910 None:intergenic 45.0%
AAGAGTGGATGCAGCAGAAA+AGG - chr5_4:17485910-17485929 None:intergenic 45.0%
ACACTGCATTCTTTAGGCTG+AGG + chr5_4:17486076-17486095 Msa0841330:intron 45.0%
CACTGCATTCTTTAGGCTGA+GGG + chr5_4:17486077-17486096 Msa0841330:intron 45.0%
ACTGCATTCTTTAGGCTGAG+GGG + chr5_4:17486078-17486097 Msa0841330:intron 45.0%
AGAAGATTCGCATGCACTGT+TGG - chr5_4:17486132-17486151 None:intergenic 45.0%
!!! TGCCTGTTGCTTTTTCCTTC+AGG - chr5_4:17486506-17486525 None:intergenic 45.0%
TTTGCTGCAACCTCTCTCTT+CGG - chr5_4:17486706-17486725 None:intergenic 45.0%
GAATCGCCTTCCATTGAGAT+TGG + chr5_4:17486734-17486753 Msa0841330:three_prime_UTR 45.0%
TTTGGCCCAATCTCAATGGA+AGG - chr5_4:17486743-17486762 None:intergenic 45.0%
! AGTCCAAGGCCCTTCATTTT+TGG + chr5_4:17486772-17486791 Msa0841330:three_prime_UTR 45.0%
!! GTCCAAGGCCCTTCATTTTT+GGG + chr5_4:17486773-17486792 Msa0841330:three_prime_UTR 45.0%
TGCAGACTGCCCAAATGTTA+GGG - chr5_4:17487093-17487112 None:intergenic 45.0%
TAACATTTGGGCAGTCTGCA+CGG + chr5_4:17487093-17487112 Msa0841330:three_prime_UTR 45.0%
! GGTGTTTTTCCTACTTCGCT+GGG + chr5_4:17487143-17487162 Msa0841330:three_prime_UTR 45.0%
CATTCACTCTCAATTCCCCG+TGG + chr5_4:17480480-17480499 Msa0841330:five_prime_UTR 50.0%
CGTAGCGTTGTAAGACAACG+AGG - chr5_4:17480583-17480602 None:intergenic 50.0%
CTTACGAAAACGGAGACCGT+AGG + chr5_4:17480688-17480707 Msa0841330:five_prime_UTR 50.0%
TACGAAAACGGAGACCGTAG+GGG + chr5_4:17480690-17480709 Msa0841330:five_prime_UTR 50.0%
ACATTGCCCCGGTGATTCTT+TGG - chr5_4:17481652-17481671 None:intergenic 50.0%
AGGTAGAGTACGACGATCTG+AGG + chr5_4:17481888-17481907 Msa0841330:CDS 50.0%
TAGAGTACGACGATCTGAGG+AGG + chr5_4:17481891-17481910 Msa0841330:CDS 50.0%
CGATCTGAGGAGGCTAGAAA+TGG + chr5_4:17481901-17481920 Msa0841330:CDS 50.0%
ACTTGTCTGAGTGGCAGCAA+TGG - chr5_4:17481968-17481987 None:intergenic 50.0%
! AGTGGAGGAGATGCTTTGAG+AGG + chr5_4:17482009-17482028 Msa0841330:CDS 50.0%
TGCAATCTCGTGCCACAAGA+AGG - chr5_4:17482039-17482058 None:intergenic 50.0%
TCTTGTGGCACGAGATTGCA+TGG + chr5_4:17482039-17482058 Msa0841330:CDS 50.0%
ATGGTCTATGACGGCGTTTC+CGG + chr5_4:17482734-17482753 Msa0841330:intron 50.0%
ACCATGTCCTCCTTACGGAA+AGG + chr5_4:17482928-17482947 Msa0841330:intron 50.0%
TCCTTTCCGTAAGGAGGACA+TGG - chr5_4:17482932-17482951 None:intergenic 50.0%
!! GCAGGTACAGAAGCACTCAA+AGG - chr5_4:17483044-17483063 None:intergenic 50.0%
TTGAGTGCTTCTGTACCTGC+TGG + chr5_4:17483044-17483063 Msa0841330:CDS 50.0%
TGAGTGCTTCTGTACCTGCT+GGG + chr5_4:17483045-17483064 Msa0841330:CDS 50.0%
CAGTATCCCATTCAGCAAGG+CGG - chr5_4:17483127-17483146 None:intergenic 50.0%
CTGTTCCCAAGCTGATCAGT+AGG - chr5_4:17483443-17483462 None:intergenic 50.0%
! ACTGCGGAGCGTCAAAAACT+TGG + chr5_4:17483980-17483999 Msa0841330:three_prime_UTR 50.0%
ATTCCAAAGCTGCGTGACCA+GGG - chr5_4:17484014-17484033 None:intergenic 50.0%
AATTCCAAAGCTGCGTGACC+AGG - chr5_4:17484015-17484034 None:intergenic 50.0%
!! TGAATGGTACGCTCTAGGGA+AGG - chr5_4:17484211-17484230 None:intergenic 50.0%
