AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0846340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846340 MtrunA17_Chr2g0287651 42.816 696 379 6 89 779 63 744 0.0 581
Msa0846340 MtrunA17_Chr1g0203051 34.228 596 369 7 64 644 34 621 8.59e-114 364
Msa0846340 MtrunA17_Chr1g0202341 32.653 588 371 11 100 672 50 627 1.40e-94 314
Msa0846340 MtrunA17_Chr5g0448761 32.105 570 366 9 105 659 64 627 8.26e-91 306
Msa0846340 MtrunA17_Chr2g0324011 29.352 586 396 6 105 678 14 593 3.18e-85 286
Msa0846340 MtrunA17_Chr8g0363841 27.656 640 428 10 97 712 9 637 1.50e-80 276
Msa0846340 MtrunA17_Chr2g0296781 28.614 678 437 15 105 760 1 653 6.53e-80 275
Msa0846340 MtrunA17_Chr5g0441581 27.892 631 416 11 105 720 36 642 2.02e-79 273
Msa0846340 MtrunA17_Chr1g0198761 29.420 707 443 17 106 780 52 734 5.70e-79 273
Msa0846340 MtrunA17_Chr3g0082121 29.805 614 390 12 104 700 46 635 7.27e-78 269
Msa0846340 MtrunA17_Chr1g0203721 27.127 623 435 10 107 720 69 681 3.98e-74 262
Msa0846340 MtrunA17_Chr6g0477261 33.724 427 270 5 241 657 22 445 7.24e-74 257
Msa0846340 MtrunA17_Chr1g0207551 29.649 570 366 9 105 657 38 589 3.64e-72 255
Msa0846340 MtrunA17_Chr6g0458391 27.160 567 369 11 105 657 229 765 1.24e-70 250
Msa0846340 MtrunA17_Chr3g0080351 28.045 624 382 13 96 695 71 651 6.60e-70 249
Msa0846340 MtrunA17_Chr1g0196541 29.174 569 374 12 105 657 1 556 1.69e-67 240
Msa0846340 MtrunA17_Chr2g0329031 25.932 617 410 12 88 690 1 584 2.55e-67 240
Msa0846340 MtrunA17_Chr5g0440451 27.083 624 407 13 105 705 47 645 1.09e-63 233
Msa0846340 MtrunA17_Chr5g0448511 29.723 397 271 4 267 658 5 398 6.04e-63 223
Msa0846340 MtrunA17_Chr5g0431001 31.579 418 264 7 106 504 66 480 7.80e-62 219
Msa0846340 MtrunA17_Chr2g0276841 27.200 625 425 14 107 717 76 684 2.42e-61 222
Msa0846340 MtrunA17_Chr3g0118611 29.020 510 328 11 207 705 56 542 5.11e-61 223
Msa0846340 MtrunA17_Chr2g0290391 26.667 660 414 19 105 726 55 682 8.57e-60 218
Msa0846340 MtrunA17_Chr2g0291581 27.592 569 374 12 105 657 75 621 2.42e-59 216
Msa0846340 MtrunA17_Chr2g0287061 27.107 605 390 14 107 705 189 748 8.64e-57 211
Msa0846340 MtrunA17_Chr2g0291591 29.897 485 316 10 102 576 65 535 2.18e-55 202
Msa0846340 MtrunA17_Chr2g0294841 27.304 575 379 14 107 658 51 609 7.07e-55 204
Msa0846340 MtrunA17_Chr1g0164591 32.353 306 191 4 188 487 12 307 2.18e-49 178
Msa0846340 MtrunA17_Chr2g0308841 33.475 236 155 1 432 667 4 237 1.12e-38 145
Msa0846340 MtrunA17_Chr7g0258861 30.877 285 178 4 105 378 14 290 4.93e-37 142
Msa0846340 MtrunA17_Chr1g0149131 34.545 110 67 1 379 483 1 110 6.50e-16 75.1
Msa0846340 MtrunA17_Chr8g0340801 33.945 109 70 1 209 317 1 107 4.08e-14 69.3
Msa0846340 MtrunA17_Chr1g0171741 25.238 210 121 5 15 220 77 254 8.23e-13 69.7
Msa0846340 MtrunA17_Chr6g0451441 26.772 254 163 8 24 265 4 246 6.89e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846340 AT4G38180.1 31.336 651 419 14 23 661 4 638 3.02e-90 305
Msa0846340 AT4G15090.1 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846340 AT4G15090.5 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846340 AT4G15090.3 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846340 AT4G15090.2 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846340 AT4G15090.4 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846340 AT3G22170.2 26.744 688 440 14 52 716 30 676 1.65e-70 251
Msa0846340 AT3G22170.1 26.744 688 440 14 52 716 30 676 1.65e-70 251
Msa0846340 AT2G27110.2 26.403 606 390 11 105 699 53 613 9.10e-64 232
Msa0846340 AT2G27110.1 26.403 606 390 11 105 699 53 613 9.10e-64 232
Msa0846340 AT1G76320.1 27.225 573 374 14 105 660 1 547 4.23e-62 225
Msa0846340 AT1G76320.4 27.225 573 374 14 105 660 1 547 4.23e-62 225
Msa0846340 AT1G76320.2 27.225 573 374 14 105 660 1 547 4.43e-62 225
Msa0846340 AT1G76320.3 27.225 573 374 14 105 660 1 547 4.80e-62 224
Msa0846340 AT5G28530.1 27.903 577 384 11 107 663 61 625 9.13e-62 223
Msa0846340 AT1G52520.1 28.076 577 374 14 105 662 89 643 4.99e-61 222
Msa0846340 AT1G10240.2 26.941 631 419 13 107 717 54 662 9.56e-61 220
Msa0846340 AT1G10240.1 26.941 631 419 13 107 717 54 662 9.56e-61 220
Msa0846340 AT5G28530.3 27.556 577 382 11 107 663 61 621 1.39e-60 220
Msa0846340 AT5G28530.2 27.556 577 382 11 107 663 61 621 1.39e-60 220
Msa0846340 AT3G06250.2 26.446 605 394 11 105 705 194 751 4.03e-60 220
Msa0846340 AT3G06250.1 26.446 605 394 11 105 705 194 751 4.03e-60 220
Msa0846340 AT3G06250.3 26.446 605 394 11 105 705 194 751 4.03e-60 220
Msa0846340 AT2G27110.3 29.861 432 283 6 274 699 51 468 4.34e-60 219
Msa0846340 AT4G19990.3 27.604 576 357 13 107 661 27 563 9.51e-60 219
Msa0846340 AT4G19990.4 27.604 576 357 13 107 661 27 563 9.51e-60 219
Msa0846340 AT4G19990.6 27.257 576 359 12 107 661 27 563 1.02e-59 219
