AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0845640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0845640 MtrunA17_Chr5g0417211 78.742 461 46 4 1 460 1 410 0.0 704
Msa0845640 MtrunA17_Chr5g0417281 63.359 524 115 9 1 456 1 515 0.0 613
Msa0845640 MtrunA17_Chr5g0436761 60.470 468 157 7 1 450 1 458 0.0 533
Msa0845640 MtrunA17_Chr2g0289221 71.160 319 83 5 1 316 9 321 7.82e-155 443
Msa0845640 MtrunA17_Chr5g0424931 48.881 536 178 13 1 456 8 527 3.45e-152 443
Msa0845640 MtrunA17_Chr2g0277461 48.745 478 186 12 4 454 5 450 2.29e-135 397
Msa0845640 MtrunA17_Chr1g0178011 48.387 465 200 16 1 448 1 442 3.86e-127 376
Msa0845640 MtrunA17_Chr3g0115271 42.857 455 211 10 2 415 9 455 3.99e-105 324
Msa0845640 MtrunA17_Chr5g0424801 48.413 378 160 11 1 362 1 359 9.97e-104 313
Msa0845640 MtrunA17_Chr5g0425261 48.413 378 160 11 1 362 1 359 2.74e-100 305
Msa0845640 MtrunA17_Chr5g0424741 43.004 486 191 15 1 411 1 475 1.11e-97 303
Msa0845640 MtrunA17_Chr2g0326761 38.075 478 213 14 9 424 8 464 2.87e-90 289
Msa0845640 MtrunA17_Chr2g0277531 46.708 319 148 9 6 316 14 318 6.47e-86 266
Msa0845640 MtrunA17_Chr1g0181211 37.391 460 207 11 9 405 24 465 4.51e-85 275
Msa0845640 MtrunA17_Chr4g0028971 37.029 478 208 13 1 410 1 453 1.60e-83 271
Msa0845640 MtrunA17_Chr1g0199681 37.879 462 206 13 9 408 91 533 3.21e-83 270
Msa0845640 MtrunA17_Chr7g0264171 35.021 474 214 16 9 411 28 478 8.99e-78 254
Msa0845640 MtrunA17_Chr7g0264161 39.557 316 152 9 23 316 3 301 1.20e-66 216
Msa0845640 MtrunA17_Chr5g0425661 55.051 198 83 2 9 203 34 228 5.82e-66 211
Msa0845640 MtrunA17_Chr4g0046371 32.873 362 184 11 12 337 38 376 3.14e-51 184
Msa0845640 MtrunA17_Chr2g0282961 32.386 352 195 10 12 337 53 387 6.06e-51 182
Msa0845640 MtrunA17_Chr4g0009751 30.894 369 219 8 10 356 17 371 8.33e-51 182
Msa0845640 MtrunA17_Chr2g0276781 34.711 363 208 9 12 356 23 374 1.14e-50 182
Msa0845640 MtrunA17_Chr2g0285461 32.190 379 206 13 9 359 20 375 9.61e-50 182
Msa0845640 MtrunA17_Chr7g0239061 33.333 369 207 12 12 357 14 366 1.43e-49 179
Msa0845640 MtrunA17_Chr8g0385791 32.778 360 220 9 12 356 59 411 1.71e-49 181
Msa0845640 MtrunA17_Chr8g0376771 32.190 379 205 13 9 359 20 374 6.84e-49 179
Msa0845640 MtrunA17_Chr2g0326281 33.416 401 222 14 12 373 56 450 1.93e-48 177
Msa0845640 MtrunA17_Chr8g0389081 32.500 360 196 11 9 340 29 369 7.64e-48 177
Msa0845640 MtrunA17_Chr5g0433301 31.830 377 210 13 9 359 21 376 1.94e-47 175
Msa0845640 MtrunA17_Chr3g0109391 31.565 377 211 13 9 359 23 378 1.50e-46 172
Msa0845640 MtrunA17_Chr8g0346711 33.430 344 197 11 12 337 29 358 1.84e-45 168
Msa0845640 MtrunA17_Chr4g0029671 34.239 368 214 11 12 356 54 416 5.43e-45 167
Msa0845640 MtrunA17_Chr1g0156321 32.011 353 200 13 9 337 40 376 7.31e-45 167
Msa0845640 MtrunA17_Chr2g0301251 31.461 356 201 11 9 339 20 357 3.07e-44 166
Msa0845640 MtrunA17_Chr4g0070181 30.055 366 218 11 9 351 20 370 8.65e-44 165
Msa0845640 MtrunA17_Chr5g0425651 48.800 125 52 4 235 351 2 122 1.13e-30 115
Msa0845640 MtrunA17_Chr5g0424791 45.890 146 67 5 61 204 12 147 6.26e-30 114
Msa0845640 MtrunA17_Chr8g0356211 28.369 282 166 9 120 379 2 269 1.48e-24 103
Msa0845640 MtrunA17_Chr5g0419861 41.228 114 58 4 53 161 15 124 3.64e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0845640 AT1G77850.1 39.644 449 211 13 9 410 16 451 2.28e-102 317
Msa0845640 AT1G77850.2 39.644 449 211 13 9 410 16 451 3.06e-102 317
Msa0845640 AT4G30080.1 39.427 454 201 12 9 406 16 451 1.78e-88 283
Msa0845640 AT2G28350.2 39.762 420 172 13 4 359 2 404 4.18e-83 270
Msa0845640 AT2G28350.1 39.762 420 172 13 4 359 2 404 6.54e-83 270
Msa0845640 AT2G33860.1 34.758 351 188 10 12 337 54 388 1.77e-54 192
Msa0845640 AT4G23980.2 33.908 348 199 10 12 341 12 346 3.73e-53 189
Msa0845640 AT4G23980.1 33.908 348 199 10 12 341 12 346 3.91e-53 189
Msa0845640 AT3G61830.1 33.618 351 197 10 7 337 20 354 2.72e-51 183
Msa0845640 AT5G60450.2 36.723 354 189 12 9 337 38 381 1.49e-50 183
Msa0845640 AT1G35520.1 34.973 366 197 13 12 356 27 372 1.97e-50 181
Msa0845640 AT5G60450.1 36.723 354 189 12 9 337 62 405 2.17e-50 183
Msa0845640 AT2G46530.1 34.571 350 191 12 12 340 21 353 3.25e-50 180
Msa0845640 AT2G46530.3 34.571 350 191 12 12 340 42 374 7.02e-50 179
Msa0845640 AT5G37020.2 31.903 373 215 12 9 359 19 374 1.07e-49 181
Msa0845640 AT5G37020.1 31.903 373 215 12 9 359 19 374 1.24e-49 181
Msa0845640 AT1G59750.4 32.329 365 211 10 12 354 22 372 3.98e-49 178
Msa0845640 AT1G59750.2 32.329 365 211 10 12 354 22 372 4.07e-49 178
Msa0845640 AT1G59750.1 32.329 365 211 10 12 354 22 372 5.26e-49 178
Msa0845640 AT1G59750.3 32.329 365 211 10 12 354 22 372 5.26e-49 178
Msa0845640 AT1G19850.2 33.621 348 202 11 9 337 40 377 9.17e-48 176
Msa0845640 AT1G19850.1 33.621 348 202 11 9 337 51 388 1.09e-47 176
Msa0845640 AT5G62000.4 32.778 360 220 9 12 356 61 413 1.44e-47 176
Msa0845640 AT5G62000.2 32.778 360 220 9 12 356 61 413 1.49e-47 176
Msa0845640 AT5G62000.5 32.778 360 220 9 12 356 61 413 1.49e-47 176
Msa0845640 AT5G62000.3 32.778 360 220 9 12 356 61 413 1.49e-47 176
Msa0845640 AT5G62000.1 32.778 360 220 9 12 356 61 413 1.49e-47 176
Msa0845640 AT1G30330.3 31.300 377 212 12 9 359 22 377 1.57e-47 176
Msa0845640 AT1G30330.2 31.300 377 212 12 9 359 22 377 1.57e-47 176
Msa0845640 AT1G30330.1 31.300 377 212 12 9 359 20 375 1.63e-47 176
Msa0845640 AT1G34410.1 33.333 366 203 13 12 356 27 372 1.12e-46 171
Msa0845640 AT1G34310.1 33.515 367 201 13 12 356 27 372 1.23e-46 170
Msa0845640 AT1G34390.1 32.787 366 203 13 12 356 27 370 6.19e-46 168