TTCCCTAGAGCGTACCATTC+AGG + chr5_4:17484210-17484229 Msa0841330:three_prime_UTR 50.0%
AGCCTGAATGGTACGCTCTA+GGG - chr5_4:17484215-17484234 None:intergenic 50.0%
AAGCCTGAATGGTACGCTCT+AGG - chr5_4:17484216-17484235 None:intergenic 50.0%
CATCCTGTATGCTTACGCCA+TGG + chr5_4:17484729-17484748 Msa0841330:three_prime_UTR 50.0%
GCACTGAGCAAAGCTTACCA+TGG - chr5_4:17484749-17484768 None:intergenic 50.0%
TGTGTTTGCTCCCACAGATG+AGG - chr5_4:17485575-17485594 None:intergenic 50.0%
CATCATTGCTCCACTGCATG+AGG + chr5_4:17486025-17486044 Msa0841330:intron 50.0%
!! GAGGGGCATTGTGAAGAACT+TGG + chr5_4:17486095-17486114 Msa0841330:three_prime_UTR 50.0%
ACCTGACATCAAGCCCATAG+TGG + chr5_4:17486205-17486224 Msa0841330:three_prime_UTR 50.0%
TCCACTATGGGCTTGATGTC+AGG - chr5_4:17486209-17486228 None:intergenic 50.0%
AAGATCACCACCGAAGAGAG+AGG + chr5_4:17486693-17486712 Msa0841330:three_prime_UTR 50.0%
TCGCTTTGGCCCAATCTCAA+TGG - chr5_4:17486747-17486766 None:intergenic 50.0%
CCTTGGACTTTGAGTCGCTT+TGG - chr5_4:17486761-17486780 None:intergenic 50.0%
CCAAAGCGACTCAAAGTCCA+AGG + chr5_4:17486758-17486777 Msa0841330:three_prime_UTR 50.0%
TGCCCAAAAATGAAGGGCCT+TGG - chr5_4:17486778-17486797 None:intergenic 50.0%
TGCAGGCAAGCCCTAACATT+TGG + chr5_4:17487080-17487099 Msa0841330:three_prime_UTR 50.0%
GCAGGCAAGCCCTAACATTT+GGG + chr5_4:17487081-17487100 Msa0841330:three_prime_UTR 50.0%
GTGCAGACTGCCCAAATGTT+AGG - chr5_4:17487094-17487113 None:intergenic 50.0%
AACATTTGGGCAGTCTGCAC+GGG + chr5_4:17487094-17487113 Msa0841330:three_prime_UTR 50.0%
GTGGTGATCCTTAGGTTCTC+TGG + chr5_4:17487116-17487135 Msa0841330:three_prime_UTR 50.0%
TGATCCTTAGGTTCTCTGGC+CGG + chr5_4:17487120-17487139 Msa0841330:three_prime_UTR 50.0%
GCGAAGTAGGAAAAACACCC+CGG - chr5_4:17487142-17487161 None:intergenic 50.0%
! GGGTGTTTTTCCTACTTCGC+TGG + chr5_4:17487142-17487161 Msa0841330:three_prime_UTR 50.0%
TCTATATTCCGCGCCACCGT+AGG + chr5_4:17480424-17480443 Msa0841330:five_prime_UTR 55.0%
!! TTCAATCGGAGCACCGTGAC+CGG - chr5_4:17480453-17480472 None:intergenic 55.0%
ACGAGGGTGATACGGCGTTA+CGG - chr5_4:17480532-17480551 None:intergenic 55.0%
CGCCGTATCACCCTCGTATA+CGG + chr5_4:17480535-17480554 Msa0841330:five_prime_UTR 55.0%
CGCCGTATACGAGGGTGATA+CGG - chr5_4:17480540-17480559 None:intergenic 55.0%
TCGAACGACGCCGTATACGA+GGG - chr5_4:17480548-17480567 None:intergenic 55.0%
TACGGCGTCGTTCGAGAATG+TGG + chr5_4:17480553-17480572 Msa0841330:five_prime_UTR 55.0%
GTTGGCAGCACTTGTCTGAG+TGG - chr5_4:17481977-17481996 None:intergenic 55.0%
GAGTGCTTCTGTACCTGCTG+GGG + chr5_4:17483046-17483065 Msa0841330:CDS 55.0%
GCACGAAGATATTGCAGCGC+TGG + chr5_4:17483305-17483324 Msa0841330:intron 55.0%
TATCCCTGGTCACGCAGCTT+TGG + chr5_4:17484008-17484027 Msa0841330:three_prime_UTR 55.0%
CTGCTTGCAATAGCCCCAAG+AGG - chr5_4:17484405-17484424 None:intergenic 55.0%
CTCTTGGGGCTATTGCAAGC+AGG + chr5_4:17484403-17484422 Msa0841330:three_prime_UTR 55.0%
GGAGCAGAGGAACAGTCATG+AGG - chr5_4:17485948-17485967 None:intergenic 55.0%
