AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0846360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846360 MtrunA17_Chr2g0287651 42.816 696 379 6 89 779 63 744 0.0 581
Msa0846360 MtrunA17_Chr1g0203051 34.228 596 369 7 64 644 34 621 8.59e-114 364
Msa0846360 MtrunA17_Chr1g0202341 32.653 588 371 11 100 672 50 627 1.40e-94 314
Msa0846360 MtrunA17_Chr5g0448761 32.105 570 366 9 105 659 64 627 8.26e-91 306
Msa0846360 MtrunA17_Chr2g0324011 29.352 586 396 6 105 678 14 593 3.18e-85 286
Msa0846360 MtrunA17_Chr8g0363841 27.656 640 428 10 97 712 9 637 1.50e-80 276
Msa0846360 MtrunA17_Chr2g0296781 28.614 678 437 15 105 760 1 653 6.53e-80 275
Msa0846360 MtrunA17_Chr5g0441581 27.892 631 416 11 105 720 36 642 2.02e-79 273
Msa0846360 MtrunA17_Chr1g0198761 29.420 707 443 17 106 780 52 734 5.70e-79 273
Msa0846360 MtrunA17_Chr3g0082121 29.805 614 390 12 104 700 46 635 7.27e-78 269
Msa0846360 MtrunA17_Chr1g0203721 27.127 623 435 10 107 720 69 681 3.98e-74 262
Msa0846360 MtrunA17_Chr6g0477261 33.724 427 270 5 241 657 22 445 7.24e-74 257
Msa0846360 MtrunA17_Chr1g0207551 29.649 570 366 9 105 657 38 589 3.64e-72 255
Msa0846360 MtrunA17_Chr6g0458391 27.160 567 369 11 105 657 229 765 1.24e-70 250
Msa0846360 MtrunA17_Chr3g0080351 28.045 624 382 13 96 695 71 651 6.60e-70 249
Msa0846360 MtrunA17_Chr1g0196541 29.174 569 374 12 105 657 1 556 1.69e-67 240
Msa0846360 MtrunA17_Chr2g0329031 25.932 617 410 12 88 690 1 584 2.55e-67 240
Msa0846360 MtrunA17_Chr5g0440451 27.083 624 407 13 105 705 47 645 1.09e-63 233
Msa0846360 MtrunA17_Chr5g0448511 29.723 397 271 4 267 658 5 398 6.04e-63 223
Msa0846360 MtrunA17_Chr5g0431001 31.579 418 264 7 106 504 66 480 7.80e-62 219
Msa0846360 MtrunA17_Chr2g0276841 27.200 625 425 14 107 717 76 684 2.42e-61 222
Msa0846360 MtrunA17_Chr3g0118611 29.020 510 328 11 207 705 56 542 5.11e-61 223
Msa0846360 MtrunA17_Chr2g0290391 26.667 660 414 19 105 726 55 682 8.57e-60 218
Msa0846360 MtrunA17_Chr2g0291581 27.592 569 374 12 105 657 75 621 2.42e-59 216
Msa0846360 MtrunA17_Chr2g0287061 27.107 605 390 14 107 705 189 748 8.64e-57 211
Msa0846360 MtrunA17_Chr2g0291591 29.897 485 316 10 102 576 65 535 2.18e-55 202
Msa0846360 MtrunA17_Chr2g0294841 27.304 575 379 14 107 658 51 609 7.07e-55 204
Msa0846360 MtrunA17_Chr1g0164591 32.353 306 191 4 188 487 12 307 2.18e-49 178
Msa0846360 MtrunA17_Chr2g0308841 33.475 236 155 1 432 667 4 237 1.12e-38 145
Msa0846360 MtrunA17_Chr7g0258861 30.877 285 178 4 105 378 14 290 4.93e-37 142
Msa0846360 MtrunA17_Chr1g0149131 34.545 110 67 1 379 483 1 110 6.50e-16 75.1
Msa0846360 MtrunA17_Chr8g0340801 33.945 109 70 1 209 317 1 107 4.08e-14 69.3
Msa0846360 MtrunA17_Chr1g0171741 25.238 210 121 5 15 220 77 254 8.23e-13 69.7
Msa0846360 MtrunA17_Chr6g0451441 26.772 254 163 8 24 265 4 246 6.89e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846360 AT4G38180.1 31.336 651 419 14 23 661 4 638 3.02e-90 305
Msa0846360 AT4G15090.1 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846360 AT4G15090.5 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846360 AT4G15090.3 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846360 AT4G15090.2 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846360 AT4G15090.4 29.701 670 441 15 53 707 2 656 1.07e-82 286
Msa0846360 AT3G22170.2 26.744 688 440 14 52 716 30 676 1.65e-70 251
Msa0846360 AT3G22170.1 26.744 688 440 14 52 716 30 676 1.65e-70 251
Msa0846360 AT2G27110.2 26.403 606 390 11 105 699 53 613 9.10e-64 232
Msa0846360 AT2G27110.1 26.403 606 390 11 105 699 53 613 9.10e-64 232
Msa0846360 AT1G76320.1 27.225 573 374 14 105 660 1 547 4.23e-62 225
Msa0846360 AT1G76320.4 27.225 573 374 14 105 660 1 547 4.23e-62 225
Msa0846360 AT1G76320.2 27.225 573 374 14 105 660 1 547 4.43e-62 225
Msa0846360 AT1G76320.3 27.225 573 374 14 105 660 1 547 4.80e-62 224
Msa0846360 AT5G28530.1 27.903 577 384 11 107 663 61 625 9.13e-62 223
Msa0846360 AT1G52520.1 28.076 577 374 14 105 662 89 643 4.99e-61 222
Msa0846360 AT1G10240.2 26.941 631 419 13 107 717 54 662 9.56e-61 220
Msa0846360 AT1G10240.1 26.941 631 419 13 107 717 54 662 9.56e-61 220
Msa0846360 AT5G28530.3 27.556 577 382 11 107 663 61 621 1.39e-60 220
Msa0846360 AT5G28530.2 27.556 577 382 11 107 663 61 621 1.39e-60 220
Msa0846360 AT3G06250.2 26.446 605 394 11 105 705 194 751 4.03e-60 220
Msa0846360 AT3G06250.1 26.446 605 394 11 105 705 194 751 4.03e-60 220
Msa0846360 AT3G06250.3 26.446 605 394 11 105 705 194 751 4.03e-60 220
Msa0846360 AT2G27110.3 29.861 432 283 6 274 699 51 468 4.34e-60 219
Msa0846360 AT4G19990.3 27.604 576 357 13 107 661 27 563 9.51e-60 219
Msa0846360 AT4G19990.4 27.604 576 357 13 107 661 27 563 9.51e-60 219
Msa0846360 AT4G19990.6 27.257 576 359 12 107 661 27 563 1.02e-59 219
