AlfalfaGEDB | Msa0846920

M. sativa cultivar zhongmu-4 / Msa0846920

KEGG: K14489
GO: GO:0000160 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004721 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008152 GO:0008272 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009743 GO:0009744 GO:0009755 GO:0009784 GO:0009790 GO:0009884 GO:0009885 GO:0009987 GO:0009991 GO:0010015 GO:0010029 GO:0010033 GO:0010035 GO:0010086 GO:0012505 GO:0015698 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016787 GO:0016788 GO:0016791 GO:0018106 GO:0018193 GO:0018202 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022622 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032870 GO:0033500 GO:0033554 GO:0034285 GO:0035556 GO:0036211 GO:0038023 GO:0042221 GO:0042578 GO:0042592 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048509 GO:0048580 GO:0048598 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071470 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0072348 GO:0098542 GO:0099402 GO:0104004 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1905392 GO:2000026
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846920	AES97003.2	73.611	144	29	3	4	146	75	210	1.50e-59	194

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846920	sp\|Q9C5U0\|AHK4_ARATH	50.714	140	46	4	28	146	866	1003	5.13e-33	125

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846920	G7JWS8	73.611	144	29	3	4	146	75	210	7.15e-60	194

TFs/TRs:

Gene ID	Type	Classification
Msa0846920	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846920	MtrunA17_Chr8g0392301	59.873	157	39	5	12	146	765	919	2.18e-48	166
Msa0846920	MtrunA17_Chr3g0122391	54.082	98	39	2	53	146	862	957	3.26e-25	100
Msa0846920	MtrunA17_Chr8g0377481	51.546	97	42	2	53	146	805	899	1.93e-22	92.0
Msa0846920	MtrunA17_Chr5g0447641	41.549	142	57	5	28	146	994	1132	5.82e-22	90.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846920	AT2G01830.2	50.714	140	46	4	28	146	866	1003	5.21e-34	125
Msa0846920	AT2G01830.1	50.714	140	46	4	28	146	843	980	5.51e-34	125
Msa0846920	AT2G01830.4	50.714	140	46	4	28	146	843	980	5.51e-34	125
Msa0846920	AT2G01830.6	50.714	140	46	4	28	146	843	980	5.51e-34	125
Msa0846920	AT2G01830.3	50.714	140	46	4	28	146	843	980	5.51e-34	125
Msa0846920	AT2G01830.5	50.714	140	46	4	28	146	855	992	7.17e-34	125
Msa0846920	AT1G27320.1	46.377	138	52	4	29	146	813	948	2.77e-26	103
Msa0846920	AT5G35750.1	44.138	145	61	4	20	146	951	1093	1.38e-25	101

