Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846250 | AFJ53055.1 | 58.333 | 264 | 67 | 3 | 1 | 264 | 57 | 277 | 3.76e-88 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846250 | sp|A0A4D6Q411|MYB1_CROXC | 34.615 | 156 | 59 | 4 | 1 | 156 | 57 | 169 | 2.32e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846250 | I6Q0S4 | 58.333 | 264 | 67 | 3 | 1 | 264 | 57 | 277 | 1.80e-88 | 274 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0846250 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846250 | MtrunA17_Chr4g0070611 | 56.767 | 266 | 68 | 3 | 1 | 264 | 57 | 277 | 1.12e-90 | 270 |
| Msa0846250 | MtrunA17_Chr4g0070641 | 48.667 | 150 | 30 | 4 | 1 | 148 | 57 | 161 | 9.16e-28 | 104 |
| Msa0846250 | MtrunA17_Chr4g0055981 | 79.070 | 43 | 9 | 0 | 1 | 43 | 100 | 142 | 1.54e-15 | 73.9 |
| Msa0846250 | MtrunA17_Chr4g0044421 | 72.093 | 43 | 12 | 0 | 1 | 43 | 57 | 99 | 2.50e-14 | 69.7 |
| Msa0846250 | MtrunA17_Chr8g0343831 | 72.093 | 43 | 12 | 0 | 1 | 43 | 53 | 95 | 4.05e-14 | 70.1 |
| Msa0846250 | MtrunA17_Chr3g0121241 | 67.442 | 43 | 14 | 0 | 1 | 43 | 87 | 129 | 7.31e-14 | 70.1 |
| Msa0846250 | MtrunA17_Chr8g0346561 | 54.839 | 62 | 27 | 1 | 1 | 61 | 57 | 118 | 8.84e-14 | 69.7 |
| Msa0846250 | MtrunA17_Chr8g0360111 | 74.419 | 43 | 11 | 0 | 1 | 43 | 70 | 112 | 1.59e-13 | 68.6 |
| Msa0846250 | MtrunA17_Chr5g0435101 | 69.767 | 43 | 13 | 0 | 1 | 43 | 56 | 98 | 2.61e-13 | 67.4 |
| Msa0846250 | MtrunA17_Chr7g0275911 | 67.442 | 43 | 14 | 0 | 1 | 43 | 57 | 99 | 5.01e-13 | 67.0 |
| Msa0846250 | MtrunA17_Chr7g0240821 | 67.442 | 43 | 14 | 0 | 1 | 43 | 46 | 88 | 5.28e-13 | 66.6 |
| Msa0846250 | MtrunA17_Chr4g0037141 | 65.116 | 43 | 15 | 0 | 1 | 43 | 57 | 99 | 2.12e-12 | 65.9 |
| Msa0846250 | MtrunA17_Chr2g0328771 | 40.741 | 108 | 55 | 2 | 1 | 108 | 65 | 163 | 2.46e-12 | 65.9 |
| Msa0846250 | MtrunA17_Chr7g0229101 | 64.444 | 45 | 16 | 0 | 1 | 45 | 17 | 61 | 2.96e-12 | 64.3 |
| Msa0846250 | MtrunA17_Chr7g0228991 | 67.442 | 43 | 14 | 0 | 1 | 43 | 74 | 116 | 7.73e-12 | 63.9 |
| Msa0846250 | MtrunA17_Chr5g0434901 | 65.116 | 43 | 15 | 0 | 1 | 43 | 18 | 60 | 1.02e-11 | 60.8 |
| Msa0846250 | MtrunA17_Chr4g0022901 | 65.116 | 43 | 15 | 0 | 1 | 43 | 58 | 100 | 3.63e-11 | 62.0 |
| Msa0846250 | MtrunA17_Chr4g0022931 | 65.116 | 43 | 15 | 0 | 1 | 43 | 58 | 100 | 6.09e-11 | 61.2 |
| Msa0846250 | MtrunA17_Chr3g0088461 | 65.116 | 43 | 15 | 0 | 1 | 43 | 67 | 109 | 6.99e-11 | 61.6 |
| Msa0846250 | MtrunA17_Chr7g0261281 | 33.071 | 127 | 80 | 2 | 1 | 127 | 57 | 178 | 7.22e-11 | 61.2 |
| Msa0846250 | MtrunA17_Chr3g0131121 | 62.791 | 43 | 16 | 0 | 1 | 43 | 57 | 99 | 7.96e-11 | 61.2 |
