Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843850 | XP_003613423.1 | 93.671 | 237 | 10 | 1 | 1 | 232 | 1 | 237 | 4.78e-132 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843850 | sp|Q9ZWS9|ARR3_ARATH | 54.701 | 234 | 66 | 5 | 1 | 224 | 23 | 226 | 5.24e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843850 | G7K5L8 | 93.671 | 237 | 10 | 1 | 1 | 232 | 1 | 237 | 2.28e-132 | 382 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0843850 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843850 | MtrunA17_Chr5g0414931 | 93.671 | 237 | 10 | 1 | 1 | 232 | 1 | 237 | 4.39e-136 | 382 |
| Msa0843850 | MtrunA17_Chr1g0170741 | 68.966 | 232 | 38 | 4 | 1 | 232 | 1 | 198 | 4.21e-89 | 261 |
| Msa0843850 | MtrunA17_Chr4g0059571 | 69.481 | 154 | 43 | 1 | 1 | 154 | 16 | 165 | 2.42e-66 | 204 |
| Msa0843850 | MtrunA17_Chr3g0118211 | 68.613 | 137 | 39 | 1 | 10 | 146 | 22 | 154 | 9.36e-61 | 189 |
| Msa0843850 | MtrunA17_Chr7g0256551 | 60.927 | 151 | 54 | 2 | 10 | 155 | 8 | 158 | 2.00e-60 | 190 |
| Msa0843850 | MtrunA17_Chr8g0352871 | 58.784 | 148 | 55 | 2 | 10 | 152 | 8 | 154 | 4.15e-54 | 171 |
| Msa0843850 | MtrunA17_Chr3g0082861 | 57.639 | 144 | 56 | 1 | 10 | 148 | 3 | 146 | 7.90e-54 | 170 |
| Msa0843850 | MtrunA17_Chr3g0128691 | 59.701 | 134 | 46 | 3 | 12 | 142 | 19 | 147 | 1.99e-50 | 161 |
| Msa0843850 | MtrunA17_Chr3g0124861 | 48.718 | 156 | 65 | 3 | 1 | 142 | 12 | 166 | 2.75e-46 | 153 |
| Msa0843850 | MtrunA17_Chr4g0021731 | 61.905 | 84 | 26 | 3 | 10 | 92 | 10 | 88 | 6.63e-26 | 96.7 |
| Msa0843850 | MtrunA17_Chr4g0030271 | 29.661 | 236 | 135 | 5 | 11 | 232 | 89 | 307 | 3.28e-20 | 89.0 |
| Msa0843850 | MtrunA17_Chr3g0127941 | 29.016 | 193 | 111 | 4 | 11 | 190 | 56 | 235 | 3.51e-18 | 83.2 |
| Msa0843850 | MtrunA17_Chr1g0181811 | 31.579 | 133 | 78 | 2 | 13 | 145 | 87 | 206 | 4.71e-15 | 73.9 |
| Msa0843850 | MtrunA17_Chr8g0345901 | 30.216 | 139 | 84 | 1 | 9 | 147 | 34 | 159 | 7.94e-15 | 73.2 |
| Msa0843850 | MtrunA17_Chr7g0276361 | 29.630 | 135 | 82 | 2 | 13 | 147 | 16 | 137 | 3.56e-13 | 68.2 |
| Msa0843850 | MtrunA17_Chr4g0074411 | 26.087 | 161 | 103 | 3 | 11 | 171 | 22 | 166 | 6.06e-13 | 67.8 |
| Msa0843850 | MtrunA17_Chr8g0376881 | 26.190 | 168 | 104 | 4 | 11 | 174 | 29 | 180 | 6.25e-13 | 67.4 |
| Msa0843850 | MtrunA17_Chr1g0149841 | 27.586 | 174 | 109 | 4 | 13 | 186 | 11 | 167 | 1.74e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843850 | AT1G59940.1 | 54.701 | 234 | 66 | 5 | 1 | 224 | 23 | 226 | 5.32e-72 | 219 |
| Msa0843850 | AT1G59940.2 | 54.701 | 234 | 66 | 5 | 1 | 224 | 115 | 318 | 1.15e-70 | 219 |
| Msa0843850 | AT1G10470.3 | 55.200 | 250 | 52 | 7 | 10 | 228 | 19 | 239 | 1.81e-70 | 216 |
| Msa0843850 | AT1G10470.1 | 55.200 | 250 | 52 | 7 | 10 | 228 | 33 | 253 | 2.66e-70 | 216 |
| Msa0843850 | AT3G48100.1 | 69.128 | 149 | 42 | 3 | 2 | 149 | 15 | 160 | 4.33e-65 | 200 |
| Msa0843850 | AT5G62920.1 | 76.154 | 130 | 25 | 2 | 11 | 139 | 25 | 149 | 1.21e-63 | 196 |
| Msa0843850 | AT1G19050.1 | 55.866 | 179 | 55 | 3 | 5 | 183 | 18 | 172 | 2.21e-60 | 189 |