Msa0846360 AT4G19990.2 27.257 576 359 12 107 661 27 563 1.02e-59 219
Msa0846360 AT4G19990.7 27.451 612 375 15 79 661 6 577 1.20e-59 219
Msa0846360 AT4G19990.5 27.604 576 357 13 107 661 27 563 1.27e-59 218
Msa0846360 AT1G80010.1 27.760 616 392 19 80 666 79 670 1.45e-59 218
Msa0846360 AT4G19990.1 30.075 399 271 5 269 661 110 506 5.51e-58 213
Msa0846360 AT5G18960.2 26.073 606 398 13 105 705 215 775 1.67e-56 210
Msa0846360 AT5G18960.1 26.073 606 398 13 105 705 215 775 1.67e-56 210
Msa0846360 AT2G32250.2 26.623 616 368 14 105 697 42 596 1.42e-54 204
Msa0846360 AT2G32250.4 26.623 616 368 14 105 697 42 596 1.42e-54 204
Msa0846360 AT2G32250.6 26.623 616 368 14 105 697 42 596 1.44e-54 204
Msa0846360 AT2G32250.1 26.623 616 368 14 105 697 42 596 1.44e-54 204
Msa0846360 AT2G32250.3 26.623 616 368 14 105 697 42 596 1.44e-54 204
Msa0846360 AT2G32250.8 26.461 616 369 14 105 697 1 555 1.66e-54 204
Msa0846360 AT2G32250.7 26.461 616 369 14 105 697 1 555 1.79e-54 204
Msa0846360 AT2G32250.5 26.623 616 368 14 105 697 42 596 2.10e-54 203
Msa0846360 AT4G38170.1 27.765 425 278 9 306 714 45 456 2.52e-52 193
Msa0846360 AT5G28530.4 24.868 567 351 14 107 663 61 562 6.45e-41 160
Msa0846360 AT5G28530.5 24.515 567 349 14 107 663 61 558 7.51e-40 157

Find 167 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGATCCACCATTATT+TGG 0.155571 5_4:+26259106 None:intergenic
TCAATGTTGATTGTGATATT+TGG 0.171428 5_4:+26259343 None:intergenic
CAAAGGTGATGCCTTGTATT+TGG 0.176136 5_4:+26260852 None:intergenic
CTCTTGCAAATCAGACTTTC+AGG 0.192125 5_4:+26260132 None:intergenic
TGTTCTAATTGTAGAAATAT+TGG 0.215041 5_4:-26259766 Msa0846360:CDS
TGCTACTTTGAGTTACTTCC+AGG 0.237219 5_4:-26261234 Msa0846360:CDS
TCACTCAATTTGCGGTAATT+AGG 0.258248 5_4:+26261431 None:intergenic
CCATCAGTAATCACCGCTTT+TGG 0.302214 5_4:+26260912 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.305560 5_4:+26261073 None:intergenic
CCCATAGTTTCTCAATGTTC+TGG 0.308400 5_4:+26258850 None:intergenic
GTTCTAATTGTAGAAATATT+GGG 0.312624 5_4:-26259765 Msa0846360:CDS
TAACACCATACCCAACATTA+TGG 0.313783 5_4:+26259155 None:intergenic
ATCACTCGCAGCATATTTAC+TGG 0.315239 5_4:+26259879 None:intergenic
ACCTATAGAAAGAACAAGTA+TGG 0.349144 5_4:-26261074 Msa0846360:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 5_4:-26261520 Msa0846360:CDS
TTATAAACCCAAGTCCTTCA+TGG 0.357517 5_4:+26261321 None:intergenic
GCACCAATTCCAGCAAGTTC+TGG 0.360337 5_4:+26259724 None:intergenic
ATGTGACAGATGATGATATA+AGG 0.367162 5_4:-26261775 Msa0846360:CDS
GAGTTTACATTTACAGATGA+TGG 0.367609 5_4:-26261179 Msa0846360:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.368898 5_4:-26261119 Msa0846360:CDS
TAAGAGCGCAAGTGACTATA+AGG 0.371870 5_4:-26259980 Msa0846360:CDS
TTACCCACCTGTTGTTTGAT+AGG 0.378005 5_4:+26260691 None:intergenic
GACTATAAGGAGGCTCTAGA+AGG 0.383571 5_4:-26259967 Msa0846360:CDS
AATGGTGTGACCTGTGACTT+TGG 0.386330 5_4:-26259226 Msa0846360:CDS
TGTAAGAACATGTCATATCT+TGG 0.387474 5_4:-26261369 Msa0846360:CDS
CACTATGGGGTGCCAAATAA+TGG 0.393131 5_4:-26259118 Msa0846360:CDS
ATCCATGTTGTCATACTTCA+TGG 0.394339 5_4:+26260161 None:intergenic
AGATGATGATATAAGGGATA+TGG 0.394914 5_4:-26261768 Msa0846360:CDS
ATCATTCGCAACAAATTTGT+TGG 0.403036 5_4:+26259852 None:intergenic
TCTAACACTGCTCTGCATAC+TGG 0.407068 5_4:-26259046 Msa0846360:CDS
ATATAATTTCACGGATCATC+AGG 0.409639 5_4:-26261288 Msa0846360:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 5_4:-26261139 Msa0846360:CDS
AACAAATACAAGCACTAGAA+AGG 0.422563 5_4:-26259383 Msa0846360:CDS
TGTCCAGAACTTGCTGGAAT+TGG 0.422787 5_4:-26259727 Msa0846360:CDS
AAAGTTTAAAGATGTCAAAA+AGG 0.436388 5_4:-26260382 Msa0846360:CDS
GATTCATTATTAGACTCAAT+AGG 0.441470 5_4:+26259670 None:intergenic
CGCAGAACAATTAGTTCGAA+TGG 0.445789 5_4:+26261559 None:intergenic
TATCAACTTCACTCAATTTG+CGG 0.446828 5_4:+26261423 None:intergenic
AAGGGTGGCCATGAAGGACT+TGG 0.449428 5_4:-26261329 Msa0846360:CDS
GCAAGGGTTAAAATAAAAGA+TGG 0.464290 5_4:-26261266 Msa0846360:CDS
ATACTTGTTCTTTCTATAGG+TGG 0.464692 5_4:+26261076 None:intergenic
GTAAGAACATGTCATATCTT+GGG 0.464989 5_4:-26261368 Msa0846360:CDS
GCGTCAATTAGTATGCAATA+AGG 0.467578 5_4:-26261633 Msa0846360:CDS
AACGCAAAGGAGCTAATTCA+TGG 0.469712 5_4:+26261468 None:intergenic
TTCGAATGGTTAGCGTAGAT+CGG 0.473910 5_4:+26261573 None:intergenic
GAAATATTGGGCACACAATA+CGG 0.476292 5_4:-26259753 Msa0846360:CDS
CAAGGCATCACCTTTGCGCC+TGG 0.476669 5_4:-26260845 Msa0846360:CDS
AATAGCCGTCATGAGGGAAA+TGG 0.477370 5_4:-26259919 Msa0846360:CDS
TTTGAGTTACTTCCAGGGTA+AGG 0.478060 5_4:-26261228 Msa0846360:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 5_4:-26261815 Msa0846360:CDS
CGGACGTGTCCAGAACTTGC+TGG 0.483560 5_4:-26259733 Msa0846360:CDS