Msa0846340 AT4G19990.2 27.257 576 359 12 107 661 27 563 1.02e-59 219
Msa0846340 AT4G19990.7 27.451 612 375 15 79 661 6 577 1.20e-59 219
Msa0846340 AT4G19990.5 27.604 576 357 13 107 661 27 563 1.27e-59 218
Msa0846340 AT1G80010.1 27.760 616 392 19 80 666 79 670 1.45e-59 218
Msa0846340 AT4G19990.1 30.075 399 271 5 269 661 110 506 5.51e-58 213
Msa0846340 AT5G18960.2 26.073 606 398 13 105 705 215 775 1.67e-56 210
Msa0846340 AT5G18960.1 26.073 606 398 13 105 705 215 775 1.67e-56 210
Msa0846340 AT2G32250.2 26.623 616 368 14 105 697 42 596 1.42e-54 204
Msa0846340 AT2G32250.4 26.623 616 368 14 105 697 42 596 1.42e-54 204
Msa0846340 AT2G32250.6 26.623 616 368 14 105 697 42 596 1.44e-54 204
Msa0846340 AT2G32250.1 26.623 616 368 14 105 697 42 596 1.44e-54 204
Msa0846340 AT2G32250.3 26.623 616 368 14 105 697 42 596 1.44e-54 204
Msa0846340 AT2G32250.8 26.461 616 369 14 105 697 1 555 1.66e-54 204
Msa0846340 AT2G32250.7 26.461 616 369 14 105 697 1 555 1.79e-54 204
Msa0846340 AT2G32250.5 26.623 616 368 14 105 697 42 596 2.10e-54 203
Msa0846340 AT4G38170.1 27.765 425 278 9 306 714 45 456 2.52e-52 193
Msa0846340 AT5G28530.4 24.868 567 351 14 107 663 61 562 6.45e-41 160
Msa0846340 AT5G28530.5 24.515 567 349 14 107 663 61 558 7.51e-40 157

Find 167 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGATCCACCATTATT+TGG 0.155571 5_4:+26235245 None:intergenic
TCAATGTTGATTGTGATATT+TGG 0.171428 5_4:+26235482 None:intergenic
CAAAGGTGATGCCTTGTATT+TGG 0.176136 5_4:+26236991 None:intergenic
CTCTTGCAAATCAGACTTTC+AGG 0.192125 5_4:+26236271 None:intergenic
TGTTCTAATTGTAGAAATAT+TGG 0.215041 5_4:-26235905 Msa0846340:CDS
TGCTACTTTGAGTTACTTCC+AGG 0.237219 5_4:-26237373 Msa0846340:CDS
TCACTCAATTTGCGGTAATT+AGG 0.258248 5_4:+26237570 None:intergenic
CCATCAGTAATCACCGCTTT+TGG 0.302214 5_4:+26237051 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.305560 5_4:+26237212 None:intergenic
CCCATAGTTTCTCAATGTTC+TGG 0.308400 5_4:+26234989 None:intergenic
GTTCTAATTGTAGAAATATT+GGG 0.312624 5_4:-26235904 Msa0846340:CDS
TAACACCATACCCAACATTA+TGG 0.313783 5_4:+26235294 None:intergenic
ATCACTCGCAGCATATTTAC+TGG 0.315239 5_4:+26236018 None:intergenic
ACCTATAGAAAGAACAAGTA+TGG 0.349144 5_4:-26237213 Msa0846340:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 5_4:-26237659 Msa0846340:CDS
TTATAAACCCAAGTCCTTCA+TGG 0.357517 5_4:+26237460 None:intergenic
GCACCAATTCCAGCAAGTTC+TGG 0.360337 5_4:+26235863 None:intergenic
ATGTGACAGATGATGATATA+AGG 0.367162 5_4:-26237914 Msa0846340:CDS
GAGTTTACATTTACAGATGA+TGG 0.367609 5_4:-26237318 Msa0846340:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.368898 5_4:-26237258 Msa0846340:CDS
TAAGAGCGCAAGTGACTATA+AGG 0.371870 5_4:-26236119 Msa0846340:CDS
TTACCCACCTGTTGTTTGAT+AGG 0.378005 5_4:+26236830 None:intergenic
GACTATAAGGAGGCTCTAGA+AGG 0.383571 5_4:-26236106 Msa0846340:CDS
AATGGTGTGACCTGTGACTT+TGG 0.386330 5_4:-26235365 Msa0846340:CDS
TGTAAGAACATGTCATATCT+TGG 0.387474 5_4:-26237508 Msa0846340:CDS
CACTATGGGGTGCCAAATAA+TGG 0.393131 5_4:-26235257 Msa0846340:CDS
ATCCATGTTGTCATACTTCA+TGG 0.394339 5_4:+26236300 None:intergenic
AGATGATGATATAAGGGATA+TGG 0.394914 5_4:-26237907 Msa0846340:CDS
ATCATTCGCAACAAATTTGT+TGG 0.403036 5_4:+26235991 None:intergenic
TCTAACACTGCTCTGCATAC+TGG 0.407068 5_4:-26235185 Msa0846340:CDS
ATATAATTTCACGGATCATC+AGG 0.409639 5_4:-26237427 Msa0846340:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 5_4:-26237278 Msa0846340:CDS
AACAAATACAAGCACTAGAA+AGG 0.422563 5_4:-26235522 Msa0846340:CDS
TGTCCAGAACTTGCTGGAAT+TGG 0.422787 5_4:-26235866 Msa0846340:CDS
AAAGTTTAAAGATGTCAAAA+AGG 0.436388 5_4:-26236521 Msa0846340:CDS
GATTCATTATTAGACTCAAT+AGG 0.441470 5_4:+26235809 None:intergenic
CGCAGAACAATTAGTTCGAA+TGG 0.445789 5_4:+26237698 None:intergenic
TATCAACTTCACTCAATTTG+CGG 0.446828 5_4:+26237562 None:intergenic
AAGGGTGGCCATGAAGGACT+TGG 0.449428 5_4:-26237468 Msa0846340:CDS
GCAAGGGTTAAAATAAAAGA+TGG 0.464290 5_4:-26237405 Msa0846340:CDS
ATACTTGTTCTTTCTATAGG+TGG 0.464692 5_4:+26237215 None:intergenic
GTAAGAACATGTCATATCTT+GGG 0.464989 5_4:-26237507 Msa0846340:CDS
GCGTCAATTAGTATGCAATA+AGG 0.467578 5_4:-26237772 Msa0846340:CDS
AACGCAAAGGAGCTAATTCA+TGG 0.469712 5_4:+26237607 None:intergenic
TTCGAATGGTTAGCGTAGAT+CGG 0.473910 5_4:+26237712 None:intergenic
GAAATATTGGGCACACAATA+CGG 0.476292 5_4:-26235892 Msa0846340:CDS
CAAGGCATCACCTTTGCGCC+TGG 0.476669 5_4:-26236984 Msa0846340:CDS
AATAGCCGTCATGAGGGAAA+TGG 0.477370 5_4:-26236058 Msa0846340:CDS
TTTGAGTTACTTCCAGGGTA+AGG 0.478060 5_4:-26237367 Msa0846340:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 5_4:-26237954 Msa0846340:CDS
CGGACGTGTCCAGAACTTGC+TGG 0.483560 5_4:-26235872 Msa0846340:CDS
