Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845360 | XP_013448301.1 | 86.188 | 362 | 34 | 2 | 1 | 362 | 1 | 346 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845360 | sp|Q8RWD7|EMB74_ARATH | 40.708 | 113 | 60 | 3 | 22 | 132 | 64 | 171 | 1.03e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845360 | A0A072TZN4 | 86.188 | 362 | 34 | 2 | 1 | 362 | 1 | 346 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0845360 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845360 | MtrunA17_Chr7g0231611 | 86.188 | 362 | 34 | 2 | 1 | 362 | 1 | 346 | 0.0 | 628 |
| Msa0845360 | MtrunA17_Chr5g0416851 | 86.464 | 362 | 33 | 2 | 1 | 362 | 1 | 346 | 0.0 | 612 |
| Msa0845360 | MtrunA17_Chr2g0282701 | 74.906 | 267 | 36 | 3 | 96 | 362 | 42 | 277 | 4.57e-129 | 371 |
| Msa0845360 | MtrunA17_Chr1g0182611 | 35.664 | 143 | 76 | 7 | 1 | 132 | 1 | 138 | 1.45e-17 | 84.0 |
| Msa0845360 | MtrunA17_Chr1g0182621 | 38.947 | 95 | 49 | 3 | 22 | 110 | 28 | 119 | 3.74e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845360 | AT1G58210.1 | 40.708 | 113 | 60 | 3 | 22 | 132 | 64 | 171 | 1.05e-18 | 85.5 |
| Msa0845360 | AT5G02520.2 | 34.737 | 95 | 55 | 2 | 22 | 110 | 17 | 110 | 4.09e-12 | 67.8 |
| Msa0845360 | AT5G02520.1 | 34.737 | 95 | 55 | 2 | 22 | 110 | 17 | 110 | 4.13e-12 | 67.8 |
| Msa0845360 | AT5G02520.3 | 34.737 | 95 | 55 | 2 | 22 | 110 | 17 | 110 | 4.28e-12 | 67.8 |
Find 88 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATTACCCAAACAAAAT+TGG | 0.200502 | 5_4:+24420903 | Msa0845360:five_prime_UTR |
| GTGTGGTGGTGGACCGTATT+GGG | 0.235124 | 5_4:-24422112 | None:intergenic |
| ATCCTCTACAATCTTCTTCT+TGG | 0.240672 | 5_4:-24424091 | None:intergenic |
| TTTCTCTTGCATTGATTCAT+AGG | 0.243951 | 5_4:+24420928 | Msa0845360:five_prime_UTR |
| TTACCTTCTACCTTCCCTTT+TGG | 0.249599 | 5_4:-24421996 | None:intergenic |
| ATCCTCTACAATCTTCTTCT+TGG | 0.277613 | 5_4:-24424124 | None:intergenic |
| TATATTACCCAAACAAAATT+GGG | 0.299350 | 5_4:+24420904 | Msa0845360:five_prime_UTR |
| GTGATTTATAATGGTGAAAA+TGG | 0.304153 | 5_4:+24423703 | Msa0845360:CDS |
| GTGATTTCTAATGGTGAAAA+TGG | 0.304848 | 5_4:+24423913 | Msa0845360:CDS |
| ACAGGTATGTCGCCGTTTCT+CGG | 0.307703 | 5_4:+24423489 | Msa0845360:intron |
| CGGTTGGATTTCCACACAAT+TGG | 0.311637 | 5_4:+24423509 | Msa0845360:CDS |
| GAAAATGTGGATAAAGTTAC+TGG | 0.316089 | 5_4:+24423568 | Msa0845360:CDS |
| AGTGGAGATCTAACACTATT+TGG | 0.318692 | 5_4:-24424009 | None:intergenic |
| TTCAATTTCTTTGCGTAAAG+TGG | 0.326249 | 5_4:-24424027 | None:intergenic |
| TACCTGTGTTATCGTGGTTT+CGG | 0.335763 | 5_4:-24420968 | None:intergenic |
| AATTATTCAGCTCATGGTTC+GGG | 0.340243 | 5_4:+24423535 | Msa0845360:CDS |
| AAGTCACACGATGCTTAAAA+AGG | 0.345125 | 5_4:+24424197 | Msa0845360:CDS |
| GCCTCACGTACGTCTCAAAA+TGG | 0.354055 | 5_4:+24422526 | Msa0845360:CDS |
| CAAGTTGGCGTGATTTATAA+TGG | 0.364333 | 5_4:+24423694 | Msa0845360:CDS |
| CCTCCAAAAGGGAAGGTAGA+AGG | 0.370961 | 5_4:+24421993 | Msa0845360:five_prime_UTR |
| TGCAAGGGTTTAGCTCTTGC+TGG | 0.372413 | 5_4:+24422302 | Msa0845360:CDS |
| GCTAAACCCTTGCATTGGTT+TGG | 0.379957 | 5_4:-24422293 | None:intergenic |
| GGTGGACCGTATTGGGGTCT+TGG | 0.380705 | 5_4:-24422105 | None:intergenic |
| GGTGTGGTGGTGGACCGTAT+TGG | 0.388317 | 5_4:-24422113 | None:intergenic |
| TCCTGCGAAGTTTCATCAGC+TGG | 0.402006 | 5_4:-24423769 | None:intergenic |
| TCTTGCTGGCATTGCTTCAA+TGG | 0.402134 | 5_4:+24422316 | Msa0845360:CDS |
| TGAAACTTCGCAGGAAGATA+TGG | 0.405006 | 5_4:+24423777 | Msa0845360:CDS |
| AAATTATTCAGCTCATGGTT+CGG | 0.408856 | 5_4:+24423534 | Msa0845360:CDS |
| CTGGTAACTTGTGTAGTAGT+AGG | 0.423638 | 5_4:+24424148 | Msa0845360:CDS |