| Msa0843850 | AT1G74890.1 | 70.000 | 130 | 35 | 1 | 10 | 139 | 17 | 142 | 1.81e-58 | 184 |
| Msa0843850 | AT3G57040.2 | 57.317 | 164 | 57 | 3 | 10 | 162 | 8 | 169 | 6.81e-58 | 183 |
| Msa0843850 | AT3G57040.1 | 57.317 | 164 | 57 | 3 | 10 | 162 | 8 | 169 | 6.81e-58 | 183 |
| Msa0843850 | AT2G41310.1 | 59.615 | 156 | 55 | 3 | 1 | 152 | 3 | 154 | 2.45e-57 | 182 |
| Msa0843850 | AT3G56380.1 | 59.420 | 138 | 53 | 1 | 5 | 142 | 14 | 148 | 1.40e-56 | 177 |
| Msa0843850 | AT3G56380.2 | 58.993 | 139 | 53 | 2 | 5 | 142 | 14 | 149 | 8.21e-55 | 173 |
| Msa0843850 | AT2G40670.1 | 60.000 | 135 | 51 | 2 | 9 | 142 | 27 | 159 | 8.76e-55 | 173 |
| Msa0843850 | AT2G40670.2 | 59.559 | 136 | 51 | 3 | 9 | 142 | 27 | 160 | 5.41e-53 | 169 |
| Msa0843850 | AT1G10470.2 | 40.642 | 187 | 53 | 8 | 74 | 228 | 17 | 177 | 4.63e-22 | 89.7 |
| Msa0843850 | AT2G07440.1 | 55.000 | 60 | 27 | 0 | 93 | 152 | 9 | 68 | 3.78e-15 | 70.5 |
| Msa0843850 | AT5G60100.7 | 35.338 | 133 | 73 | 2 | 13 | 145 | 66 | 185 | 4.08e-15 | 73.9 |
| Msa0843850 | AT5G60100.6 | 35.338 | 133 | 73 | 2 | 13 | 145 | 66 | 185 | 4.08e-15 | 73.9 |
| Msa0843850 | AT5G60100.4 | 35.338 | 133 | 73 | 2 | 13 | 145 | 66 | 185 | 4.08e-15 | 73.9 |
| Msa0843850 | AT5G24470.1 | 30.496 | 141 | 83 | 3 | 7 | 147 | 48 | 173 | 5.00e-15 | 73.9 |
| Msa0843850 | AT5G60100.2 | 35.338 | 133 | 73 | 2 | 13 | 145 | 66 | 185 | 6.70e-15 | 73.6 |
| Msa0843850 | AT5G60100.5 | 35.338 | 133 | 73 | 2 | 13 | 145 | 66 | 185 | 7.52e-15 | 73.6 |
| Msa0843850 | AT5G60100.3 | 35.338 | 133 | 73 | 2 | 13 | 145 | 66 | 185 | 7.52e-15 | 73.6 |
| Msa0843850 | AT5G60100.1 | 35.338 | 133 | 73 | 2 | 13 | 145 | 66 | 185 | 7.52e-15 | 73.6 |
| Msa0843850 | AT2G46790.3 | 29.630 | 135 | 82 | 2 | 11 | 145 | 37 | 158 | 8.95e-15 | 73.2 |
| Msa0843850 | AT2G46790.1 | 29.630 | 135 | 82 | 2 | 11 | 145 | 37 | 158 | 1.07e-14 | 73.2 |
| Msa0843850 | AT5G02810.1 | 30.370 | 135 | 81 | 1 | 11 | 145 | 78 | 199 | 3.95e-14 | 71.6 |
| Msa0843850 | AT5G07210.2 | 32.576 | 132 | 72 | 3 | 10 | 141 | 15 | 129 | 8.85e-14 | 70.5 |
| Msa0843850 | AT5G07210.1 | 30.714 | 140 | 72 | 4 | 10 | 141 | 15 | 137 | 2.71e-11 | 63.2 |
Find 57 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAGAGCACTACAATTTC+TGG | 0.202396 | 5_4:-21750138 | Msa0843850:CDS |
| GTTTCCTTAGCCTGGTTTGA+AGG | 0.364670 | 5_4:-21749983 | Msa0843850:intron |
| CTCAAAATTTCATCTTGTAA+AGG | 0.415529 | 5_4:-21750335 | Msa0843850:intron |
| AACTCATAACCAGTCATTCC+TGG | 0.425647 | 5_4:+21749931 | None:intergenic |
| TAGCGATAACTTCACTGTCT+TGG | 0.452797 | 5_4:+21749284 | None:intergenic |
| AGCACTACAATTTCTGGGGT+TGG | 0.454081 | 5_4:-21750132 | Msa0843850:CDS |
| ATAAGAGCACTACAATTTCT+GGG | 0.455946 | 5_4:-21750137 | Msa0843850:CDS |
| TGAGTTGCTTAAGAAAATCA+AGG | 0.460054 | 5_4:-21749914 | Msa0843850:intron |
| TGAAAGTGTTGATGATGAAA+TGG | 0.468109 | 5_4:+21749159 | None:intergenic |
| ATTACAGATTATTGCATGCC+AGG | 0.468259 | 5_4:-21749949 | Msa0843850:CDS |
| TATTGCATGCCAGGAATGAC+TGG | 0.472610 | 5_4:-21749940 | Msa0843850:CDS |