| Msa0846250 | MtrunA17_Chr4g0022911 | 62.791 | 43 | 16 | 0 | 1 | 43 | 58 | 100 | 9.36e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846250 | AT5G35550.2 | 37.662 | 154 | 42 | 5 | 1 | 154 | 62 | 161 | 2.04e-15 | 74.3 |
| Msa0846250 | AT5G35550.1 | 37.662 | 154 | 42 | 5 | 1 | 154 | 59 | 158 | 2.40e-15 | 73.9 |
| Msa0846250 | AT3G13540.1 | 67.442 | 43 | 14 | 0 | 1 | 43 | 68 | 110 | 6.92e-14 | 69.7 |
| Msa0846250 | AT5G14750.3 | 69.767 | 43 | 13 | 0 | 1 | 43 | 27 | 69 | 2.33e-13 | 67.0 |
| Msa0846250 | AT5G14750.1 | 69.767 | 43 | 13 | 0 | 1 | 43 | 61 | 103 | 4.63e-13 | 66.6 |
| Msa0846250 | AT1G66370.1 | 67.442 | 43 | 14 | 0 | 1 | 43 | 53 | 95 | 5.70e-13 | 67.4 |
| Msa0846250 | AT4G09460.1 | 65.116 | 43 | 15 | 0 | 1 | 43 | 57 | 99 | 1.72e-12 | 65.9 |
| Msa0846250 | AT5G52600.1 | 33.607 | 122 | 66 | 1 | 1 | 122 | 57 | 163 | 2.18e-12 | 64.7 |
| Msa0846250 | AT4G38620.1 | 65.116 | 43 | 15 | 0 | 1 | 43 | 57 | 99 | 2.57e-12 | 65.9 |
| Msa0846250 | AT1G22640.1 | 65.116 | 43 | 15 | 0 | 1 | 43 | 57 | 99 | 2.93e-12 | 65.5 |
| Msa0846250 | AT5G14750.4 | 69.048 | 42 | 13 | 0 | 2 | 43 | 1 | 42 | 3.25e-12 | 63.2 |
| Msa0846250 | AT5G14750.2 | 69.048 | 42 | 13 | 0 | 2 | 43 | 1 | 42 | 3.25e-12 | 63.2 |
| Msa0846250 | AT5G40330.1 | 67.442 | 43 | 14 | 0 | 1 | 43 | 57 | 99 | 4.89e-12 | 64.3 |
| Msa0846250 | AT2G16720.1 | 65.116 | 43 | 15 | 0 | 1 | 43 | 57 | 99 | 5.05e-12 | 64.7 |
| Msa0846250 | AT2G31180.1 | 29.814 | 161 | 97 | 3 | 1 | 146 | 57 | 216 | 7.33e-12 | 64.3 |
| Msa0846250 | AT4G34990.1 | 65.116 | 43 | 15 | 0 | 1 | 43 | 57 | 99 | 8.39e-12 | 64.3 |
| Msa0846250 | AT5G12870.1 | 50.769 | 65 | 32 | 0 | 1 | 65 | 63 | 127 | 1.20e-11 | 63.9 |
| Msa0846250 | AT3G27920.1 | 65.116 | 43 | 15 | 0 | 1 | 43 | 59 | 101 | 1.27e-11 | 63.2 |
| Msa0846250 | AT2G47190.1 | 35.833 | 120 | 64 | 4 | 1 | 111 | 65 | 180 | 1.27e-11 | 63.9 |
| Msa0846250 | AT1G22640.3 | 64.286 | 42 | 15 | 0 | 2 | 43 | 1 | 42 | 2.92e-11 | 61.6 |
| Msa0846250 | AT1G06180.1 | 46.667 | 75 | 37 | 2 | 1 | 75 | 57 | 128 | 4.66e-11 | 62.0 |
| Msa0846250 | AT1G35515.1 | 58.140 | 43 | 18 | 0 | 1 | 43 | 57 | 99 | 5.23e-11 | 61.2 |
Find 33 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGATATTTGCATTATT+TGG | 0.151361 | 5_4:+26023030 | None:intergenic |
| AATCATTAACATGCTCTATT+TGG | 0.177978 | 5_4:+26022812 | None:intergenic |
| ATGTTGCCTCTCTTATTATA+TGG | 0.267861 | 5_4:+26023963 | None:intergenic |
| AAACCAACAATGCATGTTAA+TGG | 0.324126 | 5_4:-26022862 | Msa0846250:CDS |
| TATGCCTTATTGATGAGTTA+TGG | 0.355271 | 5_4:+26022920 | None:intergenic |