| GTTAGAGAGGGGTGTGGTGG+TGG | 0.426907 | 5_4:-24422123 | None:intergenic |
| TGTGGTGGTGGACCGTATTG+GGG | 0.428452 | 5_4:-24422111 | None:intergenic |
| CAGGTTGACGTGATTTCTAA+TGG | 0.433158 | 5_4:+24423904 | Msa0845360:CDS |
| GTTGTCTCAACCGGAAGATA+TGG | 0.434488 | 5_4:+24423834 | Msa0845360:CDS |
| TTTGAAGATTGAGTTAGAGA+GGG | 0.439542 | 5_4:-24422135 | None:intergenic |
| AAGAAGATTGTAGAGGATAC+TGG | 0.442437 | 5_4:+24424129 | Msa0845360:CDS |
| AAACCCTTGCATTGGTTTGG+AGG | 0.442882 | 5_4:-24422290 | None:intergenic |
| ATCTTGAGTCTCTACAACAT+TGG | 0.448912 | 5_4:-24422470 | None:intergenic |
| GCAATGTTGTCATTACCTTC+AGG | 0.449864 | 5_4:-24423802 | None:intergenic |
| GAAGGTAATGACAACATTGC+GGG | 0.450334 | 5_4:+24423805 | Msa0845360:CDS |
| TTCTCTTGCATTGATTCATA+GGG | 0.451642 | 5_4:+24420929 | Msa0845360:five_prime_UTR |
| TTTGTTTGGGTAATATATGT+GGG | 0.455413 | 5_4:-24420898 | None:intergenic |
| CCTTCCGATTCCATATCTTC+CGG | 0.456341 | 5_4:-24423844 | None:intergenic |
| ATTTGAAGATTGAGTTAGAG+AGG | 0.456681 | 5_4:-24422136 | None:intergenic |
| TCTTGAGTCTCTACAACATT+GGG | 0.460912 | 5_4:-24422469 | None:intergenic |
| GGGTCTTAAGTTGTCTCAAC+CGG | 0.462850 | 5_4:+24423825 | Msa0845360:CDS |
| AGCCTGGTAGATCTTCTAAC+AGG | 0.463228 | 5_4:-24424252 | None:intergenic |
| GTATGTCGCCGTTTCTCGGT+TGG | 0.465222 | 5_4:+24423493 | Msa0845360:CDS |
| ACAACAATATTGCGAGTGTA+AGG | 0.490252 | 5_4:+24423659 | Msa0845360:CDS |
| TTGAAGATTGAGTTAGAGAG+GGG | 0.494458 | 5_4:-24422134 | None:intergenic |
| TCATGGTTCGGGAAATGAAT+GGG | 0.496759 | 5_4:+24423546 | Msa0845360:CDS |
| ATCTAACACTATTTGGCTCA+TGG | 0.496988 | 5_4:-24424002 | None:intergenic |
| GTGGAAATCCAACCGAGAAA+CGG | 0.509162 | 5_4:-24423501 | None:intergenic |
| CTCATGGTTCGGGAAATGAA+TGG | 0.521512 | 5_4:+24423545 | Msa0845360:CDS |
| CAAGAGCTAAACCCTTGCAT+TGG | 0.528805 | 5_4:-24422298 | None:intergenic |
| TGAGTTAGAGAGGGGTGTGG+TGG | 0.542972 | 5_4:-24422126 | None:intergenic |
| TCTAACACTATTTGGCTCAT+GGG | 0.544732 | 5_4:-24424001 | None:intergenic |
| CTGTGTTATCGTGGTTTCGG+AGG | 0.545214 | 5_4:-24420965 | None:intergenic |
| TGGTAACTTGTGTAGTAGTA+GGG | 0.548652 | 5_4:+24424149 | Msa0845360:CDS |
| GGGAAATGAATGGGAAAATG+TGG | 0.555111 | 5_4:+24423555 | Msa0845360:CDS |
| TCAACCGGAAGATATGGAAT+CGG | 0.567277 | 5_4:+24423840 | Msa0845360:CDS |
| AGGAGAAGTGAAACATTTCA+CGG | 0.569635 | 5_4:-24424232 | None:intergenic |
| ACCAGCTGATGAAACTTCGC+AGG | 0.571677 | 5_4:+24423768 | Msa0845360:CDS |
| TTATAAATCACGCCAACTTG+TGG | 0.575534 | 5_4:-24423691 | None:intergenic |
| GAGAATTACCTGTGTTATCG+TGG | 0.576982 | 5_4:-24420974 | None:intergenic |
| CTCCTGTTAGAAGATCTACC+AGG | 0.582686 | 5_4:+24424250 | Msa0845360:CDS |
| ACACTATTTGGCTCATGGGT+AGG | 0.583997 | 5_4:-24423997 | None:intergenic |
| CGAATTATCAAGTGACCGCA+AGG | 0.593011 | 5_4:+24424056 | Msa0845360:CDS |
| ATATTACCCAAACAAAATTG+GGG | 0.593906 | 5_4:+24420905 | Msa0845360:five_prime_UTR |
| AACAGTCGATGAGACTTCAC+AGG | 0.601831 | 5_4:+24423624 | Msa0845360:CDS |
| TGGCTTCCAAGACCCCAATA+CGG | 0.605001 | 5_4:+24422099 | Msa0845360:CDS |
| CGTTGACAAGAAAATCAGAA+TGG | 0.605012 | 5_4:+24422079 | Msa0845360:exon |
| GAAACCTCCAAACCAATGCA+AGG | 0.605866 | 5_4:+24422286 | Msa0845360:CDS |
| TTGTTTGGGTAATATATGTG+GGG | 0.610187 | 5_4:-24420897 | None:intergenic |
| TGGTACGTTTCTTATCCTTG+CGG | 0.610799 | 5_4:-24424071 | None:intergenic |
| GGCATCACTGTAATCTTCCG+CGG | 0.614423 | 5_4:+24422493 | Msa0845360:CDS |
| CCGGAAGATATGGAATCGGA+AGG | 0.628650 | 5_4:+24423844 | Msa0845360:CDS |
| AAACCTCCAAACCAATGCAA+GGG | 0.637222 | 5_4:+24422287 | Msa0845360:CDS |
