AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0846540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846540 MtrunA17_Chr5g0418191 93.563 435 25 3 1 434 1 433 0.0 833
Msa0846540 MtrunA17_Chr4g0042831 54.667 450 111 11 14 433 2 388 2.07e-141 409
Msa0846540 MtrunA17_Chr7g0218081 49.414 512 154 14 21 433 14 519 4.51e-141 413
Msa0846540 MtrunA17_Chr5g0445311 47.478 337 149 9 109 430 155 478 2.34e-82 263
Msa0846540 MtrunA17_Chr7g0263531 40.299 402 190 10 24 398 60 438 8.27e-82 258
Msa0846540 MtrunA17_Chr3g0101131 51.064 282 121 6 145 415 235 510 7.80e-81 260
Msa0846540 MtrunA17_Chr3g0079691 43.236 377 140 10 113 416 230 605 3.42e-80 261
Msa0846540 MtrunA17_Chr3g0106491 45.110 317 154 6 79 389 132 434 1.32e-77 249
Msa0846540 MtrunA17_Chr7g0243891 54.251 247 99 5 150 394 213 447 1.51e-77 250
Msa0846540 MtrunA17_Chr7g0249311 48.239 284 100 5 150 387 176 458 8.31e-75 246
Msa0846540 MtrunA17_Chr7g0249311 45.349 86 46 1 321 406 179 263 5.38e-15 77.4
Msa0846540 MtrunA17_Chr5g0432161 51.894 264 93 7 148 389 239 490 9.06e-75 244
Msa0846540 MtrunA17_Chr4g0004911 48.736 277 110 8 108 383 153 398 1.89e-71 233
Msa0846540 MtrunA17_Chr7g0249301 43.581 296 105 7 150 383 59 354 1.74e-65 214
Msa0846540 MtrunA17_Chr5g0447701 39.852 271 134 6 135 397 75 324 4.82e-50 174
Msa0846540 MtrunA17_Chr4g0074001 39.357 249 139 6 144 383 176 421 1.95e-48 172
Msa0846540 MtrunA17_Chr4g0074001 56.250 64 27 1 154 216 360 423 2.61e-16 80.9
Msa0846540 MtrunA17_Chr1g0188941 65.854 82 28 0 299 380 29 110 1.82e-35 127
Msa0846540 MtrunA17_Chr1g0188941 54.839 62 27 1 153 213 51 112 2.72e-18 80.5
Msa0846540 MtrunA17_Chr5g0447711 30.712 267 164 4 121 387 51 296 5.10e-33 126
Msa0846540 MtrunA17_Chr1g0194481 50.877 114 56 0 267 380 104 217 2.35e-32 125
Msa0846540 MtrunA17_Chr1g0194481 58.065 62 23 2 153 213 158 217 7.67e-16 78.2
Msa0846540 MtrunA17_Chr4g0051881 43.056 144 76 1 261 404 118 255 1.75e-31 123
Msa0846540 MtrunA17_Chr4g0051881 60.000 60 23 1 153 211 178 237 2.43e-16 79.7
Msa0846540 MtrunA17_Chr7g0270191 61.176 85 33 0 306 390 130 214 4.75e-30 118
Msa0846540 MtrunA17_Chr7g0270191 61.290 62 21 2 153 213 145 204 1.40e-16 80.1
Msa0846540 MtrunA17_Chr2g0294231 65.789 76 26 0 306 381 188 263 9.60e-29 116
Msa0846540 MtrunA17_Chr2g0294231 60.000 60 23 1 153 211 203 262 1.47e-15 77.8
Msa0846540 MtrunA17_Chr8g0335811 60.241 83 32 1 304 386 137 218 1.81e-28 112
Msa0846540 MtrunA17_Chr8g0335811 63.793 58 18 2 153 208 154 210 1.51e-16 78.6
Msa0846540 MtrunA17_Chr3g0129361 62.162 74 28 0 304 377 127 200 2.41e-28 111
Msa0846540 MtrunA17_Chr3g0129361 50.000 78 33 3 153 228 144 217 6.60e-15 73.6
Msa0846540 MtrunA17_Chr5g0443131 62.667 75 28 0 307 381 143 217 3.02e-28 113
Msa0846540 MtrunA17_Chr5g0443131 58.333 60 24 1 153 211 157 216 4.76e-16 78.6
Msa0846540 MtrunA17_Chr5g0418781 48.649 111 48 1 267 377 79 180 1.52e-26 108
Msa0846540 MtrunA17_Chr5g0418781 58.621 58 23 1 153 209 124 181 7.31e-15 74.7
Msa0846540 MtrunA17_Chr8g0383351 61.333 75 28 1 304 377 142 216 1.61e-26 106
Msa0846540 MtrunA17_Chr8g0383351 45.745 94 44 4 136 226 142 231 2.77e-15 75.1
Msa0846540 MtrunA17_Chr7g0224801 62.162 74 26 1 311 384 83 154 6.43e-26 103
Msa0846540 MtrunA17_Chr7g0224801 56.140 57 24 1 153 208 93 149 1.71e-15 74.3
Msa0846540 MtrunA17_Chr8g0386241 48.315 89 46 0 304 392 86 174 4.77e-25 101
Msa0846540 MtrunA17_Chr8g0386241 44.304 79 42 2 153 230 103 180 6.07e-14 70.1
Msa0846540 MtrunA17_Chr8g0383251 56.164 73 32 0 308 380 95 167 3.58e-24 99.0
Msa0846540 MtrunA17_Chr8g0383251 53.333 60 27 1 153 211 108 167 5.70e-13 67.4
Msa0846540 MtrunA17_Chr6g0485431 57.333 75 31 1 307 380 140 214 6.99e-24 102
Msa0846540 MtrunA17_Chr6g0485431 40.816 98 52 4 122 217 127 220 1.14e-13 72.0
Msa0846540 MtrunA17_Chr7g0248721 45.794 107 43 2 271 377 105 196 8.14e-24 99.0
Msa0846540 MtrunA17_Chr7g0248721 47.619 84 38 3 140 222 128 206 3.95e-15 74.3
Msa0846540 MtrunA17_Chr3g0129321 52.000 75 36 0 307 381 104 178 1.30e-23 97.8
Msa0846540 MtrunA17_Chr3g0129321 53.333 60 27 1 153 211 118 177 5.84e-14 70.5
Msa0846540 MtrunA17_Chr4g0068541 55.405 74 33 0 308 381 195 268 2.36e-23 101
Msa0846540 MtrunA17_Chr4g0068541 61.667 60 22 1 153 211 208 267 2.75e-16 80.5
Msa0846540 MtrunA17_Chr1g0189391 50.538 93 44 2 308 398 84 176 1.01e-22 98.6
Msa0846540 MtrunA17_Chr1g0189391 45.455 77 39 3 153 227 97 172 7.51e-12 66.2
Msa0846540 MtrunA17_Chr3g0099641 48.780 82 41 1 300 380 230 311 1.09e-22 100
Msa0846540 MtrunA17_Chr3g0099641 35.294 136 79 4 95 223 190 323 3.26e-15 77.4
Msa0846540 MtrunA17_Chr1g0150801 54.286 70 32 0 308 377 89 158 1.29e-22 94.0
Msa0846540 MtrunA17_Chr1g0150801 54.386 57 25 1 153 208 102 158 5.21e-13 66.6
Msa0846540 MtrunA17_Chr7g0270831 52.564 78 36 1 308 384 203 280 9.40e-22 97.1
Msa0846540 MtrunA17_Chr7g0270831 51.667 60 27 2 154 211 217 276 1.86e-12 68.9
Msa0846540 MtrunA17_Chr2g0288871 45.455 88 47 1 294 380 278 365 1.11e-21 97.4
Msa0846540 MtrunA17_Chr2g0288871 51.667 60 27 2 154 211 306 365 1.34e-12 69.7
Msa0846540 MtrunA17_Chr4g0025061 49.383 81 40 1 303 382 342 422 2.23e-21 96.7
Msa0846540 MtrunA17_Chr4g0025061 36.458 96 59 2 154 247 361 456 1.75e-11 66.2
Msa0846540 MtrunA17_Chr2g0322391 46.067 89 47 1 295 382 323 411 2.91e-21 96.3
Msa0846540 MtrunA17_Chr2g0322391 49.180 61 29 2 153 211 349 409 1.06e-11 67.0
Msa0846540 MtrunA17_Chr4g0051181 48.315 89 41 2 298 381 216 304 3.25e-21 95.9
Msa0846540 MtrunA17_Chr4g0051181 39.216 102 55 4 117 211 202 303 9.62e-14 72.8
Msa0846540 MtrunA17_Chr4g0075201 47.619 84 43 1 300 382 246 329 3.65e-21 95.9
Msa0846540 MtrunA17_Chr4g0075201 49.180 61 29 2 153 211 267 327 4.77e-12 67.8
Msa0846540 MtrunA17_Chr4g0060271 52.703 74 34 1 308 380 242 315 4.35e-21 95.9
Msa0846540 MtrunA17_Chr4g0060271 52.459 61 27 2 153 211 255 315 1.15e-13 73.2
Msa0846540 MtrunA17_Chr7g0216891 39.496 119 70 2 260 377 159 276 7.97e-21 95.1
Msa0846540 MtrunA17_Chr7g0216891 52.459 61 25 3 153 210 219 278 4.86e-12 67.8
Msa0846540 MtrunA17_Chr5g0432071 64.407 59 21 0 153 211 104 162 8.50e-21 90.1
Msa0846540 MtrunA17_Chr5g0432071 53.226 62 28 1 321 382 104 164 2.58e-15 74.7
Msa0846540 MtrunA17_Chr1g0147881 55.556 81 32 2 303 382 247 324 1.10e-20 92.8
Msa0846540 MtrunA17_Chr1g0147881 50.725 69 31 3 144 210 254 321 6.99e-13 69.3
Msa0846540 MtrunA17_Chr1g0188961 56.579 76 19 1 341 416 3 64 1.29e-20 85.1
Msa0846540 MtrunA17_Chr7g0238921 62.712 59 22 0 319 377 122 180 2.17e-20 91.3
Msa0846540 MtrunA17_Chr7g0238921 45.455 99 48 3 115 208 83 180 8.55e-15 75.1
Msa0846540 MtrunA17_Chr2g0302391 46.237 93 46 2 308 399 198 287 5.43e-20 91.7
Msa0846540 MtrunA17_Chr2g0302391 51.667 60 27 2 154 211 212 271 6.15e-13 70.1
Msa0846540 MtrunA17_Chr2g0333851 56.250 64 27 1 319 381 167 230 7.22e-20 90.1
Msa0846540 MtrunA17_Chr2g0333851 51.667 60 27 2 154 211 170 229 1.61e-12 68.2
Msa0846540 MtrunA17_Chr4g0025051 42.593 108 54 3 279 381 292 396 9.67e-20 91.7
Msa0846540 MtrunA17_Chr3g0136961 36.054 147 62 6 255 377 57 195 1.61e-19 88.6
Msa0846540 MtrunA17_Chr3g0136961 45.333 75 39 2 136 208 121 195 6.22e-14 72.0
Msa0846540 MtrunA17_Chr5g0401821 50.685 73 35 1 318 389 196 268 6.15e-19 86.3
Msa0846540 MtrunA17_Chr5g0401821 46.575 73 37 2 140 210 186 258 3.30e-13 69.7
Msa0846540 MtrunA17_Chr4g0071521 45.745 94 39 3 285 377 220 302 2.29e-18 85.5