TGATTCAGGAAGCAGCCGCA+AGG + chr5_4:17487022-17487041 Msa0841330:three_prime_UTR 55.0%
GATCCTTAGGTTCTCTGGCC+GGG + chr5_4:17487121-17487140 Msa0841330:three_prime_UTR 55.0%
ATCCTTAGGTTCTCTGGCCG+GGG + chr5_4:17487122-17487141 Msa0841330:three_prime_UTR 55.0%
TCAGGTTCACCCAGCGAAGT+AGG - chr5_4:17487155-17487174 None:intergenic 55.0%
!!! CCTAGTTTTGCAGGTCGGTC+AGG - chr5_4:17487173-17487192 None:intergenic 55.0%
CCTGACCGACCTGCAAAACT+AGG + chr5_4:17487170-17487189 Msa0841330:three_prime_UTR 55.0%
TCCCCGTGGTTGCTCCTACA+CGG + chr5_4:17480494-17480513 Msa0841330:five_prime_UTR 60.0%
ACGCCGTGTAGGAGCAACCA+CGG - chr5_4:17480500-17480519 None:intergenic 60.0%
TGGTTGCTCCTACACGGCGT+TGG + chr5_4:17480500-17480519 Msa0841330:five_prime_UTR 60.0%
GGAGAGATCCAACGCCGTGT+AGG - chr5_4:17480511-17480530 None:intergenic 60.0%
CTCGAACGACGCCGTATACG+AGG - chr5_4:17480549-17480568 None:intergenic 60.0%
AGCCTCTCCGCCTTGCTGAA+TGG + chr5_4:17483117-17483136 Msa0841330:CDS 60.0%
GCCTCTCCGCCTTGCTGAAT+GGG + chr5_4:17483118-17483137 Msa0841330:CDS 60.0%
TCCCATTCAGCAAGGCGGAG+AGG - chr5_4:17483122-17483141 None:intergenic 60.0%
GCTGCAACCTCTCTCTTCGG+TGG - chr5_4:17486703-17486722 None:intergenic 60.0%
ATTTGGGCAGTCTGCACGGG+TGG + chr5_4:17487097-17487116 Msa0841330:three_prime_UTR 60.0%
CTGCACGGGTGGTGATCCTT+AGG + chr5_4:17487108-17487127 Msa0841330:three_prime_UTR 60.0%
CCACCGTAGGAAGCCGGTCA+CGG + chr5_4:17480437-17480456 Msa0841330:five_prime_UTR 65.0%
! GCACCGTGACCGGCTTCCTA+CGG - chr5_4:17480443-17480462 None:intergenic 65.0%
GCCGTGTAGGAGCAACCACG+GGG - chr5_4:17480498-17480517 None:intergenic 65.0%
CGCCGTGTAGGAGCAACCAC+GGG - chr5_4:17480499-17480518 None:intergenic 65.0%
AAGGCGGAGAGGCTGCACTC+TGG - chr5_4:17483111-17483130 None:intergenic 65.0%
CACCCCGGCCAGAGAACCTA+AGG - chr5_4:17487127-17487146 None:intergenic 65.0%
TCCGCGCCACCGTAGGAAGC+CGG + chr5_4:17480431-17480450 Msa0841330:five_prime_UTR 70.0%
! ACCGGCTTCCTACGGTGGCG+CGG - chr5_4:17480435-17480454 None:intergenic 70.0%
! CCGTGACCGGCTTCCTACGG+TGG - chr5_4:17480440-17480459 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 17480296 17487391 17480296 ID=Msa0841330;Name=Msa0841330
chr5_4 mRNA 17480296 17487391 17480296 ID=Msa0841330-mRNA-1;Parent=Msa0841330;Name=Msa0841330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=434|0.81|0.91|1|0.72|0.58|12|2131|240
chr5_4 exon 17480296 17480732 17480296 ID=Msa0841330-mRNA-1:exon:7431;Parent=Msa0841330-mRNA-1
chr5_4 exon 17481880 17482225 17481880 ID=Msa0841330-mRNA-1:exon:7432;Parent=Msa0841330-mRNA-1
chr5_4 exon 17483021 17483177 17483021 ID=Msa0841330-mRNA-1:exon:7433;Parent=Msa0841330-mRNA-1
chr5_4 exon 17483322 17483478 17483322 ID=Msa0841330-mRNA-1:exon:7434;Parent=Msa0841330-mRNA-1
chr5_4 exon 17483638 17483691 17483638 ID=Msa0841330-mRNA-1:exon:7435;Parent=Msa0841330-mRNA-1
chr5_4 exon 17483966 17484243 17483966 ID=Msa0841330-mRNA-1:exon:7436;Parent=Msa0841330-mRNA-1
chr5_4 exon 17484355 17484750 17484355 ID=Msa0841330-mRNA-1:exon:7437;Parent=Msa0841330-mRNA-1