| TCAGAAGACATGATCACTAC+TGG | 0.477520 | 5_4:+21749765 | None:intergenic |
| TTAGTTACTGCAGTGGATAG+TGG | 0.477996 | 5_4:-21750161 | Msa0843850:intron |
| CAGCCAACACATGAACCTCT+TGG | 0.478718 | 5_4:+21750399 | None:intergenic |
| GGATAGGGATCAACAACAAA+AGG | 0.483740 | 5_4:-21749222 | Msa0843850:CDS |
| ACATCTTGCCACGCATTGAC+AGG | 0.484895 | 5_4:-21749740 | Msa0843850:intron |
| GATGGTGATGGTGTAGGGAT+AGG | 0.492736 | 5_4:-21749238 | Msa0843850:CDS |
| AGCCAACACATGAACCTCTT+GGG | 0.497488 | 5_4:+21750400 | None:intergenic |
| TCCTTAGCCTGGTTTGAAGG+TGG | 0.500088 | 5_4:-21749980 | Msa0843850:intron |
| GCTTCCCGCTCTAACCTCCC+TGG | 0.501953 | 5_4:+21749306 | None:intergenic |
| ATCTGACGTGAAACGTTTGA+AGG | 0.502511 | 5_4:-21749341 | Msa0843850:CDS |
| TACTGGAATTGCTCTAAAAG+TGG | 0.506655 | 5_4:+21749782 | None:intergenic |
| GACAACCAGGGAGGTTAGAG+CGG | 0.506833 | 5_4:-21749311 | Msa0843850:CDS |
| ATGGTGATGGTGTAGGGATA+GGG | 0.509422 | 5_4:-21749237 | Msa0843850:CDS |
| TTCCCAAGAGGTTCATGTGT+TGG | 0.514393 | 5_4:-21750402 | Msa0843850:CDS |
| ATTGGAGAATCAAGAATGTC+GGG | 0.519018 | 5_4:+21749091 | None:intergenic |
| TTCACGTCAGATAATTTCAC+TGG | 0.529676 | 5_4:+21749352 | None:intergenic |
| TTCTTGATTCTCCAATCAGA+CGG | 0.540193 | 5_4:-21749084 | Msa0843850:CDS |
| TTGATCGTAAAGTTATTGAA+AGG | 0.541223 | 5_4:-21750361 | Msa0843850:CDS |
| ATAACGATGGTGATGGTGTA+GGG | 0.541250 | 5_4:-21749243 | Msa0843850:CDS |
| GATAACGATGGTGATGGTGT+AGG | 0.548802 | 5_4:-21749244 | Msa0843850:CDS |
| ATCAGACGGCTTAAAATGAC+CGG | 0.557664 | 5_4:-21749070 | Msa0843850:CDS |
| GATTGGAGAATCAAGAATGT+CGG | 0.564103 | 5_4:+21749090 | None:intergenic |
| TCGAAAGAGTCATTCGGTGC+CGG | 0.565124 | 5_4:+21749051 | None:intergenic |
| TGACAATCGAAAGAGTCATT+CGG | 0.569827 | 5_4:+21749045 | None:intergenic |
| GAAGGTGACGGTGATGATGA+TGG | 0.581069 | 5_4:+21749133 | None:intergenic |
| TCTGACGTGAAACGTTTGAA+GGG | 0.584866 | 5_4:-21749340 | Msa0843850:CDS |
| TGGACGGTGGTGATGATGAC+AGG | 0.585676 | 5_4:+21749179 | None:intergenic |
| ACTAGATCCACCTTCAAACC+AGG | 0.592739 | 5_4:+21749973 | None:intergenic |
| ACAACCAGGGAGGTTAGAGC+GGG | 0.595105 | 5_4:-21749310 | Msa0843850:CDS |
| TGAAGGGTTACATGACAACC+AGG | 0.599838 | 5_4:-21749324 | Msa0843850:CDS |
| GTTATCGCTACCAACGGTGT+TGG | 0.609134 | 5_4:-21749271 | Msa0843850:CDS |
| AAATGTAGATGCTTGGAGGA+AGG | 0.613553 | 5_4:-21749397 | Msa0843850:intron |
| AAACAGTGTTGTTTCCCAAG+AGG | 0.619934 | 5_4:-21750414 | Msa0843850:CDS |
| GAAGACAACGGTGATGATGA+AGG | 0.631209 | 5_4:+21749115 | None:intergenic |
| GTTATCGTTACCAACACCGT+TGG | 0.634811 | 5_4:+21749261 | None:intergenic |
| ATGCTTGGAGGAAGGTGCAG+AGG | 0.640084 | 5_4:-21749389 | Msa0843850:CDS |
| TAAGAGCACTACAATTTCTG+GGG | 0.651134 | 5_4:-21750136 | Msa0843850:CDS |
| AGTGAAGTTATCGCTACCAA+CGG | 0.690720 | 5_4:-21749277 | Msa0843850:CDS |
| GGTAACGATAACGATGGTGA+TGG | 0.701040 | 5_4:-21749250 | Msa0843850:CDS |
| AGTGTTGATGATGAAATGGA+CGG | 0.715438 | 5_4:+21749163 | None:intergenic |
| AACGGTGATGATGAAGGTGA+CGG | 0.733254 | 5_4:+21749121 | None:intergenic |
