Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845890 | GAU51660.1 | 64.297 | 647 | 118 | 10 | 52 | 590 | 14 | 655 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845890 | sp|Q9SZL8|FRS5_ARATH | 27.344 | 256 | 170 | 6 | 58 | 310 | 118 | 360 | 2.52e-22 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845890 | A0A2Z6PJC0 | 64.297 | 647 | 118 | 10 | 52 | 590 | 14 | 655 | 0.0 | 775 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0845890 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845890 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 424 | 604 | 1 | 184 | 6.19e-104 | 312 |
| Msa0845890 | MtrunA17_Chr6g0475591 | 90.411 | 73 | 7 | 0 | 162 | 234 | 1 | 73 | 3.22e-40 | 141 |
| Msa0845890 | MtrunA17_Chr7g0258861 | 31.579 | 285 | 164 | 7 | 46 | 316 | 42 | 309 | 9.12e-34 | 130 |
| Msa0845890 | MtrunA17_Chr1g0172971 | 60.684 | 117 | 19 | 2 | 1 | 90 | 1 | 117 | 7.22e-32 | 130 |
| Msa0845890 | MtrunA17_Chr2g0324011 | 31.203 | 266 | 160 | 7 | 48 | 305 | 43 | 293 | 2.46e-28 | 119 |
| Msa0845890 | MtrunA17_Chr3g0082121 | 30.622 | 209 | 133 | 3 | 94 | 299 | 110 | 309 | 9.31e-25 | 109 |
| Msa0845890 | MtrunA17_Chr3g0082121 | 26.957 | 230 | 145 | 8 | 306 | 533 | 447 | 655 | 1.53e-12 | 70.5 |
| Msa0845890 | MtrunA17_Chr1g0202341 | 29.811 | 265 | 164 | 7 | 53 | 299 | 64 | 324 | 2.27e-24 | 108 |
| Msa0845890 | MtrunA17_Chr1g0164591 | 30.348 | 201 | 128 | 3 | 107 | 304 | 3 | 194 | 3.69e-23 | 100 |
| Msa0845890 | MtrunA17_Chr5g0448761 | 29.245 | 212 | 134 | 5 | 58 | 266 | 105 | 303 | 5.42e-22 | 100 |
| Msa0845890 | MtrunA17_Chr8g0363841 | 27.273 | 275 | 171 | 10 | 38 | 304 | 43 | 296 | 6.22e-19 | 90.9 |
| Msa0845890 | MtrunA17_Chr1g0203721 | 25.822 | 213 | 141 | 3 | 58 | 268 | 108 | 305 | 1.98e-18 | 89.7 |
| Msa0845890 | MtrunA17_Chr1g0203721 | 23.373 | 338 | 196 | 12 | 251 | 545 | 394 | 711 | 3.68e-12 | 69.7 |
| Msa0845890 | MtrunA17_Chr2g0296781 | 28.095 | 210 | 142 | 5 | 95 | 299 | 61 | 266 | 8.41e-18 | 87.4 |
| Msa0845890 | MtrunA17_Chr6g0477261 | 29.747 | 158 | 108 | 2 | 154 | 308 | 7 | 164 | 3.06e-15 | 79.3 |
| Msa0845890 | MtrunA17_Chr5g0441581 | 27.488 | 211 | 140 | 5 | 92 | 299 | 94 | 294 | 1.36e-14 | 77.0 |
| Msa0845890 | MtrunA17_Chr6g0458391 | 25.592 | 211 | 124 | 4 | 58 | 268 | 270 | 447 | 6.59e-14 | 75.1 |
| Msa0845890 | MtrunA17_Chr1g0203051 | 23.810 | 210 | 146 | 2 | 59 | 268 | 124 | 319 | 1.30e-13 | 73.9 |
| Msa0845890 | MtrunA17_Chr2g0287651 | 28.000 | 175 | 118 | 4 | 98 | 268 | 147 | 317 | 7.76e-13 | 71.6 |
| Msa0845890 | MtrunA17_Chr1g0207551 | 30.233 | 129 | 73 | 3 | 399 | 524 | 527 | 641 | 2.44e-12 | 70.1 |
| Msa0845890 | MtrunA17_Chr5g0431001 | 24.444 | 270 | 178 | 9 | 39 | 299 | 93 | 345 | 8.45e-12 | 67.8 |
| Msa0845890 | MtrunA17_Chr3g0080351 | 27.119 | 177 | 102 | 4 | 386 | 558 | 548 | 701 | 1.32e-11 | 67.8 |
| Msa0845890 | MtrunA17_Chr2g0329031 | 27.933 | 179 | 113 | 5 | 94 | 268 | 78 | 244 | 3.46e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845890 | AT4G38180.1 | 27.344 | 256 | 170 | 6 | 58 | 310 | 118 | 360 | 2.56e-23 | 105 |
| Msa0845890 | AT4G15090.1 | 34.074 | 135 | 77 | 3 | 391 | 524 | 538 | 661 | 8.43e-16 | 81.6 |
| Msa0845890 | AT4G15090.5 | 34.074 | 135 | 77 | 3 | 391 | 524 | 538 | 661 | 8.43e-16 | 81.6 |
| Msa0845890 | AT4G15090.3 | 34.074 | 135 | 77 | 3 | 391 | 524 | 538 | 661 | 8.43e-16 | 81.6 |
| Msa0845890 | AT4G15090.2 | 34.074 | 135 | 77 | 3 | 391 | 524 | 538 | 661 | 8.43e-16 | 81.6 |
| Msa0845890 | AT4G15090.4 | 34.074 | 135 | 77 | 3 | 391 | 524 | 538 | 661 | 8.43e-16 | 81.6 |
| Msa0845890 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 397 | 527 | 495 | 615 | 1.59e-12 | 71.2 |
| Msa0845890 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 397 | 527 | 495 | 615 | 1.59e-12 | 71.2 |
| Msa0845890 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 397 | 527 | 495 | 615 | 1.69e-12 | 70.9 |
| Msa0845890 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 397 | 527 | 495 | 615 | 1.75e-12 | 70.9 |
| Msa0845890 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 397 | 527 | 495 | 615 | 1.75e-12 | 70.9 |
| Msa0845890 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 397 | 527 | 438 | 558 | 1.75e-12 | 70.9 |
| Msa0845890 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 397 | 527 | 509 | 629 | 1.99e-12 | 70.9 |
| Msa0845890 | AT5G28530.3 | 24.662 | 296 | 189 | 10 | 21 | 299 | 64 | 342 | 1.60e-11 | 67.8 |
| Msa0845890 | AT5G28530.2 | 24.662 | 296 | 189 | 10 | 21 | 299 | 64 | 342 | 1.60e-11 | 67.8 |
| Msa0845890 | AT5G28530.1 | 24.662 | 296 | 189 | 10 | 21 | 299 | 64 | 342 | 1.71e-11 | 67.8 |
| Msa0845890 | AT2G27110.2 | 32.031 | 128 | 76 | 4 | 398 | 525 | 518 | 634 | 2.00e-11 | 67.8 |
| Msa0845890 | AT2G27110.2 | 24.779 | 226 | 150 | 6 | 101 | 321 | 108 | 318 | 3.50e-11 | 67.0 |