| CACTCCATAACTCATCAATA+AGG | 0.394454 | 5_4:-26022924 | Msa0846250:CDS |
| ACATATGAGTTTGGCAGTAT+TGG | 0.396049 | 5_4:+26022994 | None:intergenic |
| CCACCATTAACATGCATTGT+TGG | 0.410623 | 5_4:+26022859 | None:intergenic |
| GGACGGACAACATATGAGTT+TGG | 0.412003 | 5_4:+26022985 | None:intergenic |
| GTGTTTGGCATTACTGGCTT+AGG | 0.421859 | 5_4:+26023528 | None:intergenic |
| CTCTATTTGGTTGTTACTCA+AGG | 0.430478 | 5_4:+26022825 | None:intergenic |
| TGAGCAGACTCCTATGTTCT+CGG | 0.435799 | 5_4:-26022635 | Msa0846250:CDS |
| CGGATGAGTTTATCAAGGAT+TGG | 0.437741 | 5_4:-26022615 | Msa0846250:CDS |
| GAGTTTGGCAGTATTGGCTT+AGG | 0.441838 | 5_4:+26023000 | None:intergenic |
| ATTATTTGGATAAGAATTGT+TGG | 0.444825 | 5_4:+26023044 | None:intergenic |
| TGTTGTTGAAAATTTGTGTT+TGG | 0.459269 | 5_4:+26023591 | None:intergenic |
| CTAATAGCAGGAAGACTACC+AGG | 0.477500 | 5_4:-26023750 | Msa0846250:CDS |
| GTGTTTGGCAGTACTGACTT+AGG | 0.490084 | 5_4:+26023606 | None:intergenic |
| TTGTTATTTGATATTAACAT+GGG | 0.497476 | 5_4:-26022748 | Msa0846250:CDS |
| GTTCTCGGATGAGTTTATCA+AGG | 0.510704 | 5_4:-26022620 | Msa0846250:CDS |
| GATTTCTTTGTCTTTCGCCC+TGG | 0.530316 | 5_4:+26023732 | None:intergenic |
| CAACAATGCATGTTAATGGT+GGG | 0.535972 | 5_4:-26022858 | Msa0846250:CDS |
| GGTAGATGGTCTCTAATAGC+AGG | 0.536915 | 5_4:-26023762 | Msa0846250:intron |
| ATAAACTCATCCGAGAACAT+AGG | 0.560149 | 5_4:+26022625 | None:intergenic |
| CCAACAATGCATGTTAATGG+TGG | 0.573476 | 5_4:-26022859 | Msa0846250:CDS |
| AACAATGCATGTTAATGGTG+GGG | 0.588822 | 5_4:-26022857 | Msa0846250:CDS |
| TTTGTTATTTGATATTAACA+TGG | 0.598499 | 5_4:-26022749 | Msa0846250:CDS |
| CTAAGTCCATATAATAAGAG+AGG | 0.606874 | 5_4:-26023969 | Msa0846250:CDS |
| TGTTATTTGATATTAACATG+GGG | 0.610791 | 5_4:-26022747 | Msa0846250:CDS |
| ATAGGAGTCTGCTCAGAACA+AGG | 0.616428 | 5_4:+26022643 | None:intergenic |
| GTTATTTGATATTAACATGG+GGG | 0.645537 | 5_4:-26022746 | Msa0846250:CDS |
| TAATAGCAGGAAGACTACCA+GGG | 0.716144 | 5_4:-26023749 | Msa0846250:CDS |
| GGAGTCTGCTCAGAACAAGG+TGG | 0.761029 | 5_4:+26022646 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAAATAAAAAAAA+AGG | - | chr5_4:26022902-26022921 | Msa0846250:CDS | 0.0% |
| !! | ATTAAAAAAAATAAAAAAAA+AGG | - | chr5_4:26022902-26022921 | Msa0846250:CDS | 0.0% |
| !! | ATTTATTAGAGAAAAATTGT+TGG | + | chr5_4:26023108-26023127 | None:intergenic | 15.0% |
| !!! | TAATGATTTTTTGTCATTTT+CGG | - | chr5_4:26023793-26023812 | Msa0846250:intron | 15.0% |
| !!! | TTTGTTATTTGATATTAACA+TGG | - | chr5_4:26023841-26023860 | Msa0846250:intron | 15.0% |
| !!! | TTGTTATTTGATATTAACAT+GGG | - | chr5_4:26023842-26023861 | Msa0846250:intron | 15.0% |
