AlfalfaGEDB | Msa0843850

M. sativa cultivar zhongmu-4 / Msa0843850

KEGG: K14492
GO: GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843850	XP_003613423.1	93.671	237	10	1	1	232	1	237	4.78e-132	382

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843850	sp\|Q9ZWS9\|ARR3_ARATH	54.701	234	66	5	1	224	23	226	5.24e-71	219

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843850	G7K5L8	93.671	237	10	1	1	232	1	237	2.28e-132	382

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TFs/TRs:

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Gene ID	Type	Classification
Msa0843850	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843850	MtrunA17_Chr5g0414931	93.671	237	10	1	1	232	1	237	4.39e-136	382
Msa0843850	MtrunA17_Chr1g0170741	68.966	232	38	4	1	232	1	198	4.21e-89	261
Msa0843850	MtrunA17_Chr4g0059571	69.481	154	43	1	1	154	16	165	2.42e-66	204
Msa0843850	MtrunA17_Chr3g0118211	68.613	137	39	1	10	146	22	154	9.36e-61	189
Msa0843850	MtrunA17_Chr7g0256551	60.927	151	54	2	10	155	8	158	2.00e-60	190
Msa0843850	MtrunA17_Chr8g0352871	58.784	148	55	2	10	152	8	154	4.15e-54	171
Msa0843850	MtrunA17_Chr3g0082861	57.639	144	56	1	10	148	3	146	7.90e-54	170
Msa0843850	MtrunA17_Chr3g0128691	59.701	134	46	3	12	142	19	147	1.99e-50	161
Msa0843850	MtrunA17_Chr3g0124861	48.718	156	65	3	1	142	12	166	2.75e-46	153
Msa0843850	MtrunA17_Chr4g0021731	61.905	84	26	3	10	92	10	88	6.63e-26	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0843850	AT1G59940.1	54.701	234	66	5	1	224	23	226	5.32e-72	219
Msa0843850	AT1G59940.2	54.701	234	66	5	1	224	115	318	1.15e-70	219
Msa0843850	AT1G10470.3	55.200	250	52	7	10	228	19	239	1.81e-70	216
Msa0843850	AT1G10470.1	55.200	250	52	7	10	228	33	253	2.66e-70	216
Msa0843850	AT3G48100.1	69.128	149	42	3	2	149	15	160	4.33e-65	200
Msa0843850	AT5G62920.1	76.154	130	25	2	11	139	25	149	1.21e-63	196
Msa0843850	AT1G19050.1	55.866	179	55	3	5	183	18	172	2.21e-60	189
Msa0843850	AT1G74890.1	70.000	130	35	1	10	139	17	142	1.81e-58	184
Msa0843850	AT3G57040.2	57.317	164	57	3	10	162	8	169	6.81e-58	183
Msa0843850	AT3G57040.1	57.317	164	57	3	10	162	8	169	6.81e-58	183