Find 29 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTGCTAGAAGAATCATTT+TGG	0.207805	5_4:-27761168	None:intergenic
AAATTCAGTGCTGTTAATAT+TGG	0.260654	5_4:-27761189	None:intergenic
GCTTGCCTTCGGCAAGTTCT+TGG	0.268331	5_4:+27761233	Msa0846920:CDS
TAAATTTGATGCTTGCTTCA+TGG	0.287393	5_4:+27761460	Msa0846920:CDS
CTGCAGCTGCAGCTACCTTC+TGG	0.311196	5_4:-27761358	None:intergenic
TTAACAGCACTGAATTTGAT+AGG	0.313476	5_4:+27761195	Msa0846920:CDS
GTCCTCAACCATGACAATAA+TGG	0.330041	5_4:-27761083	None:intergenic
TGAATTTGATAGGGCTAGTA+TGG	0.357246	5_4:+27761205	Msa0846920:CDS
CTTCGGCAAGTTCTTGGAAT+GGG	0.359478	5_4:+27761239	Msa0846920:CDS
TCCTCAACCATGACAATAAT+GGG	0.374360	5_4:-27761082	None:intergenic
TCTCCATAGCAAGAAAATAT+TGG	0.389020	5_4:+27761313	Msa0846920:CDS
GGACATTCAAATGTTAGAAA+TGG	0.392857	5_4:+27761481	Msa0846920:CDS
CCTTCGGCAAGTTCTTGGAA+TGG	0.436627	5_4:+27761238	Msa0846920:CDS
GCCCATTATTGTCATGGTTG+AGG	0.483681	5_4:+27761081	Msa0846920:CDS
GTATGGTGGCTGCTTGCCTT+CGG	0.489568	5_4:+27761222	Msa0846920:CDS
AAGCAAGCATCAAATTTATG+AGG	0.496655	5_4:-27761455	None:intergenic
ATTCAAATGTTAGAAATGGA+TGG	0.501542	5_4:+27761485	Msa0846920:CDS
GAGAAGGCTTTGTAGAAAAG+AGG	0.518294	5_4:-27761294	None:intergenic
GTTCGTGCCCATTATTGTCA+TGG	0.547245	5_4:+27761075	Msa0846920:CDS
TTCAAATGTTAGAAATGGAT+GGG	0.548625	5_4:+27761486	Msa0846920:CDS
TAACAGCACTGAATTTGATA+GGG	0.556919	5_4:+27761196	Msa0846920:CDS
CCATAGCAAGAAAATATTGG+TGG	0.586834	5_4:+27761316	Msa0846920:CDS
TTCGGCAAGTTCTTGGAATG+GGG	0.612266	5_4:+27761240	Msa0846920:CDS
TGACAATTGCATAAACCAGA+AGG	0.629214	5_4:+27761343	Msa0846920:CDS
TTGTCATGGTTGAGGACACA+TGG	0.655815	5_4:+27761089	Msa0846920:CDS
ATTTGATAGGGCTAGTATGG+TGG	0.659564	5_4:+27761208	Msa0846920:CDS
CCATTCCAAGAACTTGCCGA+AGG	0.677575	5_4:-27761238	None:intergenic
GATGTGAAGTGTGTTGAAAG+CGG	0.691717	5_4:+27761404	Msa0846920:CDS
TCATGGTTGAGGACACATGG+TGG	0.761656	5_4:+27761092	Msa0846920:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ACAGATATATAAACTTATAA+AGG	-	chr5_4:27760458-27760477	None:intergenic	15.0%
!!	ACAGATATATAAACTTATAA+AGG	-	chr5_4:27760458-27760477	None:intergenic	15.0%
!!!	CAAAATTTAGTTCACAAATT+TGG	+	chr5_4:27761007-27761026	Msa0846920:intron	20.0%
!!!	CAAAATTTAGTTCACAAATT+TGG	+	chr5_4:27761007-27761026	Msa0846920:intron	20.0%
!	ATATATCTGTGTGTTATCAT+TGG	+	chr5_4:27760468-27760487	Msa0846920:intron	25.0%
!	AAGTTGAGATGTTAATTGAT+TGG	+	chr5_4:27760569-27760588	Msa0846920:intron	25.0%
!	AGCAATGAAACTAAGAAAAT+TGG	-	chr5_4:27760604-27760623	None:intergenic	25.0%
!!	TTTTCTTAGTTTCATTGCTT+TGG	+	chr5_4:27760605-27760624	Msa0846920:intron	25.0%
!	GATTAAAGCCATATTTGATA+AGG	+	chr5_4:27760630-27760649	Msa0846920:intron	25.0%
!!	TTTGAGATTGGAAAATCAAT+AGG	+	chr5_4:27760939-27760958	Msa0846920:intron	25.0%
!	AATCAATATACTTGTCTATG+TGG	+	chr5_4:27761046-27761065	Msa0846920:intron	25.0%
!!	AAATTCAGTGCTGTTAATAT+TGG	-	chr5_4:27761192-27761211	None:intergenic	25.0%
!	ATATATCTGTGTGTTATCAT+TGG	+	chr5_4:27760468-27760487	Msa0846920:intron	25.0%
!	AAGTTGAGATGTTAATTGAT+TGG	+	chr5_4:27760569-27760588	Msa0846920:intron	25.0%
!	AGCAATGAAACTAAGAAAAT+TGG	-	chr5_4:27760604-27760623	None:intergenic	25.0%
!!	TTTTCTTAGTTTCATTGCTT+TGG	+	chr5_4:27760605-27760624	Msa0846920:intron	25.0%
!	GATTAAAGCCATATTTGATA+AGG	+	chr5_4:27760630-27760649	Msa0846920:intron	25.0%
!!	TTTGAGATTGGAAAATCAAT+AGG	+	chr5_4:27760939-27760958	Msa0846920:intron	25.0%
!	AATCAATATACTTGTCTATG+TGG	+	chr5_4:27761046-27761065	Msa0846920:intron	25.0%