TAAATATGCTGCGAGTGATA+AGG 0.485545 5_4:-26259875 Msa0846360:CDS
GCACTGGTATTAGACGTAAG+AGG 0.485831 5_4:-26259462 Msa0846360:CDS
AGCAACGATGTTCGTGCTGA+TGG 0.490740 5_4:-26261887 Msa0846360:CDS
ATGTGAAACGTGATTCTAAT+GGG 0.492055 5_4:-26261667 Msa0846360:CDS
AAAGGACTTATATAATTTCA+CGG 0.493961 5_4:-26261297 Msa0846360:CDS
CACTCTGTAGCAGTGTCAAA+TGG 0.499398 5_4:-26259505 Msa0846360:CDS
CCAAAAGCGGTGATTACTGA+TGG 0.502215 5_4:-26260912 Msa0846360:CDS
AGTGTTAGAATGTGATGAGA+GGG 0.502952 5_4:+26259060 None:intergenic
GTATCACTATATACATCAAA+AGG 0.509968 5_4:+26262034 None:intergenic
CAAGGGTTAAAATAAAAGAT+GGG 0.510385 5_4:-26261265 Msa0846360:CDS
GGTCAAAAGGGTGGCCATGA+AGG 0.510809 5_4:-26261335 Msa0846360:CDS
CCACGGGTTTGAAGTAAGAA+AGG 0.512169 5_4:-26261693 Msa0846360:CDS
TGTGATGAGAGGGTAGTTGT+CGG 0.513549 5_4:+26259070 None:intergenic
GATGTGAAACGTGATTCTAA+TGG 0.514927 5_4:-26261668 Msa0846360:CDS
ATTATCAGTTGAAGAGAATG+TGG 0.515282 5_4:-26260662 Msa0846360:CDS
AGTTTGAATCTGAGTGGAAG+AGG 0.520947 5_4:-26260731 Msa0846360:CDS
AAATGGACATGACAAGGATA+AGG 0.524930 5_4:-26259902 Msa0846360:CDS
AAAGTCTGATTTGCAAGAGA+TGG 0.531904 5_4:-26260128 Msa0846360:CDS
AAGTGCCCCTCGACGAAACA+TGG 0.534361 5_4:+26260038 None:intergenic
ATTTAGTCTTCAACTTGTCA+AGG 0.535025 5_4:+26260244 None:intergenic
ACAAATACAAGCACTAGAAA+GGG 0.535750 5_4:-26259382 Msa0846360:CDS
AGCATTTCGATGCAAATGCC+AGG 0.536176 5_4:+26260827 None:intergenic
GTAGTTGTCGGAGGGAATTG+TGG 0.539742 5_4:+26259082 None:intergenic
CTCCCCTTGATCTTTAGACA+CGG 0.540361 5_4:+26259702 None:intergenic
AAGTTGTGTTTCCAAATACA+AGG 0.544772 5_4:-26260863 Msa0846360:CDS
AAGACAGCCATTGTGCAAGT+TGG 0.545484 5_4:-26259180 Msa0846360:CDS
AGCTAATTCATGGTTGTGAG+AGG 0.545517 5_4:+26261478 None:intergenic
CACTGGTATTAGACGTAAGA+GGG 0.546727 5_4:-26259461 Msa0846360:CDS
ACTTCATGGCACAAATAATG+TGG 0.547507 5_4:+26260175 None:intergenic
CAAAAGCGGTGATTACTGAT+GGG 0.550752 5_4:-26260911 Msa0846360:CDS
TTGACCTATCAAACAACAGG+TGG 0.553778 5_4:-26260695 Msa0846360:CDS
TCGTCATTTGCCTCCCAAGA+AGG 0.555407 5_4:-26260078 Msa0846360:CDS
GGTGCCGTGTCTAAAGATCA+AGG 0.555556 5_4:-26259706 Msa0846360:CDS
GTTTGAATCTGAGTGGAAGA+GGG 0.557830 5_4:-26260730 Msa0846360:CDS
CAGTGTTAGAATGTGATGAG+AGG 0.563750 5_4:+26259059 None:intergenic
TTCATCATTACCTTCTTGGG+AGG 0.565482 5_4:+26260068 None:intergenic
GTCTAAAGATCAAGGGGAGA+AGG 0.569529 5_4:-26259698 Msa0846360:CDS
CAAGATGTTGAGAAAAGCAC+TGG 0.573269 5_4:-26259478 Msa0846360:CDS
CCTTTGACATTCACCATCAG+TGG 0.574175 5_4:+26259829 None:intergenic
TATTGTTTGCAAAATACCAC+GGG 0.576217 5_4:-26261709 Msa0846360:CDS
GTGGAATTTAACCATGGTAA+TGG 0.576772 5_4:-26261851 Msa0846360:CDS
GCACAAATAATGTGGGAACA+TGG 0.578248 5_4:+26260183 None:intergenic
GATGCAAATGCCAGGCGCAA+AGG 0.578385 5_4:+26260835 None:intergenic
CACTGAACAAGATGAAGATG+AGG 0.580349 5_4:-26260331 Msa0846360:CDS
TGTGACAGATGATGATATAA+GGG 0.581249 5_4:-26261774 Msa0846360:CDS
AAATGACCATGTTTCGTCGA+GGG 0.581274 5_4:-26260044 Msa0846360:CDS
GCTAATTCATGGTTGTGAGA+GGG 0.581523 5_4:+26261479 None:intergenic
TATCAGTATCAGCCTTACCC+TGG 0.582368 5_4:+26261216 None:intergenic
TCAATTAGTATGCAATAAGG+AGG 0.584633 5_4:-26261630 Msa0846360:CDS
AATGACCATGTTTCGTCGAG+GGG 0.585541 5_4:-26260043 Msa0846360:CDS
GCAAGTTGGAACCATAATGT+TGG 0.585606 5_4:-26259166 Msa0846360:CDS
TAAGATAAATAGCCGTCATG+AGG 0.585792 5_4:-26259926 Msa0846360:CDS
AGGGTGGCCATGAAGGACTT+GGG 0.586883 5_4:-26261328 Msa0846360:CDS
GAAGCTTCAAAGATATTCAC+CGG 0.587720 5_4:-26260408 Msa0846360:CDS
AAGATAAATAGCCGTCATGA+GGG 0.587755 5_4:-26259925 Msa0846360:CDS
CTATTGTTTGCAAAATACCA+CGG 0.588377 5_4:-26261710 Msa0846360:CDS
ATGAGAGGGTAGTTGTCGGA+GGG 0.591320 5_4:+26259074 None:intergenic
CATGTCCATTTCCCTCATGA+CGG 0.591948 5_4:+26259914 None:intergenic
ATTTCACGGATCATCAGGCA+AGG 0.592596 5_4:-26261283 Msa0846360:CDS
TGGAACCATAATGTTGGGTA+TGG 0.594448 5_4:-26259160 Msa0846360:CDS
CTTCATGGCACAAATAATGT+GGG 0.594948 5_4:+26260176 None:intergenic
GAACAAGATGAAGATGAGGA+TGG 0.597000 5_4:-26260327 Msa0846360:CDS
TATGAGTGCGTTGAAGAATG+TGG 0.597255 5_4:-26258908 Msa0846360:CDS
GTGCCGTGTCTAAAGATCAA+GGG 0.598632 5_4:-26259705 Msa0846360:CDS
CAAGTTGGAACCATAATGTT+GGG 0.599464 5_4:-26259165 Msa0846360:CDS
GTCAATGCAGTTGTCAGCAT+AGG 0.607551 5_4:+26260444 None:intergenic
ATATAGTGATACAGATGAGG+TGG 0.607738 5_4:-26262023 Msa0846360:CDS
GCTACTTTGAGTTACTTCCA+GGG 0.608783 5_4:-26261233 Msa0846360:CDS
CTGAAAAGTTTGAATCTGAG+TGG 0.609008 5_4:-26260737 Msa0846360:CDS
AAACATCGCAGTGACTATTG+TGG 0.611836 5_4:-26258874 Msa0846360:CDS
GACACTGATAGTGATACAGA+TGG 0.614810 5_4:-26261977 Msa0846360:CDS
GTTGATAAACAAGTTGCTAG+TGG 0.617676 5_4:-26261407 Msa0846360:CDS
ACTATAAGGAGGCTCTAGAA+GGG 0.618361 5_4:-26259966 Msa0846360:CDS
TGATAGTGATACAGATGGGG+TGG 0.618742 5_4:-26261972 Msa0846360:CDS