| Msa0845890 | AT2G27110.1 | 32.031 | 128 | 76 | 4 | 398 | 525 | 518 | 634 | 2.00e-11 | 67.8 |
| Msa0845890 | AT2G27110.1 | 24.779 | 226 | 150 | 6 | 101 | 321 | 108 | 318 | 3.50e-11 | 67.0 |
| Msa0845890 | AT2G27110.3 | 32.031 | 128 | 76 | 4 | 398 | 525 | 373 | 489 | 2.08e-11 | 67.4 |
Find 92 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 5_4:+25300014 | None:intergenic |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5_4:-25301937 | Msa0845890:CDS |
| CTTTAGTCATGTCAACATTA+TGG | 0.241572 | 5_4:-25300881 | Msa0845890:CDS |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 5_4:+25300020 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5_4:-25301102 | Msa0845890:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.324740 | 5_4:-25300168 | Msa0845890:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5_4:+25301887 | None:intergenic |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 5_4:+25299952 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 5_4:-25300848 | Msa0845890:CDS |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 5_4:-25300585 | Msa0845890:CDS |
| CTCAATGGTGTTCTTGAGGC+AGG | 0.359373 | 5_4:-25300176 | Msa0845890:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 5_4:+25300292 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5_4:-25301880 | Msa0845890:intron |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 5_4:-25300839 | Msa0845890:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5_4:-25301888 | Msa0845890:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5_4:+25302417 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5_4:-25300028 | Msa0845890:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5_4:+25300038 | None:intergenic |
| GAGGAGTTTCTTCTTTCTAA+AGG | 0.401366 | 5_4:-25300143 | Msa0845890:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 5_4:+25302656 | None:intergenic |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5_4:-25300460 | Msa0845890:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5_4:+25300537 | None:intergenic |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 5_4:-25300502 | Msa0845890:CDS |
| AGAACTGGACTGTCACATAT+TGG | 0.424556 | 5_4:+25302432 | None:intergenic |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5_4:+25300536 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5_4:-25302240 | Msa0845890:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5_4:-25302358 | Msa0845890:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5_4:-25302326 | Msa0845890:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5_4:-25302375 | Msa0845890:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5_4:+25300359 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5_4:-25302492 | Msa0845890:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5_4:-25302210 | Msa0845890:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5_4:-25301048 | Msa0845890:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 5_4:+25302270 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5_4:-25300459 | Msa0845890:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5_4:-25302526 | Msa0845890:CDS |
| ATCCGAGAGTGGACAATTGA+CGG | 0.474201 | 5_4:-25302721 | Msa0845890:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5_4:-25302165 | Msa0845890:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5_4:+25302381 | None:intergenic |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 5_4:-25300067 | Msa0845890:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5_4:-25302097 | Msa0845890:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5_4:-25302532 | Msa0845890:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5_4:-25301101 | Msa0845890:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5_4:-25302084 | Msa0845890:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5_4:-25302178 | Msa0845890:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5_4:+25301992 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 5_4:-25300068 | Msa0845890:CDS |
| AACCGTCAATTGTCCACTCT+CGG | 0.506734 | 5_4:+25302719 | None:intergenic |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5_4:-25300523 | Msa0845890:CDS |
| TCAAACTCATTCAAATCGTA+TGG | 0.512375 | 5_4:-25301020 | Msa0845890:intron |
| ACATTATGGTTCAGAGAATG+AGG | 0.515275 | 5_4:-25300867 | Msa0845890:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5_4:+25300543 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5_4:+25300899 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5_4:-25302322 | Msa0845890:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5_4:-25300522 | Msa0845890:CDS |