Msa0845640 AT1G35240.1 31.695 407 234 14 12 397 27 410 9.36e-46 168
Msa0845640 AT1G19220.1 30.789 380 207 13 9 356 20 375 1.39e-44 167
Msa0845640 AT1G35540.1 33.526 346 190 12 12 337 27 352 4.15e-44 163
Msa0845640 AT5G20730.3 30.458 371 215 11 9 353 21 374 3.91e-43 163
Msa0845640 AT5G20730.1 30.458 371 215 11 9 353 21 374 4.71e-43 163
Msa0845640 AT5G20730.2 30.728 371 213 12 9 353 21 373 1.28e-42 162
Msa0845640 AT3G61830.2 34.797 296 160 9 59 337 24 303 7.29e-41 154
Msa0845640 AT2G33860.2 36.402 239 126 7 114 337 4 231 9.19e-40 149
Msa0845640 AT1G34170.1 32.092 349 193 13 12 337 25 352 4.56e-39 148
Msa0845640 AT5G37020.3 33.333 258 149 8 114 359 33 279 2.53e-36 142
Msa0845640 AT2G46530.2 36.364 242 125 9 114 340 39 266 3.65e-35 137
Msa0845640 AT1G34170.2 31.563 339 182 13 12 337 25 326 1.90e-33 132
Msa0845640 AT1G34170.3 31.563 339 182 13 12 337 25 326 4.83e-33 131
Msa0845640 AT1G43950.1 35.514 214 113 6 12 218 27 222 7.95e-29 113
Msa0845640 ATMG00940.1 36.434 129 76 4 185 312 21 144 4.79e-19 84.7

Find 121 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCAATATCATAGGTTAAT+TGG 0.114277 5_4:+24933337 Msa0845640:intron
AGGATTCCATTTAATCTTAA+TGG 0.197798 5_4:-24932496 None:intergenic
CCTGGTTCAATTATGTTATT+TGG 0.201738 5_4:+24933672 Msa0845640:CDS
GGGAGAGTGTGCTAGGGTTT+GGG 0.238185 5_4:-24931822 None:intergenic
CATGTTTACTACTTCCCATT+AGG 0.255048 5_4:+24931775 Msa0845640:CDS
GAAGAATGAAACTCTATCTT+TGG 0.278889 5_4:-24933525 None:intergenic
AGGGAGAGTGTGCTAGGGTT+TGG 0.295398 5_4:-24931823 None:intergenic
GGAACCAGCTGCGAGACTTT+AGG 0.303836 5_4:-24933366 None:intergenic
ATGTGTTCTAAGTGCCCTAA+TGG 0.313804 5_4:-24931790 None:intergenic
AGGAAGCCATTAAGATTAAA+TGG 0.321373 5_4:+24932490 Msa0845640:CDS
TAAACATGAGAATGTAGTTT+TGG 0.329887 5_4:-24931760 None:intergenic
GGGGTTGAGGTTGTTTCCTC+TGG 0.346967 5_4:+24932003 Msa0845640:CDS
ATGTTTACTACTTCCCATTA+GGG 0.360944 5_4:+24931776 Msa0845640:CDS
GTCAATATCATAGGTTAATT+GGG 0.372441 5_4:+24933338 Msa0845640:intron
CACTCCAGTTGGTGGTGATC+AGG 0.388147 5_4:-24932212 None:intergenic
GGAATCCGCCGGCAGAAGTT+TGG 0.393817 5_4:+24932333 Msa0845640:CDS
ATTCAACGATGTTTCATTGA+AGG 0.414006 5_4:-24933559 None:intergenic
AAAATCTGGCAGTGCTGCGC+CGG 0.416464 5_4:+24931721 Msa0845640:CDS
TGTAATTAATGCTAAGGTTG+TGG 0.421807 5_4:+24932467 Msa0845640:CDS
TGCTTTGCTCGATGACATAC+AGG 0.424836 5_4:+24933587 Msa0845640:CDS
AAATCTGGCAGTGCTGCGCC+GGG 0.428406 5_4:+24931722 Msa0845640:CDS
GGTTACCGAGGCTGTAGAAT+TGG 0.432772 5_4:+24932383 Msa0845640:CDS
AGCATGCGCCATGGACGATT+AGG 0.434996 5_4:-24932606 None:intergenic
GAAAGTTTAATTCTCAATCC+AGG 0.435368 5_4:-24932516 None:intergenic
TCCCAAGGATTGACTCGCTC+TGG 0.437814 5_4:-24933387 None:intergenic
AGATAGAGTTTCATTCTTCA+AGG 0.449634 5_4:+24933529 Msa0845640:CDS
TGCCTTACACAATGATATAG+AGG 0.453622 5_4:+24933488 Msa0845640:CDS
TTCCAGAGCGAGTCAATCCT+TGG 0.459932 5_4:+24933385 Msa0845640:CDS
ATTAAGATTAAATGGAATCC+TGG 0.463670 5_4:+24932498 Msa0845640:CDS
CTGACATTCACGGCAAAGAA+TGG 0.464546 5_4:+24932151 Msa0845640:CDS
TTTACACGATTCAGATATCA+AGG 0.473052 5_4:+24933722 Msa0845640:CDS
TTGGTGAAGACGAAGATGAC+GGG 0.478219 5_4:+24931983 Msa0845640:CDS
TGGAGAAGGGAGAGTGTGCT+AGG 0.478757 5_4:-24931829 None:intergenic
GGAGAGTGTGCTAGGGTTTG+GGG 0.481560 5_4:-24931821 None:intergenic
ATCAACCGCGGAGACGGTGC+AGG 0.485860 5_4:-24931872 None:intergenic
CCAGGCCGAAAAGCCGTCTC+AGG 0.490565 5_4:+24932116 Msa0845640:CDS
GAGACGGTGCAGGGAATGAA+TGG 0.491412 5_4:-24931862 None:intergenic
ACTGATTGGTGGTGATTCCT+TGG 0.497482 5_4:+24932254 Msa0845640:CDS
TGTGTTCTAAGTGCCCTAAT+GGG 0.500812 5_4:-24931789 None:intergenic
TTCAATGAAACATCGTTGAA+TGG 0.505614 5_4:+24933561 Msa0845640:CDS
TCGTGTAAATCACTTCCAAC+AGG 0.511200 5_4:-24933708 None:intergenic
TCCCTCTATATCATTGTGTA+AGG 0.511256 5_4:-24933490 None:intergenic
CTCTCAATCACTGACATTCA+CGG 0.514627 5_4:+24932141 Msa0845640:CDS
GACACCTGATCACCACCAAC+TGG 0.514844 5_4:+24932208 Msa0845640:CDS
ATGAAACTCTATCTTTGGAA+TGG 0.518071 5_4:-24933520 None:intergenic
AGCACACTCTCCCTTCTCCA+TGG 0.523233 5_4:+24931832 Msa0845640:CDS
AGACGAAGATGACGGGGTTG+AGG 0.523787 5_4:+24931990 Msa0845640:CDS
TCCAGAGCGAGTCAATCCTT+GGG 0.524302 5_4:+24933386 Msa0845640:CDS
CTCCGCCAATTCTACAGCCT+CGG 0.528093 5_4:-24932388 None:intergenic
TCTTCGTCTTCACCAACCTC+AGG 0.531377 5_4:-24931976 None:intergenic
CCTCAGGAGGTTCGTGGACA+CGG 0.532546 5_4:-24931960 None:intergenic
TGGCAGCACCAAACTTCTGC+CGG 0.534995 5_4:-24932341 None:intergenic
ATTCCCACTACTTGACCTCC+AGG 0.536463 5_4:+24932098 Msa0845640:CDS
GATTCCAACGGAGATCGTTA+CGG 0.541776 5_4:-24932316 None:intergenic
GTTGACGAGAAGAAACTGAT+TGG 0.549713 5_4:+24932240 Msa0845640:CDS
GAGTAGATCAACCGCGGAGA+CGG 0.550031 5_4:-24931878 None:intergenic
TCGTCCATGGCGCATGCTTG+AGG 0.553392 5_4:+24932611 Msa0845640:CDS
CGGCCTGGAGGTCAAGTAGT+GGG 0.553800 5_4:-24932101 None:intergenic
CACCAACCTCAGGAGGTTCG+TGG 0.556703 5_4:-24931966 None:intergenic
TGAACCTAAAGTCTCGCAGC+TGG 0.558455 5_4:+24933362 Msa0845640:CDS
TACCGAGGCTGTAGAATTGG+CGG 0.561717 5_4:+24932386 Msa0845640:CDS
GGTGGTGATCAGGTGTCGCA+AGG 0.563669 5_4:-24932202 None:intergenic
AGCTTCGCCACGTCTACCGT+GGG 0.564056 5_4:+24932175 Msa0845640:CDS
GTGGACACGGTCGTTAGTGA+CGG 0.566445 5_4:-24931947 None:intergenic
TCGATGACATACAGGGAGCC+AGG 0.566923 5_4:+24933595 Msa0845640:CDS
AGTGTGCTAGGGTTTGGGGA+TGG 0.567118 5_4:-24931817 None:intergenic
CGGTGCAGGGAATGAATGGA+CGG 0.567424 5_4:-24931858 None:intergenic
GAATGAATGGACGGGAACCA+TGG 0.573275 5_4:-24931849 None:intergenic
GTGTATTATCCTACTGCTGA+AGG 0.576265 5_4:+24932432 Msa0845640:CDS