AAGGGTTAAAATAAAAGATG+GGG 0.619179 5_4:-26261264 Msa0846360:CDS
GATGAGAGGGTAGTTGTCGG+AGG 0.619255 5_4:+26259073 None:intergenic
AAATGGTTGTTTCTCCATGG+TGG 0.622494 5_4:+26261021 None:intergenic
CCACTGATGGTGAATGTCAA+AGG 0.624002 5_4:-26259829 Msa0846360:CDS
TTATCAGTTGAAGAGAATGT+GGG 0.625742 5_4:-26260661 Msa0846360:CDS
TATGGTTCCAACTTGCACAA+TGG 0.627946 5_4:+26259173 None:intergenic
CAATGTTTCGAATTATACAC+CGG 0.631288 5_4:-26259017 Msa0846360:intron
ATCAAATGCACAAAACGCAA+AGG 0.634035 5_4:+26261455 None:intergenic
TGCCGTGTCTAAAGATCAAG+GGG 0.636132 5_4:-26259704 Msa0846360:CDS
TTTCACGGATCATCAGGCAA+GGG 0.637022 5_4:-26261282 Msa0846360:CDS
AAAAGCGGTGATTACTGATG+GGG 0.637407 5_4:-26260910 Msa0846360:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 5_4:-26261035 Msa0846360:CDS
AGAACGACATCAATCTGTGA+AGG 0.639278 5_4:-26260600 Msa0846360:CDS
CCTTTCTTACTTCAAACCCG+TGG 0.639832 5_4:+26261693 None:intergenic
CATTGCAAACACCATTACCA+TGG 0.642035 5_4:+26261840 None:intergenic
TATGGGGTGCCAAATAATGG+TGG 0.646881 5_4:-26259115 Msa0846360:CDS
AATGGTGTTTGCAATGAGCA+AGG 0.648235 5_4:-26261833 Msa0846360:CDS
AACAATAGAGACATACAAGT+GGG 0.649289 5_4:-26260973 Msa0846360:CDS
AAAATGACCATGTTTCGTCG+AGG 0.652304 5_4:-26260045 Msa0846360:CDS
TGACCTATCAAACAACAGGT+GGG 0.653955 5_4:-26260694 Msa0846360:CDS
TGAGGGAAATGGACATGACA+AGG 0.654599 5_4:-26259908 Msa0846360:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 5_4:-26261832 Msa0846360:CDS
TCTGTAGCAGTGTCAAATGG+TGG 0.657609 5_4:-26259502 Msa0846360:CDS
ACATAGACTATTGAATGCAG+CGG 0.661397 5_4:+26260014 None:intergenic
ACACTGATAGTGATACAGAT+GGG 0.663559 5_4:-26261976 Msa0846360:CDS
CGTGCTGATGGAGATGCAGA+CGG 0.664626 5_4:-26261875 Msa0846360:CDS
AAACAATAGAGACATACAAG+TGG 0.671084 5_4:-26260974 Msa0846360:CDS
TGCCATGAAGTATGACAACA+TGG 0.671427 5_4:-26260163 Msa0846360:CDS
GTATGACAAACATCCAAAAG+CGG 0.671446 5_4:-26260925 Msa0846360:CDS
TGAATGTCAAAGGTGCCCGT+AGG 0.674674 5_4:-26259819 Msa0846360:CDS
CAATTAGTATGCAATAAGGA+GGG 0.675920 5_4:-26261629 Msa0846360:CDS
AATTATGCAAGAAATCCACT+AGG 0.678875 5_4:+26260535 None:intergenic
CATTTGACACTGCTACAGAG+TGG 0.682675 5_4:+26259506 None:intergenic
TGTTGCGAATGATCCACTGA+TGG 0.687875 5_4:-26259842 Msa0846360:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 5_4:-26261857 Msa0846360:CDS
GAGCGCAAGTGACTATAAGG+AGG 0.692103 5_4:-26259977 Msa0846360:CDS
TGTATATAGTGATACAGATG+AGG 0.703043 5_4:-26262026 Msa0846360:CDS
TGTAGACGCTTTGAACGCAG+AGG 0.705116 5_4:-26260210 Msa0846360:CDS
GCTAGTGGTCTACATTCACA+AGG 0.709355 5_4:-26261392 Msa0846360:CDS
TGATGGAGATGCAGACGGTG+TGG 0.715462 5_4:-26261870 Msa0846360:CDS
CACTGATAGTGATACAGATG+GGG 0.724418 5_4:-26261975 Msa0846360:CDS
GGATATGGCATTCAACACAG+AGG 0.760715 5_4:-26261753 Msa0846360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATTGTATATGATATTT+TGG - chr5_4:26261345-26261364 Msa0846360:CDS 15.0%
!!! AATTATTTTAATATGCACTA+TGG - chr5_4:26261789-26261808 Msa0846360:CDS 15.0%
!!! ATTATTTTAATATGCACTAT+GGG - chr5_4:26261790-26261809 Msa0846360:CDS 15.0%
!! GATGAAAAAAATAAGAAGAA+TGG - chr5_4:26259323-26259342 Msa0846360:intron 20.0%
!! AAAGGACTTATATAATTTCA+CGG - chr5_4:26259625-26259644 Msa0846360:intron 20.0%
!! AAAGTTTAAAGATGTCAAAA+AGG - chr5_4:26260540-26260559 Msa0846360:CDS 20.0%
!!! ATTTTCAAGGTTAATGTATT+TGG - chr5_4:26260628-26260647 Msa0846360:CDS 20.0%
!! TGTTCTAATTGTAGAAATAT+TGG - chr5_4:26261156-26261175 Msa0846360:CDS 20.0%
!! GTTCTAATTGTAGAAATATT+GGG - chr5_4:26261157-26261176 Msa0846360:CDS 20.0%
!!! TTATTTTAATATGCACTATG+GGG - chr5_4:26261791-26261810 Msa0846360:CDS 20.0%
!!! CTCATAAACTGTTTTAATAT+AGG + chr5_4:26262000-26262019 None:intergenic 20.0%
! GTATCACTATATACATCAAA+AGG + chr5_4:26258891-26258910 None:intergenic 25.0%
! CAAGGGTTAAAATAAAAGAT+GGG - chr5_4:26259657-26259676 Msa0846360:CDS 25.0%
! AAGGGTTAAAATAAAAGATG+GGG - chr5_4:26259658-26259677 Msa0846360:CDS 25.0%
! ATATCCACTAAAAATGACAA+GGG + chr5_4:26259879-26259898 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG + chr5_4:26259880-26259899 None:intergenic 25.0%
! AATTAAAGCACAAGCAAAAA+TGG + chr5_4:26259921-26259940 None:intergenic 25.0%
!!! GGTTCTAAATTTGTTTTCAA+AGG - chr5_4:26259970-26259989 Msa0846360:CDS 25.0%
!! GACATCTTTAAACTTTTTAC+CGG + chr5_4:26260536-26260555 None:intergenic 25.0%
!! CAAAAAAGTTGTAGCTTTTT+CGG - chr5_4:26260651-26260670 Msa0846360:CDS 25.0%
!! TTTTTCATCATTACCTTCTT+GGG + chr5_4:26260860-26260879 None:intergenic 25.0%
!!! TTTTTTCATCATTACCTTCT+TGG + chr5_4:26260861-26260880 None:intergenic 25.0%
! GATTCATTATTAGACTCAAT+AGG + chr5_4:26261255-26261274 None:intergenic 25.0%
!! TCAATGTTGATTGTGATATT+TGG + chr5_4:26261582-26261601 None:intergenic 25.0%
! CAGCAAATATACTATAACAA+AGG + chr5_4:26261615-26261634 None:intergenic 25.0%