| CAGGAAGATATGGAACCTGA+AGG | 0.637635 | 5_4:+24423787 | Msa0845360:CDS |
| GATTGAGTTAGAGAGGGGTG+TGG | 0.641322 | 5_4:-24422129 | None:intergenic |
| CTCCGAAACCACGATAACAC+AGG | 0.642190 | 5_4:+24420966 | Msa0845360:five_prime_UTR |
| GAGACTTCACAGGAAGCTGA+AGG | 0.645447 | 5_4:+24423634 | Msa0845360:CDS |
| AATGTTGTAGAGACTCAAGA+TGG | 0.656225 | 5_4:+24422472 | Msa0845360:CDS |
| AGGTTGTCTCAACCACAAGT+TGG | 0.660440 | 5_4:+24423679 | Msa0845360:CDS |
| TACCAAGAAGAAGATTGTAG+AGG | 0.672640 | 5_4:+24424089 | Msa0845360:CDS |
| TACCAAGAAGAAGATTGTAG+AGG | 0.672640 | 5_4:+24424122 | Msa0845360:CDS |
| TGAAGGTAATGACAACATTG+CGG | 0.680073 | 5_4:+24423804 | Msa0845360:CDS |
| TTAGAAATCACGTCAACCTG+CGG | 0.710726 | 5_4:-24423901 | None:intergenic |
| GTGAGGCGTTAATCAAACCG+CGG | 0.757884 | 5_4:-24422510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAACTTTTTTTTAAAAACT+CGG | - | chr5_4:24421411-24421430 | None:intergenic | 10.0% |
| !!! | TTTTTTTCATTTTCATTTTT+AGG | + | chr5_4:24422344-24422363 | Msa0845360:intron | 10.0% |
| !! | TTAATTATGAAATGAATAAG+TGG | + | chr5_4:24421944-24421963 | Msa0845360:intron | 15.0% |
| !! | ATATATTACCCAAACAAAAT+TGG | + | chr5_4:24420903-24420922 | Msa0845360:five_prime_UTR | 20.0% |
| !! | TATATTACCCAAACAAAATT+GGG | + | chr5_4:24420904-24420923 | Msa0845360:five_prime_UTR | 20.0% |
| !!! | TCGATTGTTAAAGTTTTTTT+GGG | + | chr5_4:24421701-24421720 | Msa0845360:intron | 20.0% |
| !!! | TTCATTTTTAGGTTTCTAAT+TGG | + | chr5_4:24422355-24422374 | Msa0845360:intron | 20.0% |
| !! | TAATTACTTATTGTGACTAT+TGG | + | chr5_4:24422391-24422410 | Msa0845360:intron | 20.0% |
| !! | TTGAATATAATTAGTGTGTT+TGG | + | chr5_4:24422644-24422663 | Msa0845360:intron | 20.0% |
| !!! | TTTTTGTATCAAACTTTCTT+TGG | - | chr5_4:24423030-24423049 | None:intergenic | 20.0% |
| !!! | ATCAATCATTCAGTTTTATT+TGG | + | chr5_4:24423222-24423241 | Msa0845360:intron | 20.0% |
| !!! | TGTCAAAAAGTATAGATTTT+GGG | - | chr5_4:24423347-24423366 | None:intergenic | 20.0% |
| !!! | TTGTCAAAAAGTATAGATTT+TGG | - | chr5_4:24423348-24423367 | None:intergenic | 20.0% |
| !! | AAAATACTCATAATCTTCAA+TGG | + | chr5_4:24423389-24423408 | Msa0845360:intron | 20.0% |
| !!! | TTTTTTATAATTTAGTAGCC+TGG | - | chr5_4:24424271-24424290 | None:intergenic | 20.0% |
| ! | TTTGTTTGGGTAATATATGT+GGG | - | chr5_4:24420901-24420920 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGGGTAATATATG+TGG | - | chr5_4:24420902-24420921 | None:intergenic | 25.0% |
| ! | ATATTACCCAAACAAAATTG+GGG | + | chr5_4:24420905-24420924 | Msa0845360:five_prime_UTR | 25.0% |
| ! | AGTGCATAAAAAAAAGAACT+GGG | - | chr5_4:24421058-24421077 | None:intergenic | 25.0% |
| ! | AAGTGCATAAAAAAAAGAAC+TGG | - | chr5_4:24421059-24421078 | None:intergenic | 25.0% |
| ! | TTTACAGTCACAAATATAAC+AGG | - | chr5_4:24421172-24421191 | None:intergenic | 25.0% |
| !!! | TTTTTTAAAAACTCGGTATC+CGG | - | chr5_4:24421404-24421423 | None:intergenic | 25.0% |
| ! | ACAAAATTAAAACATAGTGC+TGG | - | chr5_4:24421439-24421458 | None:intergenic | 25.0% |
| ! | ATTACGAAACTCAAAGAAAT+GGG | - | chr5_4:24421572-24421591 | None:intergenic | 25.0% |
| ! | TATTACGAAACTCAAAGAAA+TGG | - | chr5_4:24421573-24421592 | None:intergenic | 25.0% |
| !!! | GTCGATTGTTAAAGTTTTTT+TGG | + | chr5_4:24421700-24421719 | Msa0845360:intron | 25.0% |
| ! | TTATTTCACACAGATTATGA+AGG | - | chr5_4:24421835-24421854 | None:intergenic | 25.0% |
| ! | ATATGTCAATTATTGTGAGA+TGG | + | chr5_4:24421859-24421878 | Msa0845360:intron | 25.0% |
| !! | TGTAGATTTTCTTACATGAA+TGG | + | chr5_4:24422255-24422274 | Msa0845360:intron | 25.0% |