TAAATATGCTGCGAGTGATA+AGG 0.485545 5_4:-26236014 Msa0846340:CDS
GCACTGGTATTAGACGTAAG+AGG 0.485831 5_4:-26235601 Msa0846340:CDS
AGCAACGATGTTCGTGCTGA+TGG 0.490740 5_4:-26238026 Msa0846340:CDS
ATGTGAAACGTGATTCTAAT+GGG 0.492055 5_4:-26237806 Msa0846340:CDS
AAAGGACTTATATAATTTCA+CGG 0.493961 5_4:-26237436 Msa0846340:CDS
CACTCTGTAGCAGTGTCAAA+TGG 0.499398 5_4:-26235644 Msa0846340:CDS
CCAAAAGCGGTGATTACTGA+TGG 0.502215 5_4:-26237051 Msa0846340:CDS
AGTGTTAGAATGTGATGAGA+GGG 0.502952 5_4:+26235199 None:intergenic
GTATCACTATATACATCAAA+AGG 0.509968 5_4:+26238173 None:intergenic
CAAGGGTTAAAATAAAAGAT+GGG 0.510385 5_4:-26237404 Msa0846340:CDS
GGTCAAAAGGGTGGCCATGA+AGG 0.510809 5_4:-26237474 Msa0846340:CDS
CCACGGGTTTGAAGTAAGAA+AGG 0.512169 5_4:-26237832 Msa0846340:CDS
TGTGATGAGAGGGTAGTTGT+CGG 0.513549 5_4:+26235209 None:intergenic
GATGTGAAACGTGATTCTAA+TGG 0.514927 5_4:-26237807 Msa0846340:CDS
ATTATCAGTTGAAGAGAATG+TGG 0.515282 5_4:-26236801 Msa0846340:CDS
AGTTTGAATCTGAGTGGAAG+AGG 0.520947 5_4:-26236870 Msa0846340:CDS
AAATGGACATGACAAGGATA+AGG 0.524930 5_4:-26236041 Msa0846340:CDS
AAAGTCTGATTTGCAAGAGA+TGG 0.531904 5_4:-26236267 Msa0846340:CDS
AAGTGCCCCTCGACGAAACA+TGG 0.534361 5_4:+26236177 None:intergenic
ATTTAGTCTTCAACTTGTCA+AGG 0.535025 5_4:+26236383 None:intergenic
ACAAATACAAGCACTAGAAA+GGG 0.535750 5_4:-26235521 Msa0846340:CDS
AGCATTTCGATGCAAATGCC+AGG 0.536176 5_4:+26236966 None:intergenic
GTAGTTGTCGGAGGGAATTG+TGG 0.539742 5_4:+26235221 None:intergenic
CTCCCCTTGATCTTTAGACA+CGG 0.540361 5_4:+26235841 None:intergenic
AAGTTGTGTTTCCAAATACA+AGG 0.544772 5_4:-26237002 Msa0846340:CDS
AAGACAGCCATTGTGCAAGT+TGG 0.545484 5_4:-26235319 Msa0846340:CDS
AGCTAATTCATGGTTGTGAG+AGG 0.545517 5_4:+26237617 None:intergenic
CACTGGTATTAGACGTAAGA+GGG 0.546727 5_4:-26235600 Msa0846340:CDS
ACTTCATGGCACAAATAATG+TGG 0.547507 5_4:+26236314 None:intergenic
CAAAAGCGGTGATTACTGAT+GGG 0.550752 5_4:-26237050 Msa0846340:CDS
TTGACCTATCAAACAACAGG+TGG 0.553778 5_4:-26236834 Msa0846340:CDS
TCGTCATTTGCCTCCCAAGA+AGG 0.555407 5_4:-26236217 Msa0846340:CDS
GGTGCCGTGTCTAAAGATCA+AGG 0.555556 5_4:-26235845 Msa0846340:CDS
GTTTGAATCTGAGTGGAAGA+GGG 0.557830 5_4:-26236869 Msa0846340:CDS
CAGTGTTAGAATGTGATGAG+AGG 0.563750 5_4:+26235198 None:intergenic
TTCATCATTACCTTCTTGGG+AGG 0.565482 5_4:+26236207 None:intergenic
GTCTAAAGATCAAGGGGAGA+AGG 0.569529 5_4:-26235837 Msa0846340:CDS
CAAGATGTTGAGAAAAGCAC+TGG 0.573269 5_4:-26235617 Msa0846340:CDS
CCTTTGACATTCACCATCAG+TGG 0.574175 5_4:+26235968 None:intergenic
TATTGTTTGCAAAATACCAC+GGG 0.576217 5_4:-26237848 Msa0846340:CDS
GTGGAATTTAACCATGGTAA+TGG 0.576772 5_4:-26237990 Msa0846340:CDS
GCACAAATAATGTGGGAACA+TGG 0.578248 5_4:+26236322 None:intergenic
GATGCAAATGCCAGGCGCAA+AGG 0.578385 5_4:+26236974 None:intergenic
CACTGAACAAGATGAAGATG+AGG 0.580349 5_4:-26236470 Msa0846340:CDS
TGTGACAGATGATGATATAA+GGG 0.581249 5_4:-26237913 Msa0846340:CDS
AAATGACCATGTTTCGTCGA+GGG 0.581274 5_4:-26236183 Msa0846340:CDS
GCTAATTCATGGTTGTGAGA+GGG 0.581523 5_4:+26237618 None:intergenic
TATCAGTATCAGCCTTACCC+TGG 0.582368 5_4:+26237355 None:intergenic
TCAATTAGTATGCAATAAGG+AGG 0.584633 5_4:-26237769 Msa0846340:CDS
AATGACCATGTTTCGTCGAG+GGG 0.585541 5_4:-26236182 Msa0846340:CDS
GCAAGTTGGAACCATAATGT+TGG 0.585606 5_4:-26235305 Msa0846340:CDS
TAAGATAAATAGCCGTCATG+AGG 0.585792 5_4:-26236065 Msa0846340:CDS
AGGGTGGCCATGAAGGACTT+GGG 0.586883 5_4:-26237467 Msa0846340:CDS
GAAGCTTCAAAGATATTCAC+CGG 0.587720 5_4:-26236547 Msa0846340:CDS
AAGATAAATAGCCGTCATGA+GGG 0.587755 5_4:-26236064 Msa0846340:CDS
CTATTGTTTGCAAAATACCA+CGG 0.588377 5_4:-26237849 Msa0846340:CDS
ATGAGAGGGTAGTTGTCGGA+GGG 0.591320 5_4:+26235213 None:intergenic
CATGTCCATTTCCCTCATGA+CGG 0.591948 5_4:+26236053 None:intergenic
ATTTCACGGATCATCAGGCA+AGG 0.592596 5_4:-26237422 Msa0846340:CDS
TGGAACCATAATGTTGGGTA+TGG 0.594448 5_4:-26235299 Msa0846340:CDS
CTTCATGGCACAAATAATGT+GGG 0.594948 5_4:+26236315 None:intergenic
GAACAAGATGAAGATGAGGA+TGG 0.597000 5_4:-26236466 Msa0846340:CDS
TATGAGTGCGTTGAAGAATG+TGG 0.597255 5_4:-26235047 Msa0846340:CDS
GTGCCGTGTCTAAAGATCAA+GGG 0.598632 5_4:-26235844 Msa0846340:CDS
CAAGTTGGAACCATAATGTT+GGG 0.599464 5_4:-26235304 Msa0846340:CDS
GTCAATGCAGTTGTCAGCAT+AGG 0.607551 5_4:+26236583 None:intergenic
ATATAGTGATACAGATGAGG+TGG 0.607738 5_4:-26238162 Msa0846340:CDS
GCTACTTTGAGTTACTTCCA+GGG 0.608783 5_4:-26237372 Msa0846340:CDS
CTGAAAAGTTTGAATCTGAG+TGG 0.609008 5_4:-26236876 Msa0846340:CDS
AAACATCGCAGTGACTATTG+TGG 0.611836 5_4:-26235013 Msa0846340:CDS
GACACTGATAGTGATACAGA+TGG 0.614810 5_4:-26238116 Msa0846340:CDS
GTTGATAAACAAGTTGCTAG+TGG 0.617676 5_4:-26237546 Msa0846340:CDS
ACTATAAGGAGGCTCTAGAA+GGG 0.618361 5_4:-26236105 Msa0846340:CDS
TGATAGTGATACAGATGGGG+TGG 0.618742 5_4:-26238111 Msa0846340:CDS