!!! TTGTTTTGATTGTTGTAGAA+TGG - chr5_4:26261678-26261697 Msa0846360:CDS 25.0%
! TAAACAATCAAAATACTCAC+CGG + chr5_4:26261927-26261946 None:intergenic 25.0%
TGTATATAGTGATACAGATG+AGG - chr5_4:26258896-26258915 Msa0846360:CDS 30.0%
ATGTGACAGATGATGATATA+AGG - chr5_4:26259147-26259166 Msa0846360:CDS 30.0%
TGTGACAGATGATGATATAA+GGG - chr5_4:26259148-26259167 Msa0846360:CDS 30.0%
AGATGATGATATAAGGGATA+TGG - chr5_4:26259154-26259173 Msa0846360:CDS 30.0%
CTATTGTTTGCAAAATACCA+CGG - chr5_4:26259212-26259231 Msa0846360:CDS 30.0%
TATTGTTTGCAAAATACCAC+GGG - chr5_4:26259213-26259232 Msa0846360:CDS 30.0%
ATGTGAAACGTGATTCTAAT+GGG - chr5_4:26259255-26259274 Msa0846360:intron 30.0%
TCAATTAGTATGCAATAAGG+AGG - chr5_4:26259292-26259311 Msa0846360:intron 30.0%
CAATTAGTATGCAATAAGGA+GGG - chr5_4:26259293-26259312 Msa0846360:intron 30.0%
TATCAACTTCACTCAATTTG+CGG + chr5_4:26259502-26259521 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG - chr5_4:26259553-26259572 Msa0846360:intron 30.0%
GTAAGAACATGTCATATCTT+GGG - chr5_4:26259554-26259573 Msa0846360:intron 30.0%
!!! TCATATCTTGGGTTTTTTGA+TGG - chr5_4:26259565-26259584 Msa0846360:intron 30.0%
!!! CATATCTTGGGTTTTTTGAT+GGG - chr5_4:26259566-26259585 Msa0846360:intron 30.0%
AGGACTTGGGTTTATAAAAA+AGG - chr5_4:26259607-26259626 Msa0846360:intron 30.0%
ATATAATTTCACGGATCATC+AGG - chr5_4:26259634-26259653 Msa0846360:intron 30.0%
GCAAGGGTTAAAATAAAAGA+TGG - chr5_4:26259656-26259675 Msa0846360:intron 30.0%
GAGTTTACATTTACAGATGA+TGG - chr5_4:26259743-26259762 Msa0846360:CDS 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG - chr5_4:26259766-26259785 Msa0846360:CDS 30.0%
ATACTTGTTCTTTCTATAGG+TGG + chr5_4:26259849-26259868 None:intergenic 30.0%
ACCTATAGAAAGAACAAGTA+TGG - chr5_4:26259848-26259867 Msa0846360:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG + chr5_4:26259852-26259871 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG + chr5_4:26259878-26259897 None:intergenic 30.0%
AAACAATAGAGACATACAAG+TGG - chr5_4:26259948-26259967 Msa0846360:CDS 30.0%
AACAATAGAGACATACAAGT+GGG - chr5_4:26259949-26259968 Msa0846360:CDS 30.0%
! TTTTGGATGTTTGTCATACA+TGG + chr5_4:26259996-26260015 None:intergenic 30.0%
AAGTTGTGTTTCCAAATACA+AGG - chr5_4:26260059-26260078 Msa0846360:CDS 30.0%
!! ATTTTGACCTATCAAACAAC+AGG - chr5_4:26260224-26260243 Msa0846360:CDS 30.0%
ATTATCAGTTGAAGAGAATG+TGG - chr5_4:26260260-26260279 Msa0846360:CDS 30.0%
TTATCAGTTGAAGAGAATGT+GGG - chr5_4:26260261-26260280 Msa0846360:CDS 30.0%
TTCTAACACCACACAAAAAA+TGG + chr5_4:26260306-26260325 None:intergenic 30.0%
AATTATGCAAGAAATCCACT+AGG + chr5_4:26260390-26260409 None:intergenic 30.0%
!!! TGGAAACATTGTCATTTTCA+AGG - chr5_4:26260615-26260634 Msa0846360:CDS 30.0%
! ATTTAGTCTTCAACTTGTCA+AGG + chr5_4:26260681-26260700 None:intergenic 30.0%
ATCATTCGCAACAAATTTGT+TGG + chr5_4:26261073-26261092 None:intergenic 30.0%
AACAAATACAAGCACTAGAA+AGG - chr5_4:26261539-26261558 Msa0846360:CDS 30.0%
ACAAATACAAGCACTAGAAA+GGG - chr5_4:26261540-26261559 Msa0846360:CDS 30.0%
AAAACTGATCCACCATTATT+TGG + chr5_4:26261819-26261838 None:intergenic 30.0%
CAATGTTTCGAATTATACAC+CGG - chr5_4:26261905-26261924 Msa0846360:CDS 30.0%
ATATAGTGATACAGATGAGG+TGG - chr5_4:26258899-26258918 Msa0846360:CDS 35.0%
! ACACTGATAGTGATACAGAT+GGG - chr5_4:26258946-26258965 Msa0846360:intron 35.0%
GTGGAATTTAACCATGGTAA+TGG - chr5_4:26259071-26259090 Msa0846360:CDS 35.0%
GATGTGAAACGTGATTCTAA+TGG - chr5_4:26259254-26259273 Msa0846360:intron 35.0%
GCGTCAATTAGTATGCAATA+AGG - chr5_4:26259289-26259308 Msa0846360:intron 35.0%
ATCAAATGCACAAAACGCAA+AGG + chr5_4:26259470-26259489 None:intergenic 35.0%
TCACTCAATTTGCGGTAATT+AGG + chr5_4:26259494-26259513 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG - chr5_4:26259515-26259534 Msa0846360:CDS 35.0%
!!! GGTTTTTTGATGGGTCAAAA+GGG - chr5_4:26259575-26259594 Msa0846360:intron 35.0%
TTATAAACCCAAGTCCTTCA+TGG + chr5_4:26259604-26259623 None:intergenic 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG - chr5_4:26259765-26259784 Msa0846360:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG + chr5_4:26259772-26259791 None:intergenic 35.0%
! AGGTTTGACTATGAGTGTTT+TGG - chr5_4:26259803-26259822 Msa0846360:CDS 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG - chr5_4:26259872-26259891 Msa0846360:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG - chr5_4:26259887-26259906 Msa0846360:CDS 35.0%
!! CAAAAATGGTTGTTTCTCCA+TGG + chr5_4:26259907-26259926 None:intergenic 35.0%
GTATGACAAACATCCAAAAG+CGG - chr5_4:26259997-26260016 Msa0846360:CDS 35.0%
!!! TCAAACTTTTCAGGTGTACA+AGG + chr5_4:26260178-26260197 None:intergenic 35.0%
! CACTCAGATTCAAACTTTTC+AGG + chr5_4:26260187-26260206 None:intergenic 35.0%