CGATCTCCGTTGGAATCCGC+CGG 0.580469 5_4:+24932322 Msa0845640:CDS
TCACACCAACCTTCAGCAGT+AGG 0.580736 5_4:-24932441 None:intergenic
TATCTGCTCCTAATCGTCCA+TGG 0.582308 5_4:+24932598 Msa0845640:CDS
AAACTCTATCTTTGGAATGG+AGG 0.582472 5_4:-24933517 None:intergenic
AACAAACTCACTCCAGTTGG+TGG 0.582643 5_4:-24932220 None:intergenic
ATGGACGGGAACCATGGAGA+AGG 0.582820 5_4:-24931843 None:intergenic
GTTAGGTTGCTGAGGAGACA+TGG 0.585884 5_4:-24931686 None:intergenic
TGGACGGGAACCATGGAGAA+GGG 0.587085 5_4:-24931842 None:intergenic
GGTCAGATCATACGTCCTGT+TGG 0.588139 5_4:+24933693 Msa0845640:CDS
ATTATCCTACTGCTGAAGGT+TGG 0.588623 5_4:+24932436 Msa0845640:CDS
TGGACACGGTCGTTAGTGAC+GGG 0.588676 5_4:-24931946 None:intergenic
TCGTCTTCACCAACCTCAGG+AGG 0.589597 5_4:-24931973 None:intergenic
CCAAATAACATAATTGAACC+AGG 0.590972 5_4:-24933672 None:intergenic
GTTGGTGAAGACGAAGATGA+CGG 0.596802 5_4:+24931982 Msa0845640:CDS
ACTCCGTCTGATGCTAATAA+CGG 0.598328 5_4:+24932036 Msa0845640:CDS
TGGATGTAGTGCATGTATGT+TGG 0.599102 5_4:-24933424 None:intergenic
GAAATAAGCTCAACCTCCCA+AGG 0.599689 5_4:-24933402 None:intergenic
TACACGATTCAGATATCAAG+GGG 0.600673 5_4:+24933724 Msa0845640:CDS
GTCCACGAACCTCCTGAGGT+TGG 0.604246 5_4:+24931964 Msa0845640:CDS
GGTCGTTAGTGACGGGAGTG+AGG 0.605482 5_4:-24931939 None:intergenic
AATTAATGCTAAGGTTGTGG+AGG 0.606120 5_4:+24932470 Msa0845640:CDS
AGAATTGGCGGAGAAGAACA+TGG 0.611636 5_4:+24932398 Msa0845640:CDS
GCCTTACACAATGATATAGA+GGG 0.612818 5_4:+24933489 Msa0845640:CDS
ACTGCCGTAACGATCTCCGT+TGG 0.613324 5_4:+24932312 Msa0845640:CDS
AGGGAGTCCCACGGTAGACG+TGG 0.627277 5_4:-24932182 None:intergenic
CTTCTGCCGGCGGATTCCAA+CGG 0.627932 5_4:-24932328 None:intergenic
GTGGTGATCAGGTGTCGCAA+GGG 0.628071 5_4:-24932201 None:intergenic
TATACCTCAAGCATGCGCCA+TGG 0.631418 5_4:-24932615 None:intergenic
GGTGCAGGGAATGAATGGAC+GGG 0.631616 5_4:-24931857 None:intergenic
TCGGCCTGGAGGTCAAGTAG+TGG 0.634534 5_4:-24932102 None:intergenic
CAGCACCAAACTTCTGCCGG+CGG 0.635134 5_4:-24932338 None:intergenic
TTACACGATTCAGATATCAA+GGG 0.635502 5_4:+24933723 Msa0845640:CDS
GTCAACAAACTCACTCCAGT+TGG 0.636827 5_4:-24932223 None:intergenic
TCAACCGCGGAGACGGTGCA+GGG 0.637633 5_4:-24931871 None:intergenic
TCAATACGGTTAGGTTGCTG+AGG 0.643017 5_4:-24931694 None:intergenic
AAGCTTCGCCACGTCTACCG+TGG 0.643601 5_4:+24932174 Msa0845640:CDS
CCGTGTCCACGAACCTCCTG+AGG 0.644301 5_4:+24931960 Msa0845640:CDS
GTGATTGAGAGTTCCTGAGA+CGG 0.645076 5_4:-24932129 None:intergenic
TAGTTTGACGAAGACTTCGT+CGG 0.645961 5_4:-24931914 None:intergenic
AGAGCGAGTCAATCCTTGGG+AGG 0.646918 5_4:+24933389 Msa0845640:CDS
GGAGAAGGGAGAGTGTGCTA+GGG 0.651561 5_4:-24931828 None:intergenic
GACGAGAAGAAACTGATTGG+TGG 0.658536 5_4:+24932243 Msa0845640:CDS
GCTTTGCTCGATGACATACA+GGG 0.667174 5_4:+24933588 Msa0845640:CDS
CCACCGTTATTAGCATCAGA+CGG 0.670947 5_4:-24932039 None:intergenic
CATTCCCTGCACCGTCTCCG+CGG 0.679524 5_4:+24931867 Msa0845640:CDS
GTCAGCGAGTAGATCAACCG+CGG 0.683086 5_4:-24931884 None:intergenic
AATCTGGCAGTGCTGCGCCG+GGG 0.689579 5_4:+24931723 Msa0845640:CDS
GGTGTCGCAAGGGAGTCCCA+CGG 0.699974 5_4:-24932191 None:intergenic
TGGTGAAGACGAAGATGACG+GGG 0.701347 5_4:+24931984 Msa0845640:CDS
GCAGTTGGAAGAAGTTGATG+CGG 0.705608 5_4:-24933631 None:intergenic
CCGTCTGATGCTAATAACGG+TGG 0.711385 5_4:+24932039 Msa0845640:CDS
ACACGATTCAGATATCAAGG+GGG 0.776881 5_4:+24933725 Msa0845640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTAATAAATGTTAT+CGG + chr5_4:24932703-24932722 Msa0845640:intron 10.0%
!!! TTTTGTTTAATAAATGTTAT+CGG + chr5_4:24932703-24932722 Msa0845640:intron 10.0%
!!! AACATTAATGTTTAAGATAA+GGG - chr5_4:24933006-24933025 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGAGCAAA+TGG + chr5_4:24933166-24933185 Msa0845640:intron 15.0%
!!! ACATCTCATTTTATTTTTTA+GGG - chr5_4:24933282-24933301 None:intergenic 15.0%
!!! AACATCTCATTTTATTTTTT+AGG - chr5_4:24933283-24933302 None:intergenic 15.0%
!!! AACATTAATGTTTAAGATAA+GGG - chr5_4:24933006-24933025 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGAGCAAA+TGG + chr5_4:24933166-24933185 Msa0845640:intron 15.0%
!!! ACATCTCATTTTATTTTTTA+GGG - chr5_4:24933282-24933301 None:intergenic 15.0%
!!! AACATCTCATTTTATTTTTT+AGG - chr5_4:24933283-24933302 None:intergenic 15.0%
!!! ATGTAGTTTTGGAATTTTAA+AGG - chr5_4:24931752-24931771 None:intergenic 20.0%
!!! TGATTTTGTAATTAATGCTA+AGG + chr5_4:24932461-24932480 Msa0845640:CDS 20.0%
!!! TTTTTTGATCAATTCATGTT+AGG + chr5_4:24932757-24932776 Msa0845640:intron 20.0%
!!! CAACATTAATGTTTAAGATA+AGG - chr5_4:24933007-24933026 None:intergenic 20.0%
!! AGAAACTTTATACTTGAAAT+AGG + chr5_4:24933133-24933152 Msa0845640:intron 20.0%
!!! CAAAATTCGCTATATTTTTA+GGG - chr5_4:24933251-24933270 None:intergenic 20.0%
!!! TCAAAATTCGCTATATTTTT+AGG - chr5_4:24933252-24933271 None:intergenic 20.0%
!!! ATTTTTCATGTCAATATCAT+AGG + chr5_4:24933329-24933348 Msa0845640:intron 20.0%
!!! ATGTAGTTTTGGAATTTTAA+AGG - chr5_4:24931752-24931771 None:intergenic 20.0%
!!! TGATTTTGTAATTAATGCTA+AGG + chr5_4:24932461-24932480 Msa0845640:CDS 20.0%
!!! TTTTTTGATCAATTCATGTT+AGG + chr5_4:24932757-24932776 Msa0845640:intron 20.0%
!!! CAACATTAATGTTTAAGATA+AGG - chr5_4:24933007-24933026 None:intergenic 20.0%
!! AGAAACTTTATACTTGAAAT+AGG + chr5_4:24933133-24933152 Msa0845640:intron 20.0%
!!! CAAAATTCGCTATATTTTTA+GGG - chr5_4:24933251-24933270 None:intergenic 20.0%
!!! TCAAAATTCGCTATATTTTT+AGG - chr5_4:24933252-24933271 None:intergenic 20.0%
!!! ATTTTTCATGTCAATATCAT+AGG + chr5_4:24933329-24933348 Msa0845640:intron 20.0%
!! TAAACATGAGAATGTAGTTT+TGG - chr5_4:24931763-24931782 None:intergenic 25.0%
