Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845610 | XP_003613773.1 | 97.451 | 667 | 16 | 1 | 1 | 667 | 1 | 666 | 0.0 | 1352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845610 | sp|Q9FMS5|MS1_ARATH | 51.542 | 681 | 289 | 16 | 7 | 667 | 13 | 672 | 0.0 | 668 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845610 | G7KF85 | 97.451 | 667 | 16 | 1 | 1 | 667 | 1 | 666 | 0.0 | 1352 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0845610 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845610 | MtrunA17_Chr5g0417171 | 98.253 | 458 | 7 | 1 | 210 | 667 | 1 | 457 | 0.0 | 932 |
| Msa0845610 | MtrunA17_Chr5g0434341 | 32.682 | 716 | 373 | 18 | 6 | 656 | 30 | 701 | 2.06e-121 | 378 |
| Msa0845610 | MtrunA17_Chr4g0017901 | 32.103 | 623 | 347 | 19 | 76 | 660 | 85 | 669 | 9.10e-90 | 294 |
| Msa0845610 | MtrunA17_Chr1g0188421 | 32.418 | 546 | 323 | 15 | 128 | 657 | 11 | 526 | 3.80e-77 | 257 |
| Msa0845610 | MtrunA17_Chr5g0417191 | 94.000 | 100 | 6 | 0 | 1 | 100 | 1 | 100 | 2.50e-62 | 202 |
| Msa0845610 | MtrunA17_Chr5g0417181 | 95.238 | 63 | 3 | 0 | 137 | 199 | 1 | 63 | 2.09e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845610 | AT5G22260.1 | 51.542 | 681 | 289 | 16 | 7 | 667 | 13 | 672 | 0.0 | 668 |
| Msa0845610 | AT1G66170.1 | 32.615 | 696 | 378 | 20 | 10 | 661 | 10 | 658 | 1.88e-110 | 349 |
| Msa0845610 | AT1G33420.1 | 31.688 | 628 | 332 | 20 | 76 | 667 | 92 | 658 | 1.64e-85 | 283 |
| Msa0845610 | AT2G01810.1 | 28.731 | 717 | 393 | 25 | 12 | 656 | 12 | 682 | 1.42e-83 | 278 |
| Msa0845610 | AT1G33420.2 | 31.570 | 605 | 318 | 19 | 98 | 667 | 10 | 553 | 9.67e-82 | 270 |
| Msa0845610 | AT2G07714.1 | 42.400 | 125 | 65 | 2 | 184 | 303 | 1 | 123 | 2.64e-25 | 104 |
| Msa0845610 | ATMG00550.1 | 40.404 | 99 | 52 | 2 | 210 | 303 | 1 | 97 | 4.82e-15 | 73.6 |
Find 136 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCTTCTTATTGCTTCTA+TGG | 0.182195 | 5_4:+24877462 | None:intergenic |
| CACTCCACAATTCCCTTCTT+TGG | 0.188498 | 5_4:+24876389 | None:intergenic |
| AGAAATTCTGACCCTATAAT+TGG | 0.198934 | 5_4:+24876854 | None:intergenic |
| TTTACTTGAATATGCAAATT+TGG | 0.218927 | 5_4:-24879843 | Msa0845610:CDS |
| TCAAATAATACTCATGATTA+TGG | 0.227620 | 5_4:+24876681 | None:intergenic |
| GATTTGGTTACCACCCAAAT+TGG | 0.238511 | 5_4:+24878284 | None:intergenic |
| TGGTACCTTTGGAAGATTAA+TGG | 0.241935 | 5_4:+24877391 | None:intergenic |
| GTATTTCACTCTAATGGATT+TGG | 0.252558 | 5_4:-24878342 | Msa0845610:CDS |
| GGGTACCCAGTCTTGTTTAA+TGG | 0.271670 | 5_4:-24879893 | Msa0845610:CDS |
| CATGGTGTATTTCACTCTAA+TGG | 0.275387 | 5_4:-24878348 | Msa0845610:CDS |
| ATTGACACGAAACCAATTAT+AGG | 0.276279 | 5_4:-24876866 | Msa0845610:CDS |
| ATTGGAAACTGGTTCCAATT+TGG | 0.281618 | 5_4:-24878298 | Msa0845610:CDS |
| CTCTAATTCTATTAATTTGT+TGG | 0.294459 | 5_4:+24878383 | None:intergenic |
| GTGTCTCCTTTGAAGGTAAC+AGG | 0.294497 | 5_4:+24878472 | None:intergenic |
| TGAGCCATGGTTTGGTCGTT+GGG | 0.296656 | 5_4:-24877539 | Msa0845610:CDS |
| TTGGAAACTGGTTCCAATTT+GGG | 0.304170 | 5_4:-24878297 | Msa0845610:CDS |
| CAGAAAGTGTTTGGTACCTT+TGG | 0.317798 | 5_4:+24877380 | None:intergenic |
| GTAACCAAATCATGGAGTTT+TGG | 0.318449 | 5_4:-24878272 | Msa0845610:CDS |
| TGAGGAACTTCTTCATCATT+TGG | 0.319257 | 5_4:+24876278 | None:intergenic |
| GATTCCAAAACTCCATGATT+TGG | 0.323998 | 5_4:+24878268 | None:intergenic |
| AAATTTGGTCGAGGATGTTT+TGG | 0.327870 | 5_4:-24877511 | Msa0845610:CDS |
| TATTTCACTCTAATGGATTT+GGG | 0.327887 | 5_4:-24878341 | Msa0845610:CDS |
| GGTACCTTTGGAAGATTAAT+GGG | 0.334887 | 5_4:+24877392 | None:intergenic |
| CTTGTGATATTTGTGAAATT+TGG | 0.339612 | 5_4:-24876325 | Msa0845610:CDS |
| ATTGTCGTTGGTCCCCTAAA+AGG | 0.346975 | 5_4:-24877243 | Msa0845610:CDS |
| TACTCATAACCAACCCTTCA+TGG | 0.346998 | 5_4:+24876981 | None:intergenic |
| GTTCCTTTGCAAGTTGAGTT+AGG | 0.365195 | 5_4:-24876764 | Msa0845610:CDS |
| TTGGAGAGTAATTTGAAAAC+GGG | 0.367226 | 5_4:-24879824 | Msa0845610:CDS |
| GGTCGTTGGGGATACAAATT+TGG | 0.369438 | 5_4:-24877526 | Msa0845610:CDS |
| CTACTTAGTGTCTCCTTTGA+AGG | 0.370472 | 5_4:+24878465 | None:intergenic |
| AAATATCTTATCAAAGACTA+TGG | 0.371766 | 5_4:-24876791 | Msa0845610:CDS |
| CAACAAATTAATAGAATTAG+AGG | 0.376914 | 5_4:-24878382 | Msa0845610:CDS |
| TTGACACGAAACCAATTATA+GGG | 0.381316 | 5_4:-24876865 | Msa0845610:CDS |
| GGGAATTTGATGAATGCAAA+AGG | 0.384193 | 5_4:-24876521 | Msa0845610:CDS |
| GCATTCATCAAATTCCCATT+TGG | 0.391057 | 5_4:+24876527 | None:intergenic |