Msa0846540 MtrunA17_Chr4g0071521 47.761 67 32 3 144 208 237 302 6.84e-12 66.2
Msa0846540 MtrunA17_Chr4g0053281 56.061 66 28 1 318 382 263 328 2.33e-18 85.9
Msa0846540 MtrunA17_Chr4g0053281 54.688 64 26 3 149 210 263 325 3.00e-14 73.6
Msa0846540 MtrunA17_Chr1g0150281 49.315 73 34 2 308 377 125 197 2.65e-18 84.7
Msa0846540 MtrunA17_Chr1g0150281 52.632 57 25 2 154 208 141 197 1.75e-13 70.5
Msa0846540 MtrunA17_Chr2g0284321 36.800 125 66 5 151 270 33 149 3.84e-18 82.8
Msa0846540 MtrunA17_Chr2g0284321 43.478 92 50 2 322 412 36 126 9.73e-18 81.6
Msa0846540 MtrunA17_Chr4g0024391 32.000 150 82 4 240 382 155 291 6.43e-18 85.9
Msa0846540 MtrunA17_Chr8g0379461 51.515 66 31 1 322 386 77 142 1.12e-17 82.0
Msa0846540 MtrunA17_Chr8g0379461 49.206 63 30 2 151 211 74 136 3.13e-13 69.3
Msa0846540 MtrunA17_Chr4g0001361 53.968 63 28 1 319 380 160 222 1.50e-17 83.2
Msa0846540 MtrunA17_Chr4g0001361 53.333 60 26 2 154 211 163 222 8.55e-14 72.0
Msa0846540 MtrunA17_Chr7g0270051 50.000 70 34 1 322 390 54 123 2.35e-17 81.6
Msa0846540 MtrunA17_Chr7g0270051 47.826 69 32 3 154 220 54 120 1.90e-11 64.3
Msa0846540 MtrunA17_Chr2g0289181 49.351 77 38 1 310 385 3 79 7.30e-17 79.7
Msa0846540 MtrunA17_Chr2g0289181 52.174 69 31 2 149 215 10 78 1.79e-14 72.8
Msa0846540 MtrunA17_Chr1g0188971 48.101 79 40 1 264 341 4 82 9.94e-17 74.7
Msa0846540 MtrunA17_Chr1g0184691 52.113 71 32 2 318 386 290 360 1.02e-16 81.3
Msa0846540 MtrunA17_Chr1g0184691 54.839 62 25 3 149 208 290 350 1.64e-12 68.6
Msa0846540 MtrunA17_Chr7g0248691 44.000 100 53 3 285 383 120 217 1.12e-16 80.9
Msa0846540 MtrunA17_Chr2g0293481 46.341 82 40 2 322 402 268 346 2.40e-16 80.9
Msa0846540 MtrunA17_Chr2g0293481 48.333 60 29 2 154 211 268 327 7.97e-11 63.9
Msa0846540 MtrunA17_Chr6g0468181 61.818 55 21 0 163 217 12 66 2.73e-16 74.7
Msa0846540 MtrunA17_Chr7g0228941 50.820 61 29 1 318 377 49 109 4.60e-16 74.3
Msa0846540 MtrunA17_Chr7g0228941 48.529 68 32 3 144 209 44 110 1.65e-13 67.0
Msa0846540 MtrunA17_Chr2g0319961 49.231 65 32 1 322 385 81 145 5.52e-16 77.8
Msa0846540 MtrunA17_Chr2g0319961 48.485 66 32 2 151 214 78 143 1.51e-13 70.5
Msa0846540 MtrunA17_Chr1g0150271 45.714 70 37 1 312 380 92 161 5.59e-16 77.4
Msa0846540 MtrunA17_Chr1g0150271 34.483 116 69 3 154 262 102 217 6.22e-14 71.6
Msa0846540 MtrunA17_Chr8g0348311 36.792 106 64 3 276 380 112 215 6.33e-16 78.6
Msa0846540 MtrunA17_Chr8g0387501 51.613 62 29 1 320 380 128 189 9.84e-16 77.0
Msa0846540 MtrunA17_Chr8g0387501 45.833 72 35 3 148 217 124 193 2.24e-12 67.0
Msa0846540 MtrunA17_Chr1g0202461 45.946 74 38 2 308 380 249 321 2.68e-15 77.4
Msa0846540 MtrunA17_Chr1g0202461 42.647 68 37 2 146 211 254 321 2.93e-11 64.7
Msa0846540 MtrunA17_Chr3g0139021 43.243 74 41 1 306 378 299 372 1.24e-14 75.5
Msa0846540 MtrunA17_Chr3g0139021 47.761 67 32 3 144 208 306 371 2.07e-11 65.5
Msa0846540 MtrunA17_Chr5g0419241 46.000 50 27 0 298 347 54 103 9.22e-13 64.3
Msa0846540 MtrunA17_Chr3g0126391 46.479 71 33 3 140 206 121 190 1.82e-12 68.2
Msa0846540 MtrunA17_Chr3g0126391 39.560 91 49 3 320 407 132 219 5.99e-12 66.6
Msa0846540 MtrunA17_Chr8g0387981 51.724 58 25 1 321 375 132 189 3.90e-12 67.4
Msa0846540 MtrunA17_Chr8g0387981 31.655 139 64 4 99 206 51 189 1.49e-11 65.5
Msa0846540 MtrunA17_Chr2g0315361 48.333 60 28 1 319 375 146 205 2.74e-11 64.3
Msa0846540 MtrunA17_Chr8g0347251 43.836 73 32 3 152 215 135 207 4.96e-11 63.9
Msa0846540 MtrunA17_Chr7g0275531 45.714 70 32 3 153 216 118 187 5.68e-11 63.5
Msa0846540 MtrunA17_Chr7g0275531 45.763 59 29 1 320 375 117 175 9.79e-11 62.8
Msa0846540 MtrunA17_Chr2g0315381 48.333 60 28 1 319 375 142 201 7.93e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846540 AT1G13960.1 50.000 526 150 20 8 434 3 514 2.11e-130 386
Msa0846540 AT2G03340.1 54.167 408 116 10 71 434 133 513 3.02e-130 385
Msa0846540 AT2G03340.1 65.957 47 12 2 24 66 20 66 7.65e-11 64.3
Msa0846540 AT1G13960.2 57.867 375 108 13 96 434 1 361 1.22e-120 355
Msa0846540 AT3G01080.2 43.633 479 168 17 22 434 18 460 2.68e-93 289
Msa0846540 AT3G01080.1 44.743 447 171 15 22 434 18 422 6.76e-91 281
Msa0846540 AT5G56270.1 48.667 300 108 4 130 383 250 549 9.20e-80 260
Msa0846540 AT2G38470.1 53.759 266 93 7 150 396 181 435 5.00e-79 254
Msa0846540 AT4G26640.5 52.846 246 96 4 152 386 34 270 6.62e-77 244
Msa0846540 AT4G26640.5 48.718 78 39 1 135 211 187 264 2.30e-15 77.8
Msa0846540 AT4G26640.6 52.846 246 96 4 152 386 34 270 6.62e-77 244
Msa0846540 AT4G26640.6 48.718 78 39 1 135 211 187 264 2.30e-15 77.8
Msa0846540 AT4G26640.4 52.846 246 96 4 152 386 34 270 6.62e-77 244
Msa0846540 AT4G26640.4 48.718 78 39 1 135 211 187 264 2.30e-15 77.8
Msa0846540 AT4G26640.3 52.846 246 96 4 152 386 34 270 6.62e-77 244
Msa0846540 AT4G26640.3 48.718 78 39 1 135 211 187 264 2.30e-15 77.8
Msa0846540 AT4G26640.1 54.167 240 102 3 152 386 138 374 2.97e-76 246
Msa0846540 AT4G26640.1 48.718 78 39 1 135 211 291 368 3.52e-15 77.8
Msa0846540 AT4G26640.7 52.846 246 96 4 152 386 170 406 5.32e-76 246
Msa0846540 AT4G26640.7 48.718 78 39 1 135 211 323 400 3.36e-15 78.2
Msa0846540 AT4G26640.2 54.167 240 102 3 152 386 210 446 1.17e-75 246
Msa0846540 AT4G26640.2 51.250 80 34 3 135 211 363 440 3.33e-15 78.2
Msa0846540 AT4G26440.1 48.214 280 113 6 145 395 170 446 3.56e-75 245
Msa0846540 AT5G07100.2 48.536 239 70 3 146 383 17 203 3.18e-70 221
Msa0846540 AT5G07100.2 56.250 64 27 1 153 215 141 204 1.75e-16 78.6
Msa0846540 AT5G07100.2 48.571 70 36 0 321 390 24 93 5.95e-15 73.9
Msa0846540 AT5G07100.4 48.536 239 70 3 146 383 17 203 3.18e-70 221
Msa0846540 AT5G07100.4 56.250 64 27 1 153 215 141 204 1.75e-16 78.6
Msa0846540 AT5G07100.4 48.571 70 36 0 321 390 24 93 5.95e-15 73.9
Msa0846540 AT5G07100.5 48.536 239 70 3 146 383 17 203 3.18e-70 221
Msa0846540 AT5G07100.5 56.250 64 27 1 153 215 141 204 1.75e-16 78.6
Msa0846540 AT5G07100.5 48.571 70 36 0 321 390 24 93 5.95e-15 73.9
Msa0846540 AT5G07100.3 48.536 239 70 3 146 383 17 203 3.18e-70 221
Msa0846540 AT5G07100.3 56.250 64 27 1 153 215 141 204 1.75e-16 78.6
Msa0846540 AT5G07100.3 48.571 70 36 0 321 390 24 93 5.95e-15 73.9
Msa0846540 AT5G07100.1 49.372 239 68 4 146 383 110 296 1.54e-69 223
Msa0846540 AT5G07100.1 56.250 64 27 1 153 215 234 297 3.81e-16 79.3
Msa0846540 AT5G07100.1 40.000 95 46 1 307 390 92 186 2.05e-15 77.0
Msa0846540 AT2G37260.2 44.406 286 106 8 149 400 79 345 2.47e-64 211
Msa0846540 AT2G37260.3 44.406 286 106 8 149 400 81 347 2.53e-64 211
Msa0846540 AT2G37260.1 44.406 286 106 8 149 400 161 427 1.05e-63 211
Msa0846540 AT2G30250.1 45.200 250 123 4 137 382 150 389 1.62e-60 202
Msa0846540 AT2G04880.2 43.580 257 113 8 149 387 107 349 2.34e-59 201
Msa0846540 AT2G04880.2 45.455 99 49 2 152 247 282 378 5.13e-20 92.4
Msa0846540 AT2G04880.1 41.176 272 122 7 149 387 107 373 2.48e-58 199
Msa0846540 AT2G04880.1 45.455 99 49 2 152 247 306 402 5.70e-20 92.4
Msa0846540 AT4G12020.6 53.731 201 88 4 146 341 461 661 3.86e-55 198
Msa0846540 AT4G12020.6 49.180 61 30 1 320 380 467 526 9.12e-12 68.2
Msa0846540 AT4G12020.8 53.731 201 88 4 146 341 461 661 3.86e-55 198
Msa0846540 AT4G12020.8 49.180 61 30 1 320 380 467 526 9.12e-12 68.2
Msa0846540 AT4G12020.3 53.731 201 88 4 146 341 461 661 4.26e-55 197
Msa0846540 AT4G12020.3 49.180 61 30 1 320 380 467 526 9.70e-12 67.8