| !! | ATTTATTAGAGAAAAATTGT+TGG | + | chr5_4:26023108-26023127 | None:intergenic | 15.0% |
| !!! | TAATGATTTTTTGTCATTTT+CGG | - | chr5_4:26023793-26023812 | Msa0846250:intron | 15.0% |
| !!! | TTTGTTATTTGATATTAACA+TGG | - | chr5_4:26023841-26023860 | Msa0846250:intron | 15.0% |
| !!! | TTGTTATTTGATATTAACAT+GGG | - | chr5_4:26023842-26023861 | Msa0846250:intron | 15.0% |
| !!! | AGATTGTTGTTTGTATTTTT+TGG | + | chr5_4:26023200-26023219 | None:intergenic | 20.0% |
| !!! | TGATTGTTGTTTGTATTTTT+TGG | + | chr5_4:26023407-26023426 | None:intergenic | 20.0% |
| !!! | ATTTTTTTGAGAAGAATTGT+TGG | + | chr5_4:26023471-26023490 | None:intergenic | 20.0% |
| !! | ATTATTTGGATAAGAATTGT+TGG | + | chr5_4:26023549-26023568 | None:intergenic | 20.0% |
| !! | TCAATGATATTTGCATTATT+TGG | + | chr5_4:26023563-26023582 | None:intergenic | 20.0% |
| !!! | TGTTATTTGATATTAACATG+GGG | - | chr5_4:26023843-26023862 | Msa0846250:intron | 20.0% |
| !!! | AGATTGTTGTTTGTATTTTT+TGG | + | chr5_4:26023200-26023219 | None:intergenic | 20.0% |
| !!! | TGATTGTTGTTTGTATTTTT+TGG | + | chr5_4:26023407-26023426 | None:intergenic | 20.0% |
| !!! | ATTTTTTTGAGAAGAATTGT+TGG | + | chr5_4:26023471-26023490 | None:intergenic | 20.0% |
| !! | ATTATTTGGATAAGAATTGT+TGG | + | chr5_4:26023549-26023568 | None:intergenic | 20.0% |
| !! | TCAATGATATTTGCATTATT+TGG | + | chr5_4:26023563-26023582 | None:intergenic | 20.0% |
| !!! | TGTTATTTGATATTAACATG+GGG | - | chr5_4:26023843-26023862 | Msa0846250:intron | 20.0% |
| ! | ATCCAATTTCAAAAACTACT+AGG | - | chr5_4:26022675-26022694 | Msa0846250:CDS | 25.0% |
| !!! | TTCCTAGTAGTTTTTGAAAT+TGG | + | chr5_4:26022680-26022699 | None:intergenic | 25.0% |
| ! | TGTTGTTGAAAATTTGTGTT+TGG | + | chr5_4:26023002-26023021 | None:intergenic | 25.0% |
| ! | TACTATTGAAGATCTTTGTT+TGG | + | chr5_4:26023236-26023255 | None:intergenic | 25.0% |
| !!! | TGATTGTTGTTTGCATTTTT+TGG | + | chr5_4:26023329-26023348 | None:intergenic | 25.0% |
| !!! | ATTTTTTGGAGAAGAATTGT+TGG | + | chr5_4:26023393-26023412 | None:intergenic | 25.0% |
| !!! | TTAGAGCATTTTTTAGCTTT+TGG | + | chr5_4:26023629-26023648 | None:intergenic | 25.0% |
| ! | AAAAGCTAAAAAATGCTCTA+AGG | - | chr5_4:26023628-26023647 | Msa0846250:CDS | 25.0% |
| ! | AATCATTAACATGCTCTATT+TGG | + | chr5_4:26023781-26023800 | None:intergenic | 25.0% |
| ! | GTTATTTGATATTAACATGG+GGG | - | chr5_4:26023844-26023863 | Msa0846250:intron | 25.0% |
| ! | ATCCAATTTCAAAAACTACT+AGG | - | chr5_4:26022675-26022694 | Msa0846250:CDS | 25.0% |
| !!! | TTCCTAGTAGTTTTTGAAAT+TGG | + | chr5_4:26022680-26022699 | None:intergenic | 25.0% |
