Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843610 | GFB75010.1 | 62.000 | 50 | 19 | 0 | 15 | 64 | 25 | 74 | 1.30e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843610 | sp|O22176|WRK15_ARATH | 79.412 | 34 | 7 | 0 | 15 | 48 | 227 | 260 | 6.23e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843610 | A0A6P4CVH9 | 88.235 | 34 | 4 | 0 | 15 | 48 | 273 | 306 | 8.72e-14 | 76.3 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0843610 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843610 | MtrunA17_Chr4g0053281 | 88.235 | 34 | 4 | 0 | 15 | 48 | 253 | 286 | 3.02e-16 | 72.8 |
| Msa0843610 | MtrunA17_Chr1g0184691 | 79.412 | 34 | 7 | 0 | 15 | 48 | 280 | 313 | 3.62e-15 | 69.7 |
| Msa0843610 | MtrunA17_Chr5g0401821 | 79.412 | 34 | 7 | 0 | 15 | 48 | 186 | 219 | 1.15e-13 | 65.1 |
| Msa0843610 | MtrunA17_Chr1g0147881 | 76.471 | 34 | 8 | 0 | 15 | 48 | 249 | 282 | 1.00e-12 | 62.8 |
| Msa0843610 | MtrunA17_Chr3g0139021 | 64.706 | 34 | 12 | 0 | 15 | 48 | 301 | 334 | 1.35e-11 | 59.7 |
| Msa0843610 | MtrunA17_Chr7g0228941 | 64.706 | 34 | 12 | 0 | 15 | 48 | 39 | 72 | 4.80e-11 | 55.8 |
| Msa0843610 | MtrunA17_Chr4g0071521 | 70.588 | 34 | 10 | 0 | 15 | 48 | 232 | 265 | 4.85e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843610 | AT2G23320.2 | 75.000 | 36 | 9 | 0 | 15 | 50 | 227 | 262 | 1.05e-15 | 70.9 |
| Msa0843610 | AT2G23320.1 | 79.412 | 34 | 7 | 0 | 15 | 48 | 227 | 260 | 6.33e-15 | 69.3 |
| Msa0843610 | AT2G30590.1 | 79.412 | 34 | 7 | 0 | 15 | 48 | 300 | 333 | 1.61e-14 | 68.6 |
| Msa0843610 | AT4G31550.3 | 79.412 | 34 | 7 | 0 | 15 | 48 | 232 | 265 | 4.18e-14 | 66.6 |
| Msa0843610 | AT4G31550.1 | 79.412 | 34 | 7 | 0 | 15 | 48 | 233 | 266 | 5.42e-14 | 66.6 |
| Msa0843610 | AT4G31550.2 | 79.412 | 34 | 7 | 0 | 15 | 48 | 232 | 265 | 5.50e-14 | 66.6 |
| Msa0843610 | AT4G24240.1 | 73.529 | 34 | 9 | 0 | 15 | 48 | 268 | 301 | 1.04e-13 | 66.2 |
| Msa0843610 | AT2G24570.1 | 76.471 | 34 | 8 | 0 | 15 | 48 | 230 | 263 | 1.16e-13 | 65.9 |
| Msa0843610 | AT3G04670.2 | 75.000 | 36 | 9 | 0 | 15 | 50 | 249 | 284 | 1.71e-13 | 65.1 |
| Msa0843610 | AT5G28650.1 | 76.471 | 34 | 8 | 0 | 15 | 48 | 249 | 282 | 3.97e-13 | 64.3 |
| Msa0843610 | AT3G04670.1 | 76.471 | 34 | 8 | 0 | 15 | 48 | 249 | 282 | 4.25e-13 | 64.3 |
| Msa0843610 | AT4G24240.2 | 73.529 | 34 | 9 | 0 | 15 | 48 | 268 | 301 | 9.65e-13 | 63.2 |
Find 171 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCTTGGGTTATCATTAT+TGG | 0.178237 | 5_4:-21313407 | Msa0843610:five_prime_UTR |
| TTATAAATACATTGTAATTA+TGG | 0.184778 | 5_4:-21310314 | Msa0843610:CDS |
| TTCCACCAGATGATTATTAT+TGG | 0.189553 | 5_4:-21311076 | Msa0843610:CDS |
| ACCAATGGTTTACTCATAAA+AGG | 0.218452 | 5_4:-21313284 | Msa0843610:five_prime_UTR |
| CTTCATAGAGTTTGTCCTTT+TGG | 0.219222 | 5_4:-21310397 | Msa0843610:CDS |
| ATTGAAAGCATGGGTATTAA+TGG | 0.226541 | 5_4:-21311366 | Msa0843610:five_prime_UTR |
| TCTTTCCCTTTCTTCCCTTT+TGG | 0.229130 | 5_4:-21314485 | Msa0843610:five_prime_UTR |
| TTTGGCAGCTTATATTCTTT+TGG | 0.235851 | 5_4:-21310379 | Msa0843610:CDS |
| TTTCTTATACCTCATCAATT+TGG | 0.239993 | 5_4:-21313254 | Msa0843610:five_prime_UTR |
| ATATATGAAAGGGGACTTAT+TGG | 0.258099 | 5_4:-21311984 | Msa0843610:five_prime_UTR |
| TTAGAAGTGGAAATGGCTTT+TGG | 0.280880 | 5_4:-21310472 | Msa0843610:CDS |
| TATAAATACATTGTAATTAT+GGG | 0.288262 | 5_4:-21310313 | Msa0843610:CDS |
| CAAGAGATGTCGTAACCTTT+TGG | 0.295235 | 5_4:-21312111 | Msa0843610:five_prime_UTR |
| CCTATATGGTTATTATTGAT+TGG | 0.310831 | 5_4:-21313022 | Msa0843610:five_prime_UTR |
| TTTATTTGACAGCAACAAAA+TGG | 0.314554 | 5_4:-21311435 | Msa0843610:five_prime_UTR |
| GGAATGTGGCGTTGGATGCT+TGG | 0.319419 | 5_4:-21313103 | Msa0843610:five_prime_UTR |
| ATGGCATCTGATCTAAATTC+AGG | 0.325194 | 5_4:-21311416 | Msa0843610:five_prime_UTR |
| TGGATGCTGCTCCAGCTCCT+TGG | 0.332993 | 5_4:-21313421 | Msa0843610:five_prime_UTR |
| TCAGAAGGGTTCCTGCAATT+AGG | 0.334437 | 5_4:-21311115 | Msa0843610:CDS |
| GGATGAGGTGAACCTCTAAT+AGG | 0.338953 | 5_4:+21311035 | None:intergenic |
| CTTTAGTTAAGAATCCTGTT+TGG | 0.346250 | 5_4:-21312055 | Msa0843610:five_prime_UTR |
| GAATGTGGCGTTGGATGCTT+GGG | 0.346751 | 5_4:-21313102 | Msa0843610:five_prime_UTR |
| CCGATATTGTAAATTCTTAA+CGG | 0.351554 | 5_4:+21314179 | None:intergenic |
| CTTCTGAAATAGATAGAATA+TGG | 0.354364 | 5_4:+21311237 | None:intergenic |
| AGCATCCAACGCCACATTCC+GGG | 0.360876 | 5_4:+21313106 | None:intergenic |
| GCTTCCCCTGCTAAGCTTAG+AGG | 0.360930 | 5_4:-21313320 | Msa0843610:five_prime_UTR |
| ATGAATATTACTGCTCCTTC+AGG | 0.365000 | 5_4:+21311576 | None:intergenic |
| AAGCTAAGGTTGACACCCTT+GGG | 0.367308 | 5_4:-21312010 | Msa0843610:five_prime_UTR |
| GTTTGAAGGGTTTGATTCTT+CGG | 0.368683 | 5_4:-21314369 | Msa0843610:five_prime_UTR |
| TTTAGTTAAGAATCCTGTTT+GGG | 0.370210 | 5_4:-21312054 | Msa0843610:five_prime_UTR |
| CCGTTAAGAATTTACAATAT+CGG | 0.370611 | 5_4:-21314179 | Msa0843610:five_prime_UTR |
| GGAAAACATTATGCTAGAAA+TGG | 0.372846 | 5_4:-21311613 | Msa0843610:five_prime_UTR |
| GGAAAGAGAAAATTTCTATA+AGG | 0.376042 | 5_4:+21314501 | None:intergenic |
| CCCTCCCTGAGTCACCTATA+TGG | 0.377147 | 5_4:-21313036 | Msa0843610:five_prime_UTR |
| GGATGCTGCTCCAGCTCCTT+GGG | 0.377313 | 5_4:-21313420 | Msa0843610:five_prime_UTR |
| CTATATGGTTATTATTGATT+GGG | 0.379890 | 5_4:-21313021 | Msa0843610:five_prime_UTR |
| GCCATCTTCAACCTAATTGC+AGG | 0.389310 | 5_4:+21311104 | None:intergenic |
| TGAATTAAATCATAGGTTCT+TGG | 0.392219 | 5_4:+21311829 | None:intergenic |
| TTCACCTCCTTTGATGATGA+AGG | 0.394927 | 5_4:+21314576 | None:intergenic |
| TTGCAGGAACCCTTCTGAAA+TGG | 0.403005 | 5_4:+21311120 | None:intergenic |