!!! TGATTTTTTCATGAAAACCA+AGG - chr5_4:24932274-24932293 None:intergenic 25.0%
! CACTAAGATAACAGAAAAAT+CGG + chr5_4:24932362-24932381 Msa0845640:CDS 25.0%
! AGGATTCCATTTAATCTTAA+TGG - chr5_4:24932499-24932518 None:intergenic 25.0%
! ATTAAGATTAAATGGAATCC+TGG + chr5_4:24932498-24932517 Msa0845640:CDS 25.0%
! TGTTCCAATGTGAAAAATAT+AGG + chr5_4:24932787-24932806 Msa0845640:intron 25.0%
!! ATAGCCTATATTTTTCACAT+TGG - chr5_4:24932794-24932813 None:intergenic 25.0%
! GTTGTGCAATTAAATTTAAG+TGG + chr5_4:24933023-24933042 Msa0845640:intron 25.0%
! TACGATATGACTCATAAAAA+AGG - chr5_4:24933056-24933075 None:intergenic 25.0%
! ATTGTAGTTAATTCATGATG+TGG - chr5_4:24933079-24933098 None:intergenic 25.0%
!!! AGTCATTGTAGTTTTTTTTG+AGG - chr5_4:24933111-24933130 None:intergenic 25.0%
!!! GATGTTTTAAATGATTGACA+CGG + chr5_4:24933297-24933316 Msa0845640:intron 25.0%
! TGTCAATATCATAGGTTAAT+TGG + chr5_4:24933337-24933356 Msa0845640:intron 25.0%
! GTCAATATCATAGGTTAATT+GGG + chr5_4:24933338-24933357 Msa0845640:intron 25.0%
!! TAAACATGAGAATGTAGTTT+TGG - chr5_4:24931763-24931782 None:intergenic 25.0%
!!! TGATTTTTTCATGAAAACCA+AGG - chr5_4:24932274-24932293 None:intergenic 25.0%
! CACTAAGATAACAGAAAAAT+CGG + chr5_4:24932362-24932381 Msa0845640:CDS 25.0%
! AGGATTCCATTTAATCTTAA+TGG - chr5_4:24932499-24932518 None:intergenic 25.0%
! ATTAAGATTAAATGGAATCC+TGG + chr5_4:24932498-24932517 Msa0845640:CDS 25.0%
! TGTTCCAATGTGAAAAATAT+AGG + chr5_4:24932787-24932806 Msa0845640:intron 25.0%
!! ATAGCCTATATTTTTCACAT+TGG - chr5_4:24932794-24932813 None:intergenic 25.0%
! GTTGTGCAATTAAATTTAAG+TGG + chr5_4:24933023-24933042 Msa0845640:intron 25.0%
! TACGATATGACTCATAAAAA+AGG - chr5_4:24933056-24933075 None:intergenic 25.0%
! ATTGTAGTTAATTCATGATG+TGG - chr5_4:24933079-24933098 None:intergenic 25.0%
!!! AGTCATTGTAGTTTTTTTTG+AGG - chr5_4:24933111-24933130 None:intergenic 25.0%
!!! GATGTTTTAAATGATTGACA+CGG + chr5_4:24933297-24933316 Msa0845640:intron 25.0%
! TGTCAATATCATAGGTTAAT+TGG + chr5_4:24933337-24933356 Msa0845640:intron 25.0%
! GTCAATATCATAGGTTAATT+GGG + chr5_4:24933338-24933357 Msa0845640:intron 25.0%
!! ATTTTTGGATCAATACGGTT+AGG - chr5_4:24931706-24931725 None:intergenic 30.0%
ATGTTTACTACTTCCCATTA+GGG + chr5_4:24931776-24931795 Msa0845640:CDS 30.0%
! GTTTTCATGAAAAAATCAGC+TGG + chr5_4:24932276-24932295 Msa0845640:CDS 30.0%
! CGATTTTTCTGTTATCTTAG+TGG - chr5_4:24932364-24932383 None:intergenic 30.0%
TGTAATTAATGCTAAGGTTG+TGG + chr5_4:24932467-24932486 Msa0845640:CDS 30.0%
AGGAAGCCATTAAGATTAAA+TGG + chr5_4:24932490-24932509 Msa0845640:CDS 30.0%
GAAAGTTTAATTCTCAATCC+AGG - chr5_4:24932519-24932538 None:intergenic 30.0%
! AAAGAGATGCTCAAATTTTG+AGG + chr5_4:24932560-24932579 Msa0845640:CDS 30.0%
! AAGAGATGCTCAAATTTTGA+GGG + chr5_4:24932561-24932580 Msa0845640:CDS 30.0%
AATGTTATCGGTCAAAGTTA+TGG + chr5_4:24932715-24932734 Msa0845640:intron 30.0%
TCAAAGTTATGGTTCATGTT+AGG + chr5_4:24932726-24932745 Msa0845640:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + chr5_4:24932838-24932857 Msa0845640:intron 30.0%
! ATGAAACTCTATCTTTGGAA+TGG - chr5_4:24933523-24933542 None:intergenic 30.0%
GAAGAATGAAACTCTATCTT+TGG - chr5_4:24933528-24933547 None:intergenic 30.0%
AGATAGAGTTTCATTCTTCA+AGG + chr5_4:24933529-24933548 Msa0845640:CDS 30.0%
ATTCAACGATGTTTCATTGA+AGG - chr5_4:24933562-24933581 None:intergenic 30.0%
TTCAATGAAACATCGTTGAA+TGG + chr5_4:24933561-24933580 Msa0845640:CDS 30.0%
CCAAATAACATAATTGAACC+AGG - chr5_4:24933675-24933694 None:intergenic 30.0%
CCTGGTTCAATTATGTTATT+TGG + chr5_4:24933672-24933691 Msa0845640:CDS 30.0%
TTTACACGATTCAGATATCA+AGG + chr5_4:24933722-24933741 Msa0845640:CDS 30.0%
TTACACGATTCAGATATCAA+GGG + chr5_4:24933723-24933742 Msa0845640:CDS 30.0%
! TATTTTCATTGCATCCTCTA+CGG - chr5_4:24933758-24933777 None:intergenic 30.0%
!! ATTTTTGGATCAATACGGTT+AGG - chr5_4:24931706-24931725 None:intergenic 30.0%
ATGTTTACTACTTCCCATTA+GGG + chr5_4:24931776-24931795 Msa0845640:CDS 30.0%
! GTTTTCATGAAAAAATCAGC+TGG + chr5_4:24932276-24932295 Msa0845640:CDS 30.0%
! CGATTTTTCTGTTATCTTAG+TGG - chr5_4:24932364-24932383 None:intergenic 30.0%
TGTAATTAATGCTAAGGTTG+TGG + chr5_4:24932467-24932486 Msa0845640:CDS 30.0%
AGGAAGCCATTAAGATTAAA+TGG + chr5_4:24932490-24932509 Msa0845640:CDS 30.0%
GAAAGTTTAATTCTCAATCC+AGG - chr5_4:24932519-24932538 None:intergenic 30.0%
! AAAGAGATGCTCAAATTTTG+AGG + chr5_4:24932560-24932579 Msa0845640:CDS 30.0%
! AAGAGATGCTCAAATTTTGA+GGG + chr5_4:24932561-24932580 Msa0845640:CDS 30.0%
AATGTTATCGGTCAAAGTTA+TGG + chr5_4:24932715-24932734 Msa0845640:intron 30.0%
TCAAAGTTATGGTTCATGTT+AGG + chr5_4:24932726-24932745 Msa0845640:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + chr5_4:24932838-24932857 Msa0845640:intron 30.0%
! ATGAAACTCTATCTTTGGAA+TGG - chr5_4:24933523-24933542 None:intergenic 30.0%
GAAGAATGAAACTCTATCTT+TGG - chr5_4:24933528-24933547 None:intergenic 30.0%
AGATAGAGTTTCATTCTTCA+AGG + chr5_4:24933529-24933548 Msa0845640:CDS 30.0%
ATTCAACGATGTTTCATTGA+AGG - chr5_4:24933562-24933581 None:intergenic 30.0%
TTCAATGAAACATCGTTGAA+TGG + chr5_4:24933561-24933580 Msa0845640:CDS 30.0%
CCAAATAACATAATTGAACC+AGG - chr5_4:24933675-24933694 None:intergenic 30.0%
CCTGGTTCAATTATGTTATT+TGG + chr5_4:24933672-24933691 Msa0845640:CDS 30.0%
TTTACACGATTCAGATATCA+AGG + chr5_4:24933722-24933741 Msa0845640:CDS 30.0%
TTACACGATTCAGATATCAA+GGG + chr5_4:24933723-24933742 Msa0845640:CDS 30.0%
! TATTTTCATTGCATCCTCTA+CGG - chr5_4:24933758-24933777 None:intergenic 30.0%
! ACCGTATTGATCCAAAAATC+TGG + chr5_4:24931707-24931726 Msa0845640:CDS 35.0%