| GTTGATGATGAAATGGACGG+TGG | 0.734267 | 5_4:+21749166 | None:intergenic |
| GAAGGGTTACATGACAACCA+GGG | 0.738936 | 5_4:-21749323 | Msa0843850:CDS |
| AGAATGTCGGGTGAAGACAA+CGG | 0.739291 | 5_4:+21749103 | None:intergenic |
| GGTGTTGGTAACGATAACGA+TGG | 0.744946 | 5_4:-21749256 | Msa0843850:CDS |
| GGGTTACATGACAACCAGGG+AGG | 0.751767 | 5_4:-21749320 | Msa0843850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTTCTCATTTTTAA+AGG | - | chr5_4:21749217-21749236 | Msa0843850:CDS | 15.0% |
| !! | TCATATACTTTGTATTAAAT+TGG | + | chr5_4:21749952-21749971 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTCTCATTTTTAA+AGG | - | chr5_4:21749217-21749236 | Msa0843850:CDS | 15.0% |
| !! | TCATATACTTTGTATTAAAT+TGG | + | chr5_4:21749952-21749971 | None:intergenic | 15.0% |
| !! | ACAAAACAAAAAGAAGAAAA+TGG | - | chr5_4:21749192-21749211 | Msa0843850:CDS | 20.0% |
| !! | CAATAAAGTGTAAAAATGAA+GGG | + | chr5_4:21749618-21749637 | None:intergenic | 20.0% |
| !! | TCAATAAAGTGTAAAAATGA+AGG | + | chr5_4:21749619-21749638 | None:intergenic | 20.0% |
| !!! | TATGTTAAAATTGTTGTTAG+TGG | - | chr5_4:21749975-21749994 | Msa0843850:CDS | 20.0% |
| !! | GAAATTATGATGTAGAAAAA+AGG | - | chr5_4:21750041-21750060 | Msa0843850:intron | 20.0% |
| !! | ACAAAACAAAAAGAAGAAAA+TGG | - | chr5_4:21749192-21749211 | Msa0843850:CDS | 20.0% |
| !! | CAATAAAGTGTAAAAATGAA+GGG | + | chr5_4:21749618-21749637 | None:intergenic | 20.0% |
| !! | TCAATAAAGTGTAAAAATGA+AGG | + | chr5_4:21749619-21749638 | None:intergenic | 20.0% |
| !!! | TATGTTAAAATTGTTGTTAG+TGG | - | chr5_4:21749975-21749994 | Msa0843850:CDS | 20.0% |
| !! | GAAATTATGATGTAGAAAAA+AGG | - | chr5_4:21750041-21750060 | Msa0843850:intron | 20.0% |
| ! | TTGATCGTAAAGTTATTGAA+AGG | - | chr5_4:21749121-21749140 | Msa0843850:CDS | 25.0% |
| ! | CTCAAAATTTCATCTTGTAA+AGG | - | chr5_4:21749147-21749166 | Msa0843850:CDS | 25.0% |
| !!! | TTTATTTTTAGTTACTGCAG+TGG | - | chr5_4:21749314-21749333 | Msa0843850:CDS | 25.0% |
| !!! | GACAGGTATTTTTTCTTTTT+TGG | - | chr5_4:21749759-21749778 | Msa0843850:CDS | 25.0% |
| ! | ATTGAAAAAATGTAGATGCT+TGG | - | chr5_4:21750078-21750097 | Msa0843850:intron | 25.0% |
| ! | TTGATCGTAAAGTTATTGAA+AGG | - | chr5_4:21749121-21749140 | Msa0843850:CDS | 25.0% |
| ! | CTCAAAATTTCATCTTGTAA+AGG | - | chr5_4:21749147-21749166 | Msa0843850:CDS | 25.0% |
| !!! | TTTATTTTTAGTTACTGCAG+TGG | - | chr5_4:21749314-21749333 | Msa0843850:CDS | 25.0% |
| !!! | GACAGGTATTTTTTCTTTTT+TGG | - | chr5_4:21749759-21749778 | Msa0843850:CDS | 25.0% |
| ! | ATTGAAAAAATGTAGATGCT+TGG | - | chr5_4:21750078-21750097 | Msa0843850:intron | 25.0% |
| !! | AATAAGAGCACTACAATTTC+TGG | - | chr5_4:21749344-21749363 | Msa0843850:CDS | 30.0% |
| !! | ATAAGAGCACTACAATTTCT+GGG | - | chr5_4:21749345-21749364 | Msa0843850:CDS | 30.0% |
| !!! | TTTATTTTGTTTCCTTAGCC+TGG | - | chr5_4:21749491-21749510 | Msa0843850:intron | 30.0% |
| TGAGTTGCTTAAGAAAATCA+AGG | - | chr5_4:21749568-21749587 | Msa0843850:intron | 30.0% | |
| !! | TGAAAGTGTTGATGATGAAA+TGG | + | chr5_4:21750326-21750345 | None:intergenic | 30.0% |