| AAGCATCCAACGCCACATTC+CGG | 0.406170 | 5_4:+21313105 | None:intergenic |
| GATTGAATTAGAAGTGGAAA+TGG | 0.407889 | 5_4:-21310479 | Msa0843610:CDS |
| GAAGCTTCTGAGATATATAA+AGG | 0.411075 | 5_4:+21313338 | None:intergenic |
| TTTGGACATGAATGCTAACT+TGG | 0.414974 | 5_4:-21312093 | Msa0843610:five_prime_UTR |
| TTGAAAGCATGGGTATTAAT+GGG | 0.417741 | 5_4:-21311365 | Msa0843610:five_prime_UTR |
| CATCAAAGGAGGTGAAAATC+TGG | 0.418249 | 5_4:-21314569 | Msa0843610:five_prime_UTR |
| TACCATAATCGGATACCAAA+AGG | 0.419034 | 5_4:+21314470 | None:intergenic |
| GTCAGTAGTACCCGCGTCAT+TGG | 0.421263 | 5_4:+21312715 | None:intergenic |
| TTATTGGAACATATCATGAT+TGG | 0.422417 | 5_4:-21311968 | Msa0843610:intron |
| CCAATCAATAATAACCATAT+AGG | 0.424388 | 5_4:+21313022 | None:intergenic |
| TCGAGTAATCATCCGCATAA+TGG | 0.427163 | 5_4:-21311182 | Msa0843610:five_prime_UTR |
| AAGGTGTTATTGTTGTTTGA+AGG | 0.433443 | 5_4:-21314383 | Msa0843610:five_prime_UTR |
| CAAGCTAAGGTTGACACCCT+TGG | 0.440165 | 5_4:-21312011 | Msa0843610:five_prime_UTR |
| TGAAGTGATGAGGAGGCTCT+TGG | 0.442286 | 5_4:-21312943 | Msa0843610:five_prime_UTR |
| AATGCTCCTCTAAGCTTAGC+AGG | 0.442573 | 5_4:+21313314 | None:intergenic |
| CGGATACCAAAAGGGAAGAA+AGG | 0.448032 | 5_4:+21314479 | None:intergenic |
| TAGAAGGTTGCCATTGGATA+CGG | 0.448873 | 5_4:-21314246 | Msa0843610:five_prime_UTR |
| CTATGAAGAGAAACAAATAA+AGG | 0.449118 | 5_4:+21310412 | None:intergenic |
| ATAACGAGCTCTGGAAGAAA+AGG | 0.449425 | 5_4:-21312172 | Msa0843610:five_prime_UTR |
| GGAGCATTGGTTTGCACCAA+TGG | 0.450034 | 5_4:-21313299 | Msa0843610:five_prime_UTR |
| TTGGTGGTTAGTTTAACTTC+AGG | 0.450545 | 5_4:-21312415 | Msa0843610:intron |
| TATTCAGCCTTTACAATGGC+AGG | 0.452318 | 5_4:-21311795 | Msa0843610:intron |
| CATGGTCAGAAACCTATTAG+AGG | 0.454796 | 5_4:-21311047 | Msa0843610:CDS |
| CGCATATGCTACAAAGTTGA+GGG | 0.455217 | 5_4:+21310250 | None:intergenic |
| TTTCTCCAATAATAATCATC+TGG | 0.456747 | 5_4:+21311071 | None:intergenic |
| AGCTATGAAATTAACATTGG+TGG | 0.458187 | 5_4:-21312431 | Msa0843610:five_prime_UTR |
| TGCTAAGCTTAGAGGAGCAT+TGG | 0.460045 | 5_4:-21313312 | Msa0843610:five_prime_UTR |
| CAAAAGGTTACGACATCTCT+TGG | 0.461507 | 5_4:+21312112 | None:intergenic |
| ACCACATTCATAACCCAAAC+AGG | 0.462762 | 5_4:+21312041 | None:intergenic |
| TTTCAAGACTCACTATTTGT+CGG | 0.463514 | 5_4:+21312581 | None:intergenic |
| TACATCGATGATATCGTAGA+AGG | 0.472422 | 5_4:-21314262 | Msa0843610:five_prime_UTR |
| TCCTGCAATTAGGTTGAAGA+TGG | 0.486437 | 5_4:-21311105 | Msa0843610:CDS |
| GAAGTGATGAGGAGGCTCTT+GGG | 0.487154 | 5_4:-21312942 | Msa0843610:five_prime_UTR |
| GATATATAAAGGAGCACTCA+TGG | 0.489403 | 5_4:+21313349 | None:intergenic |
| ATTGACATGGGCACTATTGA+AGG | 0.489867 | 5_4:-21312221 | Msa0843610:five_prime_UTR |
| AAAGGTGGCATGCTTCCTCT+TGG | 0.491442 | 5_4:-21311260 | Msa0843610:five_prime_UTR |
| GTATTAATGGGAATAGTGGT+TGG | 0.491829 | 5_4:-21311353 | Msa0843610:five_prime_UTR |
| ATCAGCATGAATTAAATCAT+AGG | 0.494853 | 5_4:+21311822 | None:intergenic |
| TAGATTGATTGAATTAGAAG+TGG | 0.496563 | 5_4:-21310485 | Msa0843610:CDS |
| GATGATTATCACTACAATCA+TGG | 0.496766 | 5_4:-21312993 | Msa0843610:five_prime_UTR |
| ATTCAAAAGATAACGAGCTC+TGG | 0.496901 | 5_4:-21312181 | Msa0843610:five_prime_UTR |
| AGGTGTTATTGTTGTTTGAA+GGG | 0.497748 | 5_4:-21314382 | Msa0843610:five_prime_UTR |
| CCAAGCTTACCCACGGGCAC+CGG | 0.499746 | 5_4:+21314146 | None:intergenic |
| AGAAGGTTGCCATTGGATAC+GGG | 0.501992 | 5_4:-21314245 | Msa0843610:five_prime_UTR |
| CTTGAATTAGCATGCAAAGA+TGG | 0.502423 | 5_4:-21312463 | Msa0843610:five_prime_UTR |
| ACCATAATCGGATACCAAAA+GGG | 0.503339 | 5_4:+21314471 | None:intergenic |
| AATAACCATATAGGTGACTC+AGG | 0.504195 | 5_4:+21313031 | None:intergenic |
| AGTTAGCATTCATGTCCAAA+AGG | 0.505599 | 5_4:+21312096 | None:intergenic |
| GGATACCAAAAGGGAAGAAA+GGG | 0.506741 | 5_4:+21314480 | None:intergenic |
| GGTGTTCATTGCAGGTGCAT+TGG | 0.507830 | 5_4:-21313441 | Msa0843610:intron |
| AAAGAATATAAGCTGCCAAA+AGG | 0.509353 | 5_4:+21310382 | None:intergenic |
| TGGCATCTGATCTAAATTCA+GGG | 0.510805 | 5_4:-21311415 | Msa0843610:five_prime_UTR |
| ATGGGTATTAATGGGAATAG+TGG | 0.513957 | 5_4:-21311357 | Msa0843610:five_prime_UTR |
| CCTTGGGGCAATATATGAAA+GGG | 0.514583 | 5_4:-21311994 | Msa0843610:five_prime_UTR |
| TCACCTCCTTTGATGATGAA+GGG | 0.519184 | 5_4:+21314577 | None:intergenic |
| AAACACATCGCCGGTGCCCG+TGG | 0.521082 | 5_4:-21314156 | Msa0843610:five_prime_UTR |
| TGTATTACCTGCCATTGTAA+AGG | 0.524043 | 5_4:+21311788 | None:intergenic |
| CAAGGGTGTCAACCTTAGCT+TGG | 0.527186 | 5_4:+21312012 | None:intergenic |
| GAAACACACGTTGTTGAAGA+AGG | 0.530360 | 5_4:+21314599 | None:intergenic |
| TGTGGCATTATAATTTGTCA+TGG | 0.531907 | 5_4:-21310352 | Msa0843610:CDS |
| CCCTTGGGGCAATATATGAA+AGG | 0.532642 | 5_4:-21311995 | Msa0843610:five_prime_UTR |
| GTGACGACATCCATTTCAGA+AGG | 0.533565 | 5_4:-21311130 | Msa0843610:CDS |
| GTTCATTATAATCATCCTTG+TGG | 0.534067 | 5_4:-21311327 | Msa0843610:five_prime_UTR |
| CCGCATATGCTACAAAGTTG+AGG | 0.535007 | 5_4:+21310249 | None:intergenic |
| CCTTTCATATATTGCCCCAA+GGG | 0.543250 | 5_4:+21311995 | None:intergenic |
| GTGTTTCCCTTCATCATCAA+AGG | 0.543286 | 5_4:-21314583 | Msa0843610:five_prime_UTR |
| CAAAGAAGAAACTGCTGGTG+TGG | 0.547119 | 5_4:-21312288 | Msa0843610:five_prime_UTR |
| ATAATGATAACCCAAGGAGC+TGG | 0.547230 | 5_4:+21313410 | None:intergenic |
| CCCTTTCATATATTGCCCCA+AGG | 0.547336 | 5_4:+21311994 | None:intergenic |
| AAGAAGTCTAGAAGAGGCAA+AGG | 0.549177 | 5_4:-21311278 | Msa0843610:five_prime_UTR |
| AGGCTCCCGGAATGTGGCGT+TGG | 0.549721 | 5_4:-21313111 | Msa0843610:five_prime_UTR |
| TTGTAAATTCTTAACGGCGC+CGG | 0.550869 | 5_4:+21314185 | None:intergenic |