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Find 57 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGTTGTTTCCCAAG+AGG	0.619934	5_4:-21750414	Msa0843850:CDS
AAATGTAGATGCTTGGAGGA+AGG	0.613553	5_4:-21749397	Msa0843850:intron
AACGGTGATGATGAAGGTGA+CGG	0.733254	5_4:+21749121	None:intergenic
AACTCATAACCAGTCATTCC+TGG	0.425647	5_4:+21749931	None:intergenic
AATAAGAGCACTACAATTTC+TGG	0.202396	5_4:-21750138	Msa0843850:CDS
ACAACCAGGGAGGTTAGAGC+GGG	0.595105	5_4:-21749310	Msa0843850:CDS
ACATCTTGCCACGCATTGAC+AGG	0.484895	5_4:-21749740	Msa0843850:intron
ACTAGATCCACCTTCAAACC+AGG	0.592739	5_4:+21749973	None:intergenic
AGAATGTCGGGTGAAGACAA+CGG	0.739291	5_4:+21749103	None:intergenic
AGCACTACAATTTCTGGGGT+TGG	0.454081	5_4:-21750132	Msa0843850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGTTGCTTAAGAAAATCA+AGG	-	chr5_4:21749568-21749587	Msa0843850:intron	30.0%
TGAGTTGCTTAAGAAAATCA+AGG	-	chr5_4:21749568-21749587	Msa0843850:intron	30.0%
ATTACAGATTATTGCATGCC+AGG	-	chr5_4:21749533-21749552	Msa0843850:intron	35.0%
TCCTGCTTCAAATTGAAACT+TGG	+	chr5_4:21749675-21749694	None:intergenic	35.0%
AAAAAATACCTGTCAATGCG+TGG	+	chr5_4:21749753-21749772	None:intergenic	35.0%
GAAAAAATGTAGATGCTTGG+AGG	-	chr5_4:21750081-21750100	Msa0843850:intron	35.0%
TTCACGTCAGATAATTTCAC+TGG	+	chr5_4:21750133-21750152	None:intergenic	35.0%
ATTGGAGAATCAAGAATGTC+GGG	+	chr5_4:21750394-21750413	None:intergenic	35.0%
GATTGGAGAATCAAGAATGT+CGG	+	chr5_4:21750395-21750414	None:intergenic	35.0%
TTCTTGATTCTCCAATCAGA+CGG	-	chr5_4:21750398-21750417	Msa0843850:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	21749060	21750444	21749060	ID=Msa0843850;Name=Msa0843850
chr5_4	mRNA	21749060	21750444	21749060	ID=Msa0843850-mRNA-1;Parent=Msa0843850;Name=Msa0843850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|1\|1\|1\|5\|0\|232
chr5_4	exon	21750336	21750444	21750336	ID=Msa0843850-mRNA-1:exon:8963;Parent=Msa0843850-mRNA-1
chr5_4	exon	21750094	21750179	21750094	ID=Msa0843850-mRNA-1:exon:8962;Parent=Msa0843850-mRNA-1
chr5_4	exon	21749915	21749995	21749915	ID=Msa0843850-mRNA-1:exon:8961;Parent=Msa0843850-mRNA-1
chr5_4	exon	21749741	21749811	21749741	ID=Msa0843850-mRNA-1:exon:8960;Parent=Msa0843850-mRNA-1
chr5_4	exon	21749060	21749411	21749060	ID=Msa0843850-mRNA-1:exon:8959;Parent=Msa0843850-mRNA-1
chr5_4	CDS	21750336	21750444	21750336	ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1
chr5_4	CDS	21750094	21750179	21750094	ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1
chr5_4	CDS	21749915	21749995	21749915	ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1
chr5_4	CDS	21749741	21749811	21749741	ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1
chr5_4	CDS	21749060	21749411	21749060	ID=Msa0843850-mRNA-1:cds;Parent=Msa0843850-mRNA-1

Gene Sequence

>Msa0843850

ATGGAGACAAACAGTGTTGTTTCCCAAGAGGTTCATGTGTTGGCTGTTGATGATAGTCTTGTTGATCGTAAAGTTATTGAAAGGTTGCTCAAAATTTCATCTTGTAAAGTTACTGCAGTGGATAGTGGAATAAGAGCACTACAATTTCTGGGGTTGGTTGATGAGAAAGAGACTTCTGAATCTGATGCTTTTGTTCCTGGTTTGAAGGTGGATCTAGTAATTACAGATTATTGCATGCCAGGAATGACTGGTTATGAGTTGCTTAAGAAAATCAAGGAATCATCCACTTTTAGAGCAATTCCAGTAGTGATCATGTCTTCTGAAAACATCTTGCCACGCATTGACAGATGCTTGGAGGAAGGTGCAGAGGATTTTATAGTGAAGCCAGTGAAATTATCTGACGTGAAACGTTTGAAGGGTTACATGACAACCAGGGAGGTTAGAGCGGGAAGCCAAGACAGTGAAGTTATCGCTACCAACGGTGTTGGTAACGATAACGATGGTGATGGTGTAGGGATAGGGATCAACAACAAAAGGAAGCTAGAAGAAGCATCTGACCTGTCATCATCACCACCGTCCATTTCATCATCAACACTTTCATCACCATCATCATCACCGTCACCTTCATCATCACCGTTGTCTTCACCCGACATTCTTGATTCTCCAATCAGACGGCTTAAAATGACCGGCACCGAATGA

Protein sequence

>Msa0843850

METNSVVSQEVHVLAVDDSLVDRKVIERLLKISSCKVTAVDSGIRALQFLGLVDEKETSESDAFVPGLKVDLVITDYCMPGMTGYELLKKIKESSTFRAIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTREVRAGSQDSEVIATNGVGNDNDGDGVGIGINNKRKLEEASDLSSSPPSISSSTLSSPSSSPSPSSSPLSSPDILDSPIRRLKMTGTE*