Msa0846540 AT4G12020.1 53.731 201 88 4 146 341 461 661 4.96e-55 197
Msa0846540 AT4G12020.1 49.180 61 30 1 320 380 467 526 1.04e-11 67.8
Msa0846540 AT4G12020.9 53.731 201 88 4 146 341 461 661 4.96e-55 197
Msa0846540 AT4G12020.9 49.180 61 30 1 320 380 467 526 1.04e-11 67.8
Msa0846540 AT4G12020.7 53.731 201 88 4 146 341 461 661 5.19e-55 197
Msa0846540 AT4G12020.7 49.180 61 30 1 320 380 467 526 1.06e-11 67.8
Msa0846540 AT4G12020.2 53.731 201 88 4 146 341 461 661 5.36e-55 197
Msa0846540 AT4G12020.2 49.180 61 30 1 320 380 467 526 1.05e-11 67.8
Msa0846540 AT4G12020.11 53.731 201 88 4 146 341 461 661 6.10e-55 197
Msa0846540 AT4G12020.11 49.180 61 30 1 320 380 467 526 1.37e-11 67.4
Msa0846540 AT4G12020.5 53.731 201 88 4 146 341 394 594 6.18e-55 197
Msa0846540 AT4G12020.5 49.180 61 30 1 320 380 400 459 1.18e-11 67.8
Msa0846540 AT4G12020.4 53.731 201 88 4 146 341 461 661 6.54e-55 197
Msa0846540 AT4G12020.4 49.180 61 30 1 320 380 467 526 1.10e-11 67.8
Msa0846540 AT4G12020.10 53.731 201 88 4 146 341 461 661 6.78e-55 197
Msa0846540 AT4G12020.10 49.180 61 30 1 320 380 467 526 1.08e-11 67.8
Msa0846540 AT4G30935.1 42.017 238 123 6 151 383 166 393 1.18e-48 172
Msa0846540 AT4G30935.1 56.250 64 27 1 154 216 332 395 1.97e-17 84.7
Msa0846540 AT3G01080.3 39.223 283 101 13 22 239 18 294 2.68e-37 139
Msa0846540 AT3G01080.3 58.333 60 24 1 321 380 205 263 1.58e-15 77.8
Msa0846540 AT4G18170.1 68.000 75 24 0 306 380 157 231 1.06e-30 120
Msa0846540 AT4G18170.1 58.333 60 24 1 153 211 172 231 4.80e-16 79.3
Msa0846540 AT1G29860.1 65.789 76 26 0 306 381 121 196 1.88e-30 119
Msa0846540 AT1G29860.1 58.333 60 24 1 153 211 136 195 5.64e-16 78.6
Msa0846540 AT5G46350.1 62.338 77 29 0 307 383 169 245 7.48e-29 115
Msa0846540 AT5G46350.1 54.545 66 28 2 153 217 183 247 4.00e-15 76.6
Msa0846540 AT2G44745.1 59.036 83 33 1 304 386 128 209 1.97e-28 112
Msa0846540 AT2G44745.1 57.971 69 25 3 153 219 145 211 1.45e-16 79.0
Msa0846540 AT2G47260.1 64.000 75 27 0 306 380 159 233 2.37e-28 114
Msa0846540 AT2G47260.1 58.333 60 24 1 153 211 174 233 2.66e-15 77.0
Msa0846540 AT4G39410.1 64.865 74 26 0 304 377 206 279 2.67e-28 114
Msa0846540 AT4G39410.1 49.333 75 35 2 136 208 206 279 2.38e-13 70.9
Msa0846540 AT5G13080.1 54.878 82 37 0 308 389 54 135 2.64e-27 106
Msa0846540 AT5G13080.1 54.386 57 25 1 153 208 67 123 3.14e-15 73.2
Msa0846540 AT1G69310.4 47.826 115 53 1 263 377 96 203 2.71e-27 110
Msa0846540 AT1G69310.4 60.345 58 22 1 153 209 147 204 7.83e-16 78.2
Msa0846540 AT1G69310.2 47.826 115 53 1 263 377 96 203 2.71e-27 110
Msa0846540 AT1G69310.2 60.345 58 22 1 153 209 147 204 7.83e-16 78.2
Msa0846540 AT1G69310.1 47.826 115 53 1 263 377 96 203 2.71e-27 110
Msa0846540 AT1G69310.1 60.345 58 22 1 153 209 147 204 7.83e-16 78.2
Msa0846540 AT1G64000.1 38.650 163 91 3 220 377 12 170 8.81e-27 106
Msa0846540 AT1G64000.1 49.333 75 35 2 136 208 97 170 1.39e-15 75.5
Msa0846540 AT5G49520.1 62.667 75 28 0 306 380 206 280 8.89e-27 111
Msa0846540 AT5G49520.1 58.333 60 24 1 153 211 221 280 3.59e-15 77.4
Msa0846540 AT5G41570.1 63.380 71 26 0 307 377 84 154 1.21e-26 105
Msa0846540 AT5G41570.1 54.839 62 25 2 149 208 94 154 5.32e-14 70.5
Msa0846540 AT3G01970.1 57.317 82 35 0 308 389 52 133 1.58e-26 104
Msa0846540 AT3G01970.1 52.381 63 29 1 153 214 65 127 2.37e-15 73.6
Msa0846540 AT1G55600.1 57.303 89 38 0 294 382 280 368 2.70e-25 108
Msa0846540 AT1G55600.1 57.377 61 23 2 153 211 307 366 1.52e-13 72.8
Msa0846540 AT5G26170.1 58.571 70 29 0 308 377 100 169 3.84e-25 101
Msa0846540 AT5G26170.1 52.459 61 28 1 153 212 113 173 3.38e-14 70.9
Msa0846540 AT3G62340.1 62.162 74 28 0 307 380 104 177 4.82e-25 104
Msa0846540 AT3G62340.1 58.333 60 24 1 153 211 118 177 7.81e-15 75.1
Msa0846540 AT2G46130.1 60.563 71 28 0 307 377 16 86 4.89e-25 99.4
Msa0846540 AT2G46130.1 58.621 58 23 1 152 208 29 86 1.39e-15 72.8
Msa0846540 AT4G04450.2 45.370 108 58 1 300 406 177 284 1.26e-24 105
Msa0846540 AT4G04450.2 51.667 60 27 2 154 211 199 258 7.89e-13 70.5
Msa0846540 AT4G04450.1 45.370 108 58 1 300 406 271 378 4.80e-24 105
Msa0846540 AT2G21900.1 50.000 76 35 1 310 382 95 170 6.22e-23 96.3
Msa0846540 AT2G21900.1 41.053 95 55 1 144 237 100 194 1.02e-14 73.2
Msa0846540 AT1G69310.3 45.217 115 52 2 263 377 96 199 2.26e-22 97.1
Msa0846540 AT1G69310.3 55.172 58 21 2 153 209 147 200 3.19e-11 64.3
Msa0846540 AT5G64810.1 52.113 71 34 0 308 378 97 167 6.24e-22 93.6
Msa0846540 AT5G64810.1 50.000 60 25 2 153 209 110 167 1.45e-11 63.9
Msa0846540 AT1G62300.1 49.398 83 41 1 299 380 290 372 7.96e-22 98.6
Msa0846540 AT1G62300.1 39.394 99 54 4 119 211 274 372 4.51e-13 71.6
Msa0846540 AT4G22070.4 46.591 88 46 1 294 380 270 357 9.45e-22 98.2
Msa0846540 AT4G22070.4 51.667 60 27 2 154 211 298 357 1.32e-12 70.1
Msa0846540 AT4G22070.3 46.591 88 46 1 294 380 270 357 9.45e-22 98.2
Msa0846540 AT4G22070.3 51.667 60 27 2 154 211 298 357 1.32e-12 70.1
Msa0846540 AT4G22070.2 46.591 88 46 1 294 380 270 357 9.45e-22 98.2
Msa0846540 AT4G22070.2 51.667 60 27 2 154 211 298 357 1.32e-12 70.1
Msa0846540 AT4G22070.1 46.591 88 46 1 294 380 270 357 9.45e-22 98.2
Msa0846540 AT4G22070.1 51.667 60 27 2 154 211 298 357 1.32e-12 70.1
Msa0846540 AT5G15130.2 47.561 82 42 1 304 384 168 249 8.33e-21 95.1
Msa0846540 AT5G15130.2 51.613 62 26 3 153 211 185 245 1.14e-12 70.1
Msa0846540 AT5G15130.1 47.561 82 42 1 304 384 210 291 8.86e-21 95.1
Msa0846540 AT5G15130.1 51.613 62 26 3 153 211 227 287 1.27e-12 70.1
Msa0846540 AT1G68150.1 51.282 78 37 1 308 384 222 299 1.94e-20 92.8
Msa0846540 AT1G68150.1 36.752 117 65 4 98 211 185 295 3.29e-14 74.3
Msa0846540 AT2G46130.2 56.338 71 27 1 307 377 16 82 2.38e-20 86.3
Msa0846540 AT2G46130.2 53.448 58 22 2 152 208 29 82 5.15e-11 59.7
Msa0846540 AT1G18860.1 51.282 78 37 1 304 380 222 299 3.05e-20 93.6
Msa0846540 AT2G25000.2 42.222 90 51 1 294 382 76 165 4.21e-20 89.4
Msa0846540 AT2G25000.2 33.333 120 66 5 154 262 104 220 2.99e-11 63.5
Msa0846540 AT2G25000.4 42.222 90 51 1 294 382 76 165 4.21e-20 89.4
Msa0846540 AT2G25000.4 33.333 120 66 5 154 262 104 220 2.99e-11 63.5
Msa0846540 AT2G25000.3 42.222 90 51 1 294 382 98 187 7.04e-20 89.0
Msa0846540 AT2G25000.3 33.333 120 66 5 154 262 126 242 5.51e-11 63.2
Msa0846540 AT2G25000.1 42.222 90 51 1 294 382 119 208 1.15e-19 89.0
Msa0846540 AT2G25000.1 33.333 120 66 5 154 262 147 263 6.75e-11 63.2
Msa0846540 AT1G80840.1 53.125 64 29 1 319 381 144 207 7.40e-19 87.0
Msa0846540 AT1G80840.1 50.820 61 28 2 154 212 147 207 1.50e-13 71.6
Msa0846540 AT5G43290.1 44.792 96 41 1 294 377 75 170 7.49e-19 86.7
Msa0846540 AT5G43290.1 53.846 78 25 3 152 218 113 190 2.40e-15 76.3
Msa0846540 AT4G31550.2 51.190 84 37 2 303 385 230 310 7.56e-19 87.4
Msa0846540 AT4G31550.2 54.839 62 25 3 149 208 242 302 2.18e-12 68.2
Msa0846540 AT4G31550.1 51.190 84 37 2 303 385 231 311 7.66e-19 87.4
Msa0846540 AT4G31550.1 54.839 62 25 3 149 208 243 303 2.14e-12 68.2
Msa0846540 AT4G23550.1 40.206 97 57 1 288 383 107 203 7.79e-19 87.4
Msa0846540 AT4G23550.1 34.667 150 83 5 76 211 52 200 1.13e-11 65.9
Msa0846540 AT4G31800.2 52.113 71 32 2 314 382 103 173 8.81e-19 85.9
Msa0846540 AT4G31800.2 49.180 61 29 2 154 212 112 172 1.05e-12 68.2
Msa0846540 AT4G31800.1 52.113 71 32 2 314 382 168 238 1.53e-18 86.3
Msa0846540 AT4G31800.1 49.180 61 29 2 154 212 177 237 1.50e-12 68.6