| !! | AATAAGAGCACTACAATTTC+TGG | - | chr5_4:21749344-21749363 | Msa0843850:CDS | 30.0% |
| !! | ATAAGAGCACTACAATTTCT+GGG | - | chr5_4:21749345-21749364 | Msa0843850:CDS | 30.0% |
| !!! | TTTATTTTGTTTCCTTAGCC+TGG | - | chr5_4:21749491-21749510 | Msa0843850:intron | 30.0% |
| TGAGTTGCTTAAGAAAATCA+AGG | - | chr5_4:21749568-21749587 | Msa0843850:intron | 30.0% | |
| !! | TGAAAGTGTTGATGATGAAA+TGG | + | chr5_4:21750326-21750345 | None:intergenic | 30.0% |
| !! | TAAGAGCACTACAATTTCTG+GGG | - | chr5_4:21749346-21749365 | Msa0843850:CDS | 35.0% |
| ATTACAGATTATTGCATGCC+AGG | - | chr5_4:21749533-21749552 | Msa0843850:intron | 35.0% | |
| ! | TCCAAGTTTCAATTTGAAGC+AGG | - | chr5_4:21749671-21749690 | Msa0843850:intron | 35.0% |
| TCCTGCTTCAAATTGAAACT+TGG | + | chr5_4:21749675-21749694 | None:intergenic | 35.0% | |
| !! | TACTGGAATTGCTCTAAAAG+TGG | + | chr5_4:21749703-21749722 | None:intergenic | 35.0% |
| AAAAAATACCTGTCAATGCG+TGG | + | chr5_4:21749753-21749772 | None:intergenic | 35.0% | |
| GAAAAAATGTAGATGCTTGG+AGG | - | chr5_4:21750081-21750100 | Msa0843850:intron | 35.0% | |
| TTCACGTCAGATAATTTCAC+TGG | + | chr5_4:21750133-21750152 | None:intergenic | 35.0% | |
| !! | AGTGTTGATGATGAAATGGA+CGG | + | chr5_4:21750322-21750341 | None:intergenic | 35.0% |
| ATTGGAGAATCAAGAATGTC+GGG | + | chr5_4:21750394-21750413 | None:intergenic | 35.0% | |
| GATTGGAGAATCAAGAATGT+CGG | + | chr5_4:21750395-21750414 | None:intergenic | 35.0% | |
| TTCTTGATTCTCCAATCAGA+CGG | - | chr5_4:21750398-21750417 | Msa0843850:CDS | 35.0% | |
| !! | TAAGAGCACTACAATTTCTG+GGG | - | chr5_4:21749346-21749365 | Msa0843850:CDS | 35.0% |
| ATTACAGATTATTGCATGCC+AGG | - | chr5_4:21749533-21749552 | Msa0843850:intron | 35.0% | |
| ! | TCCAAGTTTCAATTTGAAGC+AGG | - | chr5_4:21749671-21749690 | Msa0843850:intron | 35.0% |
| TCCTGCTTCAAATTGAAACT+TGG | + | chr5_4:21749675-21749694 | None:intergenic | 35.0% | |
| !! | TACTGGAATTGCTCTAAAAG+TGG | + | chr5_4:21749703-21749722 | None:intergenic | 35.0% |
| AAAAAATACCTGTCAATGCG+TGG | + | chr5_4:21749753-21749772 | None:intergenic | 35.0% | |
| GAAAAAATGTAGATGCTTGG+AGG | - | chr5_4:21750081-21750100 | Msa0843850:intron | 35.0% | |
| TTCACGTCAGATAATTTCAC+TGG | + | chr5_4:21750133-21750152 | None:intergenic | 35.0% | |
| !! | AGTGTTGATGATGAAATGGA+CGG | + | chr5_4:21750322-21750341 | None:intergenic | 35.0% |
| ATTGGAGAATCAAGAATGTC+GGG | + | chr5_4:21750394-21750413 | None:intergenic | 35.0% | |
| GATTGGAGAATCAAGAATGT+CGG | + | chr5_4:21750395-21750414 | None:intergenic | 35.0% | |
| TTCTTGATTCTCCAATCAGA+CGG | - | chr5_4:21750398-21750417 | Msa0843850:CDS | 35.0% | |
| !! | AAACAGTGTTGTTTCCCAAG+AGG | - | chr5_4:21749068-21749087 | Msa0843850:CDS | 40.0% |
| TTAGTTACTGCAGTGGATAG+TGG | - | chr5_4:21749321-21749340 | Msa0843850:CDS | 40.0% | |
| AACTCATAACCAGTCATTCC+TGG | + | chr5_4:21749554-21749573 | None:intergenic | 40.0% | |
| TCAGAAGACATGATCACTAC+TGG | + | chr5_4:21749720-21749739 | None:intergenic | 40.0% | |