CTGAAAAGTTTGAATCTGAG+TGG - chr5_4:26260185-26260204 Msa0846360:CDS 35.0%
GAAGCTTCAAAGATATTCAC+CGG - chr5_4:26260514-26260533 Msa0846360:CDS 35.0%
CTTCATGGCACAAATAATGT+GGG + chr5_4:26260749-26260768 None:intergenic 35.0%
ACTTCATGGCACAAATAATG+TGG + chr5_4:26260750-26260769 None:intergenic 35.0%
ATCCATGTTGTCATACTTCA+TGG + chr5_4:26260764-26260783 None:intergenic 35.0%
! AAAGTCTGATTTGCAAGAGA+TGG - chr5_4:26260794-26260813 Msa0846360:CDS 35.0%
ACATAGACTATTGAATGCAG+CGG + chr5_4:26260911-26260930 None:intergenic 35.0%
TAAGATAAATAGCCGTCATG+AGG - chr5_4:26260996-26261015 Msa0846360:CDS 35.0%
AAGATAAATAGCCGTCATGA+GGG - chr5_4:26260997-26261016 Msa0846360:CDS 35.0%
AAATGGACATGACAAGGATA+AGG - chr5_4:26261020-26261039 Msa0846360:CDS 35.0%
TAAATATGCTGCGAGTGATA+AGG - chr5_4:26261047-26261066 Msa0846360:CDS 35.0%
!!! TGTTGACTTTTTACTCCTAC+GGG + chr5_4:26261121-26261140 None:intergenic 35.0%
!!! GTGTTGACTTTTTACTCCTA+CGG + chr5_4:26261122-26261141 None:intergenic 35.0%
GAAATATTGGGCACACAATA+CGG - chr5_4:26261169-26261188 Msa0846360:CDS 35.0%
TATCATTACTCATAGACAGC+TGG + chr5_4:26261383-26261402 None:intergenic 35.0%
!! TGCTGAAAATTGTGTTGCTT+TGG - chr5_4:26261630-26261649 Msa0846360:CDS 35.0%
! TTTTTCATGTCCAAAGTCAC+AGG + chr5_4:26261709-26261728 None:intergenic 35.0%
! CAAGTTGGAACCATAATGTT+GGG - chr5_4:26261757-26261776 Msa0846360:CDS 35.0%
TAACACCATACCCAACATTA+TGG + chr5_4:26261770-26261789 None:intergenic 35.0%
AGTGTTAGAATGTGATGAGA+GGG + chr5_4:26261865-26261884 None:intergenic 35.0%
! GACACTGATAGTGATACAGA+TGG - chr5_4:26258945-26258964 Msa0846360:intron 40.0%
! CACTGATAGTGATACAGATG+GGG - chr5_4:26258947-26258966 Msa0846360:intron 40.0%
CATTGCAAACACCATTACCA+TGG + chr5_4:26259085-26259104 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG - chr5_4:26259089-26259108 Msa0846360:CDS 40.0%
ATGGTGTTTGCAATGAGCAA+GGG - chr5_4:26259090-26259109 Msa0846360:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG - chr5_4:26259107-26259126 Msa0846360:CDS 40.0%
TTCGAATGGTTAGCGTAGAT+CGG + chr5_4:26259352-26259371 None:intergenic 40.0%
CGCAGAACAATTAGTTCGAA+TGG + chr5_4:26259366-26259385 None:intergenic 40.0%
ACGACTTTGTTCGTACGATT+TGG - chr5_4:26259402-26259421 Msa0846360:CDS 40.0%
GCTAATTCATGGTTGTGAGA+GGG + chr5_4:26259446-26259465 None:intergenic 40.0%
AGCTAATTCATGGTTGTGAG+AGG + chr5_4:26259447-26259466 None:intergenic 40.0%
AACGCAAAGGAGCTAATTCA+TGG + chr5_4:26259457-26259476 None:intergenic 40.0%
!!! GGGTTTTTTGATGGGTCAAA+AGG - chr5_4:26259574-26259593 Msa0846360:intron 40.0%
!! TTTTTGATGGGTCAAAAGGG+TGG - chr5_4:26259578-26259597 Msa0846360:intron 40.0%
!! TGCTACTTTGAGTTACTTCC+AGG - chr5_4:26259688-26259707 Msa0846360:CDS 40.0%
! GCTACTTTGAGTTACTTCCA+GGG - chr5_4:26259689-26259708 Msa0846360:CDS 40.0%
! TTTGAGTTACTTCCAGGGTA+AGG - chr5_4:26259694-26259713 Msa0846360:CDS 40.0%
TTTGGGCAGATTCTACTAGT+AGG - chr5_4:26259783-26259802 Msa0846360:CDS 40.0%
!! AAATGGTTGTTTCTCCATGG+TGG + chr5_4:26259904-26259923 None:intergenic 40.0%
CAAAAGCGGTGATTACTGAT+GGG - chr5_4:26260011-26260030 Msa0846360:CDS 40.0%
AAAAGCGGTGATTACTGATG+GGG - chr5_4:26260012-26260031 Msa0846360:CDS 40.0%
CAAAGGTGATGCCTTGTATT+TGG + chr5_4:26260073-26260092 None:intergenic 40.0%
AGTTTGAATCTGAGTGGAAG+AGG - chr5_4:26260191-26260210 Msa0846360:CDS 40.0%
GTTTGAATCTGAGTGGAAGA+GGG - chr5_4:26260192-26260211 Msa0846360:CDS 40.0%
TTGACCTATCAAACAACAGG+TGG - chr5_4:26260227-26260246 Msa0846360:CDS 40.0%
TGACCTATCAAACAACAGGT+GGG - chr5_4:26260228-26260247 Msa0846360:CDS 40.0%
! TTACCCACCTGTTGTTTGAT+AGG + chr5_4:26260234-26260253 None:intergenic 40.0%
!!! ATGCGAGACCATTTTTTGTG+TGG - chr5_4:26260295-26260314 Msa0846360:CDS 40.0%
AGAACGACATCAATCTGTGA+AGG - chr5_4:26260322-26260341 Msa0846360:CDS 40.0%
!!! CCACTAGGCTGTTTTTGTAT+CGG + chr5_4:26260375-26260394 None:intergenic 40.0%
AGATGTCAAAAAGGCGATAG+AGG - chr5_4:26260549-26260568 Msa0846360:CDS 40.0%
CACTGAACAAGATGAAGATG+AGG - chr5_4:26260591-26260610 Msa0846360:CDS 40.0%
GAACAAGATGAAGATGAGGA+TGG - chr5_4:26260595-26260614 Msa0846360:CDS 40.0%
GCACAAATAATGTGGGAACA+TGG + chr5_4:26260742-26260761 None:intergenic 40.0%
TGCCATGAAGTATGACAACA+TGG - chr5_4:26260759-26260778 Msa0846360:CDS 40.0%
CTCTTGCAAATCAGACTTTC+AGG + chr5_4:26260793-26260812 None:intergenic 40.0%
TTCATCATTACCTTCTTGGG+AGG + chr5_4:26260857-26260876 None:intergenic 40.0%
AAAATGACCATGTTTCGTCG+AGG - chr5_4:26260877-26260896 Msa0846360:CDS 40.0%
AAATGACCATGTTTCGTCGA+GGG - chr5_4:26260878-26260897 Msa0846360:CDS 40.0%
! TAAGAGCGCAAGTGACTATA+AGG - chr5_4:26260942-26260961 Msa0846360:CDS 40.0%
!! ACTATAAGGAGGCTCTAGAA+GGG - chr5_4:26260956-26260975 Msa0846360:CDS 40.0%
ATCACTCGCAGCATATTTAC+TGG + chr5_4:26261046-26261065 None:intergenic 40.0%