AAGGGTTAAAATAAAAGATG+GGG 0.619179 5_4:-26237403 Msa0846340:CDS
GATGAGAGGGTAGTTGTCGG+AGG 0.619255 5_4:+26235212 None:intergenic
AAATGGTTGTTTCTCCATGG+TGG 0.622494 5_4:+26237160 None:intergenic
CCACTGATGGTGAATGTCAA+AGG 0.624002 5_4:-26235968 Msa0846340:CDS
TTATCAGTTGAAGAGAATGT+GGG 0.625742 5_4:-26236800 Msa0846340:CDS
TATGGTTCCAACTTGCACAA+TGG 0.627946 5_4:+26235312 None:intergenic
CAATGTTTCGAATTATACAC+CGG 0.631288 5_4:-26235156 Msa0846340:intron
ATCAAATGCACAAAACGCAA+AGG 0.634035 5_4:+26237594 None:intergenic
TGCCGTGTCTAAAGATCAAG+GGG 0.636132 5_4:-26235843 Msa0846340:CDS
TTTCACGGATCATCAGGCAA+GGG 0.637022 5_4:-26237421 Msa0846340:CDS
AAAAGCGGTGATTACTGATG+GGG 0.637407 5_4:-26237049 Msa0846340:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 5_4:-26237174 Msa0846340:CDS
AGAACGACATCAATCTGTGA+AGG 0.639278 5_4:-26236739 Msa0846340:CDS
CCTTTCTTACTTCAAACCCG+TGG 0.639832 5_4:+26237832 None:intergenic
CATTGCAAACACCATTACCA+TGG 0.642035 5_4:+26237979 None:intergenic
TATGGGGTGCCAAATAATGG+TGG 0.646881 5_4:-26235254 Msa0846340:CDS
AATGGTGTTTGCAATGAGCA+AGG 0.648235 5_4:-26237972 Msa0846340:CDS
AACAATAGAGACATACAAGT+GGG 0.649289 5_4:-26237112 Msa0846340:CDS
AAAATGACCATGTTTCGTCG+AGG 0.652304 5_4:-26236184 Msa0846340:CDS
TGACCTATCAAACAACAGGT+GGG 0.653955 5_4:-26236833 Msa0846340:CDS
TGAGGGAAATGGACATGACA+AGG 0.654599 5_4:-26236047 Msa0846340:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 5_4:-26237971 Msa0846340:CDS
TCTGTAGCAGTGTCAAATGG+TGG 0.657609 5_4:-26235641 Msa0846340:CDS
ACATAGACTATTGAATGCAG+CGG 0.661397 5_4:+26236153 None:intergenic
ACACTGATAGTGATACAGAT+GGG 0.663559 5_4:-26238115 Msa0846340:CDS
CGTGCTGATGGAGATGCAGA+CGG 0.664626 5_4:-26238014 Msa0846340:CDS
AAACAATAGAGACATACAAG+TGG 0.671084 5_4:-26237113 Msa0846340:CDS
TGCCATGAAGTATGACAACA+TGG 0.671427 5_4:-26236302 Msa0846340:CDS
GTATGACAAACATCCAAAAG+CGG 0.671446 5_4:-26237064 Msa0846340:CDS
TGAATGTCAAAGGTGCCCGT+AGG 0.674674 5_4:-26235958 Msa0846340:CDS
CAATTAGTATGCAATAAGGA+GGG 0.675920 5_4:-26237768 Msa0846340:CDS
AATTATGCAAGAAATCCACT+AGG 0.678875 5_4:+26236674 None:intergenic
CATTTGACACTGCTACAGAG+TGG 0.682675 5_4:+26235645 None:intergenic
TGTTGCGAATGATCCACTGA+TGG 0.687875 5_4:-26235981 Msa0846340:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 5_4:-26237996 Msa0846340:CDS
GAGCGCAAGTGACTATAAGG+AGG 0.692103 5_4:-26236116 Msa0846340:CDS
TGTATATAGTGATACAGATG+AGG 0.703043 5_4:-26238165 Msa0846340:CDS
TGTAGACGCTTTGAACGCAG+AGG 0.705116 5_4:-26236349 Msa0846340:CDS
GCTAGTGGTCTACATTCACA+AGG 0.709355 5_4:-26237531 Msa0846340:CDS
TGATGGAGATGCAGACGGTG+TGG 0.715462 5_4:-26238009 Msa0846340:CDS
CACTGATAGTGATACAGATG+GGG 0.724418 5_4:-26238114 Msa0846340:CDS
GGATATGGCATTCAACACAG+AGG 0.760715 5_4:-26237892 Msa0846340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATTGTATATGATATTT+TGG - chr5_4:26237484-26237503 Msa0846340:CDS 15.0%
!!! AATTATTTTAATATGCACTA+TGG - chr5_4:26237928-26237947 Msa0846340:CDS 15.0%
!!! ATTATTTTAATATGCACTAT+GGG - chr5_4:26237929-26237948 Msa0846340:CDS 15.0%
!! GATGAAAAAAATAAGAAGAA+TGG - chr5_4:26235462-26235481 Msa0846340:intron 20.0%
!! AAAGGACTTATATAATTTCA+CGG - chr5_4:26235764-26235783 Msa0846340:intron 20.0%
!! AAAGTTTAAAGATGTCAAAA+AGG - chr5_4:26236679-26236698 Msa0846340:CDS 20.0%
!!! ATTTTCAAGGTTAATGTATT+TGG - chr5_4:26236767-26236786 Msa0846340:CDS 20.0%
!! TGTTCTAATTGTAGAAATAT+TGG - chr5_4:26237295-26237314 Msa0846340:CDS 20.0%
!! GTTCTAATTGTAGAAATATT+GGG - chr5_4:26237296-26237315 Msa0846340:CDS 20.0%
!!! TTATTTTAATATGCACTATG+GGG - chr5_4:26237930-26237949 Msa0846340:CDS 20.0%
!!! CTCATAAACTGTTTTAATAT+AGG + chr5_4:26238139-26238158 None:intergenic 20.0%
! GTATCACTATATACATCAAA+AGG + chr5_4:26235030-26235049 None:intergenic 25.0%
! CAAGGGTTAAAATAAAAGAT+GGG - chr5_4:26235796-26235815 Msa0846340:CDS 25.0%
! AAGGGTTAAAATAAAAGATG+GGG - chr5_4:26235797-26235816 Msa0846340:CDS 25.0%
! ATATCCACTAAAAATGACAA+GGG + chr5_4:26236018-26236037 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG + chr5_4:26236019-26236038 None:intergenic 25.0%
! AATTAAAGCACAAGCAAAAA+TGG + chr5_4:26236060-26236079 None:intergenic 25.0%
!!! GGTTCTAAATTTGTTTTCAA+AGG - chr5_4:26236109-26236128 Msa0846340:CDS 25.0%
!! GACATCTTTAAACTTTTTAC+CGG + chr5_4:26236675-26236694 None:intergenic 25.0%
!! CAAAAAAGTTGTAGCTTTTT+CGG - chr5_4:26236790-26236809 Msa0846340:CDS 25.0%
!! TTTTTCATCATTACCTTCTT+GGG + chr5_4:26236999-26237018 None:intergenic 25.0%
!!! TTTTTTCATCATTACCTTCT+TGG + chr5_4:26237000-26237019 None:intergenic 25.0%
! GATTCATTATTAGACTCAAT+AGG + chr5_4:26237394-26237413 None:intergenic 25.0%
!! TCAATGTTGATTGTGATATT+TGG + chr5_4:26237721-26237740 None:intergenic 25.0%
! CAGCAAATATACTATAACAA+AGG + chr5_4:26237754-26237773 None:intergenic 25.0%