| AATACAAACTGTATGATAGC+GGG | 0.556699 | 5_4:+21313067 | None:intergenic |
| AAGTCTAGAAGAGGCAAAGG+TGG | 0.556702 | 5_4:-21311275 | Msa0843610:five_prime_UTR |
| CTCCAATAATAATCATCTGG+TGG | 0.557843 | 5_4:+21311074 | None:intergenic |
| GTGTCAACCTTAGCTTGGAC+AGG | 0.558536 | 5_4:+21312017 | None:intergenic |
| TTAAGAAAGAAGTCTAGAAG+AGG | 0.564848 | 5_4:-21311284 | Msa0843610:five_prime_UTR |
| ATATCGTAGAAGGTTGCCAT+TGG | 0.565994 | 5_4:-21314252 | Msa0843610:five_prime_UTR |
| CAAAGCTATGAAATTAACAT+TGG | 0.569103 | 5_4:-21312434 | Msa0843610:five_prime_UTR |
| TCCTGTTTGGGTTATGAATG+TGG | 0.571291 | 5_4:-21312042 | Msa0843610:five_prime_UTR |
| ATAGTGCCCATGTCAATCCT+TGG | 0.571310 | 5_4:+21312227 | None:intergenic |
| ACATTATGCTAGAAATGGAT+AGG | 0.576129 | 5_4:-21311608 | Msa0843610:five_prime_UTR |
| TTGACATGGGCACTATTGAA+GGG | 0.577375 | 5_4:-21312220 | Msa0843610:five_prime_UTR |
| CTATTCTACCCCGTATCCAA+TGG | 0.578142 | 5_4:+21314236 | None:intergenic |
| GACATGAATGCTAACTTGGG+TGG | 0.579779 | 5_4:-21312089 | Msa0843610:five_prime_UTR |
| ATGCTCCTCTAAGCTTAGCA+GGG | 0.582570 | 5_4:+21313315 | None:intergenic |
| CATCAATTTGGCATTTACCA+AGG | 0.582784 | 5_4:-21313242 | Msa0843610:intron |
| ATTTGAAAGTACCTTGGATG+AGG | 0.582942 | 5_4:+21311020 | None:intergenic |
| CTCAAGAAAATGAAGTGATG+AGG | 0.584643 | 5_4:-21312953 | Msa0843610:five_prime_UTR |
| TTGGACATGAATGCTAACTT+GGG | 0.585636 | 5_4:-21312092 | Msa0843610:five_prime_UTR |
| AAGAAAATGAAGTGATGAGG+AGG | 0.587073 | 5_4:-21312950 | Msa0843610:five_prime_UTR |
| TTCTACGATATCATCGATGT+AGG | 0.594753 | 5_4:+21314264 | None:intergenic |
| GATACGGGGTAGAATAGTAC+CGG | 0.596917 | 5_4:-21314230 | Msa0843610:five_prime_UTR |
| GGGTAGAATAGTACCGGAAA+CGG | 0.600198 | 5_4:-21314224 | Msa0843610:five_prime_UTR |
| AAACACACGTTGTTGAAGAA+GGG | 0.602274 | 5_4:+21314600 | None:intergenic |
| AGAAACAAATAAAGGTAGTG+AGG | 0.603327 | 5_4:+21310420 | None:intergenic |
| TCAAACAAAGAAGAAACTGC+TGG | 0.603785 | 5_4:-21312293 | Msa0843610:five_prime_UTR |
| GATTATTATTGGAGAAAACA+TGG | 0.605457 | 5_4:-21311065 | Msa0843610:CDS |
| GATAGGATTCTGACACCTGA+AGG | 0.607093 | 5_4:-21311591 | Msa0843610:five_prime_UTR |
| TTAGAGGTTCACCTCATCCA+AGG | 0.609149 | 5_4:-21311031 | Msa0843610:intron |
| GTGCCCATGTCAATCCTTGG+TGG | 0.610205 | 5_4:+21312230 | None:intergenic |
| TGTGGTTCCTGTCCAAGCTA+AGG | 0.610288 | 5_4:-21312024 | Msa0843610:five_prime_UTR |
| ACCATATAGGTGACTCAGGG+AGG | 0.618384 | 5_4:+21313035 | None:intergenic |
| AGTTCCACCAAGGATTGACA+TGG | 0.622575 | 5_4:-21312234 | Msa0843610:five_prime_UTR |
| TGACGACATCCATTTCAGAA+GGG | 0.626078 | 5_4:-21311129 | Msa0843610:CDS |
| TGCTAATACTCCAATGACGC+GGG | 0.629072 | 5_4:-21312725 | Msa0843610:intron |
| TAATACAAACTGTATGATAG+CGG | 0.629414 | 5_4:+21313066 | None:intergenic |
| CCTCAACTTTGTAGCATATG+CGG | 0.632868 | 5_4:-21310249 | Msa0843610:three_prime_UTR |
| CTCATAAAAGAACCATTATG+CGG | 0.634977 | 5_4:+21311170 | None:intergenic |
| CTTCCAATAATGATAACCCA+AGG | 0.637106 | 5_4:+21313404 | None:intergenic |
| TGGTAAATGCCAAATTGATG+AGG | 0.639358 | 5_4:+21313245 | None:intergenic |
| CCATATAGGTGACTCAGGGA+GGG | 0.640631 | 5_4:+21313036 | None:intergenic |
| TTTCCCTTCATCATCAAAGG+AGG | 0.641083 | 5_4:-21314580 | Msa0843610:five_prime_UTR |
| GCATATGCTACAAAGTTGAG+GGG | 0.661649 | 5_4:+21310251 | None:intergenic |
| TCAGTATTCAGCCTTTACAA+TGG | 0.662728 | 5_4:-21311799 | Msa0843610:five_prime_UTR |
| GAAGGTTGCCATTGGATACG+GGG | 0.663795 | 5_4:-21314244 | Msa0843610:five_prime_UTR |
| AATGGTTTACTCATAAAAGG+TGG | 0.664096 | 5_4:-21313281 | Msa0843610:five_prime_UTR |
| GACTTCAGTCAGTTCCACCA+AGG | 0.664174 | 5_4:-21312244 | Msa0843610:five_prime_UTR |
| TGCTCCTCTAAGCTTAGCAG+GGG | 0.664527 | 5_4:+21313316 | None:intergenic |
| TTGCTAATACTCCAATGACG+CGG | 0.665094 | 5_4:-21312726 | Msa0843610:five_prime_UTR |
| ATAGATAGAATATGGCCAAG+AGG | 0.665254 | 5_4:+21311245 | None:intergenic |
| TGACATGGGCACTATTGAAG+GGG | 0.666460 | 5_4:-21312219 | Msa0843610:five_prime_UTR |
| CAATATCGGAAACACATCGC+CGG | 0.668636 | 5_4:-21314165 | Msa0843610:five_prime_UTR |
| ATAACCATATAGGTGACTCA+GGG | 0.669923 | 5_4:+21313032 | None:intergenic |
| CTTGGGGCAATATATGAAAG+GGG | 0.671327 | 5_4:-21311993 | Msa0843610:five_prime_UTR |
| GGAACTGACTGAAGTCTCTG+TGG | 0.678874 | 5_4:+21312251 | None:intergenic |
| AGCTAAGGTTGACACCCTTG+GGG | 0.687897 | 5_4:-21312009 | Msa0843610:five_prime_UTR |
| GACATATTGATAGCACCACA+AGG | 0.695167 | 5_4:+21311312 | None:intergenic |
| CATATGCTACAAAGTTGAGG+GGG | 0.707123 | 5_4:+21310252 | None:intergenic |
| GTTCCACCAAGGATTGACAT+GGG | 0.712330 | 5_4:-21312233 | Msa0843610:five_prime_UTR |
| AATGTGGCGTTGGATGCTTG+GGG | 0.735150 | 5_4:-21313101 | Msa0843610:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTAAATAAAAAAAATC+AGG | + | chr5_4:21310432-21310451 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTATTTAATTGA+TGG | - | chr5_4:21310432-21310451 | Msa0843610:CDS | 10.0% |
| !!! | TTTAATTTTCTTAATTTCTT+AGG | - | chr5_4:21312989-21313008 | Msa0843610:five_prime_UTR | 10.0% |
| !!! | TTATTTCAAGTAATTTATAT+AGG | - | chr5_4:21313111-21313130 | Msa0843610:five_prime_UTR | 10.0% |
| !! | AATTTATATAGGATAAATTT+AGG | - | chr5_4:21313122-21313141 | Msa0843610:intron | 10.0% |
| !!! | CATTGTTATTTTTAATATAT+AGG | - | chr5_4:21313150-21313169 | Msa0843610:intron | 10.0% |
| !! | TTATAAATACATTGTAATTA+TGG | - | chr5_4:21314548-21314567 | Msa0843610:five_prime_UTR | 10.0% |
| !! | TATAAATACATTGTAATTAT+GGG | - | chr5_4:21314549-21314568 | Msa0843610:five_prime_UTR | 10.0% |
| !! | ACATTGAAAAATACAAAATT+AGG | + | chr5_4:21310895-21310914 | None:intergenic | 15.0% |