GGAGTAAAAAGTCAACACTG+AGG - chr5_4:26261124-26261143 Msa0846360:CDS 40.0%
! CAAGATGTTGAGAAAAGCAC+TGG - chr5_4:26261444-26261463 Msa0846360:CDS 40.0%
CACTGGTATTAGACGTAAGA+GGG - chr5_4:26261461-26261480 Msa0846360:CDS 40.0%
TATGGTTCCAACTTGCACAA+TGG + chr5_4:26261752-26261771 None:intergenic 40.0%
! GCAAGTTGGAACCATAATGT+TGG - chr5_4:26261756-26261775 Msa0846360:CDS 40.0%
TGGAACCATAATGTTGGGTA+TGG - chr5_4:26261762-26261781 Msa0846360:CDS 40.0%
CAGTGTTAGAATGTGATGAG+AGG + chr5_4:26261866-26261885 None:intergenic 40.0%
TATGAGTGCGTTGAAGAATG+TGG - chr5_4:26262014-26262033 Msa0846360:CDS 40.0%
AAACATCGCAGTGACTATTG+TGG - chr5_4:26262048-26262067 Msa0846360:CDS 40.0%
! TGATAGTGATACAGATGGGG+TGG - chr5_4:26258950-26258969 Msa0846360:intron 45.0%
GACGGTGTGGAATTTAACCA+TGG - chr5_4:26259065-26259084 Msa0846360:CDS 45.0%
GGATATGGCATTCAACACAG+AGG - chr5_4:26259169-26259188 Msa0846360:CDS 45.0%
CCTTTCTTACTTCAAACCCG+TGG + chr5_4:26259232-26259251 None:intergenic 45.0%
! CCACGGGTTTGAAGTAAGAA+AGG - chr5_4:26259229-26259248 Msa0846360:CDS 45.0%
GCTAGTGGTCTACATTCACA+AGG - chr5_4:26259530-26259549 Msa0846360:CDS 45.0%
ATTTCACGGATCATCAGGCA+AGG - chr5_4:26259639-26259658 Msa0846360:intron 45.0%
TTTCACGGATCATCAGGCAA+GGG - chr5_4:26259640-26259659 Msa0846360:intron 45.0%
TATCAGTATCAGCCTTACCC+TGG + chr5_4:26259709-26259728 None:intergenic 45.0%
! CCATCAGTAATCACCGCTTT+TGG + chr5_4:26260013-26260032 None:intergenic 45.0%
CCAAAAGCGGTGATTACTGA+TGG - chr5_4:26260010-26260029 Msa0846360:CDS 45.0%
AGCATTTCGATGCAAATGCC+AGG + chr5_4:26260098-26260117 None:intergenic 45.0%
CCGATACAAAAACAGCCTAG+TGG - chr5_4:26260372-26260391 Msa0846360:CDS 45.0%
GTCAATGCAGTTGTCAGCAT+AGG + chr5_4:26260481-26260500 None:intergenic 45.0%
AATGACCATGTTTCGTCGAG+GGG - chr5_4:26260879-26260898 Msa0846360:CDS 45.0%
!! GACTATAAGGAGGCTCTAGA+AGG - chr5_4:26260955-26260974 Msa0846360:CDS 45.0%
AATAGCCGTCATGAGGGAAA+TGG - chr5_4:26261003-26261022 Msa0846360:CDS 45.0%
CATGTCCATTTCCCTCATGA+CGG + chr5_4:26261011-26261030 None:intergenic 45.0%
TGAGGGAAATGGACATGACA+AGG - chr5_4:26261014-26261033 Msa0846360:CDS 45.0%
TGTTGCGAATGATCCACTGA+TGG - chr5_4:26261080-26261099 Msa0846360:CDS 45.0%
CCTTTGACATTCACCATCAG+TGG + chr5_4:26261096-26261115 None:intergenic 45.0%
! CCACTGATGGTGAATGTCAA+AGG - chr5_4:26261093-26261112 Msa0846360:CDS 45.0%
!! TGTCCAGAACTTGCTGGAAT+TGG - chr5_4:26261195-26261214 Msa0846360:CDS 45.0%
GTGCCGTGTCTAAAGATCAA+GGG - chr5_4:26261217-26261236 Msa0846360:CDS 45.0%
TGCCGTGTCTAAAGATCAAG+GGG - chr5_4:26261218-26261237 Msa0846360:CDS 45.0%
CTCCCCTTGATCTTTAGACA+CGG + chr5_4:26261223-26261242 None:intergenic 45.0%
GTCTAAAGATCAAGGGGAGA+AGG - chr5_4:26261224-26261243 Msa0846360:CDS 45.0%
CATTTGACACTGCTACAGAG+TGG + chr5_4:26261419-26261438 None:intergenic 45.0%
CACTCTGTAGCAGTGTCAAA+TGG - chr5_4:26261417-26261436 Msa0846360:CDS 45.0%
TCTGTAGCAGTGTCAAATGG+TGG - chr5_4:26261420-26261439 Msa0846360:CDS 45.0%
! GCACTGGTATTAGACGTAAG+AGG - chr5_4:26261460-26261479 Msa0846360:CDS 45.0%
AATGGTGTGACCTGTGACTT+TGG - chr5_4:26261696-26261715 Msa0846360:CDS 45.0%
AAGACAGCCATTGTGCAAGT+TGG - chr5_4:26261742-26261761 Msa0846360:CDS 45.0%
! CACTATGGGGTGCCAAATAA+TGG - chr5_4:26261804-26261823 Msa0846360:CDS 45.0%
! TATGGGGTGCCAAATAATGG+TGG - chr5_4:26261807-26261826 Msa0846360:CDS 45.0%
TGTGATGAGAGGGTAGTTGT+CGG + chr5_4:26261855-26261874 None:intergenic 45.0%
TCTAACACTGCTCTGCATAC+TGG - chr5_4:26261876-26261895 Msa0846360:CDS 45.0%
AGCAACGATGTTCGTGCTGA+TGG - chr5_4:26259035-26259054 Msa0846360:CDS 50.0%
! TGTAGACGCTTTGAACGCAG+AGG - chr5_4:26260712-26260731 Msa0846360:CDS 50.0%
TCGTCATTTGCCTCCCAAGA+AGG - chr5_4:26260844-26260863 Msa0846360:CDS 50.0%
GAGCGCAAGTGACTATAAGG+AGG - chr5_4:26260945-26260964 Msa0846360:CDS 50.0%
!! TGAATGTCAAAGGTGCCCGT+AGG - chr5_4:26261103-26261122 Msa0846360:CDS 50.0%
GCACCAATTCCAGCAAGTTC+TGG + chr5_4:26261201-26261220 None:intergenic 50.0%
! GGTGCCGTGTCTAAAGATCA+AGG - chr5_4:26261216-26261235 Msa0846360:CDS 50.0%
GTAGTTGTCGGAGGGAATTG+TGG + chr5_4:26261843-26261862 None:intergenic 50.0%
ATGAGAGGGTAGTTGTCGGA+GGG + chr5_4:26261851-26261870 None:intergenic 50.0%
! CGTGCTGATGGAGATGCAGA+CGG - chr5_4:26259047-26259066 Msa0846360:CDS 55.0%
TGATGGAGATGCAGACGGTG+TGG - chr5_4:26259052-26259071 Msa0846360:CDS 55.0%
GGTCAAAAGGGTGGCCATGA+AGG - chr5_4:26259587-26259606 Msa0846360:intron 55.0%
AAGGGTGGCCATGAAGGACT+TGG - chr5_4:26259593-26259612 Msa0846360:intron 55.0%
AGGGTGGCCATGAAGGACTT+GGG - chr5_4:26259594-26259613 Msa0846360:intron 55.0%
GATGCAAATGCCAGGCGCAA+AGG + chr5_4:26260090-26260109 None:intergenic 55.0%
AAGTGCCCCTCGACGAAACA+TGG + chr5_4:26260887-26260906 None:intergenic 55.0%
GATGAGAGGGTAGTTGTCGG+AGG + chr5_4:26261852-26261871 None:intergenic 55.0%