| TTAAGGAATGTTAACAATGT+AGG | 0.391672 | 5_4:-24876704 | Msa0845610:CDS |
| AGGTTGGCATGGTGGTGAAA+TGG | 0.392045 | 5_4:-24876447 | Msa0845610:CDS |
| GGTTGGCATGGTGGTGAAAT+GGG | 0.394662 | 5_4:-24876446 | Msa0845610:CDS |
| TATCGGAGACACTGGTTTGT+TGG | 0.403895 | 5_4:-24877125 | Msa0845610:CDS |
| TAGTAGTAGTAATAAAGTTA+AGG | 0.409211 | 5_4:-24876954 | Msa0845610:CDS |
| TTTGGAGAGTAATTTGAAAA+CGG | 0.416809 | 5_4:-24879825 | Msa0845610:CDS |
| ACGACAATTTGTTTCGACTA+AGG | 0.424799 | 5_4:+24877258 | None:intergenic |
| TCATTTCCTGTTACCTTCAA+AGG | 0.433626 | 5_4:-24878478 | Msa0845610:CDS |
| TCATATAGTTATGGCAAAGA+AGG | 0.438373 | 5_4:+24876212 | None:intergenic |
| TTCAATGTGATACATTCATA+AGG | 0.439527 | 5_4:+24876638 | None:intergenic |
| CCACGTCGTTGGAAACTACT+TGG | 0.439905 | 5_4:-24877077 | Msa0845610:CDS |
| GACTAAGGCGCTAGTGTTGA+AGG | 0.441803 | 5_4:+24877273 | None:intergenic |
| ACTTCTTATTGCAAATGAAA+TGG | 0.444039 | 5_4:+24878502 | None:intergenic |
| ACAAGAGAAGGAAGAGATGT+GGG | 0.448883 | 5_4:-24879949 | Msa0845610:CDS |
| GTGAGCCATGGTTTGGTCGT+TGG | 0.449098 | 5_4:-24877540 | Msa0845610:CDS |
| TGGTGAAATGGGAATCAATA+TGG | 0.450711 | 5_4:-24876435 | Msa0845610:CDS |
| CAGCTATACCATTGGCAGCT+AGG | 0.451926 | 5_4:-24876829 | Msa0845610:CDS |
| TGTGTCAATGGATTGGAAAC+TGG | 0.453070 | 5_4:-24878309 | Msa0845610:CDS |
| GGAACCAATGCATGTTTCGC+GGG | 0.463983 | 5_4:+24877294 | None:intergenic |
| GATGCTCCATTAAACAAGAC+TGG | 0.465021 | 5_4:+24879887 | None:intergenic |
| GAGAGTGATCAGAAAGTGTT+TGG | 0.465582 | 5_4:+24877371 | None:intergenic |
| GGAATTGTGGAGTGCATTTG+TGG | 0.466448 | 5_4:-24876380 | Msa0845610:CDS |
| GATCACTCTCTTGTCACCCT+TGG | 0.474687 | 5_4:-24877358 | Msa0845610:CDS |
| AATGTTTACCCTTGCCATGA+AGG | 0.474845 | 5_4:-24876995 | Msa0845610:CDS |
| GGGCATTTGCTATGTGTCAA+TGG | 0.487364 | 5_4:-24878321 | Msa0845610:CDS |
| GCATACAGTGAGCCATGGTT+TGG | 0.489223 | 5_4:-24877547 | Msa0845610:CDS |
| GTCCCCTAAAAGGATTGAAA+TGG | 0.489300 | 5_4:-24877233 | Msa0845610:CDS |
| ATGTTGAATGTTGATGTAGT+TGG | 0.490006 | 5_4:-24879974 | Msa0845610:CDS |
| GGTTCGTCGAAGCTTGAATC+CGG | 0.492847 | 5_4:-24877056 | Msa0845610:CDS |
| ATACATTCATAAGGTGGCAT+TGG | 0.496564 | 5_4:+24876647 | None:intergenic |
| TGTTGAATGTTGATGTAGTT+GGG | 0.502680 | 5_4:-24879973 | Msa0845610:CDS |
| GGAATTTGATGAATGCAAAA+GGG | 0.503842 | 5_4:-24876520 | Msa0845610:CDS |
| ATGTGAAAGGGATCCAAAGA+AGG | 0.504134 | 5_4:-24876402 | Msa0845610:CDS |
| AACAAGAGAAGGAAGAGATG+TGG | 0.510516 | 5_4:-24879950 | Msa0845610:CDS |
| ATGTAGTTGGGAACAAGAGA+AGG | 0.512730 | 5_4:-24879961 | Msa0845610:CDS |
| TTTGCTATGTGTCAATGGAT+TGG | 0.518315 | 5_4:-24878316 | Msa0845610:CDS |
| GATCCTAACTCAACTTGCAA+AGG | 0.523589 | 5_4:+24876761 | None:intergenic |
| TGCAACCATTGTCAATATGT+TGG | 0.523953 | 5_4:-24879698 | Msa0845610:intron |
| GAATGCAAAAGGGAATGAAA+TGG | 0.526326 | 5_4:-24876510 | Msa0845610:CDS |
| AGGACAAGTACAAGATTACA+AGG | 0.526429 | 5_4:-24876934 | Msa0845610:CDS |
| ATGTTTACCCTTGCCATGAA+GGG | 0.535284 | 5_4:-24876994 | Msa0845610:CDS |
| GAAAACTTGTACTTGAAGGT+TGG | 0.535716 | 5_4:-24876463 | Msa0845610:CDS |
| GGTTGAGCAAATATGTGAAA+GGG | 0.538616 | 5_4:-24876414 | Msa0845610:CDS |
| TTTGGGTGGTAACCAAATCA+TGG | 0.542124 | 5_4:-24878280 | Msa0845610:CDS |
| ATTTCTTTCAGCTATACCAT+TGG | 0.544168 | 5_4:-24876837 | Msa0845610:CDS |
| GACAAGTACAAGATTACAAG+GGG | 0.544839 | 5_4:-24876932 | Msa0845610:CDS |
| AGGAACCAATGCATGTTTCG+CGG | 0.550509 | 5_4:+24877293 | None:intergenic |
| TTTGGGATGATTGAAGTGGG+TGG | 0.553049 | 5_4:-24876485 | Msa0845610:CDS |
| AGAAGATGATGGTGAGAGAA+TGG | 0.554875 | 5_4:-24876351 | Msa0845610:CDS |
| GAGAAGGAAGAGATGTGGGA+GGG | 0.555048 | 5_4:-24879945 | Msa0845610:CDS |
| TGGTTGAGCAAATATGTGAA+AGG | 0.555851 | 5_4:-24876415 | Msa0845610:CDS |
| AGAGAAGGAAGAGATGTGGG+AGG | 0.555899 | 5_4:-24879946 | Msa0845610:CDS |
| CATTACCAACATATTGACAA+TGG | 0.558664 | 5_4:+24879693 | None:intergenic |
| TGTGCAATGGATTACAAGCA+AGG | 0.560357 | 5_4:-24878242 | Msa0845610:intron |
| CATATAGTTATGGCAAAGAA+GGG | 0.561696 | 5_4:+24876213 | None:intergenic |
| TCACTAGGTAACCACGTCGT+TGG | 0.562205 | 5_4:-24877088 | Msa0845610:CDS |
| TGGGGATACAAATTTGGTCG+AGG | 0.568057 | 5_4:-24877520 | Msa0845610:CDS |
| GGTGGAAAACTTGTACTTGA+AGG | 0.570004 | 5_4:-24876467 | Msa0845610:CDS |
| CTTCCCCGCGAAACATGCAT+TGG | 0.570615 | 5_4:-24877298 | Msa0845610:CDS |
| GGATCCAAAGAAGGGAATTG+TGG | 0.571681 | 5_4:-24876393 | Msa0845610:CDS |
| ACTTAAAGCTAGAAGTTGAA+AGG | 0.578921 | 5_4:-24876595 | Msa0845610:CDS |