!! GCCAGATTTTTGGATCAATA+CGG - chr5_4:24931711-24931730 None:intergenic 35.0%
CATGTTTACTACTTCCCATT+AGG + chr5_4:24931775-24931794 Msa0845640:CDS 35.0%
! ATTAATTTTGCGCATTCGCT+AGG - chr5_4:24932078-24932097 None:intergenic 35.0%
ATGAAAAAATCAGCTGGAAC+TGG + chr5_4:24932282-24932301 Msa0845640:CDS 35.0%
AATTAATGCTAAGGTTGTGG+AGG + chr5_4:24932470-24932489 Msa0845640:CDS 35.0%
CTATTTGTCACAATTCAAGG+AGG - chr5_4:24932914-24932933 None:intergenic 35.0%
GCACTATTTGTCACAATTCA+AGG - chr5_4:24932917-24932936 None:intergenic 35.0%
!!! TCCTAAGCTTTTTTGTTCGA+GGG - chr5_4:24933455-24933474 None:intergenic 35.0%
!!! ATCCTAAGCTTTTTTGTTCG+AGG - chr5_4:24933456-24933475 None:intergenic 35.0%
TCGAACAAAAAAGCTTAGGA+TGG + chr5_4:24933455-24933474 Msa0845640:CDS 35.0%
TGCCTTACACAATGATATAG+AGG + chr5_4:24933488-24933507 Msa0845640:CDS 35.0%
GCCTTACACAATGATATAGA+GGG + chr5_4:24933489-24933508 Msa0845640:CDS 35.0%
TCCCTCTATATCATTGTGTA+AGG - chr5_4:24933493-24933512 None:intergenic 35.0%
!! AAACTCTATCTTTGGAATGG+AGG - chr5_4:24933520-24933539 None:intergenic 35.0%
!!! AAGTTTTTTGGTGTTGCAGT+TGG - chr5_4:24933649-24933668 None:intergenic 35.0%
AACACCAAAAAACTTAGTCC+TGG + chr5_4:24933654-24933673 Msa0845640:CDS 35.0%
!!! TGAACCAGGACTAAGTTTTT+TGG - chr5_4:24933661-24933680 None:intergenic 35.0%
TACACGATTCAGATATCAAG+GGG + chr5_4:24933724-24933743 Msa0845640:CDS 35.0%
! ACCGTATTGATCCAAAAATC+TGG + chr5_4:24931707-24931726 Msa0845640:CDS 35.0%
!! GCCAGATTTTTGGATCAATA+CGG - chr5_4:24931711-24931730 None:intergenic 35.0%
CATGTTTACTACTTCCCATT+AGG + chr5_4:24931775-24931794 Msa0845640:CDS 35.0%
! ATTAATTTTGCGCATTCGCT+AGG - chr5_4:24932078-24932097 None:intergenic 35.0%
ATGAAAAAATCAGCTGGAAC+TGG + chr5_4:24932282-24932301 Msa0845640:CDS 35.0%
AATTAATGCTAAGGTTGTGG+AGG + chr5_4:24932470-24932489 Msa0845640:CDS 35.0%
CTATTTGTCACAATTCAAGG+AGG - chr5_4:24932914-24932933 None:intergenic 35.0%
GCACTATTTGTCACAATTCA+AGG - chr5_4:24932917-24932936 None:intergenic 35.0%
!!! TCCTAAGCTTTTTTGTTCGA+GGG - chr5_4:24933455-24933474 None:intergenic 35.0%
!!! ATCCTAAGCTTTTTTGTTCG+AGG - chr5_4:24933456-24933475 None:intergenic 35.0%
TCGAACAAAAAAGCTTAGGA+TGG + chr5_4:24933455-24933474 Msa0845640:CDS 35.0%
TGCCTTACACAATGATATAG+AGG + chr5_4:24933488-24933507 Msa0845640:CDS 35.0%
GCCTTACACAATGATATAGA+GGG + chr5_4:24933489-24933508 Msa0845640:CDS 35.0%
TCCCTCTATATCATTGTGTA+AGG - chr5_4:24933493-24933512 None:intergenic 35.0%
!! AAACTCTATCTTTGGAATGG+AGG - chr5_4:24933520-24933539 None:intergenic 35.0%
!!! AAGTTTTTTGGTGTTGCAGT+TGG - chr5_4:24933649-24933668 None:intergenic 35.0%
AACACCAAAAAACTTAGTCC+TGG + chr5_4:24933654-24933673 Msa0845640:CDS 35.0%
!!! TGAACCAGGACTAAGTTTTT+TGG - chr5_4:24933661-24933680 None:intergenic 35.0%
TACACGATTCAGATATCAAG+GGG + chr5_4:24933724-24933743 Msa0845640:CDS 35.0%
! TGTGTTCTAAGTGCCCTAAT+GGG - chr5_4:24931792-24931811 None:intergenic 40.0%
! ATGTGTTCTAAGTGCCCTAA+TGG - chr5_4:24931793-24931812 None:intergenic 40.0%
TAGTTTGACGAAGACTTCGT+CGG - chr5_4:24931917-24931936 None:intergenic 40.0%
ACTCCGTCTGATGCTAATAA+CGG + chr5_4:24932036-24932055 Msa0845640:CDS 40.0%
CTCTCAATCACTGACATTCA+CGG + chr5_4:24932141-24932160 Msa0845640:CDS 40.0%
GTTGACGAGAAGAAACTGAT+TGG + chr5_4:24932240-24932259 Msa0845640:CDS 40.0%
AACAGAAAAATCGGTTACCG+AGG + chr5_4:24932371-24932390 Msa0845640:CDS 40.0%
GTGTATTATCCTACTGCTGA+AGG + chr5_4:24932432-24932451 Msa0845640:CDS 40.0%
ATTATCCTACTGCTGAAGGT+TGG + chr5_4:24932436-24932455 Msa0845640:CDS 40.0%
TGGATGTAGTGCATGTATGT+TGG - chr5_4:24933427-24933446 None:intergenic 40.0%
!!! TTTTTTGTTCGAGGGAACTG+TGG - chr5_4:24933447-24933466 None:intergenic 40.0%
TCCCTCGAACAAAAAAGCTT+AGG + chr5_4:24933451-24933470 Msa0845640:CDS 40.0%
TCGTGTAAATCACTTCCAAC+AGG - chr5_4:24933711-24933730 None:intergenic 40.0%
ACACGATTCAGATATCAAGG+GGG + chr5_4:24933725-24933744 Msa0845640:CDS 40.0%
! TGTGTTCTAAGTGCCCTAAT+GGG - chr5_4:24931792-24931811 None:intergenic 40.0%
! ATGTGTTCTAAGTGCCCTAA+TGG - chr5_4:24931793-24931812 None:intergenic 40.0%
TAGTTTGACGAAGACTTCGT+CGG - chr5_4:24931917-24931936 None:intergenic 40.0%
ACTCCGTCTGATGCTAATAA+CGG + chr5_4:24932036-24932055 Msa0845640:CDS 40.0%
CTCTCAATCACTGACATTCA+CGG + chr5_4:24932141-24932160 Msa0845640:CDS 40.0%
GTTGACGAGAAGAAACTGAT+TGG + chr5_4:24932240-24932259 Msa0845640:CDS 40.0%
AACAGAAAAATCGGTTACCG+AGG + chr5_4:24932371-24932390 Msa0845640:CDS 40.0%
GTGTATTATCCTACTGCTGA+AGG + chr5_4:24932432-24932451 Msa0845640:CDS 40.0%
ATTATCCTACTGCTGAAGGT+TGG + chr5_4:24932436-24932455 Msa0845640:CDS 40.0%
TGGATGTAGTGCATGTATGT+TGG - chr5_4:24933427-24933446 None:intergenic 40.0%
!!! TTTTTTGTTCGAGGGAACTG+TGG - chr5_4:24933447-24933466 None:intergenic 40.0%
TCCCTCGAACAAAAAAGCTT+AGG + chr5_4:24933451-24933470 Msa0845640:CDS 40.0%
TCGTGTAAATCACTTCCAAC+AGG - chr5_4:24933711-24933730 None:intergenic 40.0%
ACACGATTCAGATATCAAGG+GGG + chr5_4:24933725-24933744 Msa0845640:CDS 40.0%
! TCAATACGGTTAGGTTGCTG+AGG - chr5_4:24931697-24931716 None:intergenic 45.0%
!! TGGAATTTTAAAGGCAGCCC+CGG - chr5_4:24931743-24931762 None:intergenic 45.0%
! GTTGGTGAAGACGAAGATGA+CGG + chr5_4:24931982-24932001 Msa0845640:CDS 45.0%
TTGGTGAAGACGAAGATGAC+GGG + chr5_4:24931983-24932002 Msa0845640:CDS 45.0%
! CGGAGTTAGAGTTTTTCCAG+AGG - chr5_4:24932022-24932041 None:intergenic 45.0%
CCACCGTTATTAGCATCAGA+CGG - chr5_4:24932042-24932061 None:intergenic 45.0%
! TTTTGCGCATTCGCTAGGTA+CGG - chr5_4:24932073-24932092 None:intergenic 45.0%
GTGATTGAGAGTTCCTGAGA+CGG - chr5_4:24932132-24932151 None:intergenic 45.0%