Msa0846540 AT4G01720.1 50.000 74 36 1 308 380 226 299 2.94e-18 87.4
Msa0846540 AT4G01720.1 41.463 82 46 2 132 211 218 299 3.79e-12 68.6
Msa0846540 AT2G23320.1 57.143 63 26 1 318 379 237 299 1.09e-17 84.0
Msa0846540 AT2G23320.1 53.125 64 27 3 149 210 237 299 8.24e-13 69.3
Msa0846540 AT2G30590.1 59.016 61 24 1 318 377 310 370 1.14e-17 84.7
Msa0846540 AT2G30590.1 53.731 67 27 4 149 212 310 375 3.81e-13 70.9
Msa0846540 AT4G24240.1 54.688 64 28 1 317 379 277 340 6.01e-17 82.4
Msa0846540 AT4G24240.1 50.725 69 31 3 144 210 273 340 9.74e-14 72.8
Msa0846540 AT4G01250.1 55.556 63 27 1 319 380 126 188 1.04e-16 80.9
Msa0846540 AT4G01250.1 33.333 126 75 4 154 277 129 247 1.40e-11 65.5
Msa0846540 AT2G24570.1 59.016 61 24 1 318 377 240 300 1.07e-16 81.3
Msa0846540 AT2G24570.1 53.968 63 26 3 149 209 240 301 1.35e-12 68.9
Msa0846540 AT5G28650.1 50.000 72 35 1 318 388 259 330 1.26e-16 80.9
Msa0846540 AT5G28650.1 53.226 62 26 3 149 208 259 319 1.23e-11 65.9
Msa0846540 AT3G04670.1 50.000 72 35 1 318 388 259 330 1.93e-16 80.5
Msa0846540 AT3G04670.1 51.613 62 27 3 149 208 259 319 1.06e-11 66.2
Msa0846540 AT5G52830.1 45.556 90 46 3 308 396 153 240 3.03e-16 80.1
Msa0846540 AT5G52830.1 48.485 66 30 3 154 217 166 229 3.38e-11 64.7
Msa0846540 AT1G30650.1 39.604 101 42 2 322 403 218 318 3.21e-16 80.9
Msa0846540 AT1G30650.1 50.000 60 28 2 154 211 218 277 3.50e-11 65.1
Msa0846540 AT1G29280.1 53.333 60 27 1 322 380 75 134 5.94e-16 77.8
Msa0846540 AT1G29280.1 49.206 63 30 2 151 211 72 134 1.50e-12 67.8
Msa0846540 AT3G58710.2 33.898 118 68 2 281 388 21 138 6.62e-16 78.2
Msa0846540 AT3G58710.2 44.286 70 37 2 151 218 68 137 6.18e-12 66.2
Msa0846540 AT3G58710.1 47.059 68 35 1 322 388 72 139 6.84e-16 77.8
Msa0846540 AT3G58710.1 44.286 70 37 2 151 218 69 138 6.07e-12 66.2
Msa0846540 AT2G34830.1 50.794 63 30 1 322 383 216 278 7.30e-16 79.7
Msa0846540 AT2G34830.1 48.333 60 29 2 154 211 216 275 7.73e-11 64.3
Msa0846540 AT2G34830.2 50.794 63 30 1 322 383 225 287 7.67e-16 79.7
Msa0846540 AT2G34830.2 48.333 60 29 2 154 211 225 284 8.29e-11 63.9
Msa0846540 AT1G69810.2 41.489 94 51 3 304 395 128 219 8.18e-16 78.6
Msa0846540 AT1G69810.2 45.455 66 33 2 149 211 141 206 1.83e-11 65.5
Msa0846540 AT1G69810.1 43.333 90 47 3 308 395 190 277 1.28e-15 78.6
Msa0846540 AT1G69810.1 45.455 66 33 2 149 211 199 264 2.11e-11 65.9
Msa0846540 AT5G45050.4 50.794 63 30 1 322 383 1042 1104 7.86e-15 77.4
Msa0846540 AT5G45050.1 50.794 63 30 1 322 383 1181 1243 8.37e-15 77.4
Msa0846540 AT5G45050.2 50.794 63 30 1 322 383 1153 1215 8.40e-15 77.4
Msa0846540 AT2G40740.1 51.562 64 27 2 147 206 167 230 1.79e-14 73.9
Msa0846540 AT2G40740.3 51.562 64 27 2 147 206 176 239 2.42e-14 73.9
Msa0846540 AT1G66560.1 51.724 58 25 1 321 375 103 160 3.92e-13 69.3
Msa0846540 AT2G46400.1 36.607 112 59 3 267 375 59 161 1.52e-12 68.6
Msa0846540 AT4G11070.2 37.500 112 55 5 127 229 89 194 1.82e-12 68.2
Msa0846540 AT4G11070.1 37.500 112 55 5 127 229 121 226 2.61e-12 67.8
Msa0846540 AT3G56400.1 39.024 82 43 2 313 387 112 193 3.30e-12 67.4
Msa0846540 AT5G24110.1 43.243 74 37 3 137 206 98 170 7.83e-12 66.2
Msa0846540 AT4G23810.1 43.662 71 35 3 140 206 146 215 8.91e-12 66.2
Msa0846540 AT5G45260.1 43.137 102 44 7 122 216 1179 1273 2.15e-11 66.6
Msa0846540 AT5G45260.1 32.258 155 84 6 233 383 1136 1273 8.33e-11 64.7

Find 130 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTACCAGAGTCTTAATTT+AGG 0.267358 5_4:+26728666 None:intergenic
TACGAAAACTTACCTCCTTT+TGG 0.275117 5_4:+26729611 None:intergenic
TATGTTGTTATGACTGCTTT+AGG 0.286428 5_4:+26728885 None:intergenic
AGTCCTGATGATAGAGTTAA+AGG 0.295815 5_4:-26728559 Msa0846540:three_prime_UTR
CCTGTTGCCTGACTAGATTC+AGG 0.298032 5_4:+26729717 None:intergenic
GGTTATAGATGGCGAAAATA+TGG 0.304499 5_4:-26729264 Msa0846540:CDS
TTTGATCGCTTATTAGGATT+CGG 0.306605 5_4:+26729834 None:intergenic
GGCTACAATTGGAGGAAATA+TGG 0.308838 5_4:-26730002 Msa0846540:CDS
TATGGACAGAAAGTTGTTAA+AGG 0.320018 5_4:-26729246 Msa0846540:CDS
TAACTGTCCTGTCAAGAAAA+AGG 0.329083 5_4:-26729922 Msa0846540:CDS
AACAACCTGTTGCTCGTCTA+AGG 0.334127 5_4:-26728716 Msa0846540:CDS
ATAACCGCAATTATTTATAA+AGG 0.337197 5_4:-26729876 Msa0846540:CDS
AAGGTTGAGCGTTCGCTTGC+TGG 0.338256 5_4:-26729903 Msa0846540:CDS
CCACCGGTGGTTACCGTTGC+CGG 0.343626 5_4:+26732223 None:intergenic
GGCGGTTGGCGGTGGTGAAG+GGG 0.368812 5_4:-26732404 Msa0846540:CDS
TTGATCGCTTATTAGGATTC+GGG 0.369634 5_4:+26729835 None:intergenic
GCGGTTGGCGGTGGTGAAGG+GGG 0.371964 5_4:-26732403 Msa0846540:CDS
GCGGCGGTTGGCGGTGGTGA+AGG 0.372834 5_4:-26732406 Msa0846540:CDS
CTTCAAATGAAAATTCAAAT+AGG 0.383970 5_4:-26729800 Msa0846540:CDS
ATTTCTGATAAGCCTAGTTT+TGG 0.384426 5_4:-26728768 Msa0846540:CDS
CTCTCTAACTTATTTGCTGA+TGG 0.386992 5_4:-26732295 Msa0846540:CDS
CGGCGGTTGGCGGTGGTGAA+GGG 0.392549 5_4:-26732405 Msa0846540:CDS
ACCGGTGGGTTTGATTCATC+TGG 0.396023 5_4:-26732208 Msa0846540:CDS
TAACTGTGAAGCATTATTGT+TGG 0.399399 5_4:+26728806 None:intergenic
ATCATCTGCGATATAGTTAT+CGG 0.399531 5_4:+26728644 None:intergenic
CACAACATAACATATAGTTT+AGG 0.414108 5_4:+26728399 None:intergenic
GAGGAAATATGGACAGAAAC+AGG 0.418222 5_4:-26729991 Msa0846540:CDS
CATATGATGTAGGTATCCTT+TGG 0.418514 5_4:-26730203 Msa0846540:intron
CCACCGTTGAACACACAACT+TGG 0.420922 5_4:+26732464 None:intergenic
CGCCGGTTCCATGGTGTCTC+CGG 0.421394 5_4:-26732242 Msa0846540:CDS
TTCAGCCTTAGACGAGCAAC+AGG 0.424679 5_4:+26728711 None:intergenic
CGTACGTGGCGGAAGAGTTA+AGG 0.426728 5_4:+26732363 None:intergenic
GCAACAGGTGAACATCTATC+TGG 0.429027 5_4:-26729702 Msa0846540:CDS
AAGTTAGAGAGAAGAGTCAT+AGG 0.429317 5_4:+26732307 None:intergenic
GTTATGCATATTAGTACTGT+TGG 0.430264 5_4:+26730130 None:intergenic
TAAAGGATAACAAGTTTAAA+CGG 0.433002 5_4:-26728542 Msa0846540:three_prime_UTR
AAAACTAGGCTTATCAGAAA+TGG 0.435730 5_4:+26728770 None:intergenic
TTGGTAGCATTGGTATTGGC+GGG 0.437748 5_4:-26728749 Msa0846540:CDS
TCAGCTTCTCGCCGGTTCCA+TGG 0.442799 5_4:-26732251 Msa0846540:CDS
TGTGTGTTCAACGGTGGAAA+TGG 0.449953 5_4:-26732458 Msa0846540:exon
TGCCGGAGACACCATGGAAC+CGG 0.455597 5_4:+26732240 None:intergenic
TTAAAGGAAATCCTTATCCT+AGG 0.456816 5_4:-26729230 Msa0846540:intron
TATCCTTTAACTCTATCATC+AGG 0.459014 5_4:+26728556 None:intergenic
CGGTTGGCGGTGGTGAAGGG+GGG 0.459079 5_4:-26732402 Msa0846540:CDS
AGAAGGCTGCAACCTTTGTT+CGG 0.460546 5_4:+26730055 None:intergenic
CTTCTTCCTTCCACGGTGGT+CGG 0.470680 5_4:+26732434 None:intergenic
TCCTTCTCTCAGCTTCTCGC+CGG 0.478730 5_4:-26732259 Msa0846540:CDS
GAAGAAGAAGCGGCGGTTGG+CGG 0.479683 5_4:-26732415 Msa0846540:CDS
GAAGAAGCGGCGGTTGGCGG+TGG 0.481467 5_4:-26732412 Msa0846540:CDS
GAAGTTGATCTCTTAGATGA+TGG 0.483367 5_4:-26729285 Msa0846540:CDS
CCGATGATGGCTACAATTGG+AGG 0.485258 5_4:-26730010 Msa0846540:CDS
CTGTTGCCTGACTAGATTCA+GGG 0.486306 5_4:+26729718 None:intergenic
TTCAAACTCAATGTCTAAGA+TGG 0.487664 5_4:-26729742 Msa0846540:CDS
ACAGTACTATGTGAAGTTGT+TGG 0.490613 5_4:+26729342 None:intergenic
CTGCCGATGATGGCTACAAT+TGG 0.491271 5_4:-26730013 Msa0846540:CDS
GATGGACCCTGAATCTAGTC+AGG 0.493707 5_4:-26729724 Msa0846540:CDS
GAAGCATATCACCTAGGATA+AGG 0.495253 5_4:+26729219 None:intergenic
TCTTAGATGATGGTTATAGA+TGG 0.497586 5_4:-26729275 Msa0846540:CDS
GTCGATAAGCCTGCCGATGA+TGG 0.498396 5_4:-26730023 Msa0846540:CDS
GAATTGAGCCCGACTCCAAA+AGG 0.499145 5_4:-26729626 Msa0846540:CDS