| TGAAGACTTAGAAGGCGTAA+AGG | 0.532022 | 5_4:+25300100 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 5_4:-25299962 | Msa0845890:CDS |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 5_4:-25300302 | Msa0845890:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5_4:-25302481 | Msa0845890:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5_4:+25300904 | None:intergenic |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 5_4:-25302656 | Msa0845890:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5_4:-25302480 | Msa0845890:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 5_4:+25302282 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5_4:-25302030 | Msa0845890:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5_4:-25302697 | Msa0845890:CDS |
| TATGAGGAGGACACAACAAA+GGG | 0.566895 | 5_4:-25300691 | Msa0845890:intron |
| GCATCTGAAATATTTCTCAA+TGG | 0.566996 | 5_4:-25300191 | Msa0845890:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5_4:-25302162 | Msa0845890:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5_4:-25300216 | Msa0845890:CDS |
| ATTTCTCAATGGTGTTCTTG+AGG | 0.572762 | 5_4:-25300180 | Msa0845890:CDS |
| TCAATGGTGTTCTTGAGGCA+GGG | 0.576112 | 5_4:-25300175 | Msa0845890:CDS |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.580876 | 5_4:-25300553 | Msa0845890:CDS |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5_4:+25300056 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 5_4:-25299937 | Msa0845890:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5_4:-25302171 | Msa0845890:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.598391 | 5_4:+25300268 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5_4:-25302091 | Msa0845890:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5_4:-25302177 | Msa0845890:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5_4:-25302088 | Msa0845890:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5_4:-25300213 | Msa0845890:CDS |
| ATATCAACTTCATCCGAGAG+TGG | 0.612216 | 5_4:-25302732 | Msa0845890:CDS |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5_4:+25301046 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5_4:-25302157 | Msa0845890:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5_4:+25300538 | None:intergenic |
| TTATGAGGAGGACACAACAA+AGG | 0.633147 | 5_4:-25300692 | Msa0845890:intron |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5_4:-25300866 | Msa0845890:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5_4:-25302323 | Msa0845890:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5_4:+25300317 | None:intergenic |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5_4:+25300441 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5_4:-25300458 | Msa0845890:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5_4:-25300607 | Msa0845890:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5_4:-25300606 | Msa0845890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr5_4:25300132-25300151 | Msa0845890:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr5_4:25300338-25300357 | Msa0845890:CDS | 20.0% |
| !! | TGAAATTTAAATGAATGTTC+TGG | - | chr5_4:25300849-25300868 | Msa0845890:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr5_4:25300931-25300950 | Msa0845890:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr5_4:25300959-25300978 | Msa0845890:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr5_4:25301591-25301610 | Msa0845890:intron | 20.0% |
| !! | TGAATAAATGAAAAGCAATA+TGG | + | chr5_4:25301922-25301941 | None:intergenic | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr5_4:25299967-25299986 | Msa0845890:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr5_4:25300128-25300147 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr5_4:25300138-25300157 | Msa0845890:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr5_4:25300341-25300360 | Msa0845890:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr5_4:25300342-25300361 | Msa0845890:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5_4:25300454-25300473 | Msa0845890:CDS | 25.0% |
| ! | TTTAAGTCCAAAAATCGAAA+AGG | + | chr5_4:25300541-25300560 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr5_4:25300689-25300708 | Msa0845890:intron | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr5_4:25300690-25300709 | Msa0845890:intron | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr5_4:25300776-25300795 | Msa0845890:intron | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr5_4:25300802-25300821 | None:intergenic | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5_4:25300951-25300970 | Msa0845890:intron | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr5_4:25300958-25300977 | Msa0845890:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5_4:25301211-25301230 | Msa0845890:intron | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr5_4:25301429-25301448 