Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843820 | XP_013449868.1 | 90.667 | 225 | 19 | 2 | 1 | 224 | 1 | 224 | 3.42e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843820 | sp|Q9M2J7|LBD29_ARATH | 79.661 | 118 | 23 | 1 | 8 | 124 | 11 | 128 | 2.51e-67 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843820 | A0A072U3H8 | 90.667 | 225 | 19 | 2 | 1 | 224 | 1 | 224 | 1.63e-143 | 409 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0843820 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843820 | MtrunA17_Chr7g0261031 | 90.667 | 225 | 19 | 2 | 1 | 224 | 1 | 224 | 3.14e-147 | 409 |
| Msa0843820 | MtrunA17_Chr1g0184271 | 68.063 | 191 | 52 | 4 | 8 | 195 | 12 | 196 | 2.42e-88 | 260 |
| Msa0843820 | MtrunA17_Chr7g0260971 | 70.755 | 106 | 31 | 0 | 3 | 108 | 9 | 114 | 4.17e-53 | 170 |
| Msa0843820 | MtrunA17_Chr5g0435641 | 67.308 | 104 | 34 | 0 | 2 | 105 | 1 | 104 | 5.32e-50 | 161 |
| Msa0843820 | MtrunA17_Chr8g0351701 | 69.903 | 103 | 31 | 0 | 8 | 110 | 23 | 125 | 1.41e-49 | 161 |
| Msa0843820 | MtrunA17_Chr8g0351721 | 60.656 | 122 | 45 | 2 | 5 | 123 | 15 | 136 | 1.21e-47 | 156 |
| Msa0843820 | MtrunA17_Chr1g0184281 | 67.308 | 104 | 34 | 0 | 5 | 108 | 12 | 115 | 4.02e-47 | 154 |
| Msa0843820 | MtrunA17_Chr7g0245871 | 69.697 | 99 | 30 | 0 | 8 | 106 | 27 | 125 | 8.84e-47 | 155 |
| Msa0843820 | MtrunA17_Chr6g0460951 | 56.000 | 125 | 53 | 1 | 7 | 129 | 39 | 163 | 4.84e-44 | 147 |
| Msa0843820 | MtrunA17_Chr7g0245861 | 66.667 | 93 | 29 | 2 | 5 | 95 | 9 | 101 | 9.03e-39 | 131 |
| Msa0843820 | MtrunA17_Chr3g0114061 | 44.966 | 149 | 78 | 3 | 1 | 149 | 1 | 145 | 4.21e-35 | 122 |
| Msa0843820 | MtrunA17_Chr5g0437571 | 45.963 | 161 | 71 | 6 | 4 | 163 | 2 | 147 | 2.34e-34 | 120 |
| Msa0843820 | MtrunA17_Chr2g0311601 | 57.000 | 100 | 42 | 1 | 4 | 103 | 9 | 107 | 1.02e-33 | 118 |
| Msa0843820 | MtrunA17_Chr4g0043421 | 52.830 | 106 | 49 | 1 | 4 | 109 | 11 | 115 | 5.37e-33 | 117 |
| Msa0843820 | MtrunA17_Chr5g0438091 | 50.000 | 120 | 54 | 3 | 7 | 122 | 38 | 155 | 4.46e-32 | 115 |
| Msa0843820 | MtrunA17_Chr7g0227511 | 55.102 | 98 | 43 | 1 | 5 | 102 | 8 | 104 | 8.30e-32 | 114 |
| Msa0843820 | MtrunA17_Chr5g0437401 | 49.541 | 109 | 53 | 2 | 5 | 113 | 8 | 114 | 8.36e-32 | 114 |
| Msa0843820 | MtrunA17_Chr3g0106101 | 42.308 | 156 | 82 | 5 | 4 | 158 | 2 | 150 | 1.28e-31 | 114 |
| Msa0843820 | MtrunA17_Chr4g0058651 | 56.250 | 96 | 41 | 1 | 7 | 102 | 10 | 104 | 1.82e-31 | 114 |
| Msa0843820 | MtrunA17_Chr3g0097221 | 50.000 | 114 | 56 | 1 | 2 | 115 | 1 | 113 | 2.01e-31 | 116 |
| Msa0843820 | MtrunA17_Chr3g0117121 | 55.208 | 96 | 42 | 1 | 7 | 102 | 9 | 103 | 9.05e-31 | 112 |
| Msa0843820 | MtrunA17_Chr3g0129071 | 50.000 | 112 | 53 | 2 | 7 | 117 | 46 | 155 | 3.91e-30 | 111 |
| Msa0843820 | MtrunA17_Chr3g0113891 | 48.544 | 103 | 52 | 1 | 5 | 107 | 11 | 112 | 5.52e-30 | 110 |
| Msa0843820 | MtrunA17_Chr6g0460941 | 56.818 | 88 | 38 | 0 | 8 | 95 | 7 | 94 | 6.97e-30 | 107 |
| Msa0843820 | MtrunA17_Chr5g0402611 | 53.922 | 102 | 46 | 1 | 1 | 102 | 1 | 101 | 7.22e-30 | 112 |
| Msa0843820 | MtrunA17_Chr6g0449641 | 52.041 | 98 | 46 | 1 | 5 | 102 | 6 | 102 | 2.08e-29 | 107 |
| Msa0843820 | MtrunA17_Chr3g0115431 | 48.182 | 110 | 56 | 1 | 1 | 110 | 2 | 110 | 4.68e-29 | 108 |
| Msa0843820 | MtrunA17_Chr6g0449651 | 48.571 | 105 | 50 | 2 | 1 | 102 | 57 | 160 | 2.25e-27 | 103 |