CTGACATTCACGGCAAAGAA+TGG + chr5_4:24932151-24932170 Msa0845640:CDS 45.0%
AACAAACTCACTCCAGTTGG+TGG - chr5_4:24932223-24932242 None:intergenic 45.0%
GTCAACAAACTCACTCCAGT+TGG - chr5_4:24932226-24932245 None:intergenic 45.0%
GACGAGAAGAAACTGATTGG+TGG + chr5_4:24932243-24932262 Msa0845640:CDS 45.0%
!! ACTGATTGGTGGTGATTCCT+TGG + chr5_4:24932254-24932273 Msa0845640:CDS 45.0%
GATTCCAACGGAGATCGTTA+CGG - chr5_4:24932319-24932338 None:intergenic 45.0%
AGAATTGGCGGAGAAGAACA+TGG + chr5_4:24932398-24932417 Msa0845640:CDS 45.0%
TATCTGCTCCTAATCGTCCA+TGG + chr5_4:24932598-24932617 Msa0845640:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr5_4:24932897-24932916 None:intergenic 45.0%
TGTCACAATTCAAGGAGGTG+TGG - chr5_4:24932909-24932928 None:intergenic 45.0%
GAAATAAGCTCAACCTCCCA+AGG - chr5_4:24933405-24933424 None:intergenic 45.0%
TGCTTTGCTCGATGACATAC+AGG + chr5_4:24933587-24933606 Msa0845640:CDS 45.0%
GCTTTGCTCGATGACATACA+GGG + chr5_4:24933588-24933607 Msa0845640:CDS 45.0%
TGCGGAAAAAAGATTGTGCC+TGG - chr5_4:24933616-24933635 None:intergenic 45.0%
!! GCAGTTGGAAGAAGTTGATG+CGG - chr5_4:24933634-24933653 None:intergenic 45.0%
! TCAATACGGTTAGGTTGCTG+AGG - chr5_4:24931697-24931716 None:intergenic 45.0%
!! TGGAATTTTAAAGGCAGCCC+CGG - chr5_4:24931743-24931762 None:intergenic 45.0%
! GTTGGTGAAGACGAAGATGA+CGG + chr5_4:24931982-24932001 Msa0845640:CDS 45.0%
TTGGTGAAGACGAAGATGAC+GGG + chr5_4:24931983-24932002 Msa0845640:CDS 45.0%
! CGGAGTTAGAGTTTTTCCAG+AGG - chr5_4:24932022-24932041 None:intergenic 45.0%
CCACCGTTATTAGCATCAGA+CGG - chr5_4:24932042-24932061 None:intergenic 45.0%
! TTTTGCGCATTCGCTAGGTA+CGG - chr5_4:24932073-24932092 None:intergenic 45.0%
GTGATTGAGAGTTCCTGAGA+CGG - chr5_4:24932132-24932151 None:intergenic 45.0%
CTGACATTCACGGCAAAGAA+TGG + chr5_4:24932151-24932170 Msa0845640:CDS 45.0%
AACAAACTCACTCCAGTTGG+TGG - chr5_4:24932223-24932242 None:intergenic 45.0%
GTCAACAAACTCACTCCAGT+TGG - chr5_4:24932226-24932245 None:intergenic 45.0%
GACGAGAAGAAACTGATTGG+TGG + chr5_4:24932243-24932262 Msa0845640:CDS 45.0%
!! ACTGATTGGTGGTGATTCCT+TGG + chr5_4:24932254-24932273 Msa0845640:CDS 45.0%
GATTCCAACGGAGATCGTTA+CGG - chr5_4:24932319-24932338 None:intergenic 45.0%
AGAATTGGCGGAGAAGAACA+TGG + chr5_4:24932398-24932417 Msa0845640:CDS 45.0%
TATCTGCTCCTAATCGTCCA+TGG + chr5_4:24932598-24932617 Msa0845640:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr5_4:24932897-24932916 None:intergenic 45.0%
TGTCACAATTCAAGGAGGTG+TGG - chr5_4:24932909-24932928 None:intergenic 45.0%
GAAATAAGCTCAACCTCCCA+AGG - chr5_4:24933405-24933424 None:intergenic 45.0%
TGCTTTGCTCGATGACATAC+AGG + chr5_4:24933587-24933606 Msa0845640:CDS 45.0%
GCTTTGCTCGATGACATACA+GGG + chr5_4:24933588-24933607 Msa0845640:CDS 45.0%
TGCGGAAAAAAGATTGTGCC+TGG - chr5_4:24933616-24933635 None:intergenic 45.0%
!! GCAGTTGGAAGAAGTTGATG+CGG - chr5_4:24933634-24933653 None:intergenic 45.0%
GAATGAATGGACGGGAACCA+TGG - chr5_4:24931852-24931871 None:intergenic 50.0%
TCTTCGTCTTCACCAACCTC+AGG - chr5_4:24931979-24931998 None:intergenic 50.0%
TGGTGAAGACGAAGATGACG+GGG + chr5_4:24931984-24932003 Msa0845640:CDS 50.0%
CCGTCTGATGCTAATAACGG+TGG + chr5_4:24932039-24932058 Msa0845640:CDS 50.0%
ATTCCCACTACTTGACCTCC+AGG + chr5_4:24932098-24932117 Msa0845640:CDS 50.0%
! GAGTTCCTGAGACGGCTTTT+CGG - chr5_4:24932124-24932143 None:intergenic 50.0%
GGTTACCGAGGCTGTAGAAT+TGG + chr5_4:24932383-24932402 Msa0845640:CDS 50.0%
TACCGAGGCTGTAGAATTGG+CGG + chr5_4:24932386-24932405 Msa0845640:CDS 50.0%
TCACACCAACCTTCAGCAGT+AGG - chr5_4:24932444-24932463 None:intergenic 50.0%
TATACCTCAAGCATGCGCCA+TGG - chr5_4:24932618-24932637 None:intergenic 50.0%
TGAACCTAAAGTCTCGCAGC+TGG + chr5_4:24933362-24933381 Msa0845640:CDS 50.0%
TTCCAGAGCGAGTCAATCCT+TGG + chr5_4:24933385-24933404 Msa0845640:CDS 50.0%
TCCAGAGCGAGTCAATCCTT+GGG + chr5_4:24933386-24933405 Msa0845640:CDS 50.0%
GGTCAGATCATACGTCCTGT+TGG + chr5_4:24933693-24933712 Msa0845640:CDS 50.0%
CGATTCAGATATCAAGGGGG+AGG + chr5_4:24933728-24933747 Msa0845640:CDS 50.0%
TCAGATATCAAGGGGGAGGA+TGG + chr5_4:24933732-24933751 Msa0845640:CDS 50.0%
GAATGAATGGACGGGAACCA+TGG - chr5_4:24931852-24931871 None:intergenic 50.0%
TCTTCGTCTTCACCAACCTC+AGG - chr5_4:24931979-24931998 None:intergenic 50.0%
TGGTGAAGACGAAGATGACG+GGG + chr5_4:24931984-24932003 Msa0845640:CDS 50.0%
CCGTCTGATGCTAATAACGG+TGG + chr5_4:24932039-24932058 Msa0845640:CDS 50.0%
ATTCCCACTACTTGACCTCC+AGG + chr5_4:24932098-24932117 Msa0845640:CDS 50.0%
! GAGTTCCTGAGACGGCTTTT+CGG - chr5_4:24932124-24932143 None:intergenic 50.0%
GGTTACCGAGGCTGTAGAAT+TGG + chr5_4:24932383-24932402 Msa0845640:CDS 50.0%
TACCGAGGCTGTAGAATTGG+CGG + chr5_4:24932386-24932405 Msa0845640:CDS 50.0%
TCACACCAACCTTCAGCAGT+AGG - chr5_4:24932444-24932463 None:intergenic 50.0%
TATACCTCAAGCATGCGCCA+TGG - chr5_4:24932618-24932637 None:intergenic 50.0%
TGAACCTAAAGTCTCGCAGC+TGG + chr5_4:24933362-24933381 Msa0845640:CDS 50.0%
TTCCAGAGCGAGTCAATCCT+TGG + chr5_4:24933385-24933404 Msa0845640:CDS 50.0%
TCCAGAGCGAGTCAATCCTT+GGG + chr5_4:24933386-24933405 Msa0845640:CDS 50.0%
GGTCAGATCATACGTCCTGT+TGG + chr5_4:24933693-24933712 Msa0845640:CDS 50.0%
CGATTCAGATATCAAGGGGG+AGG + chr5_4:24933728-24933747 Msa0845640:CDS 50.0%
TCAGATATCAAGGGGGAGGA+TGG + chr5_4:24933732-24933751 Msa0845640:CDS 50.0%
! GCGCAGCACTGCCAGATTTT+TGG - chr5_4:24931721-24931740 None:intergenic 55.0%
AAAATCTGGCAGTGCTGCGC+CGG + chr5_4:24931721-24931740 Msa0845640:CDS 55.0%
AGTGTGCTAGGGTTTGGGGA+TGG - chr5_4:24931820-24931839 None:intergenic 55.0%