| AAATGTAGATGCTTGGAGGA+AGG | - | chr5_4:21750085-21750104 | Msa0843850:intron | 40.0% | |
| ATCTGACGTGAAACGTTTGA+AGG | - | chr5_4:21750141-21750160 | Msa0843850:CDS | 40.0% | |
| TCTGACGTGAAACGTTTGAA+GGG | - | chr5_4:21750142-21750161 | Msa0843850:CDS | 40.0% | |
| TAGCGATAACTTCACTGTCT+TGG | + | chr5_4:21750201-21750220 | None:intergenic | 40.0% | |
| AGTGAAGTTATCGCTACCAA+CGG | - | chr5_4:21750205-21750224 | Msa0843850:intron | 40.0% | |
| !! | ATAACGATGGTGATGGTGTA+GGG | - | chr5_4:21750239-21750258 | Msa0843850:intron | 40.0% |
| GGATAGGGATCAACAACAAA+AGG | - | chr5_4:21750260-21750279 | Msa0843850:intron | 40.0% | |
| !! | GTCATTTTAAGCCGTCTGAT+TGG | + | chr5_4:21750412-21750431 | None:intergenic | 40.0% |
| ATCAGACGGCTTAAAATGAC+CGG | - | chr5_4:21750412-21750431 | Msa0843850:CDS | 40.0% | |
| !! | AAACAGTGTTGTTTCCCAAG+AGG | - | chr5_4:21749068-21749087 | Msa0843850:CDS | 40.0% |
| TTAGTTACTGCAGTGGATAG+TGG | - | chr5_4:21749321-21749340 | Msa0843850:CDS | 40.0% | |
| AACTCATAACCAGTCATTCC+TGG | + | chr5_4:21749554-21749573 | None:intergenic | 40.0% | |
| TCAGAAGACATGATCACTAC+TGG | + | chr5_4:21749720-21749739 | None:intergenic | 40.0% | |
| AAATGTAGATGCTTGGAGGA+AGG | - | chr5_4:21750085-21750104 | Msa0843850:intron | 40.0% | |
| ATCTGACGTGAAACGTTTGA+AGG | - | chr5_4:21750141-21750160 | Msa0843850:CDS | 40.0% | |
| TCTGACGTGAAACGTTTGAA+GGG | - | chr5_4:21750142-21750161 | Msa0843850:CDS | 40.0% | |
| TAGCGATAACTTCACTGTCT+TGG | + | chr5_4:21750201-21750220 | None:intergenic | 40.0% | |
| AGTGAAGTTATCGCTACCAA+CGG | - | chr5_4:21750205-21750224 | Msa0843850:intron | 40.0% | |
| !! | ATAACGATGGTGATGGTGTA+GGG | - | chr5_4:21750239-21750258 | Msa0843850:intron | 40.0% |
| GGATAGGGATCAACAACAAA+AGG | - | chr5_4:21750260-21750279 | Msa0843850:intron | 40.0% | |
| !! | GTCATTTTAAGCCGTCTGAT+TGG | + | chr5_4:21750412-21750431 | None:intergenic | 40.0% |
| ATCAGACGGCTTAAAATGAC+CGG | - | chr5_4:21750412-21750431 | Msa0843850:CDS | 40.0% | |
| TTCCCAAGAGGTTCATGTGT+TGG | - | chr5_4:21749080-21749099 | Msa0843850:CDS | 45.0% | |
| AGCCAACACATGAACCTCTT+GGG | + | chr5_4:21749085-21749104 | None:intergenic | 45.0% | |
| !! | AGCACTACAATTTCTGGGGT+TGG | - | chr5_4:21749350-21749369 | Msa0843850:CDS | 45.0% |
| ! | GTTTCCTTAGCCTGGTTTGA+AGG | - | chr5_4:21749499-21749518 | Msa0843850:intron | 45.0% |
| ACTAGATCCACCTTCAAACC+AGG | + | chr5_4:21749512-21749531 | None:intergenic | 45.0% | |
| TATTGCATGCCAGGAATGAC+TGG | - | chr5_4:21749542-21749561 | Msa0843850:intron | 45.0% | |
| TGAAGGGTTACATGACAACC+AGG | - | chr5_4:21750158-21750177 | Msa0843850:CDS | 45.0% | |
| GAAGGGTTACATGACAACCA+GGG | - | chr5_4:21750159-21750178 | Msa0843850:CDS | 45.0% | |
| GTTATCGTTACCAACACCGT+TGG | + | chr5_4:21750224-21750243 | None:intergenic | 45.0% | |
| !! | GGTGTTGGTAACGATAACGA+TGG | - | chr5_4:21750226-21750245 | Msa0843850:intron | 45.0% |
| GGTAACGATAACGATGGTGA+TGG | - | chr5_4:21750232-21750251 | Msa0843850:intron | 45.0% | |
| !! | GATAACGATGGTGATGGTGT+AGG | - | chr5_4:21750238-21750257 | Msa0843850:intron | 45.0% |