| Msa0843820 | MtrunA17_Chr4g0030001 | 52.041 | 98 | 45 | 2 | 7 | 103 | 23 | 119 | 1.95e-26 | 100 |
| Msa0843820 | MtrunA17_Chr1g0200201 | 50.526 | 95 | 46 | 1 | 9 | 103 | 73 | 166 | 1.09e-25 | 100 |
| Msa0843820 | MtrunA17_Chr5g0432451 | 55.340 | 103 | 43 | 2 | 7 | 108 | 42 | 142 | 2.02e-25 | 99.4 |
| Msa0843820 | MtrunA17_Chr8g0353981 | 54.023 | 87 | 39 | 1 | 2 | 88 | 1 | 86 | 3.21e-24 | 95.9 |
| Msa0843820 | MtrunA17_Chr7g0225111 | 41.818 | 110 | 63 | 1 | 7 | 116 | 4 | 112 | 4.90e-24 | 92.4 |
| Msa0843820 | MtrunA17_Chr5g0444351 | 43.519 | 108 | 60 | 1 | 9 | 116 | 6 | 112 | 6.06e-24 | 93.2 |
| Msa0843820 | MtrunA17_Chr8g0374591 | 39.423 | 104 | 62 | 1 | 8 | 111 | 8 | 110 | 4.84e-18 | 77.4 |
| Msa0843820 | MtrunA17_Chr8g0342351 | 36.275 | 102 | 64 | 1 | 9 | 110 | 13 | 113 | 2.47e-17 | 78.2 |
| Msa0843820 | MtrunA17_Chr8g0374601 | 36.538 | 104 | 65 | 1 | 8 | 111 | 26 | 128 | 2.59e-17 | 78.6 |
| Msa0843820 | MtrunA17_Chr4g0059901 | 36.190 | 105 | 66 | 1 | 4 | 108 | 6 | 109 | 7.32e-17 | 77.0 |
| Msa0843820 | MtrunA17_Chr4g0040831 | 35.185 | 108 | 69 | 1 | 4 | 111 | 11 | 117 | 1.35e-16 | 75.1 |
| Msa0843820 | MtrunA17_Chr2g0330201 | 33.645 | 107 | 70 | 1 | 4 | 110 | 15 | 120 | 4.72e-16 | 75.5 |
| Msa0843820 | MtrunA17_Chr8g0374581 | 35.294 | 102 | 64 | 2 | 8 | 108 | 8 | 108 | 1.03e-14 | 70.5 |
| Msa0843820 | MtrunA17_Chr6g0452691 | 38.636 | 88 | 52 | 2 | 2 | 88 | 3 | 89 | 1.62e-14 | 69.3 |
| Msa0843820 | MtrunA17_Chr6g0452671 | 34.906 | 106 | 65 | 2 | 9 | 111 | 12 | 116 | 1.32e-13 | 67.0 |
| Msa0843820 | MtrunA17_Chr6g0452661 | 38.824 | 85 | 48 | 3 | 9 | 90 | 10 | 93 | 3.12e-13 | 67.0 |
| Msa0843820 | MtrunA17_Chr2g0326041 | 54.167 | 48 | 21 | 1 | 7 | 54 | 32 | 78 | 3.70e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843820 | AT3G58190.1 | 79.661 | 118 | 23 | 1 | 8 | 124 | 11 | 128 | 2.55e-68 | 209 |
| Msa0843820 | AT2G42440.1 | 74.046 | 131 | 33 | 1 | 2 | 131 | 1 | 131 | 4.29e-67 | 207 |
| Msa0843820 | AT2G31310.1 | 63.194 | 144 | 49 | 2 | 2 | 144 | 1 | 141 | 8.21e-61 | 189 |
| Msa0843820 | AT2G42430.1 | 70.093 | 107 | 32 | 0 | 4 | 110 | 11 | 117 | 2.18e-51 | 167 |
| Msa0843820 | AT4G00210.1 | 60.000 | 120 | 48 | 0 | 3 | 122 | 6 | 125 | 2.80e-48 | 158 |
| Msa0843820 | AT5G06080.1 | 65.421 | 107 | 37 | 0 | 2 | 108 | 1 | 107 | 2.29e-47 | 154 |
| Msa0843820 | AT3G03760.1 | 68.627 | 102 | 32 | 0 | 7 | 108 | 50 | 151 | 3.15e-47 | 157 |
| Msa0843820 | AT2G45420.1 | 71.000 | 100 | 29 | 0 | 11 | 110 | 40 | 139 | 8.26e-47 | 155 |
| Msa0843820 | AT4G00220.1 | 69.000 | 100 | 31 | 0 | 11 | 110 | 20 | 119 | 1.08e-44 | 149 |
| Msa0843820 | AT2G45410.1 | 60.870 | 115 | 43 | 1 | 11 | 123 | 19 | 133 | 3.19e-43 | 144 |
| Msa0843820 | AT2G30130.1 | 50.000 | 118 | 57 | 2 | 2 | 118 | 1 | 117 | 1.57e-31 | 114 |
| Msa0843820 | AT3G27650.1 | 56.250 | 96 | 41 | 1 | 7 | 102 | 38 | 132 | 1.73e-31 | 113 |
| Msa0843820 | AT5G63090.4 | 56.250 | 96 | 41 | 1 | 7 | 102 | 10 | 104 | 5.44e-31 | 112 |
| Msa0843820 | AT5G63090.3 | 56.250 | 96 | 41 | 1 | 7 | 102 | 10 | 104 | 5.44e-31 | 112 |
| Msa0843820 | AT5G63090.2 | 56.250 | 96 | 41 | 1 | 7 | 102 | 10 | 104 | 5.44e-31 | 112 |
| Msa0843820 | AT5G63090.1 | 56.250 | 96 | 41 | 1 | 7 | 102 | 10 | 104 | 5.44e-31 | 112 |
| Msa0843820 | AT3G11090.1 | 45.312 | 128 | 65 | 3 | 5 | 128 | 8 | 134 | 3.00e-30 | 110 |
| Msa0843820 | AT1G31320.1 | 53.261 | 92 | 42 | 1 | 4 | 95 | 9 | 99 | 8.46e-30 | 109 |