CCTGAATCTAGTCAGGCAAC+AGG 0.502478 5_4:-26729717 Msa0846540:CDS
GCTTCTTCTTCTTCCTTCCA+CGG 0.512076 5_4:+26732427 None:intergenic
TTCCATGGTGTCTCCGGCAA+CGG 0.512324 5_4:-26732236 Msa0846540:CDS
GCAGTCATAACAACATATGA+AGG 0.514254 5_4:-26728879 Msa0846540:CDS
TGGCTATTAGTCTTAGCTGC+TGG 0.515585 5_4:+26728837 None:intergenic
GAGAGAAGAGTCATAGGACC+AGG 0.520057 5_4:+26732313 None:intergenic
ATACCAATGCTACCAAAACT+AGG 0.520202 5_4:+26728756 None:intergenic
CCTCCAATTGTAGCCATCAT+CGG 0.527967 5_4:+26730010 None:intergenic
TTTGGTAGCATTGGTATTGG+CGG 0.529217 5_4:-26728750 Msa0846540:CDS
TTCGGAGAGAGGAGCATGAT+CGG 0.537950 5_4:+26730073 None:intergenic
GTGCACTTGTAATAACTTCG+AGG 0.540882 5_4:+26729951 None:intergenic
CTTAACTCTTCCGCCACGTA+CGG 0.541928 5_4:-26732362 Msa0846540:CDS
TCTTAGCTGCTGGAACATCA+TGG 0.545160 5_4:+26728847 None:intergenic
AAACTCCTAAATTAAGACTC+TGG 0.546985 5_4:-26728671 Msa0846540:three_prime_UTR
TGCAACCTTTGTTCGGAGAG+AGG 0.548420 5_4:+26730062 None:intergenic
AATGGACCGACCACCGTGGA+AGG 0.549974 5_4:-26732440 Msa0846540:CDS
CTCTCCTTTATAAATAATTG+CGG 0.550517 5_4:+26729872 None:intergenic
CAATTGTAGCCATCATCGGC+AGG 0.552856 5_4:+26730014 None:intergenic
GGTAGCATTGGTATTGGCGG+GGG 0.556601 5_4:-26728747 Msa0846540:CDS
CCGGCAACGGTAACCACCGG+TGG 0.560156 5_4:-26732223 Msa0846540:CDS
AAAAGTTGGTGGAGATAACA+GGG 0.561299 5_4:-26728516 Msa0846540:three_prime_UTR
GTTAAGGTGGGTCGCTGTGG+TGG 0.562648 5_4:+26732379 None:intergenic
AATGAAAATTCAAATAGGCA+AGG 0.563913 5_4:-26729795 Msa0846540:CDS
ATCTAAGAGATCAACTTCAC+TGG 0.563948 5_4:+26729290 None:intergenic
ATGAAAATTCAAATAGGCAA+GGG 0.564284 5_4:-26729794 Msa0846540:CDS
TTATCGACATTCAACGAAGA+AGG 0.568098 5_4:+26730038 None:intergenic
CAGATGATAAATGTTCGACT+TGG 0.580457 5_4:+26730108 None:intergenic
GGAGCATGATCGGTGGATGT+TGG 0.586815 5_4:+26730083 None:intergenic
GAAGAAGAAGAAGCGGCGGT+TGG 0.590540 5_4:-26732418 Msa0846540:CDS
ACAAGACAAATTAAACTCAA+AGG 0.592176 5_4:-26732621 Msa0846540:five_prime_UTR
TAATGCAACAAGAAAGTACA+TGG 0.594717 5_4:+26728354 None:intergenic
ACCGGCGAGAAGCTGAGAGA+AGG 0.597313 5_4:+26732258 None:intergenic
TTATTTGCTGATGGTGATGA+CGG 0.597799 5_4:-26732286 Msa0846540:CDS
ACGAGTGATAGTGAGGATGT+AGG 0.598153 5_4:-26729678 Msa0846540:CDS
GTGAAAAGTGCGTCCGTACG+TGG 0.598428 5_4:+26732349 None:intergenic
ACGTGGCGGAAGAGTTAAGG+TGG 0.606182 5_4:+26732366 None:intergenic
TGTTGCTCGTCTAAGGCTGA+AGG 0.606467 5_4:-26728709 Msa0846540:CDS
AGGACCAGGGCTAAAACCAC+CGG 0.613111 5_4:+26732327 None:intergenic
TGGTAGCATTGGTATTGGCG+GGG 0.613610 5_4:-26728748 Msa0846540:CDS
ATGCTCCTCTCTCCGAACAA+AGG 0.614608 5_4:-26730067 Msa0846540:CDS
TATGGACAGAAACAGGTGAA+AGG 0.615984 5_4:-26729984 Msa0846540:CDS
AGAGTTAAGGTGGGTCGCTG+TGG 0.617498 5_4:+26732376 None:intergenic
ATCTGGAACGAGTGATAGTG+AGG 0.619905 5_4:-26729685 Msa0846540:CDS
CATTATTGTTGGCAATAGTG+TGG 0.625832 5_4:+26728817 None:intergenic
TGCTTTCGAACGTTACAACT+CGG 0.628437 5_4:+26728930 None:intergenic
GGAGAGAGGAGCATGATCGG+TGG 0.628568 5_4:+26730076 None:intergenic
TACCGTTGCCGGAGACACCA+TGG 0.630265 5_4:+26732234 None:intergenic
ACCAGATGAATCAAACCCAC+CGG 0.631315 5_4:+26732207 None:intergenic
ATACTTTCGATGTACACAGA+AGG 0.633527 5_4:+26728472 None:intergenic
AAACCAAGTTGTGTGTTCAA+CGG 0.635334 5_4:-26732467 Msa0846540:five_prime_UTR
AAAGTTGGTGGAGATAACAG+GGG 0.637324 5_4:-26728515 Msa0846540:three_prime_UTR
TCTCCGGCAACGGTAACCAC+CGG 0.638389 5_4:-26732226 Msa0846540:CDS
ACAGCAGCAACCACTGACAC+AGG 0.639404 5_4:-26730174 Msa0846540:CDS
CCAAGTTGTGTGTTCAACGG+TGG 0.641124 5_4:-26732464 Msa0846540:five_prime_UTR
GTGCTGATTCAACTTATCAA+CGG 0.645507 5_4:-26729770 Msa0846540:CDS
GCAACCACTGACACAGGTCT+CGG 0.647175 5_4:-26730168 Msa0846540:CDS
CGGCAACGGTAACCACCGGT+GGG 0.654733 5_4:-26732222 Msa0846540:CDS
AGGTGATCGTGAAACAGAAG+TGG 0.657969 5_4:-26729658 Msa0846540:CDS
GTGGAAGGAAGAAGAAGAAG+CGG 0.662996 5_4:-26732425 Msa0846540:CDS
TTGCTGCTGTGTCATTCCAA+AGG 0.666392 5_4:+26730187 None:intergenic
AGAGAAGAGTCATAGGACCA+GGG 0.673747 5_4:+26732314 None:intergenic
TGAGCCGAGACCTGTGTCAG+TGG 0.676749 5_4:+26730164 None:intergenic
AAAAGTGCGTCCGTACGTGG+CGG 0.684333 5_4:+26732352 None:intergenic
TTGAGCCCGACTCCAAAAGG+AGG 0.687140 5_4:-26729623 Msa0846540:intron
CGTGGCGGAAGAGTTAAGGT+GGG 0.691075 5_4:+26732367 None:intergenic
ACACAGGTCTCGGCTCACGA+AGG 0.691681 5_4:-26730158 Msa0846540:CDS
TCTTCTTCTTCCTTCCACGG+TGG 0.698127 5_4:+26732430 None:intergenic
AGATGAATCAAACCCACCGG+TGG 0.700312 5_4:+26732210 None:intergenic
GAAGGAAGAAGAAGAAGCGG+CGG 0.714118 5_4:-26732422 Msa0846540:CDS
TGGAAATGGACCGACCACCG+TGG 0.747666 5_4:-26732444 Msa0846540:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATGTTAAATAATGTA+AGG + chr5_4:26730641-26730660 None:intergenic 10.0%
!!! ACTTTTTAAAAGAGTTTAAA+TGG - chr5_4:26729223-26729242 Msa0846540:intron 15.0%
!! ATAGTAATATTTCCAAATTT+GGG + chr5_4:26729830-26729849 None:intergenic 15.0%
!!! ACTTCTTTTTCTTTTTGTTT+TGG - chr5_4:26728518-26728537 Msa0846540:three_prime_UTR 20.0%
!! TTAACACTTATATATAACAG+TGG + chr5_4:26728929-26728948 None:intergenic 20.0%
!! TTTAATATAAGATGCTTTCT+TGG - chr5_4:26728970-26728989 Msa0846540:intron 20.0%
!! ACAATGCATTATTATATGTA+GGG - chr5_4:26729043-26729062 Msa0846540:intron 20.0%
!!! CTACATATTTTTTTTTTCTC+AGG + chr5_4:26729115-26729134 None:intergenic 20.0%
!! ACAAATTACATAGAAATGAA+GGG + chr5_4:26729336-26729355 None:intergenic 20.0%
!! AACAAATTACATAGAAATGA+AGG + chr5_4:26729337-26729356 None:intergenic 20.0%
!! GATAGTAATATTTCCAAATT+TGG + chr5_4:26729831-26729850 None:intergenic 20.0%
!! AAAAAAGAGATTATCTAAAG+TGG + chr5_4:26729958-26729977 None:intergenic 20.0%
!! GTTTGTATATAAACAATGTA+CGG + chr5_4:26730289-26730308 None:intergenic 20.0%
!! ATAACCGCAATTATTTATAA+AGG - chr5_4:26731143-26731162 Msa0846540:intron 20.0%
!! CTTCAAATGAAAATTCAAAT+AGG - chr5_4:26731219-26731238 Msa0846540:intron 20.0%
!! TTTACAACTTTGACATATAT+CGG + chr5_4:26731443-26731462 None:intergenic 20.0%
!! TATATGTCAAAGTTGTAAAT+AGG - chr5_4:26731444-26731463 Msa0846540:intron 20.0%
!!! TTGTATTTAGTTCATTAATC+AGG + chr5_4:26731516-26731535 None:intergenic 20.0%
!!! CAGTATTTACAACATTTTTA+TGG - chr5_4:26731560-26731579 Msa0846540:intron 20.0%
!!! GATTTTGCTTATAGTTTTTA+CGG - chr5_4:26731964-26731983 Msa0846540:intron 20.0%
!!! TGTTTTCTTACATAATGTTT+AGG - chr5_4:26732045-26732064 Msa0846540:intron 20.0%
!! TAAAGGATAACAAGTTTAAA+CGG - chr5_4:26732477-26732496 Msa0846540:five_prime_UTR 20.0%
! ACAAGACAAATTAAACTCAA+AGG - chr5_4:26728398-26728417 Msa0846540:three_prime_UTR 25.0%
! GACAATGCATTATTATATGT+AGG - chr5_4:26729042-26729061 Msa0846540:intron 25.0%
! CAATGCATTATTATATGTAG+GGG - chr5_4:26729044-26729063 Msa0846540:intron 25.0%
! AATGCATTATTATATGTAGG+GGG - chr5_4:26729045-26729064 Msa0846540:intron 25.0%
!!! TGATCCTTTTAAATTTCTAG+CGG - chr5_4:26729188-26729207 Msa0846540:intron 25.0%
! AGAGTTTAAATGGTATGTAT+AGG - chr5_4:26729233-26729252 Msa0846540:CDS 25.0%
!! TTGATTTTGCAATCCAAAAA+AGG - chr5_4:26729281-26729300 Msa0846540:CDS 25.0%
! ATTTGATATAGTGATCCTAT+AGG - chr5_4:26729460-26729479 Msa0846540:intron 25.0%
!!! ATATTCGTTTTCCTTGTTTT+TGG + chr5_4:26729497-26729516 None:intergenic 25.0%
!!! GATATTGTTTTATTGACATG+TGG + chr5_4:26729663-26729682 None:intergenic 25.0%
!! TTAAAATATTCCTCCACTTT+TGG - chr5_4:26729795-26729814 Msa0846540:CDS 25.0%
! TGGATAAATTTACCCAAATT+TGG - chr5_4:26729815-26729834 Msa0846540:CDS 25.0%