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr5_4:25301521-25301540 | Msa0845890:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr5_4:25301595-25301614 | Msa0845890:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr5_4:25301957-25301976 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr5_4:25301957-25301976 | Msa0845890:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr5_4:25302057-25302076 | Msa0845890:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr5_4:25302058-25302077 | Msa0845890:CDS | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | + | chr5_4:25300011-25300030 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr5_4:25300008-25300027 | Msa0845890:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+CGG | - | chr5_4:25300018-25300037 | Msa0845890:CDS | 30.0% | |
| ATAACACTTGATTCTCTGTT+AGG | - | chr5_4:25300089-25300108 | Msa0845890:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr5_4:25300183-25300202 | Msa0845890:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr5_4:25300184-25300203 | Msa0845890:CDS | 30.0% | |
| ! | TCACATATTGGCATGTTTTT+AGG | + | chr5_4:25300223-25300242 | None:intergenic | 30.0% |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr5_4:25300273-25300292 | Msa0845890:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr5_4:25300306-25300325 | Msa0845890:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr5_4:25300385-25300404 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr5_4:25300487-25300506 | Msa0845890:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+TGG | - | chr5_4:25300531-25300550 | Msa0845890:CDS | 30.0% |
| TGGATATCATAGTAAAAACC+TGG | + | chr5_4:25300655-25300674 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr5_4:25300727-25300746 | Msa0845890:intron | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr5_4:25300780-25300799 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr5_4:25300784-25300803 | Msa0845890:intron | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5_4:25300863-25300882 | Msa0845890:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr5_4:25300888-25300907 | Msa0845890:CDS | 30.0% | |
| TGTACATAGCACAAATTCTA+AGG | + | chr5_4:25300998-25301017 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr5_4:25301022-25301041 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr5_4:25301170-25301189 | Msa0845890:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr5_4:25301256-25301275 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr5_4:25301370-25301389 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr5_4:25301420-25301439 | Msa0845890:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr5_4:25301432-25301451 | Msa0845890:intron | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr5_4:25301477-25301496 | Msa0845890:intron | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr5_4:25301562-25301581 | Msa0845890:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr5_4:25301563-25301582 | Msa0845890:intron | 30.0% | |
| TCAAACTCATTCAAATCGTA+TGG | - | chr5_4:25301644-25301663 | Msa0845890:intron | 30.0% | |
| ! | TCTTTCAATGCTTTTCTTTG+TGG | - | chr5_4:25301727-25301746 | Msa0845890:intron | 30.0% |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr5_4:25301768-25301787 | None:intergenic | 30.0% | |
| CTTTAGTCATGTCAACATTA+TGG | - | chr5_4:25301783-25301802 | Msa0845890:intron | 30.0% | |
| TGGAGTATACTTGTTTACTA+CGG | + | chr5_4:25301902-25301921 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr5_4:25301962-25301981 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr5_4:25301960-25301979 | Msa0845890:CDS | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr5_4:25302016-25302035 | Msa0845890:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr5_4:25302129-25302148 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr5_4:25302130-25302149 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr5_4:25302141-25302160 | Msa0845890:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr5_4:25302142-25302161 | Msa0845890:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr5_4:25302238-25302257 | Msa0845890:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr5_4:25302241-25302260 | Msa0845890:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr5_4:25302306-25302325 | Msa0845890:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+TGG | - | chr5_4:25302473-25302492 | Msa0845890:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr5_4:25302629-25302648 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr5_4:25302636-25302655 | Msa0845890:intron | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr5_4:25302647-25302666 | None:intergenic | 30.