| !!! | ATAAGAATTTTTCAAATAAG+AGG | - | chr5_4:21311148-21311167 | Msa0843610:CDS | 15.0% |
| !!! | TAAGAATTTTTCAAATAAGA+GGG | - | chr5_4:21311149-21311168 | Msa0843610:CDS | 15.0% |
| !!! | TTTTCATCAAAAATAATTAC+TGG | - | chr5_4:21311193-21311212 | Msa0843610:five_prime_UTR | 15.0% |
| !!! | AGACTATTCAAAATTTTAAA+TGG | - | chr5_4:21314009-21314028 | Msa0843610:intron | 15.0% |
| !! | TTATGAATGATTATGATTAT+TGG | - | chr5_4:21314041-21314060 | Msa0843610:intron | 15.0% |
| !!! | ATTTTTTATTTGACTTTTCT+TGG | - | chr5_4:21314066-21314085 | Msa0843610:intron | 15.0% |
| !!! | TTTTTTATTTGACTTTTCTT+GGG | - | chr5_4:21314067-21314086 | Msa0843610:intron | 15.0% |
| !!! | AAAAGAGTTTTTACCATAAT+CGG | + | chr5_4:21310406-21310425 | None:intergenic | 20.0% |
| !! | ATAAAAATTTCACCCAAAAT+TGG | - | chr5_4:21311217-21311236 | Msa0843610:five_prime_UTR | 20.0% |
| !!! | TTTGTTGAATAACCAATTTT+GGG | + | chr5_4:21311232-21311251 | None:intergenic | 20.0% |
| !!! | ATTTGTTGAATAACCAATTT+TGG | + | chr5_4:21311233-21311252 | None:intergenic | 20.0% |
| !!! | TCATCAATTTGATTTGTTTT+AGG | - | chr5_4:21311731-21311750 | Msa0843610:intron | 20.0% |
| !!! | CTATATGGTTATTATTGATT+GGG | - | chr5_4:21311841-21311860 | Msa0843610:five_prime_UTR | 20.0% |
| !!! | ATGTTTTAATCTCTAATGAA+TGG | - | chr5_4:21312966-21312985 | Msa0843610:five_prime_UTR | 20.0% |
| !!! | ATTGTTTGTGTAAATTTTCT+TGG | - | chr5_4:21313327-21313346 | Msa0843610:five_prime_UTR | 20.0% |
| !! | TCAAATAAATCTGCAAATAT+CGG | + | chr5_4:21313416-21313435 | None:intergenic | 20.0% |
| !!! | TCAAAGAAAACAAATGTTTT+TGG | - | chr5_4:21313473-21313492 | Msa0843610:intron | 20.0% |
| !! | TAAATAGGTTCATATACATA+GGG | + | chr5_4:21313902-21313921 | None:intergenic | 20.0% |
| !! | ATAAATAGGTTCATATACAT+AGG | + | chr5_4:21313903-21313922 | None:intergenic | 20.0% |
| !! | CATAATCATTCATAAACATT+TGG | + | chr5_4:21314036-21314055 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCTATTTTTGTTG+AGG | - | chr5_4:21314249-21314268 | Msa0843610:five_prime_UTR | 20.0% |
| !! | ATAAAAATGAAAGAGAAAGA+AGG | + | chr5_4:21314284-21314303 | None:intergenic | 20.0% |
| !! | GAATAAATATCTCGAAAAAT+AGG | + | chr5_4:21314310-21314329 | None:intergenic | 20.0% |
| !! | AAAATACAGAGAGATAAATT+TGG | + | chr5_4:21314351-21314370 | None:intergenic | 20.0% |
| ! | GGAAAGAGAAAATTTCTATA+AGG | + | chr5_4:21310364-21310383 | None:intergenic | 25.0% |
| ! | CCGATATTGTAAATTCTTAA+CGG | + | chr5_4:21310686-21310705 | None:intergenic | 25.0% |
| ! | CCGTTAAGAATTTACAATAT+CGG | - | chr5_4:21310683-21310702 | Msa0843610:intron | 25.0% |
| !!! | AAGTTGTTTTTATGATCCTA+AGG | - | chr5_4:21310749-21310768 | Msa0843610:intron | 25.0% |
| !!! | AGTTGTTTTTATGATCCTAA+GGG | - | chr5_4:21310750-21310769 | Msa0843610:intron | 25.0% |
| !!! | TTGGTGTTTTTATGATCATA+AGG | - | chr5_4:21310800-21310819 | Msa0843610:intron | 25.0% |
| !! | TTTTCAATGTCTTTGATTGT+TGG | - | chr5_4:21310905-21310924 | Msa0843610:intron | 25.0% |
| ! | TATGAACAAAAACTGCATTA+TGG | + | chr5_4:21310946-21310965 | None:intergenic | 25.0% |
| !! | TTGATGAATAACAAGTTTTC+AGG | - | chr5_4:21311268-21311287 | Msa0843610:five_prime_UTR | 25.0% |
| ! | AATTGGAAAATTGGTGAATT+TGG | - | chr5_4:21311306-21311325 | Msa0843610:five_prime_UTR | 25.0% |
| ! | TGAGTAACAATGATTTCATT+TGG | - | chr5_4:21311341-21311360 | Msa0843610:five_prime_UTR | 25.0% |
| ! | GAGTAACAATGATTTCATTT+GGG | - | chr5_4:21311342-21311361 | Msa0843610:five_prime_UTR | 25.0% |
| !!! | AGATTTTTGTTTAAGCTATG+TGG | - | chr5_4:21311400-21311419 | Msa0843610:five_prime_UTR | 25.0% |
| !! | ATTATTGGAAGACTTTTAGT+TGG | - | chr5_4:21311470-21311489 | Msa0843610:intron | 25.0% |
| ! | TTTCTTATACCTCATCAATT+TGG | - | chr5_4:21311608-21311627 | Msa0843610:five_prime_UTR | 25.0% |
| ! | AATTTCAATCAAACATACCT+TGG | + | chr5_4:21311640-21311659 | None:intergenic | 25.0% |
| ! | GTATGTTTGATTGAAATTTG+AGG | - | chr5_4:21311642-21311661 | Msa0843610:intron | 25.0% |
| ! | TAATACAAACTGTATGATAG+CGG | + | chr5_4:21311799-21311818 | None:intergenic | 25.0% |
| ! | CCAATCAATAATAACCATAT+AGG | + | chr5_4:21311843-21311862 | None:intergenic | 25.0% |
| ! | CCTATATGGTTATTATTGAT+TGG | - | chr5_4:21311840-21311859 | Msa0843610:five_prime_UTR | 25.0% |
| !!! | GGAATAGTTTTTGTTTACTT+TGG | - | chr5_4:21312011-21312030 | Msa0843610:five_prime_UTR | 25.0% |
| !! | AAAGCAATTTTCAGAAACTT+CGG | - | chr5_4:21312091-21312110 | Msa0843610:five_prime_UTR | 25.0% |
| !! | TACCATTTTATATGCAATGT+AGG | - | chr5_4:21312245-21312264 | Msa0843610:five_prime_UTR | 25.0% |
| ! | CAAAGCTATGAAATTAACAT+TGG | - | chr5_4:21312428-21312447 | Msa0843610:five_prime_UTR | 25.0% |
| ! | TTTAGTTAAGAATCCTGTTT+GGG | - | chr5_4:21312808-21312827 | Msa0843610:five_prime_UTR | 25.0% |
| ! | TTATTGGAACATATCATGAT+TGG | - | chr5_4:21312894-21312913 | Msa0843610:intron | 25.0% |
| ! | CAAATTAAACAATGCACAAA+TGG | + | chr5_4:21312931-21312950 | None:intergenic | 25.0% |
| ! | TGAATTAAATCATAGGTTCT+TGG | + | chr5_4:21313036-21313055 | None:intergenic | 25.0% |
| ! | ATCAGCATGAATTAAATCAT+AGG | + | chr5_4:21313043-21313062 | None:intergenic | 25.0% |
| ! | TTTATTTGACAGCAACAAAA+TGG | - | chr5_4:21313427-21313446 | Msa0843610:five_prime_UTR | 25.0% |
| !!! | CTTCTGAAATAGATAGAATA+TGG | + | chr5_4:21313628-21313647 | None:intergenic | 25.0% |
| ! | TTTCTCCAATAATAATCATC+TGG | + | chr5_4:21313794-21313813 | None:intergenic | 25.0% |
| ! | GATTATTATTGGAGAAAACA+TGG | - | chr5_4:21313797-21313816 | Msa0843610:intron | 25.0% |
| !!! | TAATTGATTTGAAAGTACCT+TGG | + | chr5_4:21313851-21313870 | None:intergenic | 25.0% |
| ! | AAATAGGTTCATATACATAG+GGG | + | chr5_4:21313901-21313920 | None:intergenic | 25.0% |