! ACGAAATTCTTATAAGCTAT+AGG + chr5_4:26730153-26730172 None:intergenic 25.0%
! GTTAGAAACTAATTCAAACT+AGG - chr5_4:26730207-26730226 Msa0846540:intron 25.0%
! TTCATGATAAAGGGAAAAAA+AGG + chr5_4:26730357-26730376 None:intergenic 25.0%
! CTTTACTTAGCATAATGTAA+GGG + chr5_4:26730546-26730565 None:intergenic 25.0%
! ACTTTACTTAGCATAATGTA+AGG + chr5_4:26730547-26730566 None:intergenic 25.0%
! ACTTAACATGATTATACTTG+AGG - chr5_4:26730707-26730726 Msa0846540:intron 25.0%
! CTCTCCTTTATAAATAATTG+CGG + chr5_4:26731150-26731169 None:intergenic 25.0%
! AATGAAAATTCAAATAGGCA+AGG - chr5_4:26731224-26731243 Msa0846540:intron 25.0%
! ATGAAAATTCAAATAGGCAA+GGG - chr5_4:26731225-26731244 Msa0846540:intron 25.0%
! ACAATAACAAGACAACATAA+AGG + chr5_4:26731619-26731638 None:intergenic 25.0%
! TAAATAAGCCAAATTTAACG+AGG + chr5_4:26731877-26731896 None:intergenic 25.0%
! ATAAATGAGACACACTATTA+GGG + chr5_4:26731998-26732017 None:intergenic 25.0%
!!! TTCTGTTCTTTTTCAGTTTT+AGG - chr5_4:26732422-26732441 Msa0846540:CDS 25.0%
! AGTTTAAACGGAAAAAAAGT+TGG - chr5_4:26732489-26732508 Msa0846540:five_prime_UTR 25.0%
! CACAACATAACATATAGTTT+AGG + chr5_4:26732623-26732642 None:intergenic 25.0%
ATAAACAAAGATTTCACCTG+AGG + chr5_4:26728850-26728869 None:intergenic 30.0%
ACTCTTAAACACAACATACT+AGG + chr5_4:26729260-26729279 None:intergenic 30.0%
CTATCAACTTCTACTTACAT+GGG + chr5_4:26729426-26729445 None:intergenic 30.0%
ACTATCAACTTCTACTTACA+TGG + chr5_4:26729427-26729446 None:intergenic 30.0%
TAGGATCACTATATCAAATG+AGG + chr5_4:26729459-26729478 None:intergenic 30.0%
CGGCTAAAAAATGATTTGAT+TGG + chr5_4:26729580-26729599 None:intergenic 30.0%
!!! ATCATTTTTTAGCCGTTTTG+AGG - chr5_4:26729585-26729604 Msa0846540:intron 30.0%
! TTTTATTGACATGTGGTCTA+TGG + chr5_4:26729656-26729675 None:intergenic 30.0%
ACAATATCCGAAATACAACT+TGG - chr5_4:26729675-26729694 Msa0846540:CDS 30.0%
TACGAAAAGACAAGTAAATG+TGG + chr5_4:26729747-26729766 None:intergenic 30.0%
AATTCTTGAACCAAACTTCA+CGG + chr5_4:26729777-26729796 None:intergenic 30.0%
GTAAATTTATCCAAAAGTGG+AGG + chr5_4:26729808-26729827 None:intergenic 30.0%
TGGGTAAATTTATCCAAAAG+TGG + chr5_4:26729811-26729830 None:intergenic 30.0%
GTTGACAAGATTATCTAAAG+TGG + chr5_4:26730000-26730019 None:intergenic 30.0%
! TCAATAGTCCTCTCTTTTAA+GGG - chr5_4:26730258-26730277 Msa0846540:intron 30.0%
! TTGTATTTGAGGCATTATCA+AGG + chr5_4:26730315-26730334 None:intergenic 30.0%
TGCAGAAAAGTTTGTATTTG+AGG + chr5_4:26730326-26730345 None:intergenic 30.0%
! ATAAAGGGAAAAAAAGGCAT+TGG + chr5_4:26730351-26730370 None:intergenic 30.0%
! TTTTCCCTTTATCATGAAAC+AGG - chr5_4:26730359-26730378 Msa0846540:intron 30.0%
!! TGCATAGTTCTAAACTATGT+AGG + chr5_4:26730419-26730438 None:intergenic 30.0%
GTGTCATATATGCTCTATTT+AGG - chr5_4:26730520-26730539 Msa0846540:intron 30.0%
TAAGTAAAGTCTCAAACTCT+TGG - chr5_4:26730557-26730576 Msa0846540:intron 30.0%
TCTATATATCCTCACTATCT+TGG + chr5_4:26730750-26730769 None:intergenic 30.0%
GTTATGCATATTAGTACTGT+TGG + chr5_4:26730892-26730911 None:intergenic 30.0%
TTTGATCGCTTATTAGGATT+CGG + chr5_4:26731188-26731207 None:intergenic 30.0%
TTCAAACTCAATGTCTAAGA+TGG - chr5_4:26731277-26731296 Msa0846540:intron 30.0%
! TCTTAGATGATGGTTATAGA+TGG - chr5_4:26731744-26731763 Msa0846540:intron 30.0%
TATGGACAGAAAGTTGTTAA+AGG - chr5_4:26731773-26731792 Msa0846540:intron 30.0%
TTAAAGGAAATCCTTATCCT+AGG - chr5_4:26731789-26731808 Msa0846540:intron 30.0%
CAATAGGTGAAATTAAAGTG+TGG + chr5_4:26731830-26731849 None:intergenic 30.0%
ATTCACGAATAGTTCACAAT+AGG + chr5_4:26731846-26731865 None:intergenic 30.0%
AATCGATGAACATGAAAAGT+TGG + chr5_4:26731944-26731963 None:intergenic 30.0%
GATAAATGAGACACACTATT+AGG + chr5_4:26731999-26732018 None:intergenic 30.0%
TATGTTGTTATGACTGCTTT+AGG + chr5_4:26732137-26732156 None:intergenic 30.0%
! TAACTGTGAAGCATTATTGT+TGG + chr5_4:26732216-26732235 None:intergenic 30.0%
AAAACTAGGCTTATCAGAAA+TGG + chr5_4:26732252-26732271 None:intergenic 30.0%
! ATTTCTGATAAGCCTAGTTT+TGG - chr5_4:26732251-26732270 Msa0846540:CDS 30.0%
AAACTCCTAAATTAAGACTC+TGG - chr5_4:26732348-26732367 Msa0846540:CDS 30.0%
GATTACCAGAGTCTTAATTT+AGG + chr5_4:26732356-26732375 None:intergenic 30.0%
ATCATCTGCGATATAGTTAT+CGG + chr5_4:26732378-26732397 None:intergenic 30.0%
TATCCTTTAACTCTATCATC+AGG + chr5_4:26732466-26732485 None:intergenic 30.0%
TTAAACGGAAAAAAAGTTGG+TGG - chr5_4:26732492-26732511 Msa0846540:five_prime_UTR 30.0%
AAACCAAGTTGTGTGTTCAA+CGG - chr5_4:26728552-26728571 Msa0846540:three_prime_UTR 35.0%
AAGTTAGAGAGAAGAGTCAT+AGG + chr5_4:26728715-26728734 None:intergenic 35.0%
! CTCTCTAACTTATTTGCTGA+TGG - chr5_4:26728724-26728743 Msa0846540:CDS 35.0%
! TTATTTGCTGATGGTGATGA+CGG - chr5_4:26728733-26728752 Msa0846540:CDS 35.0%
AGGATCAAATCAAACGCAAT+TGG + chr5_4:26729175-26729194 None:intergenic 35.0%
!!! TCCTTTTAAATTTCTAGCGG+CGG - chr5_4:26729191-26729210 Msa0846540:intron 35.0%
AGTCAGTTTGACCAAAAACA+AGG - chr5_4:26729483-26729502 Msa0846540:intron 35.0%
GACCTTGGAATTCTACATAA+AGG - chr5_4:26729613-26729632 Msa0846540:intron 35.0%
CACCTTTATGTAGAATTCCA+AGG + chr5_4:26729618-26729637 None:intergenic 35.0%
TCCGAAATACAACTTGGTAA+AGG - chr5_4:26729681-26729700 Msa0846540:CDS 35.0%
GCCTTTACCAAGTTGTATTT+CGG + chr5_4:26729685-26729704 None:intergenic 35.0%
TTGGTAAAGGCTCTTAAATC+TGG - chr5_4:26729694-26729713 Msa0846540:CDS 35.0%
GTAAATTTCACCGTGAAGTT+TGG - chr5_4:26729764-26729783 Msa0846540:CDS 35.0%
AACAGTGATTCTAGTGTGTT+TGG + chr5_4:26729865-26729884 None:intergenic 35.0%
TTACTGTGGGCAAAACATTT+GGG + chr5_4:26729921-26729940 None:intergenic 35.0%
TTTACTGTGGGCAAAACATT+TGG + chr5_4:26729922-26729941 None:intergenic 35.0%
! GTCAATAGTCCTCTCTTTTA+AGG - chr5_4:26730257-26730276 Msa0846540:intron 35.0%
! CAATAGTCCTCTCTTTTAAG+GGG - chr5_4:26730259-26730278 Msa0846540:intron 35.0%
!! AATAGTCCTCTCTTTTAAGG+GGG - chr5_4:26730260-26730279 Msa0846540:intron 35.0%
! GTTCTAAACTATGTAGGCTA+CGG + chr5_4:26730413-26730432 None:intergenic 35.0%
TTGATGCAGACTACTAATGA+TGG - chr5_4:26730600-26730619 Msa0846540:intron 35.0%
TTACTACTTCCAAGATAGTG+AGG - chr5_4:26730738-26730757 Msa0846540:intron 35.0%
CAATATCCACCATATGATGT+AGG - chr5_4:26730806-26730825 Msa0846540:intron 35.0%
CAAAGGATACCTACATCATA+TGG + chr5_4:26730818-26730837 None:intergenic 35.0%
CATATGATGTAGGTATCCTT+TGG - chr5_4:26730816-26730835 Msa0846540:intron 35.0%
CAGATGATAAATGTTCGACT+TGG + chr5_4:26730914-26730933 None:intergenic 35.0%
TTATCGACATTCAACGAAGA+AGG + chr5_4:26730984-26731003 None:intergenic 35.0%
! TTTTTCTTGACAGGACAGTT+AGG + chr5_4:26731098-26731117 None:intergenic 35.0%
TAACTGTCCTGTCAAGAAAA+AGG - chr5_4:26731097-26731116 Msa0846540:intron 35.0%
TTGATCGCTTATTAGGATTC+GGG + chr5_4:26731187-26731206 None:intergenic 35.0%
! GTGTCTTTTGATCGCTTATT+AGG + chr5_4:26731194-26731213 None:intergenic 35.0%
!! GTGCTGATTCAACTTATCAA+CGG - chr5_4:26731249-26731268 Msa0846540:intron 35.0%
! TACGAAAACTTACCTCCTTT+TGG + chr5_4:26731411-26731430 None:intergenic 35.0%
GTTCATTAATCAGGTGCATT+GGG + chr5_4:26731507-26731526 None:intergenic 35.0%
AGTTCATTAATCAGGTGCAT+TGG + chr5_4:26731508-26731527 None:intergenic 35.0%
CATAAAGGCAAAGGATTACT+CGG + chr5_4:26731604-26731623 None:intergenic 35.0%
ACAAGACAACATAAAGGCAA+AGG + chr5_4:26731613-26731632 None:intergenic 35.0%