| Msa0843820 | AT1G07900.1 | 52.577 | 97 | 45 | 1 | 7 | 103 | 32 | 127 | 1.12e-29 | 109 |
| Msa0843820 | AT1G16530.1 | 55.556 | 99 | 42 | 2 | 7 | 104 | 13 | 110 | 1.15e-29 | 108 |
| Msa0843820 | AT2G28500.1 | 52.577 | 97 | 45 | 1 | 7 | 103 | 54 | 149 | 7.14e-29 | 108 |
| Msa0843820 | AT5G66870.1 | 50.459 | 109 | 53 | 1 | 2 | 110 | 1 | 108 | 8.12e-28 | 107 |
| Msa0843820 | AT2G30340.2 | 49.515 | 103 | 49 | 2 | 7 | 108 | 52 | 152 | 2.09e-27 | 105 |
| Msa0843820 | AT2G30340.1 | 49.515 | 103 | 49 | 2 | 7 | 108 | 51 | 151 | 2.37e-27 | 105 |
| Msa0843820 | AT2G23660.2 | 48.039 | 102 | 52 | 1 | 7 | 108 | 4 | 104 | 1.04e-25 | 102 |
| Msa0843820 | AT2G23660.3 | 48.039 | 102 | 52 | 1 | 7 | 108 | 4 | 104 | 1.04e-25 | 102 |
| Msa0843820 | AT2G23660.1 | 48.039 | 102 | 52 | 1 | 7 | 108 | 4 | 104 | 1.04e-25 | 102 |
| Msa0843820 | AT3G26660.1 | 46.316 | 95 | 50 | 1 | 9 | 103 | 6 | 99 | 1.87e-25 | 96.7 |
| Msa0843820 | AT3G26620.1 | 46.316 | 95 | 50 | 1 | 9 | 103 | 6 | 99 | 3.55e-25 | 95.9 |
| Msa0843820 | AT1G65620.1 | 58.537 | 82 | 33 | 1 | 7 | 88 | 8 | 88 | 1.22e-24 | 96.7 |
| Msa0843820 | AT1G65620.4 | 58.537 | 82 | 33 | 1 | 7 | 88 | 8 | 88 | 1.22e-24 | 96.7 |
| Msa0843820 | AT1G65620.3 | 58.537 | 82 | 33 | 1 | 7 | 88 | 8 | 88 | 1.22e-24 | 96.7 |
| Msa0843820 | AT1G65620.5 | 58.537 | 82 | 33 | 1 | 7 | 88 | 8 | 88 | 1.22e-24 | 96.7 |
| Msa0843820 | AT1G65620.2 | 58.537 | 82 | 33 | 1 | 7 | 88 | 8 | 88 | 1.22e-24 | 96.7 |
| Msa0843820 | AT2G40470.2 | 52.427 | 103 | 46 | 2 | 7 | 108 | 19 | 119 | 2.25e-24 | 96.3 |
| Msa0843820 | AT3G50510.1 | 41.593 | 113 | 65 | 1 | 2 | 114 | 6 | 117 | 2.53e-24 | 95.9 |
| Msa0843820 | AT3G50510.2 | 41.593 | 113 | 65 | 1 | 2 | 114 | 6 | 117 | 2.53e-24 | 95.9 |
| Msa0843820 | AT2G40470.1 | 52.427 | 103 | 46 | 2 | 7 | 108 | 44 | 144 | 3.20e-24 | 96.3 |
| Msa0843820 | AT3G13850.1 | 38.739 | 111 | 58 | 3 | 9 | 111 | 37 | 145 | 2.51e-17 | 79.0 |
| Msa0843820 | AT1G72980.1 | 36.190 | 105 | 66 | 1 | 4 | 108 | 9 | 112 | 5.82e-16 | 73.9 |
| Msa0843820 | AT5G35900.1 | 38.739 | 111 | 66 | 2 | 9 | 118 | 6 | 115 | 6.97e-16 | 73.9 |
| Msa0843820 | AT1G06280.1 | 39.474 | 76 | 45 | 1 | 9 | 84 | 25 | 99 | 9.67e-14 | 67.8 |
| Msa0843820 | AT3G47870.1 | 34.831 | 89 | 57 | 1 | 4 | 92 | 32 | 119 | 3.21e-13 | 68.2 |
Find 45 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACTTCAAGATCCAATTTA+TGG | 0.150762 | 5_4:+21721326 | Msa0843820:CDS |
| CCTTATGAATAGCTGCAAAA+TGG | 0.260543 | 5_4:-21721208 | None:intergenic |
| ATTAGTGGAAGAAGAGAAAT+CGG | 0.262535 | 5_4:-21722045 | None:intergenic |
| TTGAGGAGGAAATGTGTTAA+AGG | 0.286061 | 5_4:+21721143 | Msa0843820:CDS |
| GCAGCTATTCATAAGGTCTT+TGG | 0.287235 | 5_4:+21721215 | Msa0843820:CDS |
| TTTCAAAATTCTTCTCATTA+GGG | 0.291892 | 5_4:-21721944 | None:intergenic |
| TGGGCAACAGAACCATAAAT+TGG | 0.301569 | 5_4:-21721338 | None:intergenic |
| CTGTCTTTGCATGTTGTCAT+AGG | 0.336728 | 5_4:-21722216 | None:intergenic |
| CTCATGGATCTAAACCCTAT+TGG | 0.344271 | 5_4:+21722110 | Msa0843820:CDS |
| ATTGGAAACTATGAAAATTC+AGG | 0.345302 | 5_4:+21722128 | Msa0843820:CDS |
| TTTCCTCCTCAAGAATTTGC+AGG | 0.357584 | 5_4:-21721132 | None:intergenic |
| ATGAGATGCTTTCTTCCAAT+AGG | 0.363922 | 5_4:-21722154 | None:intergenic |
| TGAAAATTCAGGAACCCTAT+TGG | 0.376897 | 5_4:+21722139 | Msa0843820:CDS |