| !!! | TGCTGATTTTGTGTAATTTT+TGG | - | chr5_4:21314137-21314156 | Msa0843610:intron | 25.0% |
| ! | TAGATTGATTGAATTAGAAG+TGG | - | chr5_4:21314377-21314396 | Msa0843610:five_prime_UTR | 25.0% |
| ! | CTATGAAGAGAAACAAATAA+AGG | + | chr5_4:21314453-21314472 | None:intergenic | 25.0% |
| !! | TTATATTCTTTTGGCAATTG+TGG | - | chr5_4:21314492-21314511 | Msa0843610:five_prime_UTR | 25.0% |
| !!! | TGGTATCATGCTTTTGATTT+TGG | - | chr5_4:21310313-21310332 | Msa0843610:CDS | 30.0% |
| !!! | ATGCTTTTGATTTTGGTGTT+AGG | - | chr5_4:21310320-21310339 | Msa0843610:CDS | 30.0% |
| ! | TTGATTGCATGTTTTCAGAA+AGG | - | chr5_4:21310460-21310479 | Msa0843610:CDS | 30.0% |
| !! | AAGGTGTTATTGTTGTTTGA+AGG | - | chr5_4:21310479-21310498 | Msa0843610:CDS | 30.0% |
| !! | AGGTGTTATTGTTGTTTGAA+GGG | - | chr5_4:21310480-21310499 | Msa0843610:CDS | 30.0% |
| !! | TTAGTGATTTTGTTGTCTGA+AGG | - | chr5_4:21310564-21310583 | Msa0843610:intron | 30.0% |
| !! | TAGTGATTTTGTTGTCTGAA+GGG | - | chr5_4:21310565-21310584 | Msa0843610:intron | 30.0% |
| !!! | ATCCTAAGGGTTTTGATTTT+CGG | - | chr5_4:21310763-21310782 | Msa0843610:intron | 30.0% |
| ! | TTGATAATAGCTCAGCTTTA+AGG | - | chr5_4:21310846-21310865 | Msa0843610:intron | 30.0% |
| ! | TGATAATAGCTCAGCTTTAA+GGG | - | chr5_4:21310847-21310866 | Msa0843610:intron | 30.0% |
| ! | TCAGATTTTATGTTTATCCC+TGG | - | chr5_4:21311020-21311039 | Msa0843610:intron | 30.0% |
| AATACACAGCATAAAATCCA+GGG | + | chr5_4:21311040-21311059 | None:intergenic | 30.0% | |
| AAATACACAGCATAAAATCC+AGG | + | chr5_4:21311041-21311060 | None:intergenic | 30.0% | |
| TCCTTCAGAAATTGGAAAAT+TGG | - | chr5_4:21311297-21311316 | Msa0843610:five_prime_UTR | 30.0% | |
| ! | ACCAATTTTCCAATTTCTGA+AGG | + | chr5_4:21311301-21311320 | None:intergenic | 30.0% |
| !! | GAAGCTTCTGAGATATATAA+AGG | + | chr5_4:21311527-21311546 | None:intergenic | 30.0% |
| ACCAATGGTTTACTCATAAA+AGG | - | chr5_4:21311578-21311597 | Msa0843610:intron | 30.0% | |
| ! | ACCTTTTATGAGTAAACCAT+TGG | + | chr5_4:21311582-21311601 | None:intergenic | 30.0% |
| AATGGTTTACTCATAAAAGG+TGG | - | chr5_4:21311581-21311600 | Msa0843610:intron | 30.0% | |
| AATACAAACTGTATGATAGC+GGG | + | chr5_4:21311798-21311817 | None:intergenic | 30.0% | |
| GATGATTATCACTACAATCA+TGG | - | chr5_4:21311869-21311888 | Msa0843610:intron | 30.0% | |
| ! | TTTTCATCTGCAATCAATGT+AGG | - | chr5_4:21311990-21312009 | Msa0843610:five_prime_UTR | 30.0% |
| CTCCTACATTGCATATAAAA+TGG | + | chr5_4:21312250-21312269 | None:intergenic | 30.0% | |
| TTTCAAGACTCACTATTTGT+CGG | + | chr5_4:21312284-21312303 | None:intergenic | 30.0% | |
| AAATAAGAAATGAAAGCAGC+AGG | + | chr5_4:21312325-21312344 | None:intergenic | 30.0% | |
| AGCTATGAAATTAACATTGG+TGG | - | chr5_4:21312431-21312450 | Msa0843610:five_prime_UTR | 30.0% | |
| !! | GTTGATTTCTTTTTCCAGAA+AGG | + | chr5_4:21312475-21312494 | None:intergenic | 30.0% |
| CTTTAGTTAAGAATCCTGTT+TGG | - | chr5_4:21312807-21312826 | Msa0843610:five_prime_UTR | 30.0% | |
| ATATATGAAAGGGGACTTAT+TGG | - | chr5_4:21312878-21312897 | Msa0843610:intron | 30.0% | |
| !! | TGCTCTTTGTGTGTTTTATT+AGG | - | chr5_4:21313218-21313237 | Msa0843610:intron | 30.0% |
| !! | GTGTTTTATTAGGTGTGAAT+TGG | - | chr5_4:21313228-21313247 | Msa0843610:intron | 30.0% |
| GGAAAACATTATGCTAGAAA+TGG | - | chr5_4:21313249-21313268 | Msa0843610:five_prime_UTR | 30.0% | |
| ACATTATGCTAGAAATGGAT+AGG | - | chr5_4:21313254-21313273 | Msa0843610:five_prime_UTR | 30.0% | |
| ! | ATTTTCTTGGTTGAGAAGTT+TGG | - | chr5_4:21313340-21313359 | Msa0843610:five_prime_UTR | 30.0% |
| ATCGGAGTTGAAAAATTAGA+AGG | + | chr5_4:21313398-21313417 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTGGATTGAAAGCA+TGG | - | chr5_4:21313486-21313505 | Msa0843610:intron | 30.0% |
| !!! | TGTTTTTGGATTGAAAGCAT+GGG | - | chr5_4:21313487-21313506 | Msa0843610:intron | 30.0% |
| ! | ATTGAAAGCATGGGTATTAA+TGG | - | chr5_4:21313496-21313515 | Msa0843610:intron | 30.0% |
| ! | TTGAAAGCATGGGTATTAAT+GGG | - | chr5_4:21313497-21313516 | Msa0843610:intron | 30.0% |
| GTTCATTATAATCATCCTTG+TGG | - | chr5_4:21313535-21313554 | Msa0843610:intron | 30.0% | |
| TTAAGAAAGAAGTCTAGAAG+AGG | - | chr5_4:21313578-21313597 | Msa0843610:intron | 30.0% | |
| CTCATAAAAGAACCATTATG+CGG | + | chr5_4:21313695-21313714 | None:intergenic | 30.0% | |
| TTCCACCAGATGATTATTAT+TGG | - | chr5_4:21313786-21313805 | Msa0843610:intron | 30.0% | |
| GATTGAATTAGAAGTGGAAA+TGG | - | chr5_4:21314383-21314402 | Msa0843610:five_prime_UTR | 30.0% | |
| AGAAACAAATAAAGGTAGTG+AGG | + | chr5_4:21314445-21314464 | None:intergenic | 30.0% | |
| AAAGAATATAAGCTGCCAAA+AGG | + | chr5_4:21314483-21314502 | None:intergenic | 30.0% | |
| ! | TTTGGCAGCTTATATTCTTT+TGG | - | chr5_4:21314483-21314502 | Msa0843610:five_prime_UTR | 30.0% |
| ! | TGTGGCATTATAATTTGTCA+TGG | - | chr5_4:21314510-21314529 | Msa0843610:five_prime_UTR | 30.0% |
| AAACACACGTTGTTGAAGAA+GGG | + | chr5_4:21310265-21310284 | None:intergenic | 35.0% | |
| ACCATAATCGGATACCAAAA+GGG | + | chr5_4:21310394-21310413 | None:intergenic | 35.0% | |
| TACCATAATCGGATACCAAA+AGG | + | chr5_4:21310395-21310414 | None:intergenic | 35.0% | |
| GTTTGAAGGGTTTGATTCTT+CGG | - | chr5_4:21310493-21310512 | Msa0843610:intron | 35.0% | |
| !!! | GTTTTGTTGTTTAGCGATTC+TGG | - | chr5_4:21310520-21310539 | Msa0843610:intron | 35.0% |
| TTCTACGATATCATCGATGT+AGG | + | chr5_4:21310601-21310620 | None:intergenic | 35.0% | |
| TACATCGATGATATCGTAGA+AGG | - | chr5_4:21310600-21310619 | Msa0843610:intron | 35.0% | |
| !!! | TTTTTTCTTTACGCCGTTTC+CGG | + | chr5_4:21310654-21310673 | None:intergenic | 35.0% |
| AACCGAAAATCAAAACCCTT+AGG | + | chr5_4:21310768-21310787 | None:intergenic | 35.0% | |