!!! TTGTTTTGATTGTTGTAGAA+TGG - chr5_4:26237817-26237836 Msa0846340:CDS 25.0%
! TAAACAATCAAAATACTCAC+CGG + chr5_4:26238066-26238085 None:intergenic 25.0%
TGTATATAGTGATACAGATG+AGG - chr5_4:26235035-26235054 Msa0846340:CDS 30.0%
ATGTGACAGATGATGATATA+AGG - chr5_4:26235286-26235305 Msa0846340:CDS 30.0%
TGTGACAGATGATGATATAA+GGG - chr5_4:26235287-26235306 Msa0846340:CDS 30.0%
AGATGATGATATAAGGGATA+TGG - chr5_4:26235293-26235312 Msa0846340:CDS 30.0%
CTATTGTTTGCAAAATACCA+CGG - chr5_4:26235351-26235370 Msa0846340:CDS 30.0%
TATTGTTTGCAAAATACCAC+GGG - chr5_4:26235352-26235371 Msa0846340:CDS 30.0%
ATGTGAAACGTGATTCTAAT+GGG - chr5_4:26235394-26235413 Msa0846340:intron 30.0%
TCAATTAGTATGCAATAAGG+AGG - chr5_4:26235431-26235450 Msa0846340:intron 30.0%
CAATTAGTATGCAATAAGGA+GGG - chr5_4:26235432-26235451 Msa0846340:intron 30.0%
TATCAACTTCACTCAATTTG+CGG + chr5_4:26235641-26235660 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG - chr5_4:26235692-26235711 Msa0846340:intron 30.0%
GTAAGAACATGTCATATCTT+GGG - chr5_4:26235693-26235712 Msa0846340:intron 30.0%
!!! TCATATCTTGGGTTTTTTGA+TGG - chr5_4:26235704-26235723 Msa0846340:intron 30.0%
!!! CATATCTTGGGTTTTTTGAT+GGG - chr5_4:26235705-26235724 Msa0846340:intron 30.0%
AGGACTTGGGTTTATAAAAA+AGG - chr5_4:26235746-26235765 Msa0846340:intron 30.0%
ATATAATTTCACGGATCATC+AGG - chr5_4:26235773-26235792 Msa0846340:intron 30.0%
GCAAGGGTTAAAATAAAAGA+TGG - chr5_4:26235795-26235814 Msa0846340:intron 30.0%
GAGTTTACATTTACAGATGA+TGG - chr5_4:26235882-26235901 Msa0846340:CDS 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG - chr5_4:26235905-26235924 Msa0846340:CDS 30.0%
ATACTTGTTCTTTCTATAGG+TGG + chr5_4:26235988-26236007 None:intergenic 30.0%
ACCTATAGAAAGAACAAGTA+TGG - chr5_4:26235987-26236006 Msa0846340:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG + chr5_4:26235991-26236010 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG + chr5_4:26236017-26236036 None:intergenic 30.0%
AAACAATAGAGACATACAAG+TGG - chr5_4:26236087-26236106 Msa0846340:CDS 30.0%
AACAATAGAGACATACAAGT+GGG - chr5_4:26236088-26236107 Msa0846340:CDS 30.0%
! TTTTGGATGTTTGTCATACA+TGG + chr5_4:26236135-26236154 None:intergenic 30.0%
AAGTTGTGTTTCCAAATACA+AGG - chr5_4:26236198-26236217 Msa0846340:CDS 30.0%
!! ATTTTGACCTATCAAACAAC+AGG - chr5_4:26236363-26236382 Msa0846340:CDS 30.0%
ATTATCAGTTGAAGAGAATG+TGG - chr5_4:26236399-26236418 Msa0846340:CDS 30.0%
TTATCAGTTGAAGAGAATGT+GGG - chr5_4:26236400-26236419 Msa0846340:CDS 30.0%
TTCTAACACCACACAAAAAA+TGG + chr5_4:26236445-26236464 None:intergenic 30.0%
AATTATGCAAGAAATCCACT+AGG + chr5_4:26236529-26236548 None:intergenic 30.0%
!!! TGGAAACATTGTCATTTTCA+AGG - chr5_4:26236754-26236773 Msa0846340:CDS 30.0%
! ATTTAGTCTTCAACTTGTCA+AGG + chr5_4:26236820-26236839 None:intergenic 30.0%
ATCATTCGCAACAAATTTGT+TGG + chr5_4:26237212-26237231 None:intergenic 30.0%
AACAAATACAAGCACTAGAA+AGG - chr5_4:26237678-26237697 Msa0846340:CDS 30.0%
ACAAATACAAGCACTAGAAA+GGG - chr5_4:26237679-26237698 Msa0846340:CDS 30.0%
AAAACTGATCCACCATTATT+TGG + chr5_4:26237958-26237977 None:intergenic 30.0%
CAATGTTTCGAATTATACAC+CGG - chr5_4:26238044-26238063 Msa0846340:CDS 30.0%
ATATAGTGATACAGATGAGG+TGG - chr5_4:26235038-26235057 Msa0846340:CDS 35.0%
! ACACTGATAGTGATACAGAT+GGG - chr5_4:26235085-26235104 Msa0846340:intron 35.0%
GTGGAATTTAACCATGGTAA+TGG - chr5_4:26235210-26235229 Msa0846340:CDS 35.0%
GATGTGAAACGTGATTCTAA+TGG - chr5_4:26235393-26235412 Msa0846340:intron 35.0%
GCGTCAATTAGTATGCAATA+AGG - chr5_4:26235428-26235447 Msa0846340:intron 35.0%
ATCAAATGCACAAAACGCAA+AGG + chr5_4:26235609-26235628 None:intergenic 35.0%
TCACTCAATTTGCGGTAATT+AGG + chr5_4:26235633-26235652 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG - chr5_4:26235654-26235673 Msa0846340:CDS 35.0%
!!! GGTTTTTTGATGGGTCAAAA+GGG - chr5_4:26235714-26235733 Msa0846340:intron 35.0%
TTATAAACCCAAGTCCTTCA+TGG + chr5_4:26235743-26235762 None:intergenic 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG - chr5_4:26235904-26235923 Msa0846340:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG + chr5_4:26235911-26235930 None:intergenic 35.0%
! AGGTTTGACTATGAGTGTTT+TGG - chr5_4:26235942-26235961 Msa0846340:CDS 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG - chr5_4:26236011-26236030 Msa0846340:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG - chr5_4:26236026-26236045 Msa0846340:CDS 35.0%
!! CAAAAATGGTTGTTTCTCCA+TGG + chr5_4:26236046-26236065 None:intergenic 35.0%
GTATGACAAACATCCAAAAG+CGG - chr5_4:26236136-26236155 Msa0846340:CDS 35.0%
!!! TCAAACTTTTCAGGTGTACA+AGG + chr5_4:26236317-26236336 None:intergenic 35.0%
! CACTCAGATTCAAACTTTTC+AGG + chr5_4:26236326-26236345 None:intergenic 35.0%