| AATGGGTAGCACTTTGTTCA+TGG | 0.389795 | 5_4:-21721190 | None:intergenic |
| ACGGCCATGATGACTGGTTC+TGG | 0.395558 | 5_4:+21721095 | None:intergenic |
| TGAGATGCTTTCTTCCAATA+GGG | 0.428947 | 5_4:-21722153 | None:intergenic |
| TCTTGAGGGAGAATATTAGT+AGG | 0.429657 | 5_4:-21721969 | None:intergenic |
| CTTATGAATAGCTGCAAAAT+GGG | 0.434815 | 5_4:-21721207 | None:intergenic |
| ATTCTTACGGCCATGATGAC+TGG | 0.446907 | 5_4:+21721089 | None:intergenic |
| TGTTGTTGATGAGAGATTAG+TGG | 0.463491 | 5_4:-21722060 | None:intergenic |
| TCCCTCAAGATCTTCAAAGT+TGG | 0.463884 | 5_4:+21721982 | Msa0843820:CDS |
| CTTTGTTCATGGCAAAAGTA+AGG | 0.479437 | 5_4:-21721179 | None:intergenic |
| CAACAACACAATATTACAAT+GGG | 0.480559 | 5_4:+21722075 | Msa0843820:CDS |
| CAAATTAGCCACTTACTGAT+AGG | 0.482945 | 5_4:-21722243 | None:intergenic |
| CAGATGAACAAACCTGTTGT+TGG | 0.487101 | 5_4:-21721373 | None:intergenic |
| ACTGGTTCTGGTTCTCCTTG+TGG | 0.494488 | 5_4:+21721107 | Msa0843820:CDS |
| TCTTCAAAGTTGGTTCCAGA+TGG | 0.523638 | 5_4:+21721992 | Msa0843820:CDS |
| AACCAACTTTGAAGATCTTG+AGG | 0.528680 | 5_4:-21721984 | None:intergenic |
| GCTTCACAACGATCAGTCAC+AGG | 0.531664 | 5_4:-21721272 | None:intergenic |
| TGGGACTACAAACACTCTCA+TGG | 0.531675 | 5_4:+21722094 | Msa0843820:CDS |
| TTAGTGGAAGAAGAGAAATC+GGG | 0.531706 | 5_4:-21722044 | None:intergenic |
| ACCAACTTTGAAGATCTTGA+GGG | 0.534056 | 5_4:-21721983 | None:intergenic |
| GTGGAGCCTGCAAATTCTTG+AGG | 0.534107 | 5_4:+21721126 | Msa0843820:CDS |
| AAGAAATTGAGAACACATGC+TGG | 0.541655 | 5_4:-21722021 | None:intergenic |
| ATGAACAAACCTGTTGTTGG+AGG | 0.559046 | 5_4:-21721370 | None:intergenic |
| AGAACCAGAACCAGTCATCA+TGG | 0.567393 | 5_4:-21721099 | None:intergenic |
| TCAACAACACAATATTACAA+TGG | 0.569747 | 5_4:+21722074 | Msa0843820:CDS |
| TGAGAGAACAAGCAGCTCAA+AGG | 0.584503 | 5_4:+21721892 | Msa0843820:CDS |
| AAGAATTTGCAGGCTCCACA+AGG | 0.586151 | 5_4:-21721122 | None:intergenic |
| CAGTCACAGGGAGGTGTGCG+AGG | 0.596818 | 5_4:-21721259 | None:intergenic |
| TGAACAAACCTGTTGTTGGA+GGG | 0.608742 | 5_4:-21721369 | None:intergenic |
| GAGCCTGCAAATTCTTGAGG+AGG | 0.637179 | 5_4:+21721129 | Msa0843820:CDS |
| CTTCACAACGATCAGTCACA+GGG | 0.652040 | 5_4:-21721271 | None:intergenic |
| ATGACAACATGCAAAGACAG+TGG | 0.691269 | 5_4:+21722219 | Msa0843820:CDS |
| CACAACGATCAGTCACAGGG+AGG | 0.754403 | 5_4:-21721268 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTCTTTTTTATATATAAAC+TGG | - | chr5_4:21721535-21721554 | None:intergenic | 15.0% |
| !!! | TTGAGTTTGTAATAAAATTT+TGG | + | chr5_4:21721747-21721766 | Msa0843820:intron | 15.0% |
| !!! | ACTCTTTTTTATATATAAAC+TGG | - | chr5_4:21721535-21721554 | None:intergenic | 15.0% |
| !!! | TTGAGTTTGTAATAAAATTT+TGG | + | chr5_4:21721747-21721766 | Msa0843820:intron | 15.0% |
| !!! | ATTAATTAACAAGAGTATCA+AGG | + | chr5_4:21721484-21721503 | Msa0843820:intron | 20.0% |
| !!! | TTAATTAACAAGAGTATCAA+GGG | + | chr5_4:21721485-21721504 | Msa0843820:intron | 20.0% |
| !! | TTTCAAAATTCTTCTCATTA+GGG | - | chr5_4:21721947-21721966 | None:intergenic | 20.0% |
| !!! | TTTTCAAAATTCTTCTCATT+AGG | - | chr5_4:21721948-21721967 | None:intergenic | 20.0% |
| !!! | AATTTTCATAGTTTCCAATA+GGG | - | chr5_4:21722127-21722146 | None:intergenic | 20.0% |
| !!! | ATTAATTAACAAGAGTATCA+AGG | + | chr5_4:21721484-21721503 | Msa0843820:intron | 20.0% |
| !!! | TTAATTAACAAGAGTATCAA+GGG | + | chr5_4:21721485-21721504 | Msa0843820:intron | 20.0% |