| TTACCCTTGCCATGAAGGGT+TGG | 0.581244 | 5_4:-24876990 | Msa0845610:CDS |
| ATAACCAACCCTTCATGGCA+AGG | 0.588536 | 5_4:+24876986 | None:intergenic |
| GAATCCGGTTACAAAAGTGT+TGG | 0.591697 | 5_4:-24877041 | Msa0845610:CDS |
| AATGTGATACATTCATAAGG+TGG | 0.594621 | 5_4:+24876641 | None:intergenic |
| TGTGATTGAAGAATCAATTG+AGG | 0.596825 | 5_4:-24879738 | Msa0845610:CDS |
| GGCAACACGGGTCATTGTTG+AGG | 0.600772 | 5_4:-24877212 | Msa0845610:CDS |
| AAGGATTGAAATGGCAACAC+GGG | 0.601348 | 5_4:-24877224 | Msa0845610:CDS |
| GAAACTGGTTCCAATTTGGG+TGG | 0.601742 | 5_4:-24878294 | Msa0845610:CDS |
| TGTGAAAGGGATCCAAAGAA+GGG | 0.602822 | 5_4:-24876401 | Msa0845610:CDS |
| GAAAGCTGCTGTGATTCAAA+TGG | 0.605077 | 5_4:-24878429 | Msa0845610:CDS |
| TAGTCGAAACAAATTGTCGT+TGG | 0.609743 | 5_4:-24877255 | Msa0845610:CDS |
| ATGGAACTAAGACTTGTGAA+TGG | 0.611915 | 5_4:-24877574 | Msa0845610:CDS |
| TGAAAACGGGAATGCCTATG+TGG | 0.614844 | 5_4:-24879811 | Msa0845610:CDS |
| GAGCCATGGTTTGGTCGTTG+GGG | 0.614975 | 5_4:-24877538 | Msa0845610:CDS |
| AGAATTATCCTAGCTGCCAA+TGG | 0.615757 | 5_4:+24876821 | None:intergenic |
| TAACCAACCCTTCATGGCAA+GGG | 0.616092 | 5_4:+24876987 | None:intergenic |
| ATGCTCCATTAAACAAGACT+GGG | 0.616469 | 5_4:+24879888 | None:intergenic |
| CTTGTACTTGAAGGTTGGCA+TGG | 0.619314 | 5_4:-24876458 | Msa0845610:CDS |
| AAATCCCATTAATCTTCCAA+AGG | 0.619758 | 5_4:-24877396 | Msa0845610:CDS |
| TGATGTGTGAGTAAGTATAG+TGG | 0.621011 | 5_4:+24877439 | None:intergenic |
| AATGGTACAATAAATACTAG+TGG | 0.628312 | 5_4:-24878411 | Msa0845610:CDS |
| TTAGAGGGACATATGATGCA+TGG | 0.628993 | 5_4:-24878366 | Msa0845610:CDS |
| AAAGGATTGAAATGGCAACA+CGG | 0.634016 | 5_4:-24877225 | Msa0845610:CDS |
| TGTGGAACTAAAGAAGATGA+TGG | 0.634151 | 5_4:-24876362 | Msa0845610:CDS |
| TCAAGTTGAAATGACCACAT+AGG | 0.634446 | 5_4:+24879797 | None:intergenic |
| TGTAGTGAAATAAGTCACCA+AGG | 0.636000 | 5_4:+24877341 | None:intergenic |
| TCATGAGTATTATTTGAACA+AGG | 0.637154 | 5_4:-24876675 | Msa0845610:CDS |
| AACAAATTAATAGAATTAGA+GGG | 0.638228 | 5_4:-24878381 | Msa0845610:CDS |
| GAATAGCATACAGTGAGCCA+TGG | 0.638270 | 5_4:-24877552 | Msa0845610:CDS |
| GTCTCCGATAAAAGCACGTG+CGG | 0.641824 | 5_4:+24877138 | None:intergenic |
| ACAAACAACAAGATATACAA+AGG | 0.642821 | 5_4:+24879758 | None:intergenic |
| AACAACAAGATATACAAAGG+TGG | 0.651968 | 5_4:+24879761 | None:intergenic |
| CCAAGTAGTTTCCAACGACG+TGG | 0.664980 | 5_4:+24877077 | None:intergenic |
| GTAGTGAAATAAGTCACCAA+GGG | 0.670009 | 5_4:+24877342 | None:intergenic |
| GGACAAGTACAAGATTACAA+GGG | 0.673997 | 5_4:-24876933 | Msa0845610:CDS |
| GAACCAATGCATGTTTCGCG+GGG | 0.677226 | 5_4:+24877295 | None:intergenic |
| TATCCCCAACGACCAAACCA+TGG | 0.677929 | 5_4:+24877535 | None:intergenic |
| TCTTATCAAAGACTATGGAG+AGG | 0.706196 | 5_4:-24876786 | Msa0845610:CDS |
| GTACTTGAAGGTTGGCATGG+TGG | 0.707747 | 5_4:-24876455 | Msa0845610:CDS |
| ACAAGTACAAGATTACAAGG+GGG | 0.810721 | 5_4:-24876931 | Msa0845610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATATTCATTTGTATA+TGG | - | chr5_4:24876559-24876578 | Msa0845610:CDS | 10.0% |
| !! | ATATATTTGTGTAAGAAAAT+AGG | - | chr5_4:24876765-24876784 | Msa0845610:CDS | 15.0% |
| !! | TATATTTGTGTAAGAAAATA+GGG | - | chr5_4:24876766-24876785 | Msa0845610:CDS | 15.0% |
| !! | AAATAAATCCAAGAATAAAA+TGG | - | chr5_4:24877170-24877189 | Msa0845610:CDS | 15.0% |
| !! | AACAAATTAATAGAATTAGA+GGG | - | chr5_4:24877813-24877832 | Msa0845610:intron | 15.0% |
| !!! | ATGTAGCTTTTAAAAAATAA+CGG | + | chr5_4:24878182-24878201 | None:intergenic | 15.0% |
| !! | AGAAATGTTTACTTTAAATA+CGG | + | chr5_4:24878276-24878295 | None:intergenic | 15.0% |
| !!! | TTTATTGTACAATTTTGTTA+AGG | - | chr5_4:24879473-24879492 | Msa0845610:intron | 15.0% |
| !!! | TTTTTAGGTTCAAGAATTTT+GGG | - | chr5_4:24876272-24876291 | Msa0845610:CDS | 20.0% |
| !! | TTTACTTGAATATGCAAATT+TGG | - | chr5_4:24876351-24876370 | Msa0845610:CDS | 20.0% |
| !! | ATATTTGTGTAAGAAAATAG+GGG | - | chr5_4:24876767-24876786 | Msa0845610:CDS | 20.0% |
| !!! | TTTTAAAAATAAAGATGCCT+AGG | - | chr5_4:24876844-24876863 | Msa0845610:CDS | 20.0% |
| !! | GATTTATTTATGTGTAAATC+AGG | + | chr5_4:24877159-24877178 | None:intergenic | 20.0% |
| !!! | TATTTGTACCATTTTATTCT+TGG | + | chr5_4:24877181-24877200 | None:intergenic | 20.0% |
| !! | CAAATCATATTTCACTATTT+AGG | + | chr5_4:24877479-24877498 | None:intergenic | 20.0% |
| !! | TTAATTACTTCAATTTCACT+TGG | - | chr5_4:24877652-24877671 | Msa0845610:intron | 20.0% |