chr5_4 exon 17485556 17485813 17485556 ID=Msa0841330-mRNA-1:exon:7438;Parent=Msa0841330-mRNA-1
chr5_4 exon 17485835 17485974 17485835 ID=Msa0841330-mRNA-1:exon:7439;Parent=Msa0841330-mRNA-1
chr5_4 exon 17486092 17486340 17486092 ID=Msa0841330-mRNA-1:exon:7440;Parent=Msa0841330-mRNA-1
chr5_4 exon 17486476 17486867 17486476 ID=Msa0841330-mRNA-1:exon:7441;Parent=Msa0841330-mRNA-1
chr5_4 exon 17486968 17487391 17486968 ID=Msa0841330-mRNA-1:exon:7442;Parent=Msa0841330-mRNA-1
chr5_4 five_prime_UTR 17480296 17480729 17480296 ID=Msa0841330-mRNA-1:five_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4 CDS 17480730 17480732 17480730 ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4 CDS 17481880 17482225 17481880 ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4 CDS 17483021 17483177 17483021 ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4 CDS 17483322 17483478 17483322 ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4 CDS 17483638 17483691 17483638 ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4 CDS 17483966 17483971 17483966 ID=Msa0841330-mRNA-1:cds;Parent=Msa0841330-mRNA-1
chr5_4 three_prime_UTR 17483972 17484243 17483972 ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4 three_prime_UTR 17484355 17484750 17484355 ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4 three_prime_UTR 17485556 17485813 17485556 ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4 three_prime_UTR 17485835 17485974 17485835 ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4 three_prime_UTR 17486092 17486340 17486092 ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4 three_prime_UTR 17486476 17486867 17486476 ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
chr5_4 three_prime_UTR 17486968 17487391 17486968 ID=Msa0841330-mRNA-1:three_prime_utr;Parent=Msa0841330-mRNA-1
Gene Sequence

>Msa0841330

ATGGTAGAAGGAGGTAGAGTACGACGATCTGAGGAGGCTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAAGCCATTGCTGCCACTCAGACAAGTGCTGCCAACTTGATGAATAGAAGTGGAGGAGATGCTTTGAGAGGTTCACCTTCTTGTGGCACGAGATTGCATGGTAATCCAGATGTGTTTTTCAAGCGGAAGGTGGATAAGTTTGATACAAGCGATTTGGATTGGACTGATAAAATTCCAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAAGATCCTTTGGTTTATTTGCAGAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTGTTTCGCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAGGAGCAACCTGGATTCAAGTTTACAACCAGAGTGCAGCCTCTCCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGCGCTGGATGTCTTCCTGCCACTTACTTGGAAAAGGAATTTTGGCAGGAAATTGGTCGTGGGAAAATGGATACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCAACTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCCCGGTTGCCCAAATCAACTTTGCGTCTATTGGAAACATCAATTCCGCATTAA
Protein sequence

>Msa0841330

MVEGGRVRRSEEARNGLEFLKRKRLQRAQAIAATQTSAANLMNRSGGDALRGSPSCGTRLHGNPDVFFKRKVDKFDTSDLDWTDKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEQPGFKFTTRVQPLRLAEWDTEDKVTFFMSGSAGCLPATYLEKEFWQEIGRGKMDTVEYACDVDGSAFSTSPTDQLGNSKWNLKKLSRLPKSTLRLLETSIPH*