| ! | TGTTGTTGAAAATTTGTGTT+TGG | + | chr5_4:26023002-26023021 | None:intergenic | 25.0% |
| ! | TACTATTGAAGATCTTTGTT+TGG | + | chr5_4:26023236-26023255 | None:intergenic | 25.0% |
| !!! | TGATTGTTGTTTGCATTTTT+TGG | + | chr5_4:26023329-26023348 | None:intergenic | 25.0% |
| !!! | ATTTTTTGGAGAAGAATTGT+TGG | + | chr5_4:26023393-26023412 | None:intergenic | 25.0% |
| !!! | TTAGAGCATTTTTTAGCTTT+TGG | + | chr5_4:26023629-26023648 | None:intergenic | 25.0% |
| ! | AAAAGCTAAAAAATGCTCTA+AGG | - | chr5_4:26023628-26023647 | Msa0846250:CDS | 25.0% |
| ! | AATCATTAACATGCTCTATT+TGG | + | chr5_4:26023781-26023800 | None:intergenic | 25.0% |
| ! | GTTATTTGATATTAACATGG+GGG | - | chr5_4:26023844-26023863 | Msa0846250:intron | 25.0% |
| CTAAGTCCATATAATAAGAG+AGG | - | chr5_4:26022621-26022640 | Msa0846250:CDS | 30.0% | |
| ATGTTGCCTCTCTTATTATA+TGG | + | chr5_4:26022630-26022649 | None:intergenic | 30.0% | |
| TTCAAAAACTACTAGGAAAC+AGG | - | chr5_4:26022682-26022701 | Msa0846250:CDS | 30.0% | |
| !!! | GGATTGTTGTTTGCATTTTT+TGG | + | chr5_4:26022966-26022985 | None:intergenic | 30.0% |
| AGATATGTGTTTGGCAATAT+TGG | + | chr5_4:26023278-26023297 | None:intergenic | 30.0% | |
| TGATGTTGAAGATATGTGTT+TGG | + | chr5_4:26023287-26023306 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGGAGAAGAATTGC+TGG | + | chr5_4:26023315-26023334 | None:intergenic | 30.0% |
| AAATATGTGTTTGACAGTTC+TGG | + | chr5_4:26023512-26023531 | None:intergenic | 30.0% | |
| !!! | AGCATTTTTTAGCTTTTGGA+CGG | + | chr5_4:26023625-26023644 | None:intergenic | 30.0% |
| ! | TATGCCTTATTGATGAGTTA+TGG | + | chr5_4:26023673-26023692 | None:intergenic | 30.0% |
| AAACCAACAATGCATGTTAA+TGG | - | chr5_4:26023728-26023747 | Msa0846250:CDS | 30.0% | |
| CTAAGTCCATATAATAAGAG+AGG | - | chr5_4:26022621-26022640 | Msa0846250:CDS | 30.0% | |
| ATGTTGCCTCTCTTATTATA+TGG | + | chr5_4:26022630-26022649 | None:intergenic | 30.0% | |
| TTCAAAAACTACTAGGAAAC+AGG | - | chr5_4:26022682-26022701 | Msa0846250:CDS | 30.0% | |
| !!! | GGATTGTTGTTTGCATTTTT+TGG | + | chr5_4:26022966-26022985 | None:intergenic | 30.0% |
| AGATATGTGTTTGGCAATAT+TGG | + | chr5_4:26023278-26023297 | None:intergenic | 30.0% | |
| TGATGTTGAAGATATGTGTT+TGG | + | chr5_4:26023287-26023306 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGGAGAAGAATTGC+TGG | + | chr5_4:26023315-26023334 | None:intergenic | 30.0% |
| AAATATGTGTTTGACAGTTC+TGG | + | chr5_4:26023512-26023531 | None:intergenic | 30.0% | |
| !!! | AGCATTTTTTAGCTTTTGGA+CGG | + | chr5_4:26023625-26023644 | None:intergenic | 30.0% |
