AlfalfaGEDB | Msa0845170

M. sativa cultivar zhongmu-4 / Msa0845170

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0845170	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845170	MtrunA17_Chr6g0460941	82.143	28	5	0	12	39	10	37	9.00e-11	52.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 15 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGATATATCGGTGCTGTGTG+GGG	0.631275	5_4:-24106143	Msa0845170:CDS
AGCTCCAAAGACCTTGTGCA+CGG	0.586947	5_4:+24106028	None:intergenic
ATTCTCTGTGGCAGATATAT+CGG	0.488685	5_4:-24106155	Msa0845170:intron
CAGATATATCGGTGCTGTGT+GGG	0.478200	5_4:-24106144	Msa0845170:CDS
CTCTTCAAGTGCTTGCAAGC+AGG	0.450520	5_4:+24106120	None:intergenic
CTGCTTGCAAGCACTTGAAG+AGG	0.588240	5_4:-24106119	Msa0845170:CDS
GCAGATATATCGGTGCTGTG+TGG	0.624107	5_4:-24106145	Msa0845170:intron
GCCGCCGTGCACAAGGTCTT+TGG	0.247339	5_4:-24106032	Msa0845170:CDS
GCGGTGGTTAGTTGGAATAG+TGG	0.521356	5_4:+24105983	None:intergenic
GCTTCTTTGCGGTGGTTAGT+TGG	0.473263	5_4:+24105975	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTTATAACATTGTTGGG+TGG	+	chr5_4:24106037-24106056	None:intergenic	30.0%
GTTGTGACTACATATAGTTG+TGG	+	chr5_4:24106070-24106089	None:intergenic	35.0%
AATTTGTCTGTGATTCTCTG+TGG	-	chr5_4:24106135-24106154	Msa0845170:CDS	35.0%
ATTCTCTGTGGCAGATATAT+CGG	-	chr5_4:24106147-24106166	Msa0845170:intron	35.0%
TGGCACGCCTATAGTTATAT+CGG	-	chr5_4:24106109-24106128	Msa0845170:CDS	40.0%
TTTATGAGGGGAGTGAACGT+TGG	+	chr5_4:24105997-24106016	None:intergenic	45.0%
TGCATCTTTGCACCCTACTT+TGG	-	chr5_4:24106221-24106240	Msa0845170:intron	45.0%
CTCTTCAAGTGCTTGCAAGC+AGG	+	chr5_4:24106185-24106204	None:intergenic	50.0%
CTGCTTGCAAGCACTTGAAG+AGG	-	chr5_4:24106183-24106202	Msa0845170:intron	50.0%
AGCTCCAAAGACCTTGTGCA+CGG	+	chr5_4:24106277-24106296	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	24105990	24106334	24105990	ID=Msa0845170;Name=Msa0845170
chr5_4	mRNA	24105990	24106334	24105990	ID=Msa0845170-mRNA-1;Parent=Msa0845170;Name=Msa0845170-mRNA-1;_AED=0.50;_eAED=0.71;_QI=0\|0\|0\|0.5\|0\|0\|2\|0\|60
chr5_4	exon	24106326	24106334	24106326	ID=Msa0845170-mRNA-1:exon:9792;Parent=Msa0845170-mRNA-1
chr5_4	exon	24105990	24106163	24105990	ID=Msa0845170-mRNA-1:exon:9791;Parent=Msa0845170-mRNA-1
chr5_4	CDS	24106326	24106334	24106326	ID=Msa0845170-mRNA-1:cds;Parent=Msa0845170-mRNA-1
chr5_4	CDS	24105990	24106163	24105990	ID=Msa0845170-mRNA-1:cds;Parent=Msa0845170-mRNA-1

Gene Sequence	>Msa0845170 ATGACCAACATATATCGGTGCTGTGTGGGGCCTGCTTGCAAGCACTTGAAGAGGAAGTGTATTAATGGATGCATCTTTGCACCCTACTTTGGTACAGACCAAAATGCAGCTAGCTTTTGCCGCCGTGCACAAGGTCTTTGGAGCTGGCAATGTGTCGAAGCTCTTGTCCACTATTCCAACTAA
Protein sequence	>Msa0845170 MTNIYRCCVGPACKHLKRKCINGCIFAPYFGTDQNAASFCRRAQGLWSWQCVEALVHYSN*