! CAAGGCATCACCTTTGCGCC+TGG - chr5_4:26260077-26260096 Msa0846360:CDS 60.0%
CGGACGTGTCCAGAACTTGC+TGG - chr5_4:26261189-26261208 Msa0846360:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 26258861 26262083 26258861 ID=Msa0846360;Name=Msa0846360
chr5_4 mRNA 26258861 26262083 26258861 ID=Msa0846360-mRNA-1;Parent=Msa0846360;Name=Msa0846360-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.25|1|1|4|0|983
chr5_4 exon 26259657 26262083 26259657 ID=Msa0846360-mRNA-1:exon:10297;Parent=Msa0846360-mRNA-1
chr5_4 exon 26259339 26259560 26259339 ID=Msa0846360-mRNA-1:exon:10296;Parent=Msa0846360-mRNA-1
chr5_4 exon 26259018 26259248 26259018 ID=Msa0846360-mRNA-1:exon:10295;Parent=Msa0846360-mRNA-1
chr5_4 exon 26258861 26258932 26258861 ID=Msa0846360-mRNA-1:exon:10294;Parent=Msa0846360-mRNA-1
chr5_4 CDS 26259657 26262083 26259657 ID=Msa0846360-mRNA-1:cds;Parent=Msa0846360-mRNA-1
chr5_4 CDS 26259339 26259560 26259339 ID=Msa0846360-mRNA-1:cds;Parent=Msa0846360-mRNA-1
chr5_4 CDS 26259018 26259248 26259018 ID=Msa0846360-mRNA-1:cds;Parent=Msa0846360-mRNA-1
chr5_4 CDS 26258861 26258932 26258861 ID=Msa0846360-mRNA-1:cds;Parent=Msa0846360-mRNA-1
Gene Sequence

>Msa0846360

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTATATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAATAGTGTTAATGATGTTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAGCAACGATGTTCGTGCTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAGATGATGATATAAGGGATATGGCATTCAACACAGAGGATGAAGCTATAAAGTTTTATCTATTGTTTGCAAAATACCACGGGTTTGAAGTAAGAAAGGATGATGTGAAACGTGATTCTAATGGGAACATTATTATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGAAAAAAATAAGAAGAATGGCATCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAATTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTGTTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTGCATTTGATGCCTAATTACCGCAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCACAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATAAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATAAAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAGGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCAATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAAAGTTGTGTTTCCAAATACAAGGCATCACCTTTGCGCCTGGCATTTGCATCGAAATGCTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAAAAATTATCAGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGATACAAAAACAGCCTAGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTGTCTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCACTGAACAAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGTTGTAGCTTTTTCGGTATACCTTGACAAGTTGAAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAGTGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCATTCAATAGTCTATGTGATGTTTCGTGTAAGAGCGCAAGTGACTATAAGGAGGCTCTAGAAGGGATTTATAGTTTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACAAGGATAAGGCCAGTAAATATGCTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACTGAGGACAAGATGTTGTTCTAATTGTAGAAATATTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGCCGTGTCTAAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTAATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATGAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACAAGATGTTGAGAAAAGCACTGGTATTAGACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCTGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTATGGGGTGCCAAATAATGGTGGATCAGTTTTTCCACAATTCCCTCCGACAACTACCCTCTCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTTCGAATTATACACCGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAGAACATTGA
Protein sequence

>Msa0846360

MSTYSEATLPFDVYSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTEDIKVNSSNDVRADGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTDDDIRDMAFNTEDEAIKFYLLFAKYHGFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDEKNKKNGIRSTLTIRTNCSAKFRVVYDFVRTIWRVSVFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIKDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGNVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIKVVFPNTRHHLCAWHLHRNAVQHVKNSKFLEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRWVKKNYQLKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVRYKNSLVDFLHNFERALKEYRHNELLSDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVTEQDEDEDGNIVIFKVNVFGKKVVAFSVYLDKLKTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKSDHISSFASQEGNDEKMTMFRRGALAAAFNSLCDVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDKDKASKYAASDKANKFVANDPLMVNVKGARRSKKSTLRTRCCSNCRNIGHTIRTCPELAGIGAVSKDQGEKASPIESNNESKSLSLSMSNDMNDDIHSVAVSNGGQDVEKSTGIRRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTCDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGVPNNGGSVFPQFPPTTTLSSHSNTALHTGTHNVSNYTPFMSALKNVELLAKHRSDYCGPEH*