| ! | TATGCCTTATTGATGAGTTA+TGG | + | chr5_4:26023673-26023692 | None:intergenic | 30.0% |
| AAACCAACAATGCATGTTAA+TGG | - | chr5_4:26023728-26023747 | Msa0846250:CDS | 30.0% | |
| CATCTACCATAAATCAAAGG+CGG | + | chr5_4:26022816-26022835 | None:intergenic | 35.0% | |
| GACCATCTACCATAAATCAA+AGG | + | chr5_4:26022819-26022838 | None:intergenic | 35.0% | |
| !!! | GGATTGTTGTGTGCATTTTT+TGG | + | chr5_4:26023044-26023063 | None:intergenic | 35.0% |
| !! | CAATATTGGCTTAGGATTGT+TGG | + | chr5_4:26023264-26023283 | None:intergenic | 35.0% |
| AGATCTGTGTTTGGTATTAC+TGG | + | chr5_4:26023356-26023375 | None:intergenic | 35.0% | |
| TGTTGTTGAAGATCTGTGTT+TGG | + | chr5_4:26023365-26023384 | None:intergenic | 35.0% | |
| ACATATGAGTTTGGCAGTAT+TGG | + | chr5_4:26023599-26023618 | None:intergenic | 35.0% | |
| CACTCCATAACTCATCAATA+AGG | - | chr5_4:26023666-26023685 | Msa0846250:CDS | 35.0% | |
| CAACAATGCATGTTAATGGT+GGG | - | chr5_4:26023732-26023751 | Msa0846250:CDS | 35.0% | |
| AACAATGCATGTTAATGGTG+GGG | - | chr5_4:26023733-26023752 | Msa0846250:CDS | 35.0% | |
| CTCTATTTGGTTGTTACTCA+AGG | + | chr5_4:26023768-26023787 | None:intergenic | 35.0% | |
| ATAAACTCATCCGAGAACAT+AGG | + | chr5_4:26023968-26023987 | None:intergenic | 35.0% | |
| TTATCAAGGATTGGACAATG+TGG | - | chr5_4:26023984-26024003 | Msa0846250:CDS | 35.0% | |
| CATCTACCATAAATCAAAGG+CGG | + | chr5_4:26022816-26022835 | None:intergenic | 35.0% | |
| GACCATCTACCATAAATCAA+AGG | + | chr5_4:26022819-26022838 | None:intergenic | 35.0% | |
| !!! | GGATTGTTGTGTGCATTTTT+TGG | + | chr5_4:26023044-26023063 | None:intergenic | 35.0% |
| !! | CAATATTGGCTTAGGATTGT+TGG | + | chr5_4:26023264-26023283 | None:intergenic | 35.0% |
| AGATCTGTGTTTGGTATTAC+TGG | + | chr5_4:26023356-26023375 | None:intergenic | 35.0% | |
| TGTTGTTGAAGATCTGTGTT+TGG | + | chr5_4:26023365-26023384 | None:intergenic | 35.0% | |
| ACATATGAGTTTGGCAGTAT+TGG | + | chr5_4:26023599-26023618 | None:intergenic | 35.0% | |
| CACTCCATAACTCATCAATA+AGG | - | chr5_4:26023666-26023685 | Msa0846250:CDS | 35.0% | |
| CAACAATGCATGTTAATGGT+GGG | - | chr5_4:26023732-26023751 | Msa0846250:CDS | 35.0% | |
| AACAATGCATGTTAATGGTG+GGG | - | chr5_4:26023733-26023752 | Msa0846250:CDS | 35.0% | |
| CTCTATTTGGTTGTTACTCA+AGG | + | chr5_4:26023768-26023787 | None:intergenic | 35.0% | |
| ATAAACTCATCCGAGAACAT+AGG | + | chr5_4:26023968-26023987 | None:intergenic | 35.0% | |
| ! | CGCCTTTGATTTATGGTAGA+TGG | - | chr5_4:26022814-26022833 | Msa0846250:CDS | 40.0% |
| TAATAGCAGGAAGACTACCA+GGG | - | chr5_4:26022841-26022860 | Msa0846250:CDS | 40.0% | |
| AGACTAGTGTTTGGCATTAC+TGG | + | chr5_4:26023071-26023090 | None:intergenic | 40.0% | |