| !! | TTTCAAAATTCTTCTCATTA+GGG | - | chr5_4:21721947-21721966 | None:intergenic | 20.0% |
| !!! | TTTTCAAAATTCTTCTCATT+AGG | - | chr5_4:21721948-21721967 | None:intergenic | 20.0% |
| !!! | AATTTTCATAGTTTCCAATA+GGG | - | chr5_4:21722127-21722146 | None:intergenic | 20.0% |
| !!! | AGGTCTTACTATTGATTTTT+TGG | - | chr5_4:21721567-21721586 | None:intergenic | 25.0% |
| ! | ATAGTAAGACCTAATAAACA+CGG | + | chr5_4:21721575-21721594 | Msa0843820:intron | 25.0% |
| ! | TCAACAACACAATATTACAA+TGG | + | chr5_4:21722074-21722093 | Msa0843820:CDS | 25.0% |
| ! | CAACAACACAATATTACAAT+GGG | + | chr5_4:21722075-21722094 | Msa0843820:CDS | 25.0% |
| !! | GAATTTTCATAGTTTCCAAT+AGG | - | chr5_4:21722128-21722147 | None:intergenic | 25.0% |
| ! | ATTGGAAACTATGAAAATTC+AGG | + | chr5_4:21722128-21722147 | Msa0843820:CDS | 25.0% |
| !!! | AGGTCTTACTATTGATTTTT+TGG | - | chr5_4:21721567-21721586 | None:intergenic | 25.0% |
| ! | ATAGTAAGACCTAATAAACA+CGG | + | chr5_4:21721575-21721594 | Msa0843820:intron | 25.0% |
| ! | TCAACAACACAATATTACAA+TGG | + | chr5_4:21722074-21722093 | Msa0843820:CDS | 25.0% |
| ! | CAACAACACAATATTACAAT+GGG | + | chr5_4:21722075-21722094 | Msa0843820:CDS | 25.0% |
| !! | GAATTTTCATAGTTTCCAAT+AGG | - | chr5_4:21722128-21722147 | None:intergenic | 25.0% |
| ! | ATTGGAAACTATGAAAATTC+AGG | + | chr5_4:21722128-21722147 | Msa0843820:CDS | 25.0% |
| CTTATGAATAGCTGCAAAAT+GGG | - | chr5_4:21721210-21721229 | None:intergenic | 30.0% | |
| AGACTTCAAGATCCAATTTA+TGG | + | chr5_4:21721326-21721345 | Msa0843820:CDS | 30.0% | |
| TTGTTGGAGGGAAAAAATAT+GGG | - | chr5_4:21721360-21721379 | None:intergenic | 30.0% | |
| ! | TATATTTGACAAAAGCACGA+TGG | + | chr5_4:21721639-21721658 | Msa0843820:intron | 30.0% |
| ! | ATTAGGGTTTTCAGAATTTG+GGG | - | chr5_4:21721931-21721950 | None:intergenic | 30.0% |
| ! | CATTAGGGTTTTCAGAATTT+GGG | - | chr5_4:21721932-21721951 | None:intergenic | 30.0% |
| ! | TCATTAGGGTTTTCAGAATT+TGG | - | chr5_4:21721933-21721952 | None:intergenic | 30.0% |
| ATTAGTGGAAGAAGAGAAAT+CGG | - | chr5_4:21722048-21722067 | None:intergenic | 30.0% | |
| CTTATGAATAGCTGCAAAAT+GGG | - | chr5_4:21721210-21721229 | None:intergenic | 30.0% | |
| AGACTTCAAGATCCAATTTA+TGG | + | chr5_4:21721326-21721345 | Msa0843820:CDS | 30.0% | |
| TTGTTGGAGGGAAAAAATAT+GGG | - | chr5_4:21721360-21721379 | None:intergenic | 30.0% | |
| ! | TATATTTGACAAAAGCACGA+TGG | + | chr5_4:21721639-21721658 | Msa0843820:intron | 30.0% |
| ! | ATTAGGGTTTTCAGAATTTG+GGG | - | chr5_4:21721931-21721950 | None:intergenic | 30.0% |
| ! | CATTAGGGTTTTCAGAATTT+GGG | - | chr5_4:21721932-21721951 | None:intergenic | 30.0% |
| ! | TCATTAGGGTTTTCAGAATT+TGG | - | chr5_4:21721933-21721952 | None:intergenic | 30.0% |
| ATTAGTGGAAGAAGAGAAAT+CGG | - | chr5_4:21722048-21722067 | None:intergenic | 30.0% | |
| TTGAGGAGGAAATGTGTTAA+AGG | + | chr5_4:21721143-21721162 | Msa0843820:CDS | 35.0% | |
| CTTTGTTCATGGCAAAAGTA+AGG | - | chr5_4:21721182-21721201 | None:intergenic | 35.0% | |
| CCTTATGAATAGCTGCAAAA+TGG | - | chr5_4:21721211-21721230 | None:intergenic | 35.0% | |
| ! | CCATTTTGCAGCTATTCATA+AGG | + | chr5_4:21721208-21721227 | Msa0843820:CDS | 35.0% |
| GTTGTTGGAGGGAAAAAATA+TGG | - | chr5_4:21721361-21721380 | None:intergenic | 35.0% | |
| !!! | TATTTTTTCCCTCCAACAAC+AGG | + | chr5_4:21721361-21721380 | Msa0843820:CDS | 35.0% |