| ! | TTTCTAATTGGTTATCTGTT+TGG | + | chr5_4:24422367-24422386 | Msa0845360:intron | 25.0% |
| ! | TTCTAATTGGTTATCTGTTT+GGG | + | chr5_4:24422368-24422387 | Msa0845360:intron | 25.0% |
| ! | AGAGGAATGAAAAAGAAAAA+GGG | - | chr5_4:24422573-24422592 | None:intergenic | 25.0% |
| ! | AAGAGGAATGAAAAAGAAAA+AGG | - | chr5_4:24422574-24422593 | None:intergenic | 25.0% |
| !! | TTGAGAGTACAAATCAAATT+TGG | + | chr5_4:24422787-24422806 | Msa0845360:intron | 25.0% |
| !!! | TTAGATTTCACTTTTAAGAG+AGG | - | chr5_4:24422927-24422946 | None:intergenic | 25.0% |
| ! | TGATTGATAAACCTCAATTA+TGG | - | chr5_4:24423210-24423229 | None:intergenic | 25.0% |
| ! | AACAAAGCTAGCAAAAATAT+AGG | - | chr5_4:24423261-24423280 | None:intergenic | 25.0% |
| !!! | ATATTTTTGCTAGCTTTGTT+AGG | + | chr5_4:24423261-24423280 | Msa0845360:intron | 25.0% |
| !!! | TATTGACGCATTTAATTTTC+TGG | + | chr5_4:24423447-24423466 | Msa0845360:intron | 25.0% |
| ! | AATATTCAATGTCTTTCTAC+AGG | + | chr5_4:24423471-24423490 | Msa0845360:intron | 25.0% |
| !! | GAATAATTTTTCCAATTGTG+TGG | - | chr5_4:24423523-24423542 | None:intergenic | 25.0% |
| ! | GTGATTTATAATGGTGAAAA+TGG | + | chr5_4:24423703-24423722 | Msa0845360:CDS | 25.0% |
| !! | TTTCTCTTGCATTGATTCAT+AGG | + | chr5_4:24420928-24420947 | Msa0845360:five_prime_UTR | 30.0% |
| !! | TTCTCTTGCATTGATTCATA+GGG | + | chr5_4:24420929-24420948 | Msa0845360:five_prime_UTR | 30.0% |
| TCAGTTCAAACAAAAGACAT+GGG | - | chr5_4:24421021-24421040 | None:intergenic | 30.0% | |
| ATCAGTTCAAACAAAAGACA+TGG | - | chr5_4:24421022-24421041 | None:intergenic | 30.0% | |
| AAAAAAAAGAACTGGGAATC+TGG | - | chr5_4:24421051-24421070 | None:intergenic | 30.0% | |
| GAATTTGAACAAAGTCTATG+AGG | - | chr5_4:24421100-24421119 | None:intergenic | 30.0% | |
| ! | ATACTTCCAATTTTCTGCAA+AGG | + | chr5_4:24421208-24421227 | Msa0845360:intron | 30.0% |
| ATTCTGATTCTCTAGTTAGT+GGG | + | chr5_4:24421473-24421492 | Msa0845360:intron | 30.0% | |
| AATGGGAACAAATGAGATAA+TGG | - | chr5_4:24421555-24421574 | None:intergenic | 30.0% | |
| ! | GCATCGATACATGTTTATAT+CGG | - | chr5_4:24421610-24421629 | None:intergenic | 30.0% |
| ATAAGTGGTTGAACATGTTT+AGG | + | chr5_4:24421959-24421978 | Msa0845360:intron | 30.0% | |
| TTTGAAGATTGAGTTAGAGA+GGG | - | chr5_4:24422138-24422157 | None:intergenic | 30.0% | |
| ATTTGAAGATTGAGTTAGAG+AGG | - | chr5_4:24422139-24422158 | None:intergenic | 30.0% | |
| ! | AGATTTTCTTACATGAATGG+TGG | + | chr5_4:24422258-24422277 | Msa0845360:intron | 30.0% |
| ! | TCAAAATGGTTTTTCTTCTG+AGG | + | chr5_4:24422540-24422559 | Msa0845360:CDS | 30.0% |
| !! | CGAGTTAGAATTCATTTTTG+TGG | + | chr5_4:24422835-24422854 | Msa0845360:intron | 30.0% |
| ATGAAGTAACACACACAAAA+AGG | - | chr5_4:24423100-24423119 | None:intergenic | 30.0% | |
| !! | TGAACTTTGAAACTATCACT+TGG | - | chr5_4:24423166-24423185 | None:intergenic | 30.0% |
| TGGAAAAATTATTCAGCTCA+TGG | + | chr5_4:24423529-24423548 | Msa0845360:CDS | 30.0% | |
| AAATTATTCAGCTCATGGTT+CGG | + | chr5_4:24423534-24423553 | Msa0845360:CDS | 30.0% | |
| GAAAATGTGGATAAAGTTAC+TGG | + | chr5_4:24423568-24423587 | Msa0845360:CDS | 30.0% | |
| GTGATTTCTAATGGTGAAAA+TGG | + | chr5_4:24423913-24423932 | Msa0845360:CDS | 30.0% | |
| TTCAATTTCTTTGCGTAAAG+TGG | - | chr5_4:24424030-24424049 | None:intergenic | 30.0% | |
| !! | GAGAAACCCCAATTTTGTTT+GGG | - | chr5_4:24420914-24420933 | None:intergenic | 35.0% |
| ! | AGAGAAACCCCAATTTTGTT+TGG | - | chr5_4:24420915-24420934 | None:intergenic | 35.0% |
| AACTCTCCTTTGCAGAAAAT+TGG | - | chr5_4:24421217-24421236 | None:intergenic | 35.0% | |
| ! | ATTTGCAACCCATTTGAGTT+TGG | + | chr5_4:24421254-24421273 | Msa0845360:intron | 35.0% |