| !! | ATGGTGATGGTGTAGGGATA+GGG | - | chr5_4:21750245-21750264 | Msa0843850:intron | 45.0% |
| !! | GTTGATGATGAAATGGACGG+TGG | + | chr5_4:21750319-21750338 | None:intergenic | 45.0% |
| ! | AACGGTGATGATGAAGGTGA+CGG | + | chr5_4:21750364-21750383 | None:intergenic | 45.0% |
| ! | GAAGACAACGGTGATGATGA+AGG | + | chr5_4:21750370-21750389 | None:intergenic | 45.0% |
| AGAATGTCGGGTGAAGACAA+CGG | + | chr5_4:21750382-21750401 | None:intergenic | 45.0% | |
| TTCCCAAGAGGTTCATGTGT+TGG | - | chr5_4:21749080-21749099 | Msa0843850:CDS | 45.0% | |
| AGCCAACACATGAACCTCTT+GGG | + | chr5_4:21749085-21749104 | None:intergenic | 45.0% | |
| !! | AGCACTACAATTTCTGGGGT+TGG | - | chr5_4:21749350-21749369 | Msa0843850:CDS | 45.0% |
| ! | GTTTCCTTAGCCTGGTTTGA+AGG | - | chr5_4:21749499-21749518 | Msa0843850:intron | 45.0% |
| ACTAGATCCACCTTCAAACC+AGG | + | chr5_4:21749512-21749531 | None:intergenic | 45.0% | |
| TATTGCATGCCAGGAATGAC+TGG | - | chr5_4:21749542-21749561 | Msa0843850:intron | 45.0% | |
| TGAAGGGTTACATGACAACC+AGG | - | chr5_4:21750158-21750177 | Msa0843850:CDS | 45.0% | |
| GAAGGGTTACATGACAACCA+GGG | - | chr5_4:21750159-21750178 | Msa0843850:CDS | 45.0% | |
| GTTATCGTTACCAACACCGT+TGG | + | chr5_4:21750224-21750243 | None:intergenic | 45.0% | |
| !! | GGTGTTGGTAACGATAACGA+TGG | - | chr5_4:21750226-21750245 | Msa0843850:intron | 45.0% |
| GGTAACGATAACGATGGTGA+TGG | - | chr5_4:21750232-21750251 | Msa0843850:intron | 45.0% | |
| !! | GATAACGATGGTGATGGTGT+AGG | - | chr5_4:21750238-21750257 | Msa0843850:intron | 45.0% |
| !! | ATGGTGATGGTGTAGGGATA+GGG | - | chr5_4:21750245-21750264 | Msa0843850:intron | 45.0% |
| !! | GTTGATGATGAAATGGACGG+TGG | + | chr5_4:21750319-21750338 | None:intergenic | 45.0% |
| ! | AACGGTGATGATGAAGGTGA+CGG | + | chr5_4:21750364-21750383 | None:intergenic | 45.0% |
| ! | GAAGACAACGGTGATGATGA+AGG | + | chr5_4:21750370-21750389 | None:intergenic | 45.0% |
| AGAATGTCGGGTGAAGACAA+CGG | + | chr5_4:21750382-21750401 | None:intergenic | 45.0% | |
| !! | CTAAAATAAAAAATTTAAAT+TGG | + | chr5_4:21749421-21749440 | None:intergenic | 5.0% |
| !!! | ATTTAAATTTTTTATTTTAG+CGG | - | chr5_4:21749421-21749440 | Msa0843850:intron | 5.0% |
| !! | CTAAAATAAAAAATTTAAAT+TGG | + | chr5_4:21749421-21749440 | None:intergenic | 5.0% |
| !!! | ATTTAAATTTTTTATTTTAG+CGG | - | chr5_4:21749421-21749440 | Msa0843850:intron | 5.0% |
| CAGCCAACACATGAACCTCT+TGG | + | chr5_4:21749086-21749105 | None:intergenic | 50.0% | |
| ! | TCCTTAGCCTGGTTTGAAGG+TGG | - | chr5_4:21749502-21749521 | Msa0843850:intron | 50.0% |
| TCCACCTTCAAACCAGGCTA+AGG | + | chr5_4:21749506-21749525 | None:intergenic | 50.0% | |
| ! | ACATCTTGCCACGCATTGAC+AGG | - | chr5_4:21749742-21749761 | Msa0843850:CDS | 50.0% |
| GTTATCGCTACCAACGGTGT+TGG | - | chr5_4:21750211-21750230 | Msa0843850:intron | 50.0% | |
| !! | GATGGTGATGGTGTAGGGAT+AGG | - | chr5_4:21750244-21750263 | Msa0843850:intron | 50.0% |
| ! | GAAGGTGACGGTGATGATGA+TGG | + | chr5_4:21750352-21750371 | None:intergenic | 50.0% |