| CTTAAACTGAAAACCCTAGA+TGG | + | chr5_4:21721403-21721422 | Msa0843820:intron | 35.0% | |
| ATGTAAGCGTATACCATCTA+GGG | - | chr5_4:21721419-21721438 | None:intergenic | 35.0% | |
| AATGTAAGCGTATACCATCT+AGG | - | chr5_4:21721420-21721439 | None:intergenic | 35.0% | |
| ! | AGGGTACTCCAGTTTATATA+AGG | + | chr5_4:21721504-21721523 | Msa0843820:intron | 35.0% |
| GGGTACTCCAGTTTATATAA+GGG | + | chr5_4:21721505-21721524 | Msa0843820:intron | 35.0% | |
| ! | TGGAGTACCCTTATATAAAC+TGG | - | chr5_4:21721515-21721534 | None:intergenic | 35.0% |
| TGTAAGACTTGGCACATATT+TGG | + | chr5_4:21721606-21721625 | Msa0843820:intron | 35.0% | |
| TTGGTGTATTATTGATGCAC+TGG | + | chr5_4:21721723-21721742 | Msa0843820:intron | 35.0% | |
| TTCTTCTTCCTGATCTTTGT+AGG | + | chr5_4:21721839-21721858 | Msa0843820:intron | 35.0% | |
| TCTTGAGGGAGAATATTAGT+AGG | - | chr5_4:21721972-21721991 | None:intergenic | 35.0% | |
| ! | ACCAACTTTGAAGATCTTGA+GGG | - | chr5_4:21721986-21722005 | None:intergenic | 35.0% |
| ! | AACCAACTTTGAAGATCTTG+AGG | - | chr5_4:21721987-21722006 | None:intergenic | 35.0% |
| AAGAAATTGAGAACACATGC+TGG | - | chr5_4:21722024-21722043 | None:intergenic | 35.0% | |
| TTAGTGGAAGAAGAGAAATC+GGG | - | chr5_4:21722047-21722066 | None:intergenic | 35.0% | |
| ! | TGTTGTTGATGAGAGATTAG+TGG | - | chr5_4:21722063-21722082 | None:intergenic | 35.0% |
| TGAAAATTCAGGAACCCTAT+TGG | + | chr5_4:21722139-21722158 | Msa0843820:CDS | 35.0% | |
| TGAGATGCTTTCTTCCAATA+GGG | - | chr5_4:21722156-21722175 | None:intergenic | 35.0% | |
| ATGAGATGCTTTCTTCCAAT+AGG | - | chr5_4:21722157-21722176 | None:intergenic | 35.0% | |
| TTGAGGAGGAAATGTGTTAA+AGG | + | chr5_4:21721143-21721162 | Msa0843820:CDS | 35.0% | |
| CTTTGTTCATGGCAAAAGTA+AGG | - | chr5_4:21721182-21721201 | None:intergenic | 35.0% | |
| CCTTATGAATAGCTGCAAAA+TGG | - | chr5_4:21721211-21721230 | None:intergenic | 35.0% | |
| ! | CCATTTTGCAGCTATTCATA+AGG | + | chr5_4:21721208-21721227 | Msa0843820:CDS | 35.0% |
| GTTGTTGGAGGGAAAAAATA+TGG | - | chr5_4:21721361-21721380 | None:intergenic | 35.0% | |
| !!! | TATTTTTTCCCTCCAACAAC+AGG | + | chr5_4:21721361-21721380 | Msa0843820:CDS | 35.0% |
| CTTAAACTGAAAACCCTAGA+TGG | + | chr5_4:21721403-21721422 | Msa0843820:intron | 35.0% | |
| ATGTAAGCGTATACCATCTA+GGG | - | chr5_4:21721419-21721438 | None:intergenic | 35.0% | |
| AATGTAAGCGTATACCATCT+AGG | - | chr5_4:21721420-21721439 | None:intergenic | 35.0% | |
| ! | AGGGTACTCCAGTTTATATA+AGG | + | chr5_4:21721504-21721523 | Msa0843820:intron | 35.0% |
| GGGTACTCCAGTTTATATAA+GGG | + | chr5_4:21721505-21721524 | Msa0843820:intron | 35.0% | |
| ! | TGGAGTACCCTTATATAAAC+TGG | - | chr5_4:21721515-21721534 | None:intergenic | 35.0% |
| TGTAAGACTTGGCACATATT+TGG | + | chr5_4:21721606-21721625 | Msa0843820:intron | 35.0% | |
| TTGGTGTATTATTGATGCAC+TGG | + | chr5_4:21721723-21721742 | Msa0843820:intron | 35.0% | |
| TTCTTCTTCCTGATCTTTGT+AGG | + | chr5_4:21721839-21721858 | Msa0843820:intron | 35.0% | |
| TCTTGAGGGAGAATATTAGT+AGG | - | chr5_4:21721972-21721991 | None:intergenic | 35.0% | |
| ! | ACCAACTTTGAAGATCTTGA+GGG | - | chr5_4:21721986-21722005 | None:intergenic | 35.0% |
| ! | AACCAACTTTGAAGATCTTG+AGG | - | chr5_4:21721987-21722006 | None:intergenic | 35.0% |
| AAGAAATTGAGAACACATGC+TGG | - | chr5_4:21722024-21722043 | None:intergenic | 35.0% | |