! GGAGAGTGTGCTAGGGTTTG+GGG - chr5_4:24931824-24931843 None:intergenic 55.0%
! GGGAGAGTGTGCTAGGGTTT+GGG - chr5_4:24931825-24931844 None:intergenic 55.0%
! AGGGAGAGTGTGCTAGGGTT+TGG - chr5_4:24931826-24931845 None:intergenic 55.0%
! GGAGAAGGGAGAGTGTGCTA+GGG - chr5_4:24931831-24931850 None:intergenic 55.0%
! TGGAGAAGGGAGAGTGTGCT+AGG - chr5_4:24931832-24931851 None:intergenic 55.0%
AGCACACTCTCCCTTCTCCA+TGG + chr5_4:24931832-24931851 Msa0845640:CDS 55.0%
TGGACGGGAACCATGGAGAA+GGG - chr5_4:24931845-24931864 None:intergenic 55.0%
ATGGACGGGAACCATGGAGA+AGG - chr5_4:24931846-24931865 None:intergenic 55.0%
GGTGCAGGGAATGAATGGAC+GGG - chr5_4:24931860-24931879 None:intergenic 55.0%
CGGTGCAGGGAATGAATGGA+CGG - chr5_4:24931861-24931880 None:intergenic 55.0%
GAGACGGTGCAGGGAATGAA+TGG - chr5_4:24931865-24931884 None:intergenic 55.0%
GAGTAGATCAACCGCGGAGA+CGG - chr5_4:24931881-24931900 None:intergenic 55.0%
GTCAGCGAGTAGATCAACCG+CGG - chr5_4:24931887-24931906 None:intergenic 55.0%
TGGACACGGTCGTTAGTGAC+GGG - chr5_4:24931949-24931968 None:intergenic 55.0%
GTGGACACGGTCGTTAGTGA+CGG - chr5_4:24931950-24931969 None:intergenic 55.0%
TCGTCTTCACCAACCTCAGG+AGG - chr5_4:24931976-24931995 None:intergenic 55.0%
!! AGACGAAGATGACGGGGTTG+AGG + chr5_4:24931990-24932009 Msa0845640:CDS 55.0%
! GGGGTTGAGGTTGTTTCCTC+TGG + chr5_4:24932003-24932022 Msa0845640:CDS 55.0%
! GTGGTGATCAGGTGTCGCAA+GGG - chr5_4:24932204-24932223 None:intergenic 55.0%
GACACCTGATCACCACCAAC+TGG + chr5_4:24932208-24932227 Msa0845640:CDS 55.0%
!! CACTCCAGTTGGTGGTGATC+AGG - chr5_4:24932215-24932234 None:intergenic 55.0%
ACTGCCGTAACGATCTCCGT+TGG + chr5_4:24932312-24932331 Msa0845640:CDS 55.0%
TGGCAGCACCAAACTTCTGC+CGG - chr5_4:24932344-24932363 None:intergenic 55.0%
CTCCGCCAATTCTACAGCCT+CGG - chr5_4:24932391-24932410 None:intergenic 55.0%
AGCATGCGCCATGGACGATT+AGG - chr5_4:24932609-24932628 None:intergenic 55.0%
GGAACCAGCTGCGAGACTTT+AGG - chr5_4:24933369-24933388 None:intergenic 55.0%
!! TCCCAAGGATTGACTCGCTC+TGG - chr5_4:24933390-24933409 None:intergenic 55.0%
AGAGCGAGTCAATCCTTGGG+AGG + chr5_4:24933389-24933408 Msa0845640:CDS 55.0%
TCGATGACATACAGGGAGCC+AGG + chr5_4:24933595-24933614 Msa0845640:CDS 55.0%
! GCGCAGCACTGCCAGATTTT+TGG - chr5_4:24931721-24931740 None:intergenic 55.0%
AAAATCTGGCAGTGCTGCGC+CGG + chr5_4:24931721-24931740 Msa0845640:CDS 55.0%
AGTGTGCTAGGGTTTGGGGA+TGG - chr5_4:24931820-24931839 None:intergenic 55.0%
! GGAGAGTGTGCTAGGGTTTG+GGG - chr5_4:24931824-24931843 None:intergenic 55.0%
! GGGAGAGTGTGCTAGGGTTT+GGG - chr5_4:24931825-24931844 None:intergenic 55.0%
! AGGGAGAGTGTGCTAGGGTT+TGG - chr5_4:24931826-24931845 None:intergenic 55.0%
! GGAGAAGGGAGAGTGTGCTA+GGG - chr5_4:24931831-24931850 None:intergenic 55.0%
! TGGAGAAGGGAGAGTGTGCT+AGG - chr5_4:24931832-24931851 None:intergenic 55.0%
AGCACACTCTCCCTTCTCCA+TGG + chr5_4:24931832-24931851 Msa0845640:CDS 55.0%
TGGACGGGAACCATGGAGAA+GGG - chr5_4:24931845-24931864 None:intergenic 55.0%
ATGGACGGGAACCATGGAGA+AGG - chr5_4:24931846-24931865 None:intergenic 55.0%
GGTGCAGGGAATGAATGGAC+GGG - chr5_4:24931860-24931879 None:intergenic 55.0%
CGGTGCAGGGAATGAATGGA+CGG - chr5_4:24931861-24931880 None:intergenic 55.0%
GAGACGGTGCAGGGAATGAA+TGG - chr5_4:24931865-24931884 None:intergenic 55.0%
GAGTAGATCAACCGCGGAGA+CGG - chr5_4:24931881-24931900 None:intergenic 55.0%
GTCAGCGAGTAGATCAACCG+CGG - chr5_4:24931887-24931906 None:intergenic 55.0%
TGGACACGGTCGTTAGTGAC+GGG - chr5_4:24931949-24931968 None:intergenic 55.0%
GTGGACACGGTCGTTAGTGA+CGG - chr5_4:24931950-24931969 None:intergenic 55.0%
TCGTCTTCACCAACCTCAGG+AGG - chr5_4:24931976-24931995 None:intergenic 55.0%
!! AGACGAAGATGACGGGGTTG+AGG + chr5_4:24931990-24932009 Msa0845640:CDS 55.0%
! GGGGTTGAGGTTGTTTCCTC+TGG + chr5_4:24932003-24932022 Msa0845640:CDS 55.0%
! GTGGTGATCAGGTGTCGCAA+GGG - chr5_4:24932204-24932223 None:intergenic 55.0%
GACACCTGATCACCACCAAC+TGG + chr5_4:24932208-24932227 Msa0845640:CDS 55.0%
!! CACTCCAGTTGGTGGTGATC+AGG - chr5_4:24932215-24932234 None:intergenic 55.0%
ACTGCCGTAACGATCTCCGT+TGG + chr5_4:24932312-24932331 Msa0845640:CDS 55.0%
TGGCAGCACCAAACTTCTGC+CGG - chr5_4:24932344-24932363 None:intergenic 55.0%
CTCCGCCAATTCTACAGCCT+CGG - chr5_4:24932391-24932410 None:intergenic 55.0%
AGCATGCGCCATGGACGATT+AGG - chr5_4:24932609-24932628 None:intergenic 55.0%
GGAACCAGCTGCGAGACTTT+AGG - chr5_4:24933369-24933388 None:intergenic 55.0%
!! TCCCAAGGATTGACTCGCTC+TGG - chr5_4:24933390-24933409 None:intergenic 55.0%
AGAGCGAGTCAATCCTTGGG+AGG + chr5_4:24933389-24933408 Msa0845640:CDS 55.0%
TCGATGACATACAGGGAGCC+AGG + chr5_4:24933595-24933614 Msa0845640:CDS 55.0%
AAATCTGGCAGTGCTGCGCC+GGG + chr5_4:24931722-24931741 Msa0845640:CDS 60.0%
! GGTCGTTAGTGACGGGAGTG+AGG - chr5_4:24931942-24931961 None:intergenic 60.0%
CCTCAGGAGGTTCGTGGACA+CGG - chr5_4:24931963-24931982 None:intergenic 60.0%
GTCCACGAACCTCCTGAGGT+TGG + chr5_4:24931964-24931983 Msa0845640:CDS 60.0%
CACCAACCTCAGGAGGTTCG+TGG - chr5_4:24931969-24931988 None:intergenic 60.0%
CGGCCTGGAGGTCAAGTAGT+GGG - chr5_4:24932104-24932123 None:intergenic 60.0%
TCGGCCTGGAGGTCAAGTAG+TGG - chr5_4:24932105-24932124 None:intergenic 60.0%
AAGCTTCGCCACGTCTACCG+TGG + chr5_4:24932174-24932193 Msa0845640:CDS 60.0%
AGCTTCGCCACGTCTACCGT+GGG + chr5_4:24932175-24932194 Msa0845640:CDS 60.0%
! GGTGGTGATCAGGTGTCGCA+AGG - chr5_4:24932205-24932224 None:intergenic 60.0%
CGATCTCCGTTGGAATCCGC+CGG + chr5_4:24932322-24932341 Msa0845640:CDS 60.0%
! CTTCTGCCGGCGGATTCCAA+CGG - chr5_4:24932331-24932350 None:intergenic 60.0%