| !!! | AGGGTTTTGATTTTCGGTTT+TGG | - | chr5_4:21310769-21310788 | Msa0843610:intron | 35.0% |
| !!! | TTCGGTTTTGGTTTGTTCTT+TGG | - | chr5_4:21310781-21310800 | Msa0843610:intron | 35.0% |
| GGTAAAGTTCCTTCAGAAAT+TGG | - | chr5_4:21311289-21311308 | Msa0843610:five_prime_UTR | 35.0% | |
| CTTCCAATAATGATAACCCA+AGG | + | chr5_4:21311461-21311480 | None:intergenic | 35.0% | |
| !! | GGAAGACTTTTAGTTGGTTT+AGG | - | chr5_4:21311476-21311495 | Msa0843610:intron | 35.0% |
| !! | CTTTTAGTTGGTTTAGGAGT+TGG | - | chr5_4:21311482-21311501 | Msa0843610:intron | 35.0% |
| !! | GATATATAAAGGAGCACTCA+TGG | + | chr5_4:21311516-21311535 | None:intergenic | 35.0% |
| TGGTAAATGCCAAATTGATG+AGG | + | chr5_4:21311620-21311639 | None:intergenic | 35.0% | |
| CATCAATTTGGCATTTACCA+AGG | - | chr5_4:21311620-21311639 | Msa0843610:five_prime_UTR | 35.0% | |
| !!! | TTTGATTTGTTTTAGGCTCC+CGG | - | chr5_4:21311738-21311757 | Msa0843610:intron | 35.0% |
| ATAACCATATAGGTGACTCA+GGG | + | chr5_4:21311833-21311852 | None:intergenic | 35.0% | |
| AATAACCATATAGGTGACTC+AGG | + | chr5_4:21311834-21311853 | None:intergenic | 35.0% | |
| CTCAAGAAAATGAAGTGATG+AGG | - | chr5_4:21311909-21311928 | Msa0843610:intron | 35.0% | |
| AAGAAAATGAAGTGATGAGG+AGG | - | chr5_4:21311912-21311931 | Msa0843610:intron | 35.0% | |
| ! | GGTTTGTTCTGTTTATAGTG+TGG | - | chr5_4:21312032-21312051 | Msa0843610:five_prime_UTR | 35.0% |
| TAGTGAGTCTTGAAAACCAA+TGG | - | chr5_4:21312289-21312308 | Msa0843610:five_prime_UTR | 35.0% | |
| !! | CATTCAATTTGTTGTCATCC+AGG | - | chr5_4:21312362-21312381 | Msa0843610:intron | 35.0% |
| CTTGAATTAGCATGCAAAGA+TGG | - | chr5_4:21312399-21312418 | Msa0843610:intron | 35.0% | |
| !! | TTGGTGGTTAGTTTAACTTC+AGG | - | chr5_4:21312447-21312466 | Msa0843610:five_prime_UTR | 35.0% |
| ! | TTTAACTTCAGGTTCCTTTC+TGG | - | chr5_4:21312458-21312477 | Msa0843610:five_prime_UTR | 35.0% |
| ! | TCTTCTTTGTTTGACACTTG+AGG | + | chr5_4:21312563-21312582 | None:intergenic | 35.0% |
| TCAAACAAAGAAGAAACTGC+TGG | - | chr5_4:21312569-21312588 | Msa0843610:intron | 35.0% | |
| ! | CTGGTGTGGTATTGAAAAAT+TGG | - | chr5_4:21312588-21312607 | Msa0843610:intron | 35.0% |
| ATTCAAAAGATAACGAGCTC+TGG | - | chr5_4:21312681-21312700 | Msa0843610:intron | 35.0% | |
| GAAAAAGTGAACAATCAGCT+TGG | - | chr5_4:21312725-21312744 | Msa0843610:intron | 35.0% | |
| AGTTAGCATTCATGTCCAAA+AGG | + | chr5_4:21312769-21312788 | None:intergenic | 35.0% | |
| TTTGGACATGAATGCTAACT+TGG | - | chr5_4:21312769-21312788 | Msa0843610:five_prime_UTR | 35.0% | |
| TTGGACATGAATGCTAACTT+GGG | - | chr5_4:21312770-21312789 | Msa0843610:five_prime_UTR | 35.0% | |
| TCAGTATTCAGCCTTTACAA+TGG | - | chr5_4:21313063-21313082 | Msa0843610:five_prime_UTR | 35.0% | |
| TGTATTACCTGCCATTGTAA+AGG | + | chr5_4:21313077-21313096 | None:intergenic | 35.0% | |
| ! | AAAACACACAAAGAGCACAT+TGG | + | chr5_4:21313215-21313234 | None:intergenic | 35.0% |
| ATGAATATTACTGCTCCTTC+AGG | + | chr5_4:21313289-21313308 | None:intergenic | 35.0% | |
| ATGGCATCTGATCTAAATTC+AGG | - | chr5_4:21313446-21313465 | Msa0843610:intron | 35.0% | |
| TGGCATCTGATCTAAATTCA+GGG | - | chr5_4:21313447-21313466 | Msa0843610:intron | 35.0% | |
| ATGGGTATTAATGGGAATAG+TGG | - | chr5_4:21313505-21313524 | Msa0843610:intron | 35.0% | |
| GTATTAATGGGAATAGTGGT+TGG | - | chr5_4:21313509-21313528 | Msa0843610:intron | 35.0% | |
| ATAGATAGAATATGGCCAAG+AGG | + | chr5_4:21313620-21313639 | None:intergenic | 35.0% | |
| CTCCAATAATAATCATCTGG+TGG | + | chr5_4:21313791-21313810 | None:intergenic | 35.0% | |
| !! | ATTTGAAAGTACCTTGGATG+AGG | + | chr5_4:21313845-21313864 | None:intergenic | 35.0% |
| !! | AATTTTTGGACCAATGACAG+AGG | - | chr5_4:21314151-21314170 | Msa0843610:intron | 35.0% |
| ! | TTAGAAGTGGAAATGGCTTT+TGG | - | chr5_4:21314390-21314409 | Msa0843610:five_prime_UTR | 35.0% |
| ! | CTTCATAGAGTTTGTCCTTT+TGG | - | chr5_4:21314465-21314484 | Msa0843610:five_prime_UTR | 35.0% |
| GAAACACACGTTGTTGAAGA+AGG | + | chr5_4:21310266-21310285 | None:intergenic | 40.0% | |
| GTGTTTCCCTTCATCATCAA+AGG | - | chr5_4:21310279-21310298 | Msa0843610:exon | 40.0% | |
| TTTCCCTTCATCATCAAAGG+AGG | - | chr5_4:21310282-21310301 | Msa0843610:exon | 40.0% | |
| !! | TCACCTCCTTTGATGATGAA+GGG | + | chr5_4:21310288-21310307 | None:intergenic | 40.0% |
| !! | TTCACCTCCTTTGATGATGA+AGG | + | chr5_4:21310289-21310308 | None:intergenic | 40.0% |
| CATCAAAGGAGGTGAAAATC+TGG | - | chr5_4:21310293-21310312 | Msa0843610:exon | 40.0% | |
| ! | TCTTTCCCTTTCTTCCCTTT+TGG | - | chr5_4:21310377-21310396 | Msa0843610:CDS | 40.0% |
| GGATACCAAAAGGGAAGAAA+GGG | + | chr5_4:21310385-21310404 | None:intergenic | 40.0% | |
| ! | TCCCTTTTGGTATCCGATTA+TGG | - | chr5_4:21310390-21310409 | Msa0843610:CDS | 40.0% |
| ATATCGTAGAAGGTTGCCAT+TGG | - | chr5_4:21310610-21310629 | Msa0843610:intron | 40.0% | |
| TAGAAGGTTGCCATTGGATA+CGG | - | chr5_4:21310616-21310635 | Msa0843610:intron | 40.0% | |
| GGAAACGGCGTAAAGAAAAA+AGG | - | chr5_4:21310653-21310672 | Msa0843610:intron | 40.0% | |
| TTGTAAATTCTTAACGGCGC+CGG | + | chr5_4:21310680-21310699 | None:intergenic | 40.0% | |
| ATAATGATAACCCAAGGAGC+TGG | + | chr5_4:21311455-21311474 | None:intergenic | 40.0% | |
| GCTCCTTGGGTTATCATTAT+TGG | - | chr5_4:21311455-21311474 | Msa0843610:intron | 40.0% | |
| TTGCTAATACTCCAATGACG+CGG | - | chr5_4:21312136-21312155 | Msa0843610:five_prime_UTR | 40.0% | |
| TTGTTTGACACTTGAGGAAC+AGG | + | chr5_4:21312557-21312576 | None:intergenic | 40.0% | |
| ATTGACATGGGCACTATTGA+AGG | - | chr5_4:21312641-21312660 | Msa0843610:intron | 40.0% | |
| TTGACATGGGCACTATTGAA+GGG | - | chr5_4:21312642-21312661 | Msa0843610:intron | 40.0% | |