CTGAAAAGTTTGAATCTGAG+TGG - chr5_4:26236324-26236343 Msa0846340:CDS 35.0%
GAAGCTTCAAAGATATTCAC+CGG - chr5_4:26236653-26236672 Msa0846340:CDS 35.0%
CTTCATGGCACAAATAATGT+GGG + chr5_4:26236888-26236907 None:intergenic 35.0%
ACTTCATGGCACAAATAATG+TGG + chr5_4:26236889-26236908 None:intergenic 35.0%
ATCCATGTTGTCATACTTCA+TGG + chr5_4:26236903-26236922 None:intergenic 35.0%
! AAAGTCTGATTTGCAAGAGA+TGG - chr5_4:26236933-26236952 Msa0846340:CDS 35.0%
ACATAGACTATTGAATGCAG+CGG + chr5_4:26237050-26237069 None:intergenic 35.0%
TAAGATAAATAGCCGTCATG+AGG - chr5_4:26237135-26237154 Msa0846340:CDS 35.0%
AAGATAAATAGCCGTCATGA+GGG - chr5_4:26237136-26237155 Msa0846340:CDS 35.0%
AAATGGACATGACAAGGATA+AGG - chr5_4:26237159-26237178 Msa0846340:CDS 35.0%
TAAATATGCTGCGAGTGATA+AGG - chr5_4:26237186-26237205 Msa0846340:CDS 35.0%
!!! TGTTGACTTTTTACTCCTAC+GGG + chr5_4:26237260-26237279 None:intergenic 35.0%
!!! GTGTTGACTTTTTACTCCTA+CGG + chr5_4:26237261-26237280 None:intergenic 35.0%
GAAATATTGGGCACACAATA+CGG - chr5_4:26237308-26237327 Msa0846340:CDS 35.0%
TATCATTACTCATAGACAGC+TGG + chr5_4:26237522-26237541 None:intergenic 35.0%
!! TGCTGAAAATTGTGTTGCTT+TGG - chr5_4:26237769-26237788 Msa0846340:CDS 35.0%
! TTTTTCATGTCCAAAGTCAC+AGG + chr5_4:26237848-26237867 None:intergenic 35.0%
! CAAGTTGGAACCATAATGTT+GGG - chr5_4:26237896-26237915 Msa0846340:CDS 35.0%
TAACACCATACCCAACATTA+TGG + chr5_4:26237909-26237928 None:intergenic 35.0%
AGTGTTAGAATGTGATGAGA+GGG + chr5_4:26238004-26238023 None:intergenic 35.0%
! GACACTGATAGTGATACAGA+TGG - chr5_4:26235084-26235103 Msa0846340:intron 40.0%
! CACTGATAGTGATACAGATG+GGG - chr5_4:26235086-26235105 Msa0846340:intron 40.0%
CATTGCAAACACCATTACCA+TGG + chr5_4:26235224-26235243 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG - chr5_4:26235228-26235247 Msa0846340:CDS 40.0%
ATGGTGTTTGCAATGAGCAA+GGG - chr5_4:26235229-26235248 Msa0846340:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG - chr5_4:26235246-26235265 Msa0846340:CDS 40.0%
TTCGAATGGTTAGCGTAGAT+CGG + chr5_4:26235491-26235510 None:intergenic 40.0%
CGCAGAACAATTAGTTCGAA+TGG + chr5_4:26235505-26235524 None:intergenic 40.0%
ACGACTTTGTTCGTACGATT+TGG - chr5_4:26235541-26235560 Msa0846340:CDS 40.0%
GCTAATTCATGGTTGTGAGA+GGG + chr5_4:26235585-26235604 None:intergenic 40.0%
AGCTAATTCATGGTTGTGAG+AGG + chr5_4:26235586-26235605 None:intergenic 40.0%
AACGCAAAGGAGCTAATTCA+TGG + chr5_4:26235596-26235615 None:intergenic 40.0%
!!! GGGTTTTTTGATGGGTCAAA+AGG - chr5_4:26235713-26235732 Msa0846340:intron 40.0%
!! TTTTTGATGGGTCAAAAGGG+TGG - chr5_4:26235717-26235736 Msa0846340:intron 40.0%
!! TGCTACTTTGAGTTACTTCC+AGG - chr5_4:26235827-26235846 Msa0846340:CDS 40.0%
! GCTACTTTGAGTTACTTCCA+GGG - chr5_4:26235828-26235847 Msa0846340:CDS 40.0%
! TTTGAGTTACTTCCAGGGTA+AGG - chr5_4:26235833-26235852 Msa0846340:CDS 40.0%
TTTGGGCAGATTCTACTAGT+AGG - chr5_4:26235922-26235941 Msa0846340:CDS 40.0%
!! AAATGGTTGTTTCTCCATGG+TGG + chr5_4:26236043-26236062 None:intergenic 40.0%
CAAAAGCGGTGATTACTGAT+GGG - chr5_4:26236150-26236169 Msa0846340:CDS 40.0%
AAAAGCGGTGATTACTGATG+GGG - chr5_4:26236151-26236170 Msa0846340:CDS 40.0%
CAAAGGTGATGCCTTGTATT+TGG + chr5_4:26236212-26236231 None:intergenic 40.0%
AGTTTGAATCTGAGTGGAAG+AGG - chr5_4:26236330-26236349 Msa0846340:CDS 40.0%
GTTTGAATCTGAGTGGAAGA+GGG - chr5_4:26236331-26236350 Msa0846340:CDS 40.0%
TTGACCTATCAAACAACAGG+TGG - chr5_4:26236366-26236385 Msa0846340:CDS 40.0%
TGACCTATCAAACAACAGGT+GGG - chr5_4:26236367-26236386 Msa0846340:CDS 40.0%
! TTACCCACCTGTTGTTTGAT+AGG + chr5_4:26236373-26236392 None:intergenic 40.0%
!!! ATGCGAGACCATTTTTTGTG+TGG - chr5_4:26236434-26236453 Msa0846340:CDS 40.0%
AGAACGACATCAATCTGTGA+AGG - chr5_4:26236461-26236480 Msa0846340:CDS 40.0%
!!! CCACTAGGCTGTTTTTGTAT+CGG + chr5_4:26236514-26236533 None:intergenic 40.0%
AGATGTCAAAAAGGCGATAG+AGG - chr5_4:26236688-26236707 Msa0846340:CDS 40.0%
CACTGAACAAGATGAAGATG+AGG - chr5_4:26236730-26236749 Msa0846340:CDS 40.0%
GAACAAGATGAAGATGAGGA+TGG - chr5_4:26236734-26236753 Msa0846340:CDS 40.0%
GCACAAATAATGTGGGAACA+TGG + chr5_4:26236881-26236900 None:intergenic 40.0%
TGCCATGAAGTATGACAACA+TGG - chr5_4:26236898-26236917 Msa0846340:CDS 40.0%
CTCTTGCAAATCAGACTTTC+AGG + chr5_4:26236932-26236951 None:intergenic 40.0%
TTCATCATTACCTTCTTGGG+AGG + chr5_4:26236996-26237015 None:intergenic 40.0%
AAAATGACCATGTTTCGTCG+AGG - chr5_4:26237016-26237035 Msa0846340:CDS 40.0%
AAATGACCATGTTTCGTCGA+GGG - chr5_4:26237017-26237036 Msa0846340:CDS 40.0%
! TAAGAGCGCAAGTGACTATA+AGG - chr5_4:26237081-26237100 Msa0846340:CDS 40.0%
!! ACTATAAGGAGGCTCTAGAA+GGG - chr5_4:26237095-26237114 Msa0846340:CDS 40.0%
ATCACTCGCAGCATATTTAC+TGG + chr5_4:26237185-26237204 None:intergenic 40.0%