GGAATCCGCCGGCAGAAGTT+TGG + chr5_4:24932333-24932352 Msa0845640:CDS 60.0%
CAGCACCAAACTTCTGCCGG+CGG - chr5_4:24932341-24932360 None:intergenic 60.0%
TCGTCCATGGCGCATGCTTG+AGG + chr5_4:24932611-24932630 Msa0845640:CDS 60.0%
AAATCTGGCAGTGCTGCGCC+GGG + chr5_4:24931722-24931741 Msa0845640:CDS 60.0%
! GGTCGTTAGTGACGGGAGTG+AGG - chr5_4:24931942-24931961 None:intergenic 60.0%
CCTCAGGAGGTTCGTGGACA+CGG - chr5_4:24931963-24931982 None:intergenic 60.0%
GTCCACGAACCTCCTGAGGT+TGG + chr5_4:24931964-24931983 Msa0845640:CDS 60.0%
CACCAACCTCAGGAGGTTCG+TGG - chr5_4:24931969-24931988 None:intergenic 60.0%
CGGCCTGGAGGTCAAGTAGT+GGG - chr5_4:24932104-24932123 None:intergenic 60.0%
TCGGCCTGGAGGTCAAGTAG+TGG - chr5_4:24932105-24932124 None:intergenic 60.0%
AAGCTTCGCCACGTCTACCG+TGG + chr5_4:24932174-24932193 Msa0845640:CDS 60.0%
AGCTTCGCCACGTCTACCGT+GGG + chr5_4:24932175-24932194 Msa0845640:CDS 60.0%
! GGTGGTGATCAGGTGTCGCA+AGG - chr5_4:24932205-24932224 None:intergenic 60.0%
CGATCTCCGTTGGAATCCGC+CGG + chr5_4:24932322-24932341 Msa0845640:CDS 60.0%
! CTTCTGCCGGCGGATTCCAA+CGG - chr5_4:24932331-24932350 None:intergenic 60.0%
GGAATCCGCCGGCAGAAGTT+TGG + chr5_4:24932333-24932352 Msa0845640:CDS 60.0%
CAGCACCAAACTTCTGCCGG+CGG - chr5_4:24932341-24932360 None:intergenic 60.0%
TCGTCCATGGCGCATGCTTG+AGG + chr5_4:24932611-24932630 Msa0845640:CDS 60.0%
AATCTGGCAGTGCTGCGCCG+GGG + chr5_4:24931723-24931742 Msa0845640:CDS 65.0%
CATTCCCTGCACCGTCTCCG+CGG + chr5_4:24931867-24931886 Msa0845640:CDS 65.0%
TCAACCGCGGAGACGGTGCA+GGG - chr5_4:24931874-24931893 None:intergenic 65.0%
ATCAACCGCGGAGACGGTGC+AGG - chr5_4:24931875-24931894 None:intergenic 65.0%
CCGTGTCCACGAACCTCCTG+AGG + chr5_4:24931960-24931979 Msa0845640:CDS 65.0%
! GAGACGGCTTTTCGGCCTGG+AGG - chr5_4:24932116-24932135 None:intergenic 65.0%
! CCTGAGACGGCTTTTCGGCC+TGG - chr5_4:24932119-24932138 None:intergenic 65.0%
CCAGGCCGAAAAGCCGTCTC+AGG + chr5_4:24932116-24932135 Msa0845640:CDS 65.0%
AGGGAGTCCCACGGTAGACG+TGG - chr5_4:24932185-24932204 None:intergenic 65.0%
! GGTGTCGCAAGGGAGTCCCA+CGG - chr5_4:24932194-24932213 None:intergenic 65.0%
AAGGGGGAGGATGGCCGTAG+AGG + chr5_4:24933741-24933760 Msa0845640:CDS 65.0%
AATCTGGCAGTGCTGCGCCG+GGG + chr5_4:24931723-24931742 Msa0845640:CDS 65.0%
CATTCCCTGCACCGTCTCCG+CGG + chr5_4:24931867-24931886 Msa0845640:CDS 65.0%
TCAACCGCGGAGACGGTGCA+GGG - chr5_4:24931874-24931893 None:intergenic 65.0%
ATCAACCGCGGAGACGGTGC+AGG - chr5_4:24931875-24931894 None:intergenic 65.0%
CCGTGTCCACGAACCTCCTG+AGG + chr5_4:24931960-24931979 Msa0845640:CDS 65.0%
! GAGACGGCTTTTCGGCCTGG+AGG - chr5_4:24932116-24932135 None:intergenic 65.0%
! CCTGAGACGGCTTTTCGGCC+TGG - chr5_4:24932119-24932138 None:intergenic 65.0%
CCAGGCCGAAAAGCCGTCTC+AGG + chr5_4:24932116-24932135 Msa0845640:CDS 65.0%
AGGGAGTCCCACGGTAGACG+TGG - chr5_4:24932185-24932204 None:intergenic 65.0%
! GGTGTCGCAAGGGAGTCCCA+CGG - chr5_4:24932194-24932213 None:intergenic 65.0%
AAGGGGGAGGATGGCCGTAG+AGG + chr5_4:24933741-24933760 Msa0845640:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 24931688 24933788 24931688 ID=Msa0845640;Name=Msa0845640
chr5_4 mRNA 24931688 24933788 24931688 ID=Msa0845640-mRNA-1;Parent=Msa0845640;Name=Msa0845640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|460
chr5_4 exon 24931688 24932632 24931688 ID=Msa0845640-mRNA-1:exon:9978;Parent=Msa0845640-mRNA-1
chr5_4 exon 24933351 24933788 24933351 ID=Msa0845640-mRNA-1:exon:9979;Parent=Msa0845640-mRNA-1
chr5_4 CDS 24931688 24932632 24931688 ID=Msa0845640-mRNA-1:cds;Parent=Msa0845640-mRNA-1
chr5_4 CDS 24933351 24933788 24933351 ID=Msa0845640-mRNA-1:cds;Parent=Msa0845640-mRNA-1
Gene Sequence

>Msa0845640

ATGTCTCCTCAGCAACCTAACCGTATTGATCCAAAAATCTGGCAGTGCTGCGCCGGGGCTGCCTTTAAAATTCCAAAACTACATTCTCATGTTTACTACTTCCCATTAGGGCACTTAGAACACATATGTCCATCCCCAAACCCTAGCACACTCTCCCTTCTCCATGGTTCCCGTCCATTCATTCCCTGCACCGTCTCCGCGGTTGATCTACTCGCTGACTCTTGTACCGACGAAGTCTTCGTCAAACTACTCCTCACTCCCGTCACTAACGACCGTGTCCACGAACCTCCTGAGGTTGGTGAAGACGAAGATGACGGGGTTGAGGTTGTTTCCTCTGGAAAAACTCTAACTCCGTCTGATGCTAATAACGGTGGTGCATTCTCCGTACCTAGCGAATGCGCAAAATTAATATTCCCACTACTTGACCTCCAGGCCGAAAAGCCGTCTCAGGAACTCTCAATCACTGACATTCACGGCAAAGAATGGAAGCTTCGCCACGTCTACCGTGGGACTCCCTTGCGACACCTGATCACCACCAACTGGAGTGAGTTTGTTGACGAGAAGAAACTGATTGGTGGTGATTCCTTGGTTTTCATGAAAAAATCAGCTGGAACTGGAACTGAAACTGCCGTAACGATCTCCGTTGGAATCCGCCGGCAGAAGTTTGGTGCTGCCACTAAGATAACAGAAAAATCGGTTACCGAGGCTGTAGAATTGGCGGAGAAGAACATGGCTTTCGAAGTTGTGTATTATCCTACTGCTGAAGGTTGGTGTGATTTTGTAATTAATGCTAAGGTTGTGGAGGAAGCCATTAAGATTAAATGGAATCCTGGATTGAGAATTAAACTTTCTTTGAAGAAAGACAATTCTTCAAAGAGATGCTCAAATTTTGAGGGAACAATATCTGCTCTATCTGCTCCTAATCGTCCATGGCGCATGCTTGAGGTTAATTGGGATGAACCTAAAGTCTCGCAGCTGGTTCCAGAGCGAGTCAATCCTTGGGAGGTTGAGCTTATTTCCAACATACATGCACTACATCCACAGTTCCCTCGAACAAAAAAGCTTAGGATGGCTAAAGATTCTGCCTTACACAATGATATAGAGGGAGACTCCTCCATTCCAAAGATAGAGTTTCATTCTTCAAGGACGAGATCCTTCAATGAAACATCGTTGAATGGCGATGCTTTGCTCGATGACATACAGGGAGCCAGGCACAATCTTTTTTCCGCATCAACTTCTTCCAACTGCAACACCAAAAAACTTAGTCCTGGTTCAATTATGTTATTTGGTCAGATCATACGTCCTGTTGGAAGTGATTTACACGATTCAGATATCAAGGGGGAGGATGGCCGTAGAGGATGCAATGAAAATAGTCTTGTGTAG
Protein sequence

>Msa0845640

MSPQQPNRIDPKIWQCCAGAAFKIPKLHSHVYYFPLGHLEHICPSPNPSTLSLLHGSRPFIPCTVSAVDLLADSCTDEVFVKLLLTPVTNDRVHEPPEVGEDEDDGVEVVSSGKTLTPSDANNGGAFSVPSECAKLIFPLLDLQAEKPSQELSITDIHGKEWKLRHVYRGTPLRHLITTNWSEFVDEKKLIGGDSLVFMKKSAGTGTETAVTISVGIRRQKFGAATKITEKSVTEAVELAEKNMAFEVVYYPTAEGWCDFVINAKVVEEAIKIKWNPGLRIKLSLKKDNSSKRCSNFEGTISALSAPNRPWRMLEVNWDEPKVSQLVPERVNPWEVELISNIHALHPQFPRTKKLRMAKDSALHNDIEGDSSIPKIEFHSSRTRSFNETSLNGDALLDDIQGARHNLFSASTSSNCNTKKLSPGSIMLFGQIIRPVGSDLHDSDIKGEDGRRGCNENSLV*