ACAGTACTATGTGAAGTTGT+TGG + chr5_4:26731680-26731699 None:intergenic 35.0%
!! GTAGTTTGCACGATGATTTT+AGG + chr5_4:26731710-26731729 None:intergenic 35.0%
ATCTAAGAGATCAACTTCAC+TGG + chr5_4:26731732-26731751 None:intergenic 35.0%
! GAAGTTGATCTCTTAGATGA+TGG - chr5_4:26731734-26731753 Msa0846540:intron 35.0%
GGTTATAGATGGCGAAAATA+TGG - chr5_4:26731755-26731774 Msa0846540:intron 35.0%
TAGGTGAAATTAAAGTGTGG+AGG + chr5_4:26731827-26731846 None:intergenic 35.0%
TGAACTATTCGTGAATGTTG+TGG - chr5_4:26731850-26731869 Msa0846540:intron 35.0%
GCAGTCATAACAACATATGA+AGG - chr5_4:26732140-26732159 Msa0846540:intron 35.0%
CATTATTGTTGGCAATAGTG+TGG + chr5_4:26732205-26732224 None:intergenic 35.0%
ATACCAATGCTACCAAAACT+AGG + chr5_4:26732266-26732285 None:intergenic 35.0%
!!! AGTTTTGGTAGCATTGGTAT+TGG - chr5_4:26732266-26732285 Msa0846540:CDS 35.0%
AGTCCTGATGATAGAGTTAA+AGG - chr5_4:26732460-26732479 Msa0846540:exon 35.0%
!! AAAAAGTTGGTGGAGATAAC+AGG - chr5_4:26732502-26732521 Msa0846540:five_prime_UTR 35.0%
!! AAAAGTTGGTGGAGATAACA+GGG - chr5_4:26732503-26732522 Msa0846540:five_prime_UTR 35.0%
ATACTTTCGATGTACACAGA+AGG + chr5_4:26732550-26732569 None:intergenic 35.0%
! TGGTTTCTTTTCACATCCTC+AGG - chr5_4:26728831-26728850 Msa0846540:CDS 40.0%
TACCAACTGAGTTATGCTCA+CGG + chr5_4:26729021-26729040 None:intergenic 40.0%
GCATTATTATATGTAGGGGG+CGG - chr5_4:26729048-26729067 Msa0846540:intron 40.0%
CATTATTATATGTAGGGGGC+GGG - chr5_4:26729049-26729068 Msa0846540:intron 40.0%
ATTATTATATGTAGGGGGCG+GGG - chr5_4:26729050-26729069 Msa0846540:intron 40.0%
!!! TTTTTTCTCAGGTAGCCTAG+TGG + chr5_4:26729104-26729123 None:intergenic 40.0%
! TGTCTCATGTCATTTGCAGT+AGG - chr5_4:26729140-26729159 Msa0846540:intron 40.0%
TCCGCCGCTAGAAATTTAAA+AGG + chr5_4:26729195-26729214 None:intergenic 40.0%
!!! TTTTAAATTTCTAGCGGCGG+AGG - chr5_4:26729194-26729213 Msa0846540:intron 40.0%
!!! TGCACTGCACTAACCTTTTT+TGG + chr5_4:26729297-26729316 None:intergenic 40.0%
ATAGAAATGAAGGGCAAACG+AGG + chr5_4:26729327-26729346 None:intergenic 40.0%
! TTGGTCAAACTGACTCCTAT+AGG + chr5_4:26729478-26729497 None:intergenic 40.0%
!!! TTTTAGCCGTTTTGAGGTAG+AGG - chr5_4:26729591-26729610 Msa0846540:intron 40.0%
CCTGCCTGTTTCATGATAAA+GGG + chr5_4:26730366-26730385 None:intergenic 40.0%
TCCTGCCTGTTTCATGATAA+AGG + chr5_4:26730367-26730386 None:intergenic 40.0%
ACAGAGACACGTCTAATTTC+AGG + chr5_4:26730453-26730472 None:intergenic 40.0%
TATCAAGACACCAATGCACT+TGG + chr5_4:26730478-26730497 None:intergenic 40.0%
! AAGTGCATTGGTGTCTTGAT+AGG - chr5_4:26730477-26730496 Msa0846540:intron 40.0%
AGGATACCTACATCATATGG+TGG + chr5_4:26730815-26730834 None:intergenic 40.0%
GGCTACAATTGGAGGAAATA+TGG - chr5_4:26731017-26731036 Msa0846540:intron 40.0%
GAGGAAATATGGACAGAAAC+AGG - chr5_4:26731028-26731047 Msa0846540:intron 40.0%
TATGGACAGAAACAGGTGAA+AGG - chr5_4:26731035-26731054 Msa0846540:intron 40.0%
GTGCACTTGTAATAACTTCG+AGG + chr5_4:26731071-26731090 None:intergenic 40.0%
!!! AACTTACCTCCTTTTGGAGT+CGG + chr5_4:26731405-26731424 None:intergenic 40.0%
GAAGCATATCACCTAGGATA+AGG + chr5_4:26731803-26731822 None:intergenic 40.0%
GTTGTGGACCTCGTTAAATT+TGG - chr5_4:26731866-26731885 Msa0846540:intron 40.0%
TGCTTTCGAACGTTACAACT+CGG + chr5_4:26732092-26732111 None:intergenic 40.0%
!!! AAGCCTAGTTTTGGTAGCAT+TGG - chr5_4:26732260-26732279 Msa0846540:CDS 40.0%
!! TTTGGTAGCATTGGTATTGG+CGG - chr5_4:26732269-26732288 Msa0846540:CDS 40.0%
!! AAAGTTGGTGGAGATAACAG+GGG - chr5_4:26732504-26732523 Msa0846540:five_prime_UTR 40.0%
TGTGTGTTCAACGGTGGAAA+TGG - chr5_4:26728561-26728580 Msa0846540:three_prime_UTR 45.0%
GCTTCTTCTTCTTCCTTCCA+CGG + chr5_4:26728595-26728614 None:intergenic 45.0%
GTGGAAGGAAGAAGAAGAAG+CGG - chr5_4:26728594-26728613 Msa0846540:three_prime_UTR 45.0%
AGAGAAGAGTCATAGGACCA+GGG + chr5_4:26728708-26728727 None:intergenic 45.0%
ACCAGATGAATCAAACCCAC+CGG + chr5_4:26728815-26728834 None:intergenic 45.0%
ACCAACTGAGTTATGCTCAC+GGG + chr5_4:26729020-26729039 None:intergenic 45.0%
GTGAGCATAACTCAGTTGGT+AGG - chr5_4:26729020-26729039 Msa0846540:intron 45.0%
TAGCCTAGTGGCTAGAAAGT+GGG + chr5_4:26729092-26729111 None:intergenic 45.0%
CAAGGTCCTCTACCTCAAAA+CGG + chr5_4:26729600-26729619 None:intergenic 45.0%
! GTTTTGCCCACAGTAAAGCT+TGG - chr5_4:26729925-26729944 Msa0846540:CDS 45.0%
CCTCTTCCAAGCTTTACTGT+GGG + chr5_4:26729934-26729953 None:intergenic 45.0%
ACCTCTTCCAAGCTTTACTG+TGG + chr5_4:26729935-26729954 None:intergenic 45.0%
CCCTTTATCATGAAACAGGC+AGG - chr5_4:26730363-26730382 Msa0846540:intron 45.0%
! TTGCTGCTGTGTCATTCCAA+AGG + chr5_4:26730835-26730854 None:intergenic 45.0%
AGAAGGCTGCAACCTTTGTT+CGG + chr5_4:26730967-26730986 None:intergenic 45.0%
CCTCCAATTGTAGCCATCAT+CGG + chr5_4:26731012-26731031 None:intergenic 45.0%
! CGCTCAACCTTTTTCTTGAC+AGG + chr5_4:26731107-26731126 None:intergenic 45.0%
CTGTTGCCTGACTAGATTCA+GGG + chr5_4:26731304-26731323 None:intergenic 45.0%
GCAACAGGTGAACATCTATC+TGG - chr5_4:26731317-26731336 Msa0846540:intron 45.0%
! ATCTGGAACGAGTGATAGTG+AGG - chr5_4:26731334-26731353 Msa0846540:intron 45.0%
! ACGAGTGATAGTGAGGATGT+AGG - chr5_4:26731341-26731360 Msa0846540:intron 45.0%
AGGTGATCGTGAAACAGAAG+TGG - chr5_4:26731361-26731380 Msa0846540:intron 45.0%
!!! ACTTACCTCCTTTTGGAGTC+GGG + chr5_4:26731404-26731423 None:intergenic 45.0%
TCTTAGCTGCTGGAACATCA+TGG + chr5_4:26732175-26732194 None:intergenic 45.0%
!! TGGCTATTAGTCTTAGCTGC+TGG + chr5_4:26732185-26732204 None:intergenic 45.0%
!! TTGGTAGCATTGGTATTGGC+GGG - chr5_4:26732270-26732289 Msa0846540:CDS 45.0%
AACAACCTGTTGCTCGTCTA+AGG - chr5_4:26732303-26732322 Msa0846540:CDS 45.0%
CCACCGTTGAACACACAACT+TGG + chr5_4:26728558-26728577 None:intergenic 50.0%
CCAAGTTGTGTGTTCAACGG+TGG - chr5_4:26728555-26728574 Msa0846540:three_prime_UTR 50.0%
TCTTCTTCTTCCTTCCACGG+TGG + chr5_4:26728592-26728611 None:intergenic 50.0%
GAAGGAAGAAGAAGAAGCGG+CGG - chr5_4:26728597-26728616 Msa0846540:three_prime_UTR 50.0%
CTTAACTCTTCCGCCACGTA+CGG - chr5_4:26728657-26728676 Msa0846540:three_prime_UTR 50.0%
GAGAGAAGAGTCATAGGACC+AGG + chr5_4:26728709-26728728 None:intergenic 50.0%
AGATGAATCAAACCCACCGG+TGG + chr5_4:26728812-26728831 None:intergenic 50.0%
! ACCGGTGGGTTTGATTCATC+TGG - chr5_4:26728811-26728830 Msa0846540:CDS 50.0%
TCCCGTGAGCATAACTCAGT+TGG - chr5_4:26729016-26729035 Msa0846540:intron 50.0%
AGCCTAGTGGCTAGAAAGTG+GGG + chr5_4:26729091-26729110 None:intergenic 50.0%
GTAGCCTAGTGGCTAGAAAG+TGG + chr5_4:26729093-26729112 None:intergenic 50.0%
!!! CGTTTTGAGGTAGAGGACCT+TGG - chr5_4:26729598-26729617 Msa0846540:intron 50.0%
GGGCAAAACATTTGGGTCTC+TGG + chr5_4:26729914-26729933 None:intergenic 50.0%
CCCACAGTAAAGCTTGGAAG+AGG - chr5_4:26729931-26729950 Msa0846540:CDS 50.0%
GTCTCTGTGTCCAAGTGCAT+TGG - chr5_4:26730465-26730484 Msa0846540:intron 50.0%
! TTCGGAGAGAGGAGCATGAT+CGG + chr5_4:26730949-26730968 None:intergenic 50.0%
ATGCTCCTCTCTCCGAACAA+AGG - chr5_4:26730952-26730971 Msa0846540:intron 50.0%
TGCAACCTTTGTTCGGAGAG+AGG + chr5_4:26730960-26730979 None:intergenic 50.0%
CAATTGTAGCCATCATCGGC+AGG + chr5_4:26731008-26731027 None:intergenic 50.0%
! CTGCCGATGATGGCTACAAT+TGG - chr5_4:26731006-26731025 Msa0846540:intron 50.0%
! CCGATGATGGCTACAATTGG+AGG - chr5_4:26731009-26731028 Msa0846540:intron 50.0%
GATGGACCCTGAATCTAGTC+AGG - chr5_4:26731295-26731314 Msa0846540:intron 50.0%