GGAGTAAAAAGTCAACACTG+AGG - chr5_4:26237263-26237282 Msa0846340:CDS 40.0%
! CAAGATGTTGAGAAAAGCAC+TGG - chr5_4:26237583-26237602 Msa0846340:CDS 40.0%
CACTGGTATTAGACGTAAGA+GGG - chr5_4:26237600-26237619 Msa0846340:CDS 40.0%
TATGGTTCCAACTTGCACAA+TGG + chr5_4:26237891-26237910 None:intergenic 40.0%
! GCAAGTTGGAACCATAATGT+TGG - chr5_4:26237895-26237914 Msa0846340:CDS 40.0%
TGGAACCATAATGTTGGGTA+TGG - chr5_4:26237901-26237920 Msa0846340:CDS 40.0%
CAGTGTTAGAATGTGATGAG+AGG + chr5_4:26238005-26238024 None:intergenic 40.0%
TATGAGTGCGTTGAAGAATG+TGG - chr5_4:26238153-26238172 Msa0846340:CDS 40.0%
AAACATCGCAGTGACTATTG+TGG - chr5_4:26238187-26238206 Msa0846340:CDS 40.0%
! TGATAGTGATACAGATGGGG+TGG - chr5_4:26235089-26235108 Msa0846340:intron 45.0%
GACGGTGTGGAATTTAACCA+TGG - chr5_4:26235204-26235223 Msa0846340:CDS 45.0%
GGATATGGCATTCAACACAG+AGG - chr5_4:26235308-26235327 Msa0846340:CDS 45.0%
CCTTTCTTACTTCAAACCCG+TGG + chr5_4:26235371-26235390 None:intergenic 45.0%
! CCACGGGTTTGAAGTAAGAA+AGG - chr5_4:26235368-26235387 Msa0846340:CDS 45.0%
GCTAGTGGTCTACATTCACA+AGG - chr5_4:26235669-26235688 Msa0846340:CDS 45.0%
ATTTCACGGATCATCAGGCA+AGG - chr5_4:26235778-26235797 Msa0846340:intron 45.0%
TTTCACGGATCATCAGGCAA+GGG - chr5_4:26235779-26235798 Msa0846340:intron 45.0%
TATCAGTATCAGCCTTACCC+TGG + chr5_4:26235848-26235867 None:intergenic 45.0%
! CCATCAGTAATCACCGCTTT+TGG + chr5_4:26236152-26236171 None:intergenic 45.0%
CCAAAAGCGGTGATTACTGA+TGG - chr5_4:26236149-26236168 Msa0846340:CDS 45.0%
AGCATTTCGATGCAAATGCC+AGG + chr5_4:26236237-26236256 None:intergenic 45.0%
CCGATACAAAAACAGCCTAG+TGG - chr5_4:26236511-26236530 Msa0846340:CDS 45.0%
GTCAATGCAGTTGTCAGCAT+AGG + chr5_4:26236620-26236639 None:intergenic 45.0%
AATGACCATGTTTCGTCGAG+GGG - chr5_4:26237018-26237037 Msa0846340:CDS 45.0%
!! GACTATAAGGAGGCTCTAGA+AGG - chr5_4:26237094-26237113 Msa0846340:CDS 45.0%
AATAGCCGTCATGAGGGAAA+TGG - chr5_4:26237142-26237161 Msa0846340:CDS 45.0%
CATGTCCATTTCCCTCATGA+CGG + chr5_4:26237150-26237169 None:intergenic 45.0%
TGAGGGAAATGGACATGACA+AGG - chr5_4:26237153-26237172 Msa0846340:CDS 45.0%
TGTTGCGAATGATCCACTGA+TGG - chr5_4:26237219-26237238 Msa0846340:CDS 45.0%
CCTTTGACATTCACCATCAG+TGG + chr5_4:26237235-26237254 None:intergenic 45.0%
! CCACTGATGGTGAATGTCAA+AGG - chr5_4:26237232-26237251 Msa0846340:CDS 45.0%
!! TGTCCAGAACTTGCTGGAAT+TGG - chr5_4:26237334-26237353 Msa0846340:CDS 45.0%
GTGCCGTGTCTAAAGATCAA+GGG - chr5_4:26237356-26237375 Msa0846340:CDS 45.0%
TGCCGTGTCTAAAGATCAAG+GGG - chr5_4:26237357-26237376 Msa0846340:CDS 45.0%
CTCCCCTTGATCTTTAGACA+CGG + chr5_4:26237362-26237381 None:intergenic 45.0%
GTCTAAAGATCAAGGGGAGA+AGG - chr5_4:26237363-26237382 Msa0846340:CDS 45.0%
CATTTGACACTGCTACAGAG+TGG + chr5_4:26237558-26237577 None:intergenic 45.0%
CACTCTGTAGCAGTGTCAAA+TGG - chr5_4:26237556-26237575 Msa0846340:CDS 45.0%
TCTGTAGCAGTGTCAAATGG+TGG - chr5_4:26237559-26237578 Msa0846340:CDS 45.0%
! GCACTGGTATTAGACGTAAG+AGG - chr5_4:26237599-26237618 Msa0846340:CDS 45.0%
AATGGTGTGACCTGTGACTT+TGG - chr5_4:26237835-26237854 Msa0846340:CDS 45.0%
AAGACAGCCATTGTGCAAGT+TGG - chr5_4:26237881-26237900 Msa0846340:CDS 45.0%
! CACTATGGGGTGCCAAATAA+TGG - chr5_4:26237943-26237962 Msa0846340:CDS 45.0%
! TATGGGGTGCCAAATAATGG+TGG - chr5_4:26237946-26237965 Msa0846340:CDS 45.0%
TGTGATGAGAGGGTAGTTGT+CGG + chr5_4:26237994-26238013 None:intergenic 45.0%
TCTAACACTGCTCTGCATAC+TGG - chr5_4:26238015-26238034 Msa0846340:CDS 45.0%
AGCAACGATGTTCGTGCTGA+TGG - chr5_4:26235174-26235193 Msa0846340:CDS 50.0%
! TGTAGACGCTTTGAACGCAG+AGG - chr5_4:26236851-26236870 Msa0846340:CDS 50.0%
TCGTCATTTGCCTCCCAAGA+AGG - chr5_4:26236983-26237002 Msa0846340:CDS 50.0%
GAGCGCAAGTGACTATAAGG+AGG - chr5_4:26237084-26237103 Msa0846340:CDS 50.0%
!! TGAATGTCAAAGGTGCCCGT+AGG - chr5_4:26237242-26237261 Msa0846340:CDS 50.0%
GCACCAATTCCAGCAAGTTC+TGG + chr5_4:26237340-26237359 None:intergenic 50.0%
! GGTGCCGTGTCTAAAGATCA+AGG - chr5_4:26237355-26237374 Msa0846340:CDS 50.0%
GTAGTTGTCGGAGGGAATTG+TGG + chr5_4:26237982-26238001 None:intergenic 50.0%
ATGAGAGGGTAGTTGTCGGA+GGG + chr5_4:26237990-26238009 None:intergenic 50.0%
! CGTGCTGATGGAGATGCAGA+CGG - chr5_4:26235186-26235205 Msa0846340:CDS 55.0%
TGATGGAGATGCAGACGGTG+TGG - chr5_4:26235191-26235210 Msa0846340:CDS 55.0%
GGTCAAAAGGGTGGCCATGA+AGG - chr5_4:26235726-26235745 Msa0846340:intron 55.0%
AAGGGTGGCCATGAAGGACT+TGG - chr5_4:26235732-26235751 Msa0846340:intron 55.0%
AGGGTGGCCATGAAGGACTT+GGG - chr5_4:26235733-26235752 Msa0846340:intron 55.0%
GATGCAAATGCCAGGCGCAA+AGG + chr5_4:26236229-26236248 None:intergenic 55.0%
AAGTGCCCCTCGACGAAACA+TGG + chr5_4:26237026-26237045 None:intergenic 55.0%
GATGAGAGGGTAGTTGTCGG+AGG + chr5_4:26237991-26238010 None:intergenic 55.0%