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr5_4:25300172-25300191 | Msa0845890:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr5_4:25300250-25300269 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr5_4:25300267-25300286 | Msa0845890:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr5_4:25300272-25300291 | Msa0845890:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr5_4:25300424-25300443 | Msa0845890:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr5_4:25300486-25300505 | Msa0845890:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr5_4:25300567-25300586 | Msa0845890:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr5_4:25300869-25300888 | Msa0845890:CDS | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | + | chr5_4:25300989-25301008 | None:intergenic | 35.0% |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr5_4:25301273-25301292 | Msa0845890:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr5_4:25301316-25301335 | Msa0845890:intron | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr5_4:25301445-25301464 | Msa0845890:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr5_4:25301605-25301624 | Msa0845890:intron | 35.0% |
| AAATCGTATGGTCTTCAGTT+TGG | - | chr5_4:25301656-25301675 | Msa0845890:intron | 35.0% | |
| AATCGTATGGTCTTCAGTTT+GGG | - | chr5_4:25301657-25301676 | Msa0845890:intron | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr5_4:25301797-25301816 | Msa0845890:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr5_4:25301798-25301817 | Msa0845890:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr5_4:25302079-25302098 | Msa0845890:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr5_4:25302131-25302150 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr5_4:25302248-25302267 | Msa0845890:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr5_4:25302308-25302327 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr5_4:25302309-25302328 | Msa0845890:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | - | chr5_4:25302362-25302381 | Msa0845890:CDS | 35.0% | |
| ATTTCTCAATGGTGTTCTTG+AGG | - | chr5_4:25302484-25302503 | Msa0845890:CDS | 35.0% | |
| GAGGAGTTTCTTCTTTCTAA+AGG | - | chr5_4:25302521-25302540 | Msa0845890:CDS | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr5_4:25302575-25302594 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr5_4:25302702-25302721 | Msa0845890:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr5_4:25302727-25302746 | Msa0845890:CDS | 35.0% | |
| ATATCAACTTCATCCGAGAG+TGG | - | chr5_4:25299932-25299951 | Msa0845890:CDS | 40.0% | |
| AGAACTGGACTGTCACATAT+TGG | + | chr5_4:25300235-25300254 | None:intergenic | 40.0% | |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr5_4:25300493-25300512 | Msa0845890:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr5_4:25300697-25300716 | Msa0845890:intron | 40.0% |
| ATTTGTGCTATGTACAGCCA+TGG | - | chr5_4:25301002-25301021 | Msa0845890:intron | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr5_4:25301116-25301135 | Msa0845890:intron | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr5_4:25301120-25301139 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr5_4:25301240-25301259 | Msa0845890:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr5_4:25301381-25301400 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr5_4:25301380-25301399 | Msa0845890:intron | 40.0% | |
| AATCGAACAAGTGAATGGTC+TGG | + | chr5_4:25301763-25301782 | None:intergenic | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr5_4:25301816-25301835 | Msa0845890:intron | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr5_4:25301825-25301844 | Msa0845890:intron | 40.0% |
| TTATGAGGAGGACACAACAA+AGG | - | chr5_4:25301972-25301991 | Msa0845890:CDS | 40.0% | |
| TATGAGGAGGACACAACAAA+GGG | - | chr5_4:25301973-25301992 | Msa0845890:CDS | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr5_4:25302111-25302130 | Msa0845890:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr5_4:25302204-25302223 | Msa0845890:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr5_4:25302205-25302224 | Msa0845890:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr5_4:25302251-25302270 | Msa0845890:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr5_4:25302350-25302369 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr5_4:25302375-25302394 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr5_4:25302399-25302418 | None:intergenic | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+AGG | + | chr5_4:25302567-25302586 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr5_4:25302653-25302672 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr5_4:25302715-25302734 | None:intergenic | 40.0% | |
| ATCCGAGAGTGGACAATTGA+CGG | - | chr5_4:25299943-25299962 | Msa0845890:CDS | 45.0% | |