| !! | ATAACGAGCTCTGGAAGAAA+AGG | - | chr5_4:21312690-21312709 | Msa0843610:intron | 40.0% |
| CAAAAGGTTACGACATCTCT+TGG | + | chr5_4:21312753-21312772 | None:intergenic | 40.0% | |
| ! | CAAGAGATGTCGTAACCTTT+TGG | - | chr5_4:21312751-21312770 | Msa0843610:five_prime_UTR | 40.0% |
| ! | TCCTGTTTGGGTTATGAATG+TGG | - | chr5_4:21312820-21312839 | Msa0843610:intron | 40.0% |
| ACCACATTCATAACCCAAAC+AGG | + | chr5_4:21312824-21312843 | None:intergenic | 40.0% | |
| CCTTTCATATATTGCCCCAA+GGG | + | chr5_4:21312870-21312889 | None:intergenic | 40.0% | |
| CCTTGGGGCAATATATGAAA+GGG | - | chr5_4:21312868-21312887 | Msa0843610:intron | 40.0% | |
| CTTGGGGCAATATATGAAAG+GGG | - | chr5_4:21312869-21312888 | Msa0843610:intron | 40.0% | |
| TATTCAGCCTTTACAATGGC+AGG | - | chr5_4:21313067-21313086 | Msa0843610:five_prime_UTR | 40.0% | |
| ! | GACATATTGATAGCACCACA+AGG | + | chr5_4:21313553-21313572 | None:intergenic | 40.0% |
| AAGAAGTCTAGAAGAGGCAA+AGG | - | chr5_4:21313584-21313603 | Msa0843610:intron | 40.0% | |
| TCGAGTAATCATCCGCATAA+TGG | - | chr5_4:21313680-21313699 | Msa0843610:intron | 40.0% | |
| TGACGACATCCATTTCAGAA+GGG | - | chr5_4:21313733-21313752 | Msa0843610:intron | 40.0% | |
| !! | TCCTGCAATTAGGTTGAAGA+TGG | - | chr5_4:21313757-21313776 | Msa0843610:intron | 40.0% |
| CATGGTCAGAAACCTATTAG+AGG | - | chr5_4:21313815-21313834 | Msa0843610:intron | 40.0% | |
| TGATGAATCTTGTGAGTGAG+TGG | - | chr5_4:21314114-21314133 | Msa0843610:intron | 40.0% | |
| CTTGTAGTATCCTCTGTCAT+TGG | + | chr5_4:21314164-21314183 | None:intergenic | 40.0% | |
| TCTCTACATGCTTTCTTGCT+GGG | + | chr5_4:21314207-21314226 | None:intergenic | 40.0% | |
| TGAGGGGGTTGCATATAAAT+AGG | + | chr5_4:21314598-21314617 | None:intergenic | 40.0% | |
| CATATGCTACAAAGTTGAGG+GGG | + | chr5_4:21314613-21314632 | None:intergenic | 40.0% | |
| GCATATGCTACAAAGTTGAG+GGG | + | chr5_4:21314614-21314633 | None:intergenic | 40.0% | |
| CGCATATGCTACAAAGTTGA+GGG | + | chr5_4:21314615-21314634 | None:intergenic | 40.0% | |
| CCTCAACTTTGTAGCATATG+CGG | - | chr5_4:21314613-21314632 | Msa0843610:five_prime_UTR | 40.0% | |
| CGGATACCAAAAGGGAAGAA+AGG | + | chr5_4:21310386-21310405 | None:intergenic | 45.0% | |
| AGAAGGTTGCCATTGGATAC+GGG | - | chr5_4:21310617-21310636 | Msa0843610:intron | 45.0% | |
| CTATTCTACCCCGTATCCAA+TGG | + | chr5_4:21310629-21310648 | None:intergenic | 45.0% | |
| GATACGGGGTAGAATAGTAC+CGG | - | chr5_4:21310632-21310651 | Msa0843610:intron | 45.0% | |
| ! | GGGTAGAATAGTACCGGAAA+CGG | - | chr5_4:21310638-21310657 | Msa0843610:intron | 45.0% |
| CGGCGTAAAGAAAAAAGGAC+CGG | - | chr5_4:21310658-21310677 | Msa0843610:intron | 45.0% | |
| CAATATCGGAAACACATCGC+CGG | - | chr5_4:21310697-21310716 | Msa0843610:intron | 45.0% | |
| CAAAAACCAAGCTTACCCAC+GGG | + | chr5_4:21310725-21310744 | None:intergenic | 45.0% | |
| GCAAAAACCAAGCTTACCCA+CGG | + | chr5_4:21310726-21310745 | None:intergenic | 45.0% | |
| AGCTATGTGGTGTTCATTGC+AGG | - | chr5_4:21311413-21311432 | Msa0843610:five_prime_UTR | 45.0% | |
| ATGCTCCTCTAAGCTTAGCA+GGG | + | chr5_4:21311550-21311569 | None:intergenic | 45.0% | |
| AATGCTCCTCTAAGCTTAGC+AGG | + | chr5_4:21311551-21311570 | None:intergenic | 45.0% | |
| ! | TGCTAAGCTTAGAGGAGCAT+TGG | - | chr5_4:21311550-21311569 | Msa0843610:intron | 45.0% |
| TGCTAATACTCCAATGACGC+GGG | - | chr5_4:21312137-21312156 | Msa0843610:five_prime_UTR | 45.0% | |
| CAAGCTGAAGTTCTTTCACC+TGG | + | chr5_4:21312383-21312402 | None:intergenic | 45.0% | |
| CAAAGAAGAAACTGCTGGTG+TGG | - | chr5_4:21312574-21312593 | Msa0843610:intron | 45.0% | |
| AGTTCCACCAAGGATTGACA+TGG | - | chr5_4:21312628-21312647 | Msa0843610:intron | 45.0% | |
| GTTCCACCAAGGATTGACAT+GGG | - | chr5_4:21312629-21312648 | Msa0843610:intron | 45.0% | |
| ATAGTGCCCATGTCAATCCT+TGG | + | chr5_4:21312638-21312657 | None:intergenic | 45.0% | |
| TGACATGGGCACTATTGAAG+GGG | - | chr5_4:21312643-21312662 | Msa0843610:intron | 45.0% | |
| GACATGAATGCTAACTTGGG+TGG | - | chr5_4:21312773-21312792 | Msa0843610:five_prime_UTR | 45.0% | |
| AAGCTAAGGTTGACACCCTT+GGG | - | chr5_4:21312852-21312871 | Msa0843610:intron | 45.0% | |
| CCCTTGGGGCAATATATGAA+AGG | - | chr5_4:21312867-21312886 | Msa0843610:intron | 45.0% | |
| CCCTTTCATATATTGCCCCA+AGG | + | chr5_4:21312871-21312890 | None:intergenic | 45.0% | |
| GATAGGATTCTGACACCTGA+AGG | - | chr5_4:21313271-21313290 | Msa0843610:five_prime_UTR | 45.0% | |
| AAGTCTAGAAGAGGCAAAGG+TGG | - | chr5_4:21313587-21313606 | Msa0843610:intron | 45.0% | |
| GTGACGACATCCATTTCAGA+AGG | - | chr5_4:21313732-21313751 | Msa0843610:intron | 45.0% | |
| ! | TTGCAGGAACCCTTCTGAAA+TGG | + | chr5_4:21313745-21313764 | None:intergenic | 45.0% |
| TCAGAAGGGTTCCTGCAATT+AGG | - | chr5_4:21313747-21313766 | Msa0843610:intron | 45.0% | |
| GCCATCTTCAACCTAATTGC+AGG | + | chr5_4:21313761-21313780 | None:intergenic | 45.0% | |
| GGATGAGGTGAACCTCTAAT+AGG | + | chr5_4:21313830-21313849 | None:intergenic | 45.0% | |
| TTAGAGGTTCACCTCATCCA+AGG | - | chr5_4:21313831-21313850 | Msa0843610:intron | 45.0% | |
| CTCTCTACATGCTTTCTTGC+TGG | + | chr5_4:21314208-21314227 | None:intergenic | 45.0% | |
| CCGCATATGCTACAAAGTTG+AGG | + | chr5_4:21314616-21314635 | None:intergenic | 45.0% | |
| !! | AAAAATTGTATAAAATAAAT+AGG | + | chr5_4:21313917-21313936 | None:intergenic | 5.0% |
| GAAGGTTGCCATTGGATACG+GGG | - | chr5_4:21310618-21310637 | Msa0843610:intron | 50.0% | |
| GGTGTTCATTGCAGGTGCAT+TGG | - | chr5_4:21311421-21311440 | Msa0843610:five_prime_UTR | 50.0% | |
| TGCTCCTCTAAGCTTAGCAG+GGG | + | chr5_4:21311549-21311568 | None:intergenic | 50.0% | |