| !! | TAATTACTTCAATTTCACTT+GGG | - | chr5_4:24877653-24877672 | Msa0845610:intron | 20.0% |
| !!! | CTCTAATTCTATTAATTTGT+TGG | + | chr5_4:24877814-24877833 | None:intergenic | 20.0% |
| !! | CAACAAATTAATAGAATTAG+AGG | - | chr5_4:24877812-24877831 | Msa0845610:intron | 20.0% |
| !!! | GTATTTAAAGTAAACATTTC+TGG | - | chr5_4:24878275-24878294 | Msa0845610:CDS | 20.0% |
| !! | TAGTAGTAGTAATAAAGTTA+AGG | - | chr5_4:24879240-24879259 | Msa0845610:intron | 20.0% |
| !! | AAATATCTTATCAAAGACTA+TGG | - | chr5_4:24879403-24879422 | Msa0845610:intron | 20.0% |
| !! | TCAAATAATACTCATGATTA+TGG | + | chr5_4:24879516-24879535 | None:intergenic | 20.0% |
| !!! | GTTTTTAGGTTCAAGAATTT+TGG | - | chr5_4:24876271-24876290 | Msa0845610:CDS | 25.0% |
| !!! | TTTTAGGTTCAAGAATTTTG+GGG | - | chr5_4:24876273-24876292 | Msa0845610:CDS | 25.0% |
| ! | TTTGGAGAGTAATTTGAAAA+CGG | - | chr5_4:24876369-24876388 | Msa0845610:CDS | 25.0% |
| ! | ACAAACAACAAGATATACAA+AGG | + | chr5_4:24876439-24876458 | None:intergenic | 25.0% |
| ! | TTGAAAACAATGAACCTAAT+TGG | - | chr5_4:24876582-24876601 | Msa0845610:CDS | 25.0% |
| ! | AATCATATGACTTACCAATT+AGG | + | chr5_4:24876599-24876618 | None:intergenic | 25.0% |
| ! | TATTTGTGTAAGAAAATAGG+GGG | - | chr5_4:24876768-24876787 | Msa0845610:CDS | 25.0% |
| !!! | TTCTACGACTACATTTTTTT+TGG | - | chr5_4:24876999-24877018 | Msa0845610:CDS | 25.0% |
| !!! | CCAAGTATTTTTAAATTTCC+GGG | + | chr5_4:24877285-24877304 | None:intergenic | 25.0% |
| !!! | CCCAAGTATTTTTAAATTTC+CGG | + | chr5_4:24877286-24877305 | None:intergenic | 25.0% |
| ! | CCGGAAATTTAAAAATACTT+GGG | - | chr5_4:24877283-24877302 | Msa0845610:CDS | 25.0% |
| ! | AGTAAAATTCCCTAATATAC+AGG | - | chr5_4:24877306-24877325 | Msa0845610:CDS | 25.0% |
| ! | GTAAAATTCCCTAATATACA+GGG | - | chr5_4:24877307-24877326 | Msa0845610:CDS | 25.0% |
| ! | TAAAATTCCCTAATATACAG+GGG | - | chr5_4:24877308-24877327 | Msa0845610:CDS | 25.0% |
| ! | AAATTGACTAGATTTATTCC+TGG | + | chr5_4:24877443-24877462 | None:intergenic | 25.0% |
| ! | AATTACTTCAATTTCACTTG+GGG | - | chr5_4:24877654-24877673 | Msa0845610:intron | 25.0% |
| ! | ACTTCTTATTGCAAATGAAA+TGG | + | chr5_4:24877695-24877714 | None:intergenic | 25.0% |
| ! | AATGGTACAATAAATACTAG+TGG | - | chr5_4:24877783-24877802 | Msa0845610:intron | 25.0% |
| !!! | TATTTCACTCTAATGGATTT+GGG | - | chr5_4:24877853-24877872 | Msa0845610:intron | 25.0% |
| !!! | GTCTATATTTGCTATGATAA+TGG | - | chr5_4:24878132-24878151 | Msa0845610:intron | 25.0% |
| !! | TAATGGATATGTCAAAATCA+TGG | - | chr5_4:24878149-24878168 | Msa0845610:intron | 25.0% |
| !! | ATTTTACACTAAAATCACAG+TGG | - | chr5_4:24878207-24878226 | Msa0845610:intron | 25.0% |
| !!! | TTAAAGTAAACATTTCTGGT+TGG | - | chr5_4:24878279-24878298 | Msa0845610:CDS | 25.0% |
| !!! | TAAAGTAAACATTTCTGGTT+GGG | - | chr5_4:24878280-24878299 | Msa0845610:CDS | 25.0% |
| !!! | ATTTTTTATATCCCCAAGAA+TGG | - | chr5_4:24878390-24878409 | Msa0845610:CDS | 25.0% |
| ! | CAAAATGTTTCACAATTTCT+TGG | + | chr5_4:24878457-24878476 | None:intergenic | 25.0% |
| !! | CAAGAAATTGTGAAACATTT+TGG | - | chr5_4:24878455-24878474 | Msa0845610:CDS | 25.0% |
| !! | TGACTAATTTGTATCAAACA+TGG | - | chr5_4:24878557-24878576 | Msa0845610:intron | 25.0% |
| !! | TAATTTGTATCAAACATGGT+AGG | - | chr5_4:24878561-24878580 | Msa0845610:intron | 25.0% |
| !! | TCTGAATTCAGTTCTTTTTA+AGG | + | chr5_4:24879008-24879027 | None:intergenic | 25.0% |
| ! | TAAAAAGAACTGAATTCAGA+TGG | - | chr5_4:24879008-24879027 | Msa0845610:intron | 25.0% |
| ! | TTAAGGAATGTTAACAATGT+AGG | - | chr5_4:24879490-24879509 | Msa0845610:intron | 25.0% |
| ! | TCATGAGTATTATTTGAACA+AGG | - | chr5_4:24879519-24879538 | Msa0845610:intron | 25.0% |
| ! | TTCAATGTGATACATTCATA+AGG | + | chr5_4:24879559-24879578 | None:intergenic | 25.0% |
| !! | TAGAAGTTGAAAGGAATTTT+AGG | - | chr5_4:24879608-24879627 | Msa0845610:intron | 25.0% |
| !! | AGAAGTTGAAAGGAATTTTA+GGG | - | chr5_4:24879609-24879628 | Msa0845610:intron | 25.0% |
| !!! | GAATTTTAGGGAAATCTATT+GGG | - | chr5_4:24879621-24879640 | Msa0845610:intron | 25.0% |
| !!! | AATTTTAGGGAAATCTATTG+GGG | - | chr5_4:24879622-24879641 | Msa0845610:intron | 25.0% |
| ! | CTTGTGATATTTGTGAAATT+TGG | - | chr5_4:24879869-24879888 | Msa0845610:CDS | 25.0% |
| !! | CTTTTGCATAGAAAAATATG+AGG | + | chr5_4:24879937-24879956 | None:intergenic | 25.0% |
| !! | CTCATATTTTTCTATGCAAA+AGG | - | chr5_4:24879935-24879954 | Msa0845610:CDS | 25.0% |