| GTCTCAGGTTTGATTCTATT+CGG | + | chr5_4:24421321-24421340 | Msa0845360:intron | 35.0% | |
| ! | TCATTTTCACAAGTGGTTTG+TGG | + | chr5_4:24421346-24421365 | Msa0845360:intron | 35.0% |
| !! | CATTTTCACAAGTGGTTTGT+GGG | + | chr5_4:24421347-24421366 | Msa0845360:intron | 35.0% |
| GATTCTGATTCTCTAGTTAG+TGG | + | chr5_4:24421472-24421491 | Msa0845360:intron | 35.0% | |
| CGTTGACAAGAAAATCAGAA+TGG | + | chr5_4:24422079-24422098 | Msa0845360:exon | 35.0% | |
| TTGAAGATTGAGTTAGAGAG+GGG | - | chr5_4:24422137-24422156 | None:intergenic | 35.0% | |
| AACAAGAGAGAAGAGTGAAT+GGG | - | chr5_4:24422176-24422195 | None:intergenic | 35.0% | |
| AAACAAGAGAGAAGAGTGAA+TGG | - | chr5_4:24422177-24422196 | None:intergenic | 35.0% | |
| TCTTGAGTCTCTACAACATT+GGG | - | chr5_4:24422472-24422491 | None:intergenic | 35.0% | |
| ATCTTGAGTCTCTACAACAT+TGG | - | chr5_4:24422473-24422492 | None:intergenic | 35.0% | |
| AATGTTGTAGAGACTCAAGA+TGG | + | chr5_4:24422472-24422491 | Msa0845360:CDS | 35.0% | |
| !! | AAATGGTTTTTCTTCTGAGG+TGG | + | chr5_4:24422543-24422562 | Msa0845360:intron | 35.0% |
| !!! | AATGGTTTTTCTTCTGAGGT+GGG | + | chr5_4:24422544-24422563 | Msa0845360:intron | 35.0% |
| AACATGTCAACAATAGTGTC+TGG | + | chr5_4:24422888-24422907 | Msa0845360:intron | 35.0% | |
| !! | TAGTGTCTGGAATCACTTTT+AGG | + | chr5_4:24422901-24422920 | Msa0845360:intron | 35.0% |
| !! | TGTGTGTTACTTCATGTTCA+TGG | + | chr5_4:24423105-24423124 | Msa0845360:intron | 35.0% |
| !! | GTGTGTTACTTCATGTTCAT+GGG | + | chr5_4:24423106-24423125 | Msa0845360:intron | 35.0% |
| ! | AACCTCAATTATGGATTGTG+TGG | - | chr5_4:24423201-24423220 | None:intergenic | 35.0% |
| AATTATTCAGCTCATGGTTC+GGG | + | chr5_4:24423535-24423554 | Msa0845360:CDS | 35.0% | |
| !!! | CTCATCGACTGTTTTTTTGT+GGG | - | chr5_4:24423617-24423636 | None:intergenic | 35.0% |
| !!! | TCTCATCGACTGTTTTTTTG+TGG | - | chr5_4:24423618-24423637 | None:intergenic | 35.0% |
| ACAACAATATTGCGAGTGTA+AGG | + | chr5_4:24423659-24423678 | Msa0845360:CDS | 35.0% | |
| TTATAAATCACGCCAACTTG+TGG | - | chr5_4:24423694-24423713 | None:intergenic | 35.0% | |
| ! | CAAGTTGGCGTGATTTATAA+TGG | + | chr5_4:24423694-24423713 | Msa0845360:CDS | 35.0% |
| !!! | TTCATCAGCTGGTTTTTTGA+GGG | - | chr5_4:24423761-24423780 | None:intergenic | 35.0% |
| !!! | TTTCATCAGCTGGTTTTTTG+AGG | - | chr5_4:24423762-24423781 | None:intergenic | 35.0% |
| TGAAGGTAATGACAACATTG+CGG | + | chr5_4:24423804-24423823 | Msa0845360:CDS | 35.0% | |
| ! | TCTAACACTATTTGGCTCAT+GGG | - | chr5_4:24424004-24424023 | None:intergenic | 35.0% |
| ! | ATCTAACACTATTTGGCTCA+TGG | - | chr5_4:24424005-24424024 | None:intergenic | 35.0% |
| AGTGGAGATCTAACACTATT+TGG | - | chr5_4:24424012-24424031 | None:intergenic | 35.0% | |
| TACCAAGAAGAAGATTGTAG+AGG | + | chr5_4:24424089-24424108 | Msa0845360:CDS | 35.0% | |
| ATCCTCTACAATCTTCTTCT+TGG | - | chr5_4:24424094-24424113 | None:intergenic | 35.0% | |
| TACCAAGAAGAAGATTGTAG+AGG | + | chr5_4:24424089-24424108 | Msa0845360:CDS | 35.0% | |
| ATCCTCTACAATCTTCTTCT+TGG | - | chr5_4:24424094-24424113 | None:intergenic | 35.0% | |
| AAGAAGATTGTAGAGGATAC+TGG | + | chr5_4:24424129-24424148 | Msa0845360:CDS | 35.0% | |
| ! | TGGTAACTTGTGTAGTAGTA+GGG | + | chr5_4:24424149-24424168 | Msa0845360:CDS | 35.0% |
| AAGTCACACGATGCTTAAAA+AGG | + | chr5_4:24424197-24424216 | Msa0845360:CDS | 35.0% | |
| ACACGATGCTTAAAAAGGAT+GGG | + | chr5_4:24424202-24424221 | Msa0845360:CDS | 35.0% | |
| AGGAGAAGTGAAACATTTCA+CGG | - | chr5_4:24424235-24424254 | None:intergenic | 35.0% | |
| TACCTGTGTTATCGTGGTTT+CGG | - | chr5_4:24420971-24420990 | None:intergenic | 40.0% | |