| !! | GGAGCATTGGTTTGCACCAA+TGG | - | chr5_4:21311563-21311582 | Msa0843610:intron | 50.0% |
| !! | TGTTTTAGGCTCCCGGAATG+TGG | - | chr5_4:21311745-21311764 | Msa0843610:intron | 50.0% |
| AAGCATCCAACGCCACATTC+CGG | + | chr5_4:21311760-21311779 | None:intergenic | 50.0% | |
| ! | GAATGTGGCGTTGGATGCTT+GGG | - | chr5_4:21311760-21311779 | Msa0843610:intron | 50.0% |
| ! | AATGTGGCGTTGGATGCTTG+GGG | - | chr5_4:21311761-21311780 | Msa0843610:intron | 50.0% |
| CCATATAGGTGACTCAGGGA+GGG | + | chr5_4:21311829-21311848 | None:intergenic | 50.0% | |
| ACCATATAGGTGACTCAGGG+AGG | + | chr5_4:21311830-21311849 | None:intergenic | 50.0% | |
| TGAAGTGATGAGGAGGCTCT+TGG | - | chr5_4:21311919-21311938 | Msa0843610:intron | 50.0% | |
| GAAGTGATGAGGAGGCTCTT+GGG | - | chr5_4:21311920-21311939 | Msa0843610:intron | 50.0% | |
| AGCAGGTGTCAATGCACCAT+TGG | + | chr5_4:21312308-21312327 | None:intergenic | 50.0% | |
| GGAACTGACTGAAGTCTCTG+TGG | + | chr5_4:21312614-21312633 | None:intergenic | 50.0% | |
| GACTTCAGTCAGTTCCACCA+AGG | - | chr5_4:21312618-21312637 | Msa0843610:intron | 50.0% | |
| TGTGGTTCCTGTCCAAGCTA+AGG | - | chr5_4:21312838-21312857 | Msa0843610:intron | 50.0% | |
| ! | GTGTCAACCTTAGCTTGGAC+AGG | + | chr5_4:21312848-21312867 | None:intergenic | 50.0% |
| !! | CAAGGGTGTCAACCTTAGCT+TGG | + | chr5_4:21312853-21312872 | None:intergenic | 50.0% |
| CAAGCTAAGGTTGACACCCT+TGG | - | chr5_4:21312851-21312870 | Msa0843610:intron | 50.0% | |
| AGCTAAGGTTGACACCCTTG+GGG | - | chr5_4:21312853-21312872 | Msa0843610:intron | 50.0% | |
| AAAGGTGGCATGCTTCCTCT+TGG | - | chr5_4:21313602-21313621 | Msa0843610:intron | 50.0% | |
| GCTTCCCCTGCTAAGCTTAG+AGG | - | chr5_4:21311542-21311561 | Msa0843610:intron | 55.0% | |
| AGCATCCAACGCCACATTCC+GGG | + | chr5_4:21311759-21311778 | None:intergenic | 55.0% | |
| ! | GGAATGTGGCGTTGGATGCT+TGG | - | chr5_4:21311759-21311778 | Msa0843610:intron | 55.0% |
| CCCTCCCTGAGTCACCTATA+TGG | - | chr5_4:21311826-21311845 | Msa0843610:five_prime_UTR | 55.0% | |
| GTCAGTAGTACCCGCGTCAT+TGG | + | chr5_4:21312150-21312169 | None:intergenic | 55.0% | |
| GTGCCCATGTCAATCCTTGG+TGG | + | chr5_4:21312635-21312654 | None:intergenic | 55.0% | |
| TGGATGCTGCTCCAGCTCCT+TGG | - | chr5_4:21311441-21311460 | Msa0843610:intron | 60.0% | |
| GGATGCTGCTCCAGCTCCTT+GGG | - | chr5_4:21311442-21311461 | Msa0843610:intron | 60.0% | |
| AAACACATCGCCGGTGCCCG+TGG | - | chr5_4:21310706-21310725 | Msa0843610:intron | 65.0% | |
| AACACATCGCCGGTGCCCGT+GGG | - | chr5_4:21310707-21310726 | Msa0843610:intron | 65.0% | |
| CCAAGCTTACCCACGGGCAC+CGG | + | chr5_4:21310719-21310738 | None:intergenic | 65.0% | |
| AGGCTCCCGGAATGTGGCGT+TGG | - | chr5_4:21311751-21311770 | Msa0843610:intron | 65.0% | |
| CCGGTGCCCGTGGGTAAGCT+TGG | - | chr5_4:21310716-21310735 | Msa0843610:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 21310245 | 21314639 | 21310245 | ID=Msa0843610;Name=Msa0843610 |
| chr5_4 | mRNA | 21310245 | 21314639 | 21310245 | ID=Msa0843610-mRNA-1;Parent=Msa0843610;Name=Msa0843610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=1877|0.9|1|1|0.6|0.54|11|52|116 |
| chr5_4 | exon | 21310245 | 21310504 | 21310245 | ID=Msa0843610-mRNA-1:exon:8830;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21311032 | 21311458 | 21311032 | ID=Msa0843610-mRNA-1:exon:8829;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21311587 | 21311644 | 21311587 | ID=Msa0843610-mRNA-1:exon:8828;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21311796 | 21311873 | 21311796 | ID=Msa0843610-mRNA-1:exon:8827;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21311969 | 21312317 | 21311969 | ID=Msa0843610-mRNA-1:exon:8826;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21312416 | 21312500 | 21312416 | ID=Msa0843610-mRNA-1:exon:8825;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21312594 | 21312617 | 21312594 | ID=Msa0843610-mRNA-1:exon:8824;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21312726 | 21312834 | 21312726 | ID=Msa0843610-mRNA-1:exon:8823;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21312933 | 21313131 | 21312933 | ID=Msa0843610-mRNA-1:exon:8822;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21313243 | 21313449 | 21313243 | ID=Msa0843610-mRNA-1:exon:8821;Parent=Msa0843610-mRNA-1 |
| chr5_4 | exon | 21314156 | 21314639 | 21314156 | ID=Msa0843610-mRNA-1:exon:8820;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21314156 | 21314639 | 21314156 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21313243 | 21313449 | 21313243 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21312933 | 21313131 | 21312933 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21312726 | 21312834 | 21312726 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21312594 | 21312617 | 21312594 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21312416 | 21312500 | 21312416 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21311969 | 21312317 | 21311969 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21311796 | 21311873 | 21311796 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21311587 | 21311644 | 21311587 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | five_prime_UTR | 21311175 | 21311458 | 21311175 | ID=Msa0843610-mRNA-1:five_prime_utr;Parent=Msa0843610-mRNA-1 |
| chr5_4 | CDS | 21311032 | 21311174 | 21311032 | ID=Msa0843610-mRNA-1:cds;Parent=Msa0843610-mRNA-1 |
| chr5_4 | CDS | 21310297 | 21310504 | 21310297 | ID=Msa0843610-mRNA-1:cds;Parent=Msa0843610-mRNA-1 |
| chr5_4 | three_prime_UTR | 21310245 | 21310296 | 21310245 | ID=Msa0843610-mRNA-1:three_prime_utr;Parent=Msa0843610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