| ATGTTGAATGTTGATGTAGT+TGG | - | chr5_4:24876220-24876239 | Msa0845610:CDS | 30.0% | |
| TGTTGAATGTTGATGTAGTT+GGG | - | chr5_4:24876221-24876240 | Msa0845610:CDS | 30.0% | |
| TTGGAGAGTAATTTGAAAAC+GGG | - | chr5_4:24876370-24876389 | Msa0845610:CDS | 30.0% | |
| AACAACAAGATATACAAAGG+TGG | + | chr5_4:24876436-24876455 | None:intergenic | 30.0% | |
| TGTGATTGAAGAATCAATTG+AGG | - | chr5_4:24876456-24876475 | Msa0845610:CDS | 30.0% | |
| CATTACCAACATATTGACAA+TGG | + | chr5_4:24876504-24876523 | None:intergenic | 30.0% | |
| TCTGTAATATACTTTCACCT+AGG | + | chr5_4:24876864-24876883 | None:intergenic | 30.0% | |
| !! | GACTATTTCTTCAAGTTTTG+TGG | + | chr5_4:24877114-24877133 | None:intergenic | 30.0% |
| ATAGTCACTATAATTGCACA+CGG | - | chr5_4:24877128-24877147 | Msa0845610:CDS | 30.0% | |
| CAACATCCCTATTATAGTAA+TGG | - | chr5_4:24877257-24877276 | Msa0845610:CDS | 30.0% | |
| CCCGGAAATTTAAAAATACT+TGG | - | chr5_4:24877282-24877301 | Msa0845610:CDS | 30.0% | |
| !! | TAAGTGAGATGTTTAGGTTT+TGG | + | chr5_4:24877341-24877360 | None:intergenic | 30.0% |
| TGTGAATAAGTGAGATGTTT+AGG | + | chr5_4:24877347-24877366 | None:intergenic | 30.0% | |
| ACAACTTTGCTTGAAATACA+AGG | + | chr5_4:24877418-24877437 | None:intergenic | 30.0% | |
| !! | TCTAATACATGTTACTTTGC+TGG | - | chr5_4:24877607-24877626 | Msa0845610:CDS | 30.0% |
| !! | GTATTTCACTCTAATGGATT+TGG | - | chr5_4:24877852-24877871 | Msa0845610:intron | 30.0% |
| ! | TCTTTGTTGCATTCTTTTCA+TGG | - | chr5_4:24878050-24878069 | Msa0845610:intron | 30.0% |
| CTTTAAATACGGTGTATGTT+TGG | + | chr5_4:24878265-24878284 | None:intergenic | 30.0% | |
| GTTAATTCTTCAGATGATCA+CGG | - | chr5_4:24878352-24878371 | Msa0845610:CDS | 30.0% | |
| GTGGTAAATATGTTAAGTCA+TGG | + | chr5_4:24878417-24878436 | None:intergenic | 30.0% | |
| GGCATATAGTAAAGTAAAAG+TGG | + | chr5_4:24878436-24878455 | None:intergenic | 30.0% | |
| !! | AAAAAGTGTCATGCAAAGAT+CGG | - | chr5_4:24878512-24878531 | Msa0845610:CDS | 30.0% |
| ! | TTATTGCTTCTATGGCTTTT+TGG | + | chr5_4:24878727-24878746 | None:intergenic | 30.0% |
| AAATCCCATTAATCTTCCAA+AGG | - | chr5_4:24878798-24878817 | Msa0845610:intron | 30.0% | |
| !! | TTGCCATTTCAATCCTTTTA+GGG | + | chr5_4:24878967-24878986 | None:intergenic | 30.0% |
| !!! | GATTTTGTTTTGAAGTCACT+AGG | - | chr5_4:24879091-24879110 | Msa0845610:intron | 30.0% |
| ATTGACACGAAACCAATTAT+AGG | - | chr5_4:24879328-24879347 | Msa0845610:intron | 30.0% | |
| TTGACACGAAACCAATTATA+GGG | - | chr5_4:24879329-24879348 | Msa0845610:intron | 30.0% | |
| AGAAATTCTGACCCTATAAT+TGG | + | chr5_4:24879343-24879362 | None:intergenic | 30.0% | |
| ATTTCTTTCAGCTATACCAT+TGG | - | chr5_4:24879357-24879376 | Msa0845610:intron | 30.0% | |
| AATGTGATACATTCATAAGG+TGG | + | chr5_4:24879556-24879575 | None:intergenic | 30.0% | |
| ACTTAAAGCTAGAAGTTGAA+AGG | - | chr5_4:24879599-24879618 | Msa0845610:intron | 30.0% | |
| !! | GGAATTTTAGGGAAATCTAT+TGG | - | chr5_4:24879620-24879639 | Msa0845610:intron | 30.0% |
| !! | ATTTTAGGGAAATCTATTGG+GGG | - | chr5_4:24879623-24879642 | Msa0845610:intron | 30.0% |
| GGAATTTGATGAATGCAAAA+GGG | - | chr5_4:24879674-24879693 | Msa0845610:intron | 30.0% | |
| ! | AAAGGGAATGAAATGGTTTT+TGG | - | chr5_4:24879691-24879710 | Msa0845610:intron | 30.0% |
| ! | AAGGGAATGAAATGGTTTTT+GGG | - | chr5_4:24879692-24879711 | Msa0845610:intron | 30.0% |
| !! | TTCAAGAATTTTGGGGAACA+AGG | - | chr5_4:24876280-24876299 | Msa0845610:CDS | 35.0% |
| !! | TCAAGAATTTTGGGGAACAA+GGG | - | chr5_4:24876281-24876300 | Msa0845610:CDS | 35.0% |
| ATGCTCCATTAAACAAGACT+GGG | + | chr5_4:24876309-24876328 | None:intergenic | 35.0% | |
| !! | TCAAGTTGAAATGACCACAT+AGG | + | chr5_4:24876400-24876419 | None:intergenic | 35.0% |
| TGCAACCATTGTCAATATGT+TGG | - | chr5_4:24876496-24876515 | Msa0845610:CDS | 35.0% | |
| AGCTTCAAACTTCATTTGCT+TGG | - | chr5_4:24876662-24876681 | Msa0845610:CDS | 35.0% | |
| CGGGAACCATTACTATAATA+GGG | + | chr5_4:24877266-24877285 | None:intergenic | 35.0% | |
| CCTATTATAGTAATGGTTCC+CGG | - | chr5_4:24877264-24877283 | Msa0845610:CDS | 35.0% | |
| ! | TTTCAAGCAAAGTTGTTTCC+AGG | - | chr5_4:24877422-24877441 | Msa0845610:CDS | 35.0% |
| TTCAATTTCACTTGGGGTTT+AGG | - | chr5_4:24877660-24877679 | Msa0845610:intron | 35.0% | |
| TCATTTCCTGTTACCTTCAA+AGG | - | chr5_4:24877716-24877735 | Msa0845610:intron | 35.0% | |
| CATGGTGTATTTCACTCTAA+TGG | - | chr5_4:24877846-24877865 | Msa0845610:intron | 35.0% | |
| ! | TTTGCTATGTGTCAATGGAT+TGG | - | chr5_4:24877878-24877897 | Msa0845610:intron | 35.0% |