| GAGAATTACCTGTGTTATCG+TGG | - | chr5_4:24420977-24420996 | None:intergenic | 40.0% | |
| !!! | TTCGGTGTCATTTTCACAAG+TGG | + | chr5_4:24421339-24421358 | Msa0845360:intron | 40.0% |
| GCTTAATCTCATGAACTCAG+TGG | + | chr5_4:24421628-24421647 | Msa0845360:intron | 40.0% | |
| ACGCACATGTACTACTTACA+AGG | - | chr5_4:24421682-24421701 | None:intergenic | 40.0% | |
| !! | CACAGATTATGAAGGCATCA+TGG | - | chr5_4:24421827-24421846 | None:intergenic | 40.0% |
| GTCAATTATTGTGAGATGGC+AGG | + | chr5_4:24421863-24421882 | Msa0845360:intron | 40.0% | |
| ! | AGCGAAGTTTTCCTCCAAAA+GGG | + | chr5_4:24421982-24422001 | Msa0845360:five_prime_UTR | 40.0% |
| ! | AAGTTTTCCTCCAAAAGGGA+AGG | + | chr5_4:24421986-24422005 | Msa0845360:five_prime_UTR | 40.0% |
| ! | TTACCTTCTACCTTCCCTTT+TGG | - | chr5_4:24421999-24422018 | None:intergenic | 40.0% |
| AAACCTCCAAACCAATGCAA+GGG | + | chr5_4:24422287-24422306 | Msa0845360:CDS | 40.0% | |
| ATTCCTCTTGACCCTTATCT+AGG | + | chr5_4:24422585-24422604 | Msa0845360:intron | 40.0% | |
| AATACCACGAGCCTAGATAA+GGG | - | chr5_4:24422599-24422618 | None:intergenic | 40.0% | |
| AAATACCACGAGCCTAGATA+AGG | - | chr5_4:24422600-24422619 | None:intergenic | 40.0% | |
| AAACTATCACTTGGAGCTTC+AGG | - | chr5_4:24423157-24423176 | None:intergenic | 40.0% | |
| CTCCACACAATCCATAATTG+AGG | + | chr5_4:24423196-24423215 | Msa0845360:intron | 40.0% | |
| ! | GAGACATGAGATTTAGAGTC+TGG | + | chr5_4:24423302-24423321 | Msa0845360:intron | 40.0% |
| !!! | ATAGATTTTGGGTTCCTGTC+AGG | - | chr5_4:24423336-24423355 | None:intergenic | 40.0% |
| AATACCCTTGTGTGTGATTG+TGG | + | chr5_4:24423420-24423439 | Msa0845360:intron | 40.0% | |
| ! | TCATGGTTCGGGAAATGAAT+GGG | + | chr5_4:24423546-24423565 | Msa0845360:CDS | 40.0% |
| GGGAAATGAATGGGAAAATG+TGG | + | chr5_4:24423555-24423574 | Msa0845360:CDS | 40.0% | |
| TGAAACTTCGCAGGAAGATA+TGG | + | chr5_4:24423777-24423796 | Msa0845360:CDS | 40.0% | |
| GCAATGTTGTCATTACCTTC+AGG | - | chr5_4:24423805-24423824 | None:intergenic | 40.0% | |
| GAAGGTAATGACAACATTGC+GGG | + | chr5_4:24423805-24423824 | Msa0845360:CDS | 40.0% | |
| TCAACCGGAAGATATGGAAT+CGG | + | chr5_4:24423840-24423859 | Msa0845360:CDS | 40.0% | |
| !!! | TTTTGATTTGTCTCAACCGC+AGG | + | chr5_4:24423885-24423904 | Msa0845360:CDS | 40.0% |
| TTAGAAATCACGTCAACCTG+CGG | - | chr5_4:24423904-24423923 | None:intergenic | 40.0% | |
| ! | CAGGTTGACGTGATTTCTAA+TGG | + | chr5_4:24423904-24423923 | Msa0845360:CDS | 40.0% |
| TGGTACGTTTCTTATCCTTG+CGG | - | chr5_4:24424074-24424093 | None:intergenic | 40.0% | |
| ! | CTGGTAACTTGTGTAGTAGT+AGG | + | chr5_4:24424148-24424167 | Msa0845360:CDS | 40.0% |
| !! | AAGCATCGTGTGACTTTTCT+TGG | - | chr5_4:24424193-24424212 | None:intergenic | 40.0% |
| CACACGATGCTTAAAAAGGA+TGG | + | chr5_4:24424201-24424220 | Msa0845360:CDS | 40.0% | |
| ATCAAACCTGAGACCTTGAG+AGG | - | chr5_4:24421315-24421334 | None:intergenic | 45.0% | |
| ATTAGACCCCTCAGATTCGT+CGG | + | chr5_4:24421370-24421389 | Msa0845360:intron | 45.0% | |
| ! | GAGCGAAGTTTTCCTCCAAA+AGG | + | chr5_4:24421981-24422000 | Msa0845360:five_prime_UTR | 45.0% |
| GAAACCTCCAAACCAATGCA+AGG | + | chr5_4:24422286-24422305 | Msa0845360:CDS | 45.0% | |
| !! | AAACCCTTGCATTGGTTTGG+AGG | - | chr5_4:24422293-24422312 | None:intergenic | 45.0% |
| !! | GCTAAACCCTTGCATTGGTT+TGG | - | chr5_4:24422296-24422315 | None:intergenic | 45.0% |
| CAAGAGCTAAACCCTTGCAT+TGG | - | chr5_4:24422301-24422320 | None:intergenic | 45.0% | |
| TCTTGCTGGCATTGCTTCAA+TGG | + | chr5_4:24422316-24422335 | Msa0845360:CDS | 45.0% | |
| ! | TTGTGACTATTGGTGCTTGC+AGG | + | chr5_4:24422401-24422420 | Msa0845360:intron | 45.0% |