| TGCTGTTGAAGACTAGTGTT+TGG | + | chr5_4:26023080-26023099 | None:intergenic | 40.0% | |
| !! | GTGTTTAGCAGTACTGACTT+AGG | + | chr5_4:26023143-26023162 | None:intergenic | 40.0% |
| !! | GTGTTTGGCAATATTGGCTT+AGG | + | chr5_4:26023272-26023291 | None:intergenic | 40.0% |
| TGCTGTTGAAGATCTGTGTT+TGG | + | chr5_4:26023443-26023462 | None:intergenic | 40.0% | |
| !! | TGTTTGACAGTTCTGGCTTA+TGG | + | chr5_4:26023505-26023524 | None:intergenic | 40.0% |
| CCACCATTAACATGCATTGT+TGG | + | chr5_4:26023734-26023753 | None:intergenic | 40.0% | |
| CCAACAATGCATGTTAATGG+TGG | - | chr5_4:26023731-26023750 | Msa0846250:CDS | 40.0% | |
| !!! | TGTCATTTTCGGATGCTGAA+AGG | - | chr5_4:26023804-26023823 | Msa0846250:intron | 40.0% |
| !! | GTCATTTTCGGATGCTGAAA+GGG | - | chr5_4:26023805-26023824 | Msa0846250:intron | 40.0% |
| GTTCTCGGATGAGTTTATCA+AGG | - | chr5_4:26023970-26023989 | Msa0846250:CDS | 40.0% | |
| CGGATGAGTTTATCAAGGAT+TGG | - | chr5_4:26023975-26023994 | Msa0846250:CDS | 40.0% | |
| ! | CGCCTTTGATTTATGGTAGA+TGG | - | chr5_4:26022814-26022833 | Msa0846250:CDS | 40.0% |
| TAATAGCAGGAAGACTACCA+GGG | - | chr5_4:26022841-26022860 | Msa0846250:CDS | 40.0% | |
| AGACTAGTGTTTGGCATTAC+TGG | + | chr5_4:26023071-26023090 | None:intergenic | 40.0% | |
| TGCTGTTGAAGACTAGTGTT+TGG | + | chr5_4:26023080-26023099 | None:intergenic | 40.0% | |
| !! | GTGTTTAGCAGTACTGACTT+AGG | + | chr5_4:26023143-26023162 | None:intergenic | 40.0% |
| !! | GTGTTTGGCAATATTGGCTT+AGG | + | chr5_4:26023272-26023291 | None:intergenic | 40.0% |
| TGCTGTTGAAGATCTGTGTT+TGG | + | chr5_4:26023443-26023462 | None:intergenic | 40.0% | |
| !! | TGTTTGACAGTTCTGGCTTA+TGG | + | chr5_4:26023505-26023524 | None:intergenic | 40.0% |
| CCACCATTAACATGCATTGT+TGG | + | chr5_4:26023734-26023753 | None:intergenic | 40.0% | |
| CCAACAATGCATGTTAATGG+TGG | - | chr5_4:26023731-26023750 | Msa0846250:CDS | 40.0% | |
| !!! | TGTCATTTTCGGATGCTGAA+AGG | - | chr5_4:26023804-26023823 | Msa0846250:intron | 40.0% |
| !! | GTCATTTTCGGATGCTGAAA+GGG | - | chr5_4:26023805-26023824 | Msa0846250:intron | 40.0% |
| GTTCTCGGATGAGTTTATCA+AGG | - | chr5_4:26023970-26023989 | Msa0846250:CDS | 40.0% | |
| CGGATGAGTTTATCAAGGAT+TGG | - | chr5_4:26023975-26023994 | Msa0846250:CDS | 40.0% | |
| ! | ACTGCTCCGCCTTTGATTTA+TGG | - | chr5_4:26022807-26022826 | Msa0846250:CDS | 45.0% |
| GGTAGATGGTCTCTAATAGC+AGG | - | chr5_4:26022828-26022847 | Msa0846250:CDS | 45.0% | |
| CTAATAGCAGGAAGACTACC+AGG | - | chr5_4:26022840-26022859 | Msa0846250:CDS | 45.0% | |
| GATTTCTTTGTCTTTCGCCC+TGG | + | chr5_4:26022861-26022880 | None:intergenic | 45.0% | |