| ! | ATTGGAAACTGGTTCCAATT+TGG | - | chr5_4:24877896-24877915 | Msa0845610:intron | 35.0% |
| ! | TTGGAAACTGGTTCCAATTT+GGG | - | chr5_4:24877897-24877916 | Msa0845610:intron | 35.0% |
| ! | GTAACCAAATCATGGAGTTT+TGG | - | chr5_4:24877922-24877941 | Msa0845610:intron | 35.0% |
| GATTCCAAAACTCCATGATT+TGG | + | chr5_4:24877929-24877948 | None:intergenic | 35.0% | |
| !!! | TTTTGGAATCGTTTGTGCAA+TGG | - | chr5_4:24877939-24877958 | Msa0845610:intron | 35.0% |
| TCATGGAAATGAGCTATCTA+TGG | - | chr5_4:24878067-24878086 | Msa0845610:intron | 35.0% | |
| CATGGAAATGAGCTATCTAT+GGG | - | chr5_4:24878068-24878087 | Msa0845610:intron | 35.0% | |
| TTAAGTCATGGACCATTCTT+GGG | + | chr5_4:24878405-24878424 | None:intergenic | 35.0% | |
| AATGACACGTCACAAAAAAG+AGG | - | chr5_4:24878596-24878615 | Msa0845610:intron | 35.0% | |
| ATGGAACTAAGACTTGTGAA+TGG | - | chr5_4:24878620-24878639 | Msa0845610:intron | 35.0% | |
| ! | AAATTTGGTCGAGGATGTTT+TGG | - | chr5_4:24878683-24878702 | Msa0845610:intron | 35.0% |
| CATGCTTCTTATTGCTTCTA+TGG | + | chr5_4:24878735-24878754 | None:intergenic | 35.0% | |
| TGATGTGTGAGTAAGTATAG+TGG | + | chr5_4:24878758-24878777 | None:intergenic | 35.0% | |
| ! | GGTACCTTTGGAAGATTAAT+GGG | + | chr5_4:24878805-24878824 | None:intergenic | 35.0% |
| ! | TGGTACCTTTGGAAGATTAA+TGG | + | chr5_4:24878806-24878825 | None:intergenic | 35.0% |
| GTAGTGAAATAAGTCACCAA+GGG | + | chr5_4:24878855-24878874 | None:intergenic | 35.0% | |
| TGTAGTGAAATAAGTCACCA+AGG | + | chr5_4:24878856-24878875 | None:intergenic | 35.0% | |
| ! | ACGACAATTTGTTTCGACTA+AGG | + | chr5_4:24878939-24878958 | None:intergenic | 35.0% |
| TAGTCGAAACAAATTGTCGT+TGG | - | chr5_4:24878939-24878958 | Msa0845610:intron | 35.0% | |
| !! | TGCCATTTCAATCCTTTTAG+GGG | + | chr5_4:24878966-24878985 | None:intergenic | 35.0% |
| !! | GTTGCCATTTCAATCCTTTT+AGG | + | chr5_4:24878968-24878987 | None:intergenic | 35.0% |
| AAAGGATTGAAATGGCAACA+CGG | - | chr5_4:24878969-24878988 | Msa0845610:intron | 35.0% | |
| ! | TACTCCAACACTTTTGTAAC+CGG | + | chr5_4:24879160-24879179 | None:intergenic | 35.0% |
| AGGACAAGTACAAGATTACA+AGG | - | chr5_4:24879260-24879279 | Msa0845610:intron | 35.0% | |
| GGACAAGTACAAGATTACAA+GGG | - | chr5_4:24879261-24879280 | Msa0845610:intron | 35.0% | |
| GACAAGTACAAGATTACAAG+GGG | - | chr5_4:24879262-24879281 | Msa0845610:intron | 35.0% | |
| ACAAGTACAAGATTACAAGG+GGG | - | chr5_4:24879263-24879282 | Msa0845610:intron | 35.0% | |
| TCTTATCAAAGACTATGGAG+AGG | - | chr5_4:24879408-24879427 | Msa0845610:intron | 35.0% | |
| ATACATTCATAAGGTGGCAT+TGG | + | chr5_4:24879550-24879569 | None:intergenic | 35.0% | |
| GCATTCATCAAATTCCCATT+TGG | + | chr5_4:24879670-24879689 | None:intergenic | 35.0% | |
| GGGAATTTGATGAATGCAAA+AGG | - | chr5_4:24879673-24879692 | Msa0845610:intron | 35.0% | |
| GAATGCAAAAGGGAATGAAA+TGG | - | chr5_4:24879684-24879703 | Msa0845610:intron | 35.0% | |
| !!! | GTTTTTGGGATGATTGAAGT+GGG | - | chr5_4:24879706-24879725 | Msa0845610:CDS | 35.0% |
| GAAAACTTGTACTTGAAGGT+TGG | - | chr5_4:24879731-24879750 | Msa0845610:CDS | 35.0% | |
| TGGTGAAATGGGAATCAATA+TGG | - | chr5_4:24879759-24879778 | Msa0845610:CDS | 35.0% | |
| TGGTTGAGCAAATATGTGAA+AGG | - | chr5_4:24879779-24879798 | Msa0845610:CDS | 35.0% | |
| GGTTGAGCAAATATGTGAAA+GGG | - | chr5_4:24879780-24879799 | Msa0845610:CDS | 35.0% | |
| TGTGGAACTAAAGAAGATGA+TGG | - | chr5_4:24879832-24879851 | Msa0845610:CDS | 35.0% | |
| TGAGGAACTTCTTCATCATT+TGG | + | chr5_4:24879919-24879938 | None:intergenic | 35.0% | |
| ATGTAGTTGGGAACAAGAGA+AGG | - | chr5_4:24876233-24876252 | Msa0845610:CDS | 40.0% | |
| AACAAGAGAAGGAAGAGATG+TGG | - | chr5_4:24876244-24876263 | Msa0845610:CDS | 40.0% | |
| ACAAGAGAAGGAAGAGATGT+GGG | - | chr5_4:24876245-24876264 | Msa0845610:CDS | 40.0% | |
| GATGCTCCATTAAACAAGAC+TGG | + | chr5_4:24876310-24876329 | None:intergenic | 40.0% | |
| ! | TTTGAAGCTCACAACTACAC+GGG | + | chr5_4:24876651-24876670 | None:intergenic | 40.0% |
| ! | GTTTGAAGCTCACAACTACA+CGG | + | chr5_4:24876652-24876671 | None:intergenic | 40.0% |
| GTCAAAGTTAGACGTTCGTT+TGG | - | chr5_4:24877085-24877104 | Msa0845610:CDS | 40.0% | |
| CCGGGAACCATTACTATAAT+AGG | + | chr5_4:24877267-24877286 | None:intergenic | 40.0% | |
| ATTCCCTAATATACAGGGGT+CGG | - | chr5_4:24877312-24877331 | Msa0845610:CDS | 40.0% | |
| CTACTTAGTGTCTCCTTTGA+AGG | + | chr5_4:24877732-24877751 | None:intergenic | 40.0% | |
| GAAAGCTGCTGTGATTCAAA+TGG | - | chr5_4:24877765-24877784 | Msa0845610:intron | 40.0% | |