| TTAGTGGAAGAAGAGAAATC+GGG | - | chr5_4:21722047-21722066 | None:intergenic | 35.0% | |
| ! | TGTTGTTGATGAGAGATTAG+TGG | - | chr5_4:21722063-21722082 | None:intergenic | 35.0% |
| TGAAAATTCAGGAACCCTAT+TGG | + | chr5_4:21722139-21722158 | Msa0843820:CDS | 35.0% | |
| TGAGATGCTTTCTTCCAATA+GGG | - | chr5_4:21722156-21722175 | None:intergenic | 35.0% | |
| ATGAGATGCTTTCTTCCAAT+AGG | - | chr5_4:21722157-21722176 | None:intergenic | 35.0% | |
| TTTCCTCCTCAAGAATTTGC+AGG | - | chr5_4:21721135-21721154 | None:intergenic | 40.0% | |
| AATGGGTAGCACTTTGTTCA+TGG | - | chr5_4:21721193-21721212 | None:intergenic | 40.0% | |
| GCAGCTATTCATAAGGTCTT+TGG | + | chr5_4:21721215-21721234 | Msa0843820:CDS | 40.0% | |
| TGGGCAACAGAACCATAAAT+TGG | - | chr5_4:21721341-21721360 | None:intergenic | 40.0% | |
| TGAACAAACCTGTTGTTGGA+GGG | - | chr5_4:21721372-21721391 | None:intergenic | 40.0% | |
| ATGAACAAACCTGTTGTTGG+AGG | - | chr5_4:21721373-21721392 | None:intergenic | 40.0% | |
| CAGATGAACAAACCTGTTGT+TGG | - | chr5_4:21721376-21721395 | None:intergenic | 40.0% | |
| AGATCGACACCGTGTTTATT+AGG | - | chr5_4:21721587-21721606 | None:intergenic | 40.0% | |
| TTGTATTTACTGCGCGAGTT+TGG | - | chr5_4:21721703-21721722 | None:intergenic | 40.0% | |
| ACTCGCGCAGTAAATACAAT+TGG | + | chr5_4:21721704-21721723 | Msa0843820:intron | 40.0% | |
| TTCTTCCTGATCTTTGTAGG+TGG | + | chr5_4:21721842-21721861 | Msa0843820:intron | 40.0% | |
| ATTGACCACCTACAAAGATC+AGG | - | chr5_4:21721850-21721869 | None:intergenic | 40.0% | |
| TCCCTCAAGATCTTCAAAGT+TGG | + | chr5_4:21721982-21722001 | Msa0843820:CDS | 40.0% | |
| ! | TCTTCAAAGTTGGTTCCAGA+TGG | + | chr5_4:21721992-21722011 | Msa0843820:CDS | 40.0% |
| ! | ACATGCTGGAATTTTCCATC+TGG | - | chr5_4:21722010-21722029 | None:intergenic | 40.0% |
| CTCATGGATCTAAACCCTAT+TGG | + | chr5_4:21722110-21722129 | Msa0843820:CDS | 40.0% | |
| CTGTCTTTGCATGTTGTCAT+AGG | - | chr5_4:21722219-21722238 | None:intergenic | 40.0% | |
| ATGACAACATGCAAAGACAG+TGG | + | chr5_4:21722219-21722238 | Msa0843820:CDS | 40.0% | |
| TTTCCTCCTCAAGAATTTGC+AGG | - | chr5_4:21721135-21721154 | None:intergenic | 40.0% | |
| AATGGGTAGCACTTTGTTCA+TGG | - | chr5_4:21721193-21721212 | None:intergenic | 40.0% | |
| GCAGCTATTCATAAGGTCTT+TGG | + | chr5_4:21721215-21721234 | Msa0843820:CDS | 40.0% | |
| TGGGCAACAGAACCATAAAT+TGG | - | chr5_4:21721341-21721360 | None:intergenic | 40.0% | |
| TGAACAAACCTGTTGTTGGA+GGG | - | chr5_4:21721372-21721391 | None:intergenic | 40.0% | |
| ATGAACAAACCTGTTGTTGG+AGG | - | chr5_4:21721373-21721392 | None:intergenic | 40.0% | |
| CAGATGAACAAACCTGTTGT+TGG | - | chr5_4:21721376-21721395 | None:intergenic | 40.0% | |
| AGATCGACACCGTGTTTATT+AGG | - | chr5_4:21721587-21721606 | None:intergenic | 40.0% | |
| TTGTATTTACTGCGCGAGTT+TGG | - | chr5_4:21721703-21721722 | None:intergenic | 40.0% | |
| ACTCGCGCAGTAAATACAAT+TGG | + | chr5_4:21721704-21721723 | Msa0843820:intron | 40.0% | |
| TTCTTCCTGATCTTTGTAGG+TGG | + | chr5_4:21721842-21721861 | Msa0843820:intron | 40.0% | |
| ATTGACCACCTACAAAGATC+AGG | - | chr5_4:21721850-21721869 | None:intergenic | 40.0% | |
| TCCCTCAAGATCTTCAAAGT+TGG | + | chr5_4:21721982-21722001 | Msa0843820:CDS | 40.0% | |
| ! | TCTTCAAAGTTGGTTCCAGA+TGG | + | chr5_4:21721992-21722011 | Msa0843820:CDS | 40.0% |
| ! | ACATGCTGGAATTTTCCATC+TGG | - | chr5_4:21722010-21722029 | None:intergenic | 40.0% |