| !! | GTGTTTGGCAGTACTGACTT+AGG | + | chr5_4:26022987-26023006 | None:intergenic | 45.0% |
| !! | GTGTTTGGCATTACTGGCTT+AGG | + | chr5_4:26023065-26023084 | None:intergenic | 45.0% |
| !! | GAGTTTGGCAGTATTGGCTT+AGG | + | chr5_4:26023593-26023612 | None:intergenic | 45.0% |
| GGACGGACAACATATGAGTT+TGG | + | chr5_4:26023608-26023627 | None:intergenic | 45.0% | |
| ATAGGAGTCTGCTCAGAACA+AGG | + | chr5_4:26023950-26023969 | None:intergenic | 45.0% | |
| TGAGCAGACTCCTATGTTCT+CGG | - | chr5_4:26023955-26023974 | Msa0846250:CDS | 45.0% | |
| ! | ACTGCTCCGCCTTTGATTTA+TGG | - | chr5_4:26022807-26022826 | Msa0846250:CDS | 45.0% |
| GGTAGATGGTCTCTAATAGC+AGG | - | chr5_4:26022828-26022847 | Msa0846250:CDS | 45.0% | |
| CTAATAGCAGGAAGACTACC+AGG | - | chr5_4:26022840-26022859 | Msa0846250:CDS | 45.0% | |
| GATTTCTTTGTCTTTCGCCC+TGG | + | chr5_4:26022861-26022880 | None:intergenic | 45.0% | |
| !! | GTGTTTGGCAGTACTGACTT+AGG | + | chr5_4:26022987-26023006 | None:intergenic | 45.0% |
| !! | GTGTTTGGCATTACTGGCTT+AGG | + | chr5_4:26023065-26023084 | None:intergenic | 45.0% |
| !! | GAGTTTGGCAGTATTGGCTT+AGG | + | chr5_4:26023593-26023612 | None:intergenic | 45.0% |
| GGACGGACAACATATGAGTT+TGG | + | chr5_4:26023608-26023627 | None:intergenic | 45.0% | |
| ATAGGAGTCTGCTCAGAACA+AGG | + | chr5_4:26023950-26023969 | None:intergenic | 45.0% | |
| TGAGCAGACTCCTATGTTCT+CGG | - | chr5_4:26023955-26023974 | Msa0846250:CDS | 45.0% | |
| GGAGTCTGCTCAGAACAAGG+TGG | + | chr5_4:26023947-26023966 | None:intergenic | 55.0% | |
| GGAGTCTGCTCAGAACAAGG+TGG | + | chr5_4:26023947-26023966 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 26022609 | 26024003 | 26022609 | ID=Msa0846250;Name=Msa0846250 |
| chr5_4 | mRNA | 26022609 | 26024003 | 26022609 | ID=Msa0846250-mRNA-1;Parent=Msa0846250;Name=Msa0846250-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|0|0|1|0|0|3|0|265 |
| chr5_4 | exon | 26023909 | 26024003 | 26023909 | ID=Msa0846250-mRNA-1:exon:10263;Parent=Msa0846250-mRNA-1 |
| chr5_4 | exon | 26023542 | 26023779 | 26023542 | ID=Msa0846250-mRNA-1:exon:10262;Parent=Msa0846250-mRNA-1 |
| chr5_4 | exon | 26022609 | 26023070 | 26022609 | ID=Msa0846250-mRNA-1:exon:10261;Parent=Msa0846250-mRNA-1 |
| chr5_4 | CDS | 26023909 | 26024003 | 26023909 | ID=Msa0846250-mRNA-1:cds;Parent=Msa0846250-mRNA-1 |
| chr5_4 | CDS | 26023542 | 26023779 | 26023542 | ID=Msa0846250-mRNA-1:cds;Parent=Msa0846250-mRNA-1 |
| chr5_4 | CDS | 26022609 | 26023070 | 26022609 | ID=Msa0846250-mRNA-1:cds;Parent=Msa0846250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