| !!! | ACCATTTTGAGACGTACGTG+AGG | - | chr5_4:24422530-24422549 | None:intergenic | 45.0% |
| ACAGCCACAATCACACACAA+GGG | - | chr5_4:24423427-24423446 | None:intergenic | 45.0% | |
| AACAGCCACAATCACACACA+AGG | - | chr5_4:24423428-24423447 | None:intergenic | 45.0% | |
| GTGGAAATCCAACCGAGAAA+CGG | - | chr5_4:24423504-24423523 | None:intergenic | 45.0% | |
| CGGTTGGATTTCCACACAAT+TGG | + | chr5_4:24423509-24423528 | Msa0845360:CDS | 45.0% | |
| ! | CTCATGGTTCGGGAAATGAA+TGG | + | chr5_4:24423545-24423564 | Msa0845360:CDS | 45.0% |
| AACAGTCGATGAGACTTCAC+AGG | + | chr5_4:24423624-24423643 | Msa0845360:CDS | 45.0% | |
| AGGTTGTCTCAACCACAAGT+TGG | + | chr5_4:24423679-24423698 | Msa0845360:CDS | 45.0% | |
| CAGGAAGATATGGAACCTGA+AGG | + | chr5_4:24423787-24423806 | Msa0845360:CDS | 45.0% | |
| ! | GGGTCTTAAGTTGTCTCAAC+CGG | + | chr5_4:24423825-24423844 | Msa0845360:CDS | 45.0% |
| GTTGTCTCAACCGGAAGATA+TGG | + | chr5_4:24423834-24423853 | Msa0845360:CDS | 45.0% | |
| CCTTCCGATTCCATATCTTC+CGG | - | chr5_4:24423847-24423866 | None:intergenic | 45.0% | |
| ! | ACACTATTTGGCTCATGGGT+AGG | - | chr5_4:24424000-24424019 | None:intergenic | 45.0% |
| CGAATTATCAAGTGACCGCA+AGG | + | chr5_4:24424056-24424075 | Msa0845360:CDS | 45.0% | |
| CTCCTGTTAGAAGATCTACC+AGG | + | chr5_4:24424250-24424269 | Msa0845360:CDS | 45.0% | |
| AGCCTGGTAGATCTTCTAAC+AGG | - | chr5_4:24424255-24424274 | None:intergenic | 45.0% | |
| !!! | AATTTATTTAAAATCAATTT+TGG | - | chr5_4:24422690-24422709 | None:intergenic | 5.0% |
| !!! | TTAAATTTTATAATTAGTTT+TGG | + | chr5_4:24422955-24422974 | Msa0845360:intron | 5.0% |
| CTGTGTTATCGTGGTTTCGG+AGG | - | chr5_4:24420968-24420987 | None:intergenic | 50.0% | |
| CTCCGAAACCACGATAACAC+AGG | + | chr5_4:24420966-24420985 | Msa0845360:five_prime_UTR | 50.0% | |
| ! | CAACCCATTTGAGTTTGGCC+CGG | + | chr5_4:24421259-24421278 | Msa0845360:intron | 50.0% |
| CTACCGGGCCAAACTCAAAT+GGG | - | chr5_4:24421265-24421284 | None:intergenic | 50.0% | |
| ACTACCGGGCCAAACTCAAA+TGG | - | chr5_4:24421266-24421285 | None:intergenic | 50.0% | |
| AGGTCCCAAGCTAACACTAC+CGG | - | chr5_4:24421281-24421300 | None:intergenic | 50.0% | |
| ! | GTAGTGTTAGCTTGGGACCT+TGG | + | chr5_4:24421281-24421300 | Msa0845360:intron | 50.0% |
| CACATACCGACGAATCTGAG+GGG | - | chr5_4:24421379-24421398 | None:intergenic | 50.0% | |
| CCACATACCGACGAATCTGA+GGG | - | chr5_4:24421380-24421399 | None:intergenic | 50.0% | |
| CCTCAGATTCGTCGGTATGT+GGG | + | chr5_4:24421378-24421397 | Msa0845360:intron | 50.0% | |
| ! | CCTTCTACCTTCCCTTTTGG+AGG | - | chr5_4:24421996-24422015 | None:intergenic | 50.0% |
| CCTCCAAAAGGGAAGGTAGA+AGG | + | chr5_4:24421993-24422012 | Msa0845360:five_prime_UTR | 50.0% | |
| TGGCTTCCAAGACCCCAATA+CGG | + | chr5_4:24422099-24422118 | Msa0845360:CDS | 50.0% | |
| GATTGAGTTAGAGAGGGGTG+TGG | - | chr5_4:24422132-24422151 | None:intergenic | 50.0% | |
| !! | TGCAAGGGTTTAGCTCTTGC+TGG | + | chr5_4:24422302-24422321 | Msa0845360:CDS | 50.0% |
| GGCATCACTGTAATCTTCCG+CGG | + | chr5_4:24422493-24422512 | Msa0845360:CDS | 50.0% | |
| ! | GTGAGGCGTTAATCAAACCG+CGG | - | chr5_4:24422513-24422532 | None:intergenic | 50.0% |
| GCCTCACGTACGTCTCAAAA+TGG | + | chr5_4:24422526-24422545 | Msa0845360:CDS | 50.0% | |
| GAGCCTAGATAAGGGTCAAG+AGG | - | chr5_4:24422591-24422610 | None:intergenic | 50.0% | |
| TTGACCCTTATCTAGGCTCG+TGG | + | chr5_4:24422592-24422611 | Msa0845360:intron | 50.0% | |
| TGTTCATGGGTCATCCACAG+TGG | + | chr5_4:24423119-24423138 | Msa0845360:intron | 50.0% | |
| GTTCATGGGTCATCCACAGT+GGG | + | chr5_4:24423120-24423139 | Msa0845360:intron | 50.0% | |