| CAGCCAACACATGAACCTCT+TGG | + | chr5_4:21749086-21749105 | None:intergenic | 50.0% | |
| ! | TCCTTAGCCTGGTTTGAAGG+TGG | - | chr5_4:21749502-21749521 | Msa0843850:intron | 50.0% |
| TCCACCTTCAAACCAGGCTA+AGG | + | chr5_4:21749506-21749525 | None:intergenic | 50.0% | |
| ! | ACATCTTGCCACGCATTGAC+AGG | - | chr5_4:21749742-21749761 | Msa0843850:CDS | 50.0% |
| GTTATCGCTACCAACGGTGT+TGG | - | chr5_4:21750211-21750230 | Msa0843850:intron | 50.0% | |
| !! | GATGGTGATGGTGTAGGGAT+AGG | - | chr5_4:21750244-21750263 | Msa0843850:intron | 50.0% |
| ! | GAAGGTGACGGTGATGATGA+TGG | + | chr5_4:21750352-21750371 | None:intergenic | 50.0% |
| ! | ATGCTTGGAGGAAGGTGCAG+AGG | - | chr5_4:21750093-21750112 | Msa0843850:intron | 55.0% |
| GGGTTACATGACAACCAGGG+AGG | - | chr5_4:21750162-21750181 | Msa0843850:intron | 55.0% | |
| GACAACCAGGGAGGTTAGAG+CGG | - | chr5_4:21750171-21750190 | Msa0843850:intron | 55.0% | |
| ACAACCAGGGAGGTTAGAGC+GGG | - | chr5_4:21750172-21750191 | Msa0843850:intron | 55.0% | |
| ! | TGGACGGTGGTGATGATGAC+AGG | + | chr5_4:21750306-21750325 | None:intergenic | 55.0% |
| ! | ATGCTTGGAGGAAGGTGCAG+AGG | - | chr5_4:21750093-21750112 | Msa0843850:intron | 55.0% |
| GGGTTACATGACAACCAGGG+AGG | - | chr5_4:21750162-21750181 | Msa0843850:intron | 55.0% | |
| GACAACCAGGGAGGTTAGAG+CGG | - | chr5_4:21750171-21750190 | Msa0843850:intron | 55.0% | |
| ACAACCAGGGAGGTTAGAGC+GGG | - | chr5_4:21750172-21750191 | Msa0843850:intron | 55.0% | |
| ! | TGGACGGTGGTGATGATGAC+AGG | + | chr5_4:21750306-21750325 | None:intergenic | 55.0% |
| GCTTCCCGCTCTAACCTCCC+TGG | + | chr5_4:21750179-21750198 | None:intergenic | 65.0% | |
| GCTTCCCGCTCTAACCTCCC+TGG | + | chr5_4:21750179-21750198 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 21749060 | 21750444 | 21749060 | ID=Msa0843850;Name=Msa0843850 |
| chr5_4 | mRNA | 21749060 | 21750444 | 21749060 | ID=Msa0843850-mRNA-1;Parent=Msa0843850;Name=Msa0843850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|232 |
| chr5_4 | exon | 21750336 | 21750444 | 21750336 | ID=Msa0843850-mRNA-1:exon:8963;Parent=Msa0843850-mRNA-1 |
| chr5_4 | exon | 21750094 | 21750179 | 21750094 | ID=Msa0843850-mRNA-1:exon:8962;Parent=Msa0843850-mRNA-1 |
| chr5_4 | exon | 21749915 | 21749995 | 21749915 | ID=Msa0843850-mRNA-1:exon:8961;Parent=Msa0843850-mRNA-1 |
| chr5_4 | exon | 21749741 | 21749811 | 21749741 | ID=Msa0843850-mRNA-1:exon:8960;Parent=Msa0843850-mRNA-1 |
| chr5_4 | exon | 21749060 | 21749411 | 21749060 | ID=Msa0843850-mRNA-1:exon:8959;Parent=Msa0843850-mRNA-1 |
| chr5_4 | CDS | 21750336 | 21750444 | 21750336 | ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1 |
| chr5_4 | CDS | 21750094 | 21750179 | 21750094 | ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1 |
| chr5_4 | CDS | 21749915 | 21749995 | 21749915 | ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1 |
| chr5_4 | CDS | 21749741 | 21749811 | 21749741 | ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1 |
| chr5_4 | CDS | 21749060 | 21749411 | 21749060 | ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