| AACCGTCAATTGTCCACTCT+CGG | + | chr5_4:25299948-25299967 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr5_4:25300277-25300296 | Msa0845890:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr5_4:25300286-25300305 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5_4:25300289-25300308 | Msa0845890:CDS | 45.0% |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr5_4:25300573-25300592 | Msa0845890:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr5_4:25300576-25300595 | Msa0845890:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr5_4:25300634-25300653 | Msa0845890:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr5_4:25300675-25300694 | None:intergenic | 45.0% | |
| TGGTCTTTGCTCATGGCATA+TGG | - | chr5_4:25301452-25301471 | Msa0845890:intron | 45.0% | |
| GGTCTTTGCTCATGGCATAT+GGG | - | chr5_4:25301453-25301472 | Msa0845890:intron | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr5_4:25301621-25301640 | None:intergenic | 45.0% | |
| TATGGTCTTCAGTTTGGGTG+AGG | - | chr5_4:25301662-25301681 | Msa0845890:intron | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr5_4:25301679-25301698 | Msa0845890:intron | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr5_4:25301875-25301894 | Msa0845890:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr5_4:25302124-25302143 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr5_4:25302206-25302225 | Msa0845890:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr5_4:25302226-25302245 | None:intergenic | 45.0% | |
| TCAATGGTGTTCTTGAGGCA+GGG | - | chr5_4:25302489-25302508 | Msa0845890:CDS | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr5_4:25302496-25302515 | Msa0845890:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr5_4:25302597-25302616 | Msa0845890:intron | 45.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | + | chr5_4:25300397-25300416 | None:intergenic | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr5_4:25300499-25300518 | Msa0845890:CDS | 50.0% |
| ACCATATACACAGACCAGGC+TGG | - | chr5_4:25301384-25301403 | Msa0845890:intron | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr5_4:25301388-25301407 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr5_4:25301616-25301635 | Msa0845890:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr5_4:25301880-25301899 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr5_4:25302162-25302181 | Msa0845890:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr5_4:25302448-25302467 | Msa0845890:CDS | 50.0% | |
| CTCAATGGTGTTCTTGAGGC+AGG | - | chr5_4:25302488-25302507 | Msa0845890:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr5_4:25302596-25302615 | Msa0845890:intron | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr5_4:25302611-25302630 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr5_4:25300502-25300521 | Msa0845890:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5_4:25300580-25300599 | Msa0845890:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr5_4:25301401-25301420 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr5_4:25301881-25301900 | None:intergenic | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr5_4:25302502-25302521 | Msa0845890:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr5_4:25300507-25300526 | Msa0845890:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr5_4:25302451-25302470 | Msa0845890:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 25299923 | 25302763 | 25299923 | ID=Msa0845890;Name=Msa0845890 |
| chr5_4 | mRNA | 25299923 | 25302763 | 25299923 | ID=Msa0845890-mRNA-1;Parent=Msa0845890;Name=Msa0845890-mRNA-1;_AED=0.15;_eAED=0.17;_QI=0|0|0|1|1|1|5|0|606 |
| chr5_4 | exon | 25302654 | 25302763 | 25302654 | ID=Msa0845890-mRNA-1:exon:10096;Parent=Msa0845890-mRNA-1 |
| chr5_4 | exon | 25301881 | 25302575 | 25301881 | ID=Msa0845890-mRNA-1:exon:10095;Parent=Msa0845890-mRNA-1 |
| chr5_4 | exon | 25301021 | 25301127 | 25301021 | ID=Msa0845890-mRNA-1:exon:10094;Parent=Msa0845890-mRNA-1 |
| chr5_4 | exon | 25300803 | 25300926 | 25300803 | ID=Msa0845890-mRNA-1:exon:10093;Parent=Msa0845890-mRNA-1 |
| chr5_4 | exon | 25299923 | 25300707 | 25299923 | ID=Msa0845890-mRNA-1:exon:10092;Parent=Msa0845890-mRNA-1 |
| chr5_4 | CDS | 25302654 | 25302763 | 25302654 | ID=Msa0845890-mRNA-1:cds;Parent=Msa0845890-mRNA-1 |
| chr5_4 | CDS | 25301881 | 25302575 | 25301881 | ID=Msa0845890-mRNA-1:cds;Parent=Msa0845890-mRNA-1 |
| chr5_4 | CDS | 25301021 | 25301127 | 25301021 | ID=Msa0845890-mRNA-1:cds;Parent=Msa0845890-mRNA-1 |
| chr5_4 | CDS | 25300803 | 25300926 | 25300803 | ID=Msa0845890-mRNA-1:cds;Parent=Msa0845890-mRNA-1 |
| chr5_4 | CDS | 25299923 | 25300707 | 25299923 | ID=Msa0845890-mRNA-1:cds;Parent=Msa0845890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