| ! | GGTTCAAGTTCAACCCACTG+TGG | - | chr5_4:24423136-24423155 | None:intergenic | 50.0% |
| ! | GTCTGGCAATTTTGCCTGAC+AGG | + | chr5_4:24423319-24423338 | Msa0845360:intron | 50.0% |
| ACAGGTATGTCGCCGTTTCT+CGG | + | chr5_4:24423489-24423508 | Msa0845360:intron | 50.0% | |
| GAGACTTCACAGGAAGCTGA+AGG | + | chr5_4:24423634-24423653 | Msa0845360:CDS | 50.0% | |
| ACCAGCTGATGAAACTTCGC+AGG | + | chr5_4:24423768-24423787 | Msa0845360:CDS | 50.0% | |
| TCCTGCGAAGTTTCATCAGC+TGG | - | chr5_4:24423772-24423791 | None:intergenic | 50.0% | |
| CCGGAAGATATGGAATCGGA+AGG | + | chr5_4:24423844-24423863 | Msa0845360:CDS | 50.0% | |
| TTGGCCCGGTAGTGTTAGCT+TGG | + | chr5_4:24421273-24421292 | Msa0845360:intron | 55.0% | |
| ! | TGGCCCGGTAGTGTTAGCTT+GGG | + | chr5_4:24421274-24421293 | Msa0845360:intron | 55.0% |
| GGTCCCAAGCTAACACTACC+GGG | - | chr5_4:24421280-24421299 | None:intergenic | 55.0% | |
| CCCTCAGATTCGTCGGTATG+TGG | + | chr5_4:24421377-24421396 | Msa0845360:intron | 55.0% | |
| CCCACATACCGACGAATCTG+AGG | - | chr5_4:24421381-24421400 | None:intergenic | 55.0% | |
| AGATTCGTCGGTATGTGGGC+CGG | + | chr5_4:24421382-24421401 | Msa0845360:intron | 55.0% | |
| !! | TGTGGTGGTGGACCGTATTG+GGG | - | chr5_4:24422114-24422133 | None:intergenic | 55.0% |
| !! | GTGTGGTGGTGGACCGTATT+GGG | - | chr5_4:24422115-24422134 | None:intergenic | 55.0% |
| ! | TGAGTTAGAGAGGGGTGTGG+TGG | - | chr5_4:24422129-24422148 | None:intergenic | 55.0% |
| GTATGTCGCCGTTTCTCGGT+TGG | + | chr5_4:24423493-24423512 | Msa0845360:CDS | 55.0% | |
| ! | CTTGAGAGGAGCACGCTCCA+AGG | - | chr5_4:24421301-24421320 | None:intergenic | 60.0% |
| CTTGGAGCGTGCTCCTCTCA+AGG | + | chr5_4:24421299-24421318 | Msa0845360:intron | 60.0% | |
| CGTGCTCCTCTCAAGGTCTC+AGG | + | chr5_4:24421306-24421325 | Msa0845360:intron | 60.0% | |
| GGTGGACCGTATTGGGGTCT+TGG | - | chr5_4:24422108-24422127 | None:intergenic | 60.0% | |
| !! | GGTGTGGTGGTGGACCGTAT+TGG | - | chr5_4:24422116-24422135 | None:intergenic | 60.0% |
| ! | GTTAGAGAGGGGTGTGGTGG+TGG | - | chr5_4:24422126-24422145 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 24420898 | 24424293 | 24420898 | ID=Msa0845360;Name=Msa0845360 |
| chr5_4 | mRNA | 24420898 | 24424293 | 24420898 | ID=Msa0845360-mRNA-1;Parent=Msa0845360;Name=Msa0845360-mRNA-1;_AED=0.16;_eAED=0.17;_QI=207|1|0.8|1|0.75|0.8|5|0|362 |
| chr5_4 | exon | 24420898 | 24420987 | 24420898 | ID=Msa0845360-mRNA-1:exon:9820;Parent=Msa0845360-mRNA-1 |
| chr5_4 | exon | 24421981 | 24422166 | 24421981 | ID=Msa0845360-mRNA-1:exon:9821;Parent=Msa0845360-mRNA-1 |
| chr5_4 | exon | 24422260 | 24422339 | 24422260 | ID=Msa0845360-mRNA-1:exon:9822;Parent=Msa0845360-mRNA-1 |
| chr5_4 | exon | 24422423 | 24422561 | 24422423 | ID=Msa0845360-mRNA-1:exon:9823;Parent=Msa0845360-mRNA-1 |
| chr5_4 | exon | 24423493 | 24424293 | 24423493 | ID=Msa0845360-mRNA-1:exon:9824;Parent=Msa0845360-mRNA-1 |
| chr5_4 | five_prime_UTR | 24420898 | 24420987 | 24420898 | ID=Msa0845360-mRNA-1:five_prime_utr;Parent=Msa0845360-mRNA-1 |
| chr5_4 | five_prime_UTR | 24421981 | 24422097 | 24421981 | ID=Msa0845360-mRNA-1:five_prime_utr;Parent=Msa0845360-mRNA-1 |
| chr5_4 | CDS | 24422098 | 24422166 | 24422098 | ID=Msa0845360-mRNA-1:cds;Parent=Msa0845360-mRNA-1 |
| chr5_4 | CDS | 24422260 | 24422339 | 24422260 | ID=Msa0845360-mRNA-1:cds;Parent=Msa0845360-mRNA-1 |
| chr5_4 | CDS | 24422423 | 24422561 | 24422423 | ID=Msa0845360-mRNA-1:cds;Parent=Msa0845360-mRNA-1 |
| chr5_4 | CDS | 24423493 | 24424293 | 24423493 | ID=Msa0845360-mRNA-1:cds;Parent=Msa0845360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