| TTAGAGGGACATATGATGCA+TGG | - | chr5_4:24877828-24877847 | Msa0845610:intron | 40.0% | |
| !! | TGTGTCAATGGATTGGAAAC+TGG | - | chr5_4:24877885-24877904 | Msa0845610:intron | 40.0% |
| ! | GATTTGGTTACCACCCAAAT+TGG | + | chr5_4:24877913-24877932 | None:intergenic | 40.0% |
| TTTGGGTGGTAACCAAATCA+TGG | - | chr5_4:24877914-24877933 | Msa0845610:intron | 40.0% | |
| !! | TGTGCAATGGATTACAAGCA+AGG | - | chr5_4:24877952-24877971 | Msa0845610:intron | 40.0% |
| TGTATGTTTGGTATCACCGT+GGG | + | chr5_4:24878253-24878272 | None:intergenic | 40.0% | |
| TAAGTCATGGACCATTCTTG+GGG | + | chr5_4:24878404-24878423 | None:intergenic | 40.0% | |
| GTTAAGTCATGGACCATTCT+TGG | + | chr5_4:24878406-24878425 | None:intergenic | 40.0% | |
| !! | CAGAAAGTGTTTGGTACCTT+TGG | + | chr5_4:24878817-24878836 | None:intergenic | 40.0% |
| !! | GAGAGTGATCAGAAAGTGTT+TGG | + | chr5_4:24878826-24878845 | None:intergenic | 40.0% |
| GTCCCCTAAAAGGATTGAAA+TGG | - | chr5_4:24878961-24878980 | Msa0845610:intron | 40.0% | |
| AAGGATTGAAATGGCAACAC+GGG | - | chr5_4:24878970-24878989 | Msa0845610:intron | 40.0% | |
| ! | GAATCCGGTTACAAAAGTGT+TGG | - | chr5_4:24879153-24879172 | Msa0845610:intron | 40.0% |
| AATGTTTACCCTTGCCATGA+AGG | - | chr5_4:24879199-24879218 | Msa0845610:intron | 40.0% | |
| ATGTTTACCCTTGCCATGAA+GGG | - | chr5_4:24879200-24879219 | Msa0845610:intron | 40.0% | |
| TACTCATAACCAACCCTTCA+TGG | + | chr5_4:24879216-24879235 | None:intergenic | 40.0% | |
| AGAATTATCCTAGCTGCCAA+TGG | + | chr5_4:24879376-24879395 | None:intergenic | 40.0% | |
| ! | GTTCCTTTGCAAGTTGAGTT+AGG | - | chr5_4:24879430-24879449 | Msa0845610:intron | 40.0% |
| GATCCTAACTCAACTTGCAA+AGG | + | chr5_4:24879436-24879455 | None:intergenic | 40.0% | |
| !! | AGTTTTGTGGTGCAACCAAA+TGG | - | chr5_4:24879652-24879671 | Msa0845610:intron | 40.0% |
| ! | GTTTTGTGGTGCAACCAAAT+GGG | - | chr5_4:24879653-24879672 | Msa0845610:intron | 40.0% |
| !!! | GGTTTTTGGGATGATTGAAG+TGG | - | chr5_4:24879705-24879724 | Msa0845610:CDS | 40.0% |
| GGTGGAAAACTTGTACTTGA+AGG | - | chr5_4:24879727-24879746 | Msa0845610:CDS | 40.0% | |
| ATGTGAAAGGGATCCAAAGA+AGG | - | chr5_4:24879792-24879811 | Msa0845610:CDS | 40.0% | |
| TGTGAAAGGGATCCAAAGAA+GGG | - | chr5_4:24879793-24879812 | Msa0845610:CDS | 40.0% | |
| ! | AGAAGATGATGGTGAGAGAA+TGG | - | chr5_4:24879843-24879862 | Msa0845610:CDS | 40.0% |
| ! | AGAGATGTGGGAGGGTTTTT+AGG | - | chr5_4:24876257-24876276 | Msa0845610:CDS | 45.0% |
| !! | GGGTACCCAGTCTTGTTTAA+TGG | - | chr5_4:24876301-24876320 | Msa0845610:CDS | 45.0% |
| TGAAAACGGGAATGCCTATG+TGG | - | chr5_4:24876383-24876402 | Msa0845610:CDS | 45.0% | |
| TTCCCTAATATACAGGGGTC+GGG | - | chr5_4:24877313-24877332 | Msa0845610:CDS | 45.0% | |
| ATTTCACTTGGGGTTTAGGC+TGG | - | chr5_4:24877664-24877683 | Msa0845610:intron | 45.0% | |
| TTTCACTTGGGGTTTAGGCT+GGG | - | chr5_4:24877665-24877684 | Msa0845610:intron | 45.0% | |
| ! | GTGTCTCCTTTGAAGGTAAC+AGG | + | chr5_4:24877725-24877744 | None:intergenic | 45.0% |
| !! | GGGCATTTGCTATGTGTCAA+TGG | - | chr5_4:24877873-24877892 | Msa0845610:intron | 45.0% |
| ! | GAAACTGGTTCCAATTTGGG+TGG | - | chr5_4:24877900-24877919 | Msa0845610:intron | 45.0% |
| CCGTGGGTATGTCAGAATTA+CGG | + | chr5_4:24878237-24878256 | None:intergenic | 45.0% | |
| CCGTAATTCTGACATACCCA+CGG | - | chr5_4:24878234-24878253 | Msa0845610:intron | 45.0% | |
| GTGTATGTTTGGTATCACCG+TGG | + | chr5_4:24878254-24878273 | None:intergenic | 45.0% | |
| GTTGGGAGAGAAGTAAAGTC+TGG | - | chr5_4:24878297-24878316 | Msa0845610:CDS | 45.0% | |
| CACGTCACAAAAAAGAGGCA+TGG | - | chr5_4:24878601-24878620 | Msa0845610:intron | 45.0% | |
| GAATAGCATACAGTGAGCCA+TGG | - | chr5_4:24878642-24878661 | Msa0845610:intron | 45.0% | |
| GGTCGTTGGGGATACAAATT+TGG | - | chr5_4:24878668-24878687 | Msa0845610:intron | 45.0% | |
| TGGGGATACAAATTTGGTCG+AGG | - | chr5_4:24878674-24878693 | Msa0845610:intron | 45.0% | |
| AGGAACCAATGCATGTTTCG+CGG | + | chr5_4:24878904-24878923 | None:intergenic | 45.0% | |
| ATTGTCGTTGGTCCCCTAAA+AGG | - | chr5_4:24878951-24878970 | Msa0845610:intron | 45.0% | |
| !! | TATCGGAGACACTGGTTTGT+TGG | - | chr5_4:24879069-24879088 | Msa0845610:intron | 45.0% |
| TAACCAACCCTTCATGGCAA+GGG | + | chr5_4:24879210-24879229 | None:intergenic | 45.0% | |
| ATAACCAACCCTTCATGGCA+AGG | + | chr5_4:24879211-24879230 | None:intergenic | 45.0% | |
| TACAAGGGGGCAACTTATGA+AGG | - | chr5_4:24879276-24879295 | Msa0845610:intron | 45.0% | |