| CTCATGGATCTAAACCCTAT+TGG | + | chr5_4:21722110-21722129 | Msa0843820:CDS | 40.0% | |
| CTGTCTTTGCATGTTGTCAT+AGG | - | chr5_4:21722219-21722238 | None:intergenic | 40.0% | |
| ATGACAACATGCAAAGACAG+TGG | + | chr5_4:21722219-21722238 | Msa0843820:CDS | 40.0% | |
| AAGAATTTGCAGGCTCCACA+AGG | - | chr5_4:21721125-21721144 | None:intergenic | 45.0% | |
| CTTCACAACGATCAGTCACA+GGG | - | chr5_4:21721274-21721293 | None:intergenic | 45.0% | |
| ! | ACAAAAGCACGATGGCATCA+AGG | + | chr5_4:21721647-21721666 | Msa0843820:intron | 45.0% |
| ! | CACTGTGTTGATCTATGCAG+TGG | + | chr5_4:21721794-21721813 | Msa0843820:intron | 45.0% |
| TGAGAGAACAAGCAGCTCAA+AGG | + | chr5_4:21721892-21721911 | Msa0843820:CDS | 45.0% | |
| TGGGACTACAAACACTCTCA+TGG | + | chr5_4:21722094-21722113 | Msa0843820:CDS | 45.0% | |
| AAGAATTTGCAGGCTCCACA+AGG | - | chr5_4:21721125-21721144 | None:intergenic | 45.0% | |
| CTTCACAACGATCAGTCACA+GGG | - | chr5_4:21721274-21721293 | None:intergenic | 45.0% | |
| ! | ACAAAAGCACGATGGCATCA+AGG | + | chr5_4:21721647-21721666 | Msa0843820:intron | 45.0% |
| ! | CACTGTGTTGATCTATGCAG+TGG | + | chr5_4:21721794-21721813 | Msa0843820:intron | 45.0% |
| TGAGAGAACAAGCAGCTCAA+AGG | + | chr5_4:21721892-21721911 | Msa0843820:CDS | 45.0% | |
| TGGGACTACAAACACTCTCA+TGG | + | chr5_4:21722094-21722113 | Msa0843820:CDS | 45.0% | |
| !! | ACTGGTTCTGGTTCTCCTTG+TGG | + | chr5_4:21721107-21721126 | Msa0843820:CDS | 50.0% |
| GTGGAGCCTGCAAATTCTTG+AGG | + | chr5_4:21721126-21721145 | Msa0843820:CDS | 50.0% | |
| GAGCCTGCAAATTCTTGAGG+AGG | + | chr5_4:21721129-21721148 | Msa0843820:CDS | 50.0% | |
| GCTTCACAACGATCAGTCAC+AGG | - | chr5_4:21721275-21721294 | None:intergenic | 50.0% | |
| !! | CGGTGTCGATCTGTAAGACT+TGG | + | chr5_4:21721595-21721614 | Msa0843820:intron | 50.0% |
| !! | ACTGGTTCTGGTTCTCCTTG+TGG | + | chr5_4:21721107-21721126 | Msa0843820:CDS | 50.0% |
| GTGGAGCCTGCAAATTCTTG+AGG | + | chr5_4:21721126-21721145 | Msa0843820:CDS | 50.0% | |
| GAGCCTGCAAATTCTTGAGG+AGG | + | chr5_4:21721129-21721148 | Msa0843820:CDS | 50.0% | |
| GCTTCACAACGATCAGTCAC+AGG | - | chr5_4:21721275-21721294 | None:intergenic | 50.0% | |
| !! | CGGTGTCGATCTGTAAGACT+TGG | + | chr5_4:21721595-21721614 | Msa0843820:intron | 50.0% |
| CACAACGATCAGTCACAGGG+AGG | - | chr5_4:21721271-21721290 | None:intergenic | 55.0% | |
| CACAACGATCAGTCACAGGG+AGG | - | chr5_4:21721271-21721290 | None:intergenic | 55.0% | |
| ! | CAGTCACAGGGAGGTGTGCG+AGG | - | chr5_4:21721262-21721281 | None:intergenic | 65.0% |
| ! | CAGTCACAGGGAGGTGTGCG+AGG | - | chr5_4:21721262-21721281 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 21721101 | 21722253 | 21721101 | ID=Msa0843820;Name=Msa0843820 |
| chr5_4 | mRNA | 21721101 | 21722253 | 21721101 | ID=Msa0843820-mRNA-1;Parent=Msa0843820;Name=Msa0843820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|224 |
| chr5_4 | exon | 21721101 | 21721382 | 21721101 | ID=Msa0843820-mRNA-1:exon:8938;Parent=Msa0843820-mRNA-1 |
| chr5_4 | exon | 21721861 | 21722253 | 21721861 | ID=Msa0843820-mRNA-1:exon:8939;Parent=Msa0843820-mRNA-1 |
| chr5_4 | CDS | 21721101 | 21721382 | 21721101 | ID=Msa0843820-mRNA-1:cds;Parent=Msa0843820-mRNA-1 |
| chr5_4 | CDS | 21721861 | 21722253 | 21721861 | ID=Msa0843820-mRNA-1:cds;Parent=Msa0843820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