CCTGTTGCCTGACTAGATTC+AGG + chr5_4:26731305-26731324 None:intergenic 50.0%
CCTGAATCTAGTCAGGCAAC+AGG - chr5_4:26731302-26731321 Msa0846540:intron 50.0%
GAATTGAGCCCGACTCCAAA+AGG - chr5_4:26731393-26731412 Msa0846540:intron 50.0%
! GGAGGAGAAGCATATCACCT+AGG + chr5_4:26731809-26731828 None:intergenic 50.0%
!! TGGTAGCATTGGTATTGGCG+GGG - chr5_4:26732271-26732290 Msa0846540:CDS 50.0%
TTCAGCCTTAGACGAGCAAC+AGG + chr5_4:26732311-26732330 None:intergenic 50.0%
! TGTTGCTCGTCTAAGGCTGA+AGG - chr5_4:26732310-26732329 Msa0846540:CDS 50.0%
CTTCTTCCTTCCACGGTGGT+CGG + chr5_4:26728588-26728607 None:intergenic 55.0%
GAAGAAGAAGAAGCGGCGGT+TGG - chr5_4:26728601-26728620 Msa0846540:three_prime_UTR 55.0%
AGAGTTAAGGTGGGTCGCTG+TGG + chr5_4:26728646-26728665 None:intergenic 55.0%
! CGTGGCGGAAGAGTTAAGGT+GGG + chr5_4:26728655-26728674 None:intergenic 55.0%
! ACGTGGCGGAAGAGTTAAGG+TGG + chr5_4:26728656-26728675 None:intergenic 55.0%
! CGTACGTGGCGGAAGAGTTA+AGG + chr5_4:26728659-26728678 None:intergenic 55.0%
! AAAAGTGCGTCCGTACGTGG+CGG + chr5_4:26728670-26728689 None:intergenic 55.0%
! GTGAAAAGTGCGTCCGTACG+TGG + chr5_4:26728673-26728692 None:intergenic 55.0%
! CGTACGGACGCACTTTTCAC+CGG - chr5_4:26728673-26728692 Msa0846540:exon 55.0%
!!! TTCACCGGTGGTTTTAGCCC+TGG - chr5_4:26728688-26728707 Msa0846540:exon 55.0%
AGGACCAGGGCTAAAACCAC+CGG + chr5_4:26728695-26728714 None:intergenic 55.0%
TCCTTCTCTCAGCTTCTCGC+CGG - chr5_4:26728760-26728779 Msa0846540:CDS 55.0%
TTCCATGGTGTCTCCGGCAA+CGG - chr5_4:26728783-26728802 Msa0846540:CDS 55.0%
! GCTAGAAAGTGGGGTGTCCA+TGG + chr5_4:26729082-26729101 None:intergenic 55.0%
! CACCCCACTTTCTAGCCACT+AGG - chr5_4:26729086-26729105 Msa0846540:intron 55.0%
CGGTCACCCCCTTAAAAGAG+AGG + chr5_4:26730269-26730288 None:intergenic 55.0%
ACAGCAGCAACCACTGACAC+AGG - chr5_4:26730845-26730864 Msa0846540:intron 55.0%
GCAACCACTGACACAGGTCT+CGG - chr5_4:26730851-26730870 Msa0846540:intron 55.0%
GGAGCATGATCGGTGGATGT+TGG + chr5_4:26730939-26730958 None:intergenic 55.0%
GTCGATAAGCCTGCCGATGA+TGG - chr5_4:26730996-26731015 Msa0846540:intron 55.0%
AAGGTTGAGCGTTCGCTTGC+TGG - chr5_4:26731116-26731135 Msa0846540:intron 55.0%
TTGAGCCCGACTCCAAAAGG+AGG - chr5_4:26731396-26731415 Msa0846540:intron 55.0%
!! GGTAGCATTGGTATTGGCGG+GGG - chr5_4:26732272-26732291 Msa0846540:CDS 55.0%
TGGAAATGGACCGACCACCG+TGG - chr5_4:26728575-26728594 Msa0846540:three_prime_UTR 60.0%
AATGGACCGACCACCGTGGA+AGG - chr5_4:26728579-26728598 Msa0846540:three_prime_UTR 60.0%
GAAGAAGAAGCGGCGGTTGG+CGG - chr5_4:26728604-26728623 Msa0846540:three_prime_UTR 60.0%
GTTAAGGTGGGTCGCTGTGG+TGG + chr5_4:26728643-26728662 None:intergenic 60.0%
! ACGGACGCACTTTTCACCGG+TGG - chr5_4:26728676-26728695 Msa0846540:exon 60.0%
ACCGGCGAGAAGCTGAGAGA+AGG + chr5_4:26728764-26728783 None:intergenic 60.0%
!! TCAGCTTCTCGCCGGTTCCA+TGG - chr5_4:26728768-26728787 Msa0846540:CDS 60.0%
TGCCGGAGACACCATGGAAC+CGG + chr5_4:26728782-26728801 None:intergenic 60.0%
TACCGTTGCCGGAGACACCA+TGG + chr5_4:26728788-26728807 None:intergenic 60.0%
TCTCCGGCAACGGTAACCAC+CGG - chr5_4:26728793-26728812 Msa0846540:CDS 60.0%
TGAGCCGAGACCTGTGTCAG+TGG + chr5_4:26730858-26730877 None:intergenic 60.0%
ACACAGGTCTCGGCTCACGA+AGG - chr5_4:26730861-26730880 Msa0846540:intron 60.0%
! GGAGAGAGGAGCATGATCGG+TGG + chr5_4:26730946-26730965 None:intergenic 60.0%
!! CGCCGGTTCCATGGTGTCTC+CGG - chr5_4:26728777-26728796 Msa0846540:CDS 65.0%
CCACCGGTGGTTACCGTTGC+CGG + chr5_4:26728799-26728818 None:intergenic 65.0%
CGGCAACGGTAACCACCGGT+GGG - chr5_4:26728797-26728816 Msa0846540:CDS 65.0%
GAAGAAGCGGCGGTTGGCGG+TGG - chr5_4:26728607-26728626 Msa0846540:three_prime_UTR 70.0%
CGGCGGTTGGCGGTGGTGAA+GGG - chr5_4:26728614-26728633 Msa0846540:three_prime_UTR 70.0%
GGCGGTTGGCGGTGGTGAAG+GGG - chr5_4:26728615-26728634 Msa0846540:three_prime_UTR 70.0%
GCGGTTGGCGGTGGTGAAGG+GGG - chr5_4:26728616-26728635 Msa0846540:three_prime_UTR 70.0%
CGGTTGGCGGTGGTGAAGGG+GGG - chr5_4:26728617-26728636 Msa0846540:three_prime_UTR 70.0%
CCGGCAACGGTAACCACCGG+TGG - chr5_4:26728796-26728815 Msa0846540:CDS 70.0%
AGGGGGCGGGGTTCGAACCA+TGG - chr5_4:26729062-26729081 Msa0846540:intron 70.0%
GCGGCGGTTGGCGGTGGTGA+AGG - chr5_4:26728613-26728632 Msa0846540:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 26728362 26732679 26728362 ID=Msa0846540;Name=Msa0846540
chr5_4 mRNA 26728362 26732679 26728362 ID=Msa0846540-mRNA-1;Parent=Msa0846540;Name=Msa0846540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=218|1|1|1|1|1|4|330|434
chr5_4 exon 26728362 26728974 26728362 ID=Msa0846540-mRNA-1:exon:10456;Parent=Msa0846540-mRNA-1
chr5_4 exon 26729231 26729389 26729231 ID=Msa0846540-mRNA-1:exon:10455;Parent=Msa0846540-mRNA-1
chr5_4 exon 26729624 26730213 26729624 ID=Msa0846540-mRNA-1:exon:10454;Parent=Msa0846540-mRNA-1
chr5_4 exon 26732189 26732679 26732189 ID=Msa0846540-mRNA-1:exon:10453;Parent=Msa0846540-mRNA-1
chr5_4 five_prime_UTR 26732462 26732679 26732462 ID=Msa0846540-mRNA-1:five_prime_utr;Parent=Msa0846540-mRNA-1
chr5_4 CDS 26732189 26732461 26732189 ID=Msa0846540-mRNA-1:cds;Parent=Msa0846540-mRNA-1
chr5_4 CDS 26729624 26730213 26729624 ID=Msa0846540-mRNA-1:cds;Parent=Msa0846540-mRNA-1
chr5_4 CDS 26729231 26729389 26729231 ID=Msa0846540-mRNA-1:cds;Parent=Msa0846540-mRNA-1
chr5_4 CDS 26728692 26728974 26728692 ID=Msa0846540-mRNA-1:cds;Parent=Msa0846540-mRNA-1
chr5_4 three_prime_UTR 26728362 26728691 26728362 ID=Msa0846540-mRNA-1:three_prime_utr;Parent=Msa0846540-mRNA-1
Gene Sequence

>Msa0846540

ATGGACCGACCACCGTGGAAGGAAGAAGAAGAAGCGGCGGTTGGCGGTGGTGAAGGGGGGCCACCACAGCGACCCACCTTAACTCTTCCGCCACGTACGGACGCACTTTTCACCGGTGGTTTTAGCCCTGGTCCTATGACTCTTCTCTCTAACTTATTTGCTGATGGTGATGACGGCAAGTCCTTCTCTCAGCTTCTCGCCGGTTCCATGGTGTCTCCGGCAACGGTAACCACCGGTGGGTTTGATTCATCTGGTTTCTTTTCACATCCTCAGGTATCCTTTGGAATGACACAGCAGCAACCACTGACACAGGTCTCGGCTCACGAAGGACAATCCAACAGTACTAATATGCATAACCAAGTCGAACATTTATCATCTGTACCAACATCCACCGATCATGCTCCTCTCTCCGAACAAAGGTTGCAGCCTTCTTCGTTGAATGTCGATAAGCCTGCCGATGATGGCTACAATTGGAGGAAATATGGACAGAAACAGGTGAAAGGTAGCGAGTTTCCTCGAAGTTATTACAAGTGCACGCATCCTAACTGTCCTGTCAAGAAAAAGGTTGAGCGTTCGCTTGCTGGTCATATAACCGCAATTATTTATAAAGGAGAGCACAATCATCAACTCCCGAATCCTAATAAGCGATCAAAAGACACTGTAACTTCAAATGAAAATTCAAATAGGCAAGGGAGTGCTGATTCAACTTATCAACGGATGACTTCAAACTCAATGTCTAAGATGGACCCTGAATCTAGTCAGGCAACAGGTGAACATCTATCTGGAACGAGTGATAGTGAGGATGTAGGTGATCGTGAAACAGAAGTGGATGAGAAAAGAATTGAGCCCGACTCCAAAAGGAGACATACAGAAGTCACAGTCTCAAATCCAACAACTTCACATAGTACTGTCACAGAGCCTAAAATCATCGTGCAAACTACCAGTGAAGTTGATCTCTTAGATGATGGTTATAGATGGCGAAAATATGGACAGAAAGTTGTTAAAGGAAATCCTTATCCTAGGAGCTATTACAAATGTACAACACCGAGTTGTAACGTTCGAAAGCATGTAGAGAGAGCATCGACAGATCCTAAAGCAGTCATAACAACATATGAAGGAAAACATAACCATGATGTTCCAGCAGCTAAGACTAATAGCCACACTATTGCCAACAATAATGCTTCACAGTTAAAATCGCAAAATACCATTTCTGATAAGCCTAGTTTTGGTAGCATTGGTATTGGCGGGGGCAATGAGCAACAACCTGTTGCTCGTCTAAGGCTGAAGGAAGAGCAGATAACTTAA
Protein sequence

>Msa0846540

MDRPPWKEEEEAAVGGGEGGPPQRPTLTLPPRTDALFTGGFSPGPMTLLSNLFADGDDGKSFSQLLAGSMVSPATVTTGGFDSSGFFSHPQVSFGMTQQQPLTQVSAHEGQSNSTNMHNQVEHLSSVPTSTDHAPLSEQRLQPSSLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLAGHITAIIYKGEHNHQLPNPNKRSKDTVTSNENSNRQGSADSTYQRMTSNSMSKMDPESSQATGEHLSGTSDSEDVGDRETEVDEKRIEPDSKRRHTEVTVSNPTTSHSTVTEPKIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPSCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNNASQLKSQNTISDKPSFGSIGIGGGNEQQPVARLRLKEEQIT*