| GGGAAATCTATTGGGGGTTA+AGG | - | chr5_4:24879629-24879648 | Msa0845610:intron | 45.0% | |
| ! | TTGGGGGTTAAGGAGTTTTG+TGG | - | chr5_4:24879639-24879658 | Msa0845610:intron | 45.0% |
| ! | TTTGGGATGATTGAAGTGGG+TGG | - | chr5_4:24879709-24879728 | Msa0845610:CDS | 45.0% |
| CTTGTACTTGAAGGTTGGCA+TGG | - | chr5_4:24879736-24879755 | Msa0845610:CDS | 45.0% | |
| GGATCCAAAGAAGGGAATTG+TGG | - | chr5_4:24879801-24879820 | Msa0845610:CDS | 45.0% | |
| CACTCCACAATTCCCTTCTT+TGG | + | chr5_4:24879808-24879827 | None:intergenic | 45.0% | |
| GGAATTGTGGAGTGCATTTG+TGG | - | chr5_4:24879814-24879833 | Msa0845610:CDS | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | - | chr5_4:24876890-24876909 | Msa0845610:CDS | 5.0% |
| !!! | TTAATTTAATTTCTATATAT+TGG | + | chr5_4:24877515-24877534 | None:intergenic | 5.0% |
| AGAGAAGGAAGAGATGTGGG+AGG | - | chr5_4:24876248-24876267 | Msa0845610:CDS | 50.0% | |
| GAGAAGGAAGAGATGTGGGA+GGG | - | chr5_4:24876249-24876268 | Msa0845610:CDS | 50.0% | |
| ! | GCTCACAACTACACGGGTTT+TGG | + | chr5_4:24876645-24876664 | None:intergenic | 50.0% |
| TCCCTAATATACAGGGGTCG+GGG | - | chr5_4:24877314-24877333 | Msa0845610:CDS | 50.0% | |
| ACCCCGACCCCTGTATATTA+GGG | + | chr5_4:24877318-24877337 | None:intergenic | 50.0% | |
| TTCACTTGGGGTTTAGGCTG+GGG | - | chr5_4:24877666-24877685 | Msa0845610:intron | 50.0% | |
| GCATACAGTGAGCCATGGTT+TGG | - | chr5_4:24878647-24878666 | Msa0845610:intron | 50.0% | |
| !! | TGAGCCATGGTTTGGTCGTT+GGG | - | chr5_4:24878655-24878674 | Msa0845610:intron | 50.0% |
| TATCCCCAACGACCAAACCA+TGG | + | chr5_4:24878662-24878681 | None:intergenic | 50.0% | |
| GATCACTCTCTTGTCACCCT+TGG | - | chr5_4:24878836-24878855 | Msa0845610:intron | 50.0% | |
| GAACCAATGCATGTTTCGCG+GGG | + | chr5_4:24878902-24878921 | None:intergenic | 50.0% | |
| GGAACCAATGCATGTTTCGC+GGG | + | chr5_4:24878903-24878922 | None:intergenic | 50.0% | |
| ! | GACTAAGGCGCTAGTGTTGA+AGG | + | chr5_4:24878924-24878943 | None:intergenic | 50.0% |
| ! | GATGCCGCACGTGCTTTTAT+CGG | - | chr5_4:24879052-24879071 | Msa0845610:intron | 50.0% |
| ! | GTCTCCGATAAAAGCACGTG+CGG | + | chr5_4:24879059-24879078 | None:intergenic | 50.0% |
| ! | CGTGCTTTTATCGGAGACAC+TGG | - | chr5_4:24879061-24879080 | Msa0845610:intron | 50.0% |
| TCACTAGGTAACCACGTCGT+TGG | - | chr5_4:24879106-24879125 | Msa0845610:intron | 50.0% | |
| CCAAGTAGTTTCCAACGACG+TGG | + | chr5_4:24879120-24879139 | None:intergenic | 50.0% | |
| CCACGTCGTTGGAAACTACT+TGG | - | chr5_4:24879117-24879136 | Msa0845610:intron | 50.0% | |
| GGTTCGTCGAAGCTTGAATC+CGG | - | chr5_4:24879138-24879157 | Msa0845610:intron | 50.0% | |
| TTACCCTTGCCATGAAGGGT+TGG | - | chr5_4:24879204-24879223 | Msa0845610:intron | 50.0% | |
| CAGCTATACCATTGGCAGCT+AGG | - | chr5_4:24879365-24879384 | Msa0845610:intron | 50.0% | |
| GTACTTGAAGGTTGGCATGG+TGG | - | chr5_4:24879739-24879758 | Msa0845610:CDS | 50.0% | |
| ! | AGGTTGGCATGGTGGTGAAA+TGG | - | chr5_4:24879747-24879766 | Msa0845610:CDS | 50.0% |
| ! | GGTTGGCATGGTGGTGAAAT+GGG | - | chr5_4:24879748-24879767 | Msa0845610:CDS | 50.0% |
| GACCCCGACCCCTGTATATT+AGG | + | chr5_4:24877319-24877338 | None:intergenic | 55.0% | |
| !! | GTGAGCCATGGTTTGGTCGT+TGG | - | chr5_4:24878654-24878673 | Msa0845610:intron | 55.0% |
| !! | GAGCCATGGTTTGGTCGTTG+GGG | - | chr5_4:24878656-24878675 | Msa0845610:intron | 55.0% |
| CTTCCCCGCGAAACATGCAT+TGG | - | chr5_4:24878896-24878915 | Msa0845610:intron | 55.0% | |
| GGCAACACGGGTCATTGTTG+AGG | - | chr5_4:24878982-24879001 | Msa0845610:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 24876220 | 24879996 | 24876220 | ID=Msa0845610;Name=Msa0845610 |
| chr5_4 | mRNA | 24876220 | 24879996 | 24876220 | ID=Msa0845610-mRNA-1;Parent=Msa0845610;Name=Msa0845610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|667 |
| chr5_4 | exon | 24879699 | 24879996 | 24879699 | ID=Msa0845610-mRNA-1:exon:9942;Parent=Msa0845610-mRNA-1 |
| chr5_4 | exon | 24878243 | 24878534 | 24878243 | ID=Msa0845610-mRNA-1:exon:9941;Parent=Msa0845610-mRNA-1 |
| chr5_4 | exon | 24876220 | 24877633 | 24876220 | ID=Msa0845610-mRNA-1:exon:9940;Parent=Msa0845610-mRNA-1 |
| chr5_4 | CDS | 24879699 | 24879996 | 24879699 | ID=Msa0845610-mRNA-1:cds;Parent=Msa0845610-mRNA-1 |
| chr5_4 | CDS | 24878243 | 24878534 | 24878243 | ID=Msa0845610-mRNA-1:cds;Parent=Msa0845610-mRNA-1 |
| chr5_4 | CDS | 24876220 | 24877633 | 24876220 | ID=Msa0845610-mRNA-1:cds;Parent=Msa0845610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