! CAAGGCATCACCTTTGCGCC+TGG - chr5_4:26236216-26236235 Msa0846340:CDS 60.0%
CGGACGTGTCCAGAACTTGC+TGG - chr5_4:26237328-26237347 Msa0846340:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 26235000 26238222 26235000 ID=Msa0846340;Name=Msa0846340
chr5_4 mRNA 26235000 26238222 26235000 ID=Msa0846340-mRNA-1;Parent=Msa0846340;Name=Msa0846340-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.25|1|1|4|0|983
chr5_4 exon 26235796 26238222 26235796 ID=Msa0846340-mRNA-1:exon:10293;Parent=Msa0846340-mRNA-1
chr5_4 exon 26235478 26235699 26235478 ID=Msa0846340-mRNA-1:exon:10292;Parent=Msa0846340-mRNA-1
chr5_4 exon 26235157 26235387 26235157 ID=Msa0846340-mRNA-1:exon:10291;Parent=Msa0846340-mRNA-1
chr5_4 exon 26235000 26235071 26235000 ID=Msa0846340-mRNA-1:exon:10290;Parent=Msa0846340-mRNA-1
chr5_4 CDS 26235796 26238222 26235796 ID=Msa0846340-mRNA-1:cds;Parent=Msa0846340-mRNA-1
chr5_4 CDS 26235478 26235699 26235478 ID=Msa0846340-mRNA-1:cds;Parent=Msa0846340-mRNA-1
chr5_4 CDS 26235157 26235387 26235157 ID=Msa0846340-mRNA-1:cds;Parent=Msa0846340-mRNA-1
chr5_4 CDS 26235000 26235071 26235000 ID=Msa0846340-mRNA-1:cds;Parent=Msa0846340-mRNA-1
Gene Sequence

>Msa0846340

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTATATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAATAGTGTTAATGATGTTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAGCAACGATGTTCGTGCTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAGATGATGATATAAGGGATATGGCATTCAACACAGAGGATGAAGCTATAAAGTTTTATCTATTGTTTGCAAAATACCACGGGTTTGAAGTAAGAAAGGATGATGTGAAACGTGATTCTAATGGGAACATTATTATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGAAAAAAATAAGAAGAATGGCATCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAATTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTGTTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTGCATTTGATGCCTAATTACCGCAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCACAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATAAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATAAAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAGGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCAATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAAAGTTGTGTTTCCAAATACAAGGCATCACCTTTGCGCCTGGCATTTGCATCGAAATGCTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAAAAATTATCAGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGATACAAAAACAGCCTAGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTGTCTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCACTGAACAAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGTTGTAGCTTTTTCGGTATACCTTGACAAGTTGAAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAGTGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCATTCAATAGTCTATGTGATGTTTCGTGTAAGAGCGCAAGTGACTATAAGGAGGCTCTAGAAGGGATTTATAGTTTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACAAGGATAAGGCCAGTAAATATGCTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACTGAGGACAAGATGTTGTTCTAATTGTAGAAATATTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGCCGTGTCTAAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTAATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATGAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACAAGATGTTGAGAAAAGCACTGGTATTAGACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCTGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTATGGGGTGCCAAATAATGGTGGATCAGTTTTTCCACAATTCCCTCCGACAACTACCCTCTCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTTCGAATTATACACCGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAGAACATTGA
Protein sequence

>Msa0846340

MSTYSEATLPFDVYSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTEDIKVNSSNDVRADGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTDDDIRDMAFNTEDEAIKFYLLFAKYHGFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDEKNKKNGIRSTLTIRTNCSAKFRVVYDFVRTIWRVSVFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIKDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGNVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIKVVFPNTRHHLCAWHLHRNAVQHVKNSKFLEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRWVKKNYQLKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVRYKNSLVDFLHNFERALKEYRHNELLSDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVTEQDEDEDGNIVIFKVNVFGKKVVAFSVYLDKLKTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKSDHISSFASQEGNDEKMTMFRRGALAAAFNSLCDVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDKDKASKYAASDKANKFVANDPLMVNVKGARRSKKSTLRTRCCSNCRNIGHTIRTCPELAGIGAVSKDQGEKASPIESNNESKSLSLSMSNDMNDDIHSVAVSNGGQDVEKSTGIRRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTCDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGVPNNGGSVFPQFPPTTTLSSHSNTALHTGTHNVSNYTPFMSALKNVELLAKHRSDYCGPEH*