!!	AAATTCAGTGCTGTTAATAT+TGG	-	chr5_4:27761192-27761211	None:intergenic	25.0%
!	AACTAGCTTCATGTAAAACT+GGG	-	chr5_4:27760704-27760723	None:intergenic	30.0%
!!	TTTTACATGAAGCTAGTTCT+AGG	+	chr5_4:27760706-27760725	Msa0846920:intron	30.0%
	CTCAAGTAGTTATTACATGA+CGG	-	chr5_4:27760879-27760898	None:intergenic	30.0%
!!!	TCAGTTCTTTTCTTTGAGAT+TGG	+	chr5_4:27760927-27760946	Msa0846920:intron	30.0%
!	GTTGCTAGAAGAATCATTTT+GGG	-	chr5_4:27761170-27761189	None:intergenic	30.0%
!	TTAACAGCACTGAATTTGAT+AGG	+	chr5_4:27761195-27761214	Msa0846920:CDS	30.0%
!	TAACAGCACTGAATTTGATA+GGG	+	chr5_4:27761196-27761215	Msa0846920:CDS	30.0%
!!	ATATTTTCTTGCTATGGAGA+AGG	-	chr5_4:27761313-27761332	None:intergenic	30.0%
	TCTCCATAGCAAGAAAATAT+TGG	+	chr5_4:27761313-27761332	Msa0846920:CDS	30.0%
	GCAGATGCATTAAAAAAGTT+TGG	+	chr5_4:27761377-27761396	Msa0846920:CDS	30.0%
	AAGCAAGCATCAAATTTATG+AGG	-	chr5_4:27761458-27761477	None:intergenic	30.0%
	TAAATTTGATGCTTGCTTCA+TGG	+	chr5_4:27761460-27761479	Msa0846920:CDS	30.0%
	GGACATTCAAATGTTAGAAA+TGG	+	chr5_4:27761481-27761500	Msa0846920:CDS	30.0%
!	AACTAGCTTCATGTAAAACT+GGG	-	chr5_4:27760704-27760723	None:intergenic	30.0%
!!	TTTTACATGAAGCTAGTTCT+AGG	+	chr5_4:27760706-27760725	Msa0846920:intron	30.0%
	CTCAAGTAGTTATTACATGA+CGG	-	chr5_4:27760879-27760898	None:intergenic	30.0%
!!!	TCAGTTCTTTTCTTTGAGAT+TGG	+	chr5_4:27760927-27760946	Msa0846920:intron	30.0%
!	GTTGCTAGAAGAATCATTTT+GGG	-	chr5_4:27761170-27761189	None:intergenic	30.0%
!	TTAACAGCACTGAATTTGAT+AGG	+	chr5_4:27761195-27761214	Msa0846920:CDS	30.0%
!	TAACAGCACTGAATTTGATA+GGG	+	chr5_4:27761196-27761215	Msa0846920:CDS	30.0%
!!	ATATTTTCTTGCTATGGAGA+AGG	-	chr5_4:27761313-27761332	None:intergenic	30.0%
	TCTCCATAGCAAGAAAATAT+TGG	+	chr5_4:27761313-27761332	Msa0846920:CDS	30.0%
	GCAGATGCATTAAAAAAGTT+TGG	+	chr5_4:27761377-27761396	Msa0846920:CDS	30.0%
	AAGCAAGCATCAAATTTATG+AGG	-	chr5_4:27761458-27761477	None:intergenic	30.0%
	TAAATTTGATGCTTGCTTCA+TGG	+	chr5_4:27761460-27761479	Msa0846920:CDS	30.0%
	GGACATTCAAATGTTAGAAA+TGG	+	chr5_4:27761481-27761500	Msa0846920:CDS	30.0%
!!!	CAGCATTTTCTAAAGCTTAG+TGG	+	chr5_4:27760384-27760403	Msa0846920:intron	35.0%
!!	TTTCTAAAGCTTAGTGGTAG+TGG	+	chr5_4:27760390-27760409	Msa0846920:intron	35.0%
!	GGAGAAATCTGACTTGAAAA+AGG	+	chr5_4:27760411-27760430	Msa0846920:intron	35.0%
	CATCAAATCTATCTGATTGC+TGG	+	chr5_4:27760532-27760551	Msa0846920:intron	35.0%
!!	CTCTGGAACCTTATCAAATA+TGG	-	chr5_4:27760641-27760660	None:intergenic	35.0%
	AAAGTAAAATTGCACTGCTC+TGG	-	chr5_4:27760658-27760677	None:intergenic	35.0%
!	AGAGCAGTGCAATTTTACTT+TGG	+	chr5_4:27760657-27760676	Msa0846920:intron	35.0%
!	GAACTAGCTTCATGTAAAAC+TGG	-	chr5_4:27760705-27760724	None:intergenic	35.0%
	GTCAAACATTGCACTTGAAT+TGG	+	chr5_4:27760738-27760757	Msa0846920:intron	35.0%
	TCCTCAACCATGACAATAAT+GGG	-	chr5_4:27761085-27761104	None:intergenic	35.0%
!	GGTTGCTAGAAGAATCATTT+TGG	-	chr5_4:27761171-27761190	None:intergenic	35.0%
!	TGAATTTGATAGGGCTAGTA+TGG	+	chr5_4:27761205-27761224	Msa0846920:CDS	35.0%
	TTCTTGGAATGGGGTAAAAA+AGG	+	chr5_4:27761249-27761268	Msa0846920:intron	35.0%
	ATGGGGTAAAAAAGGAAGAT+AGG	+	chr5_4:27761257-27761276	Msa0846920:intron	35.0%
	TGGGGTAAAAAAGGAAGATA+GGG	+	chr5_4:27761258-27761277	Msa0846920:intron	35.0%
!	CCACCAATATTTTCTTGCTA+TGG	-	chr5_4:27761319-27761338	None:intergenic	35.0%
	CCATAGCAAGAAAATATTGG+TGG	+	chr5_4:27761316-27761335	Msa0846920:CDS	35.0%
	TGACAATTGCATAAACCAGA+AGG	+	chr5_4:27761343-27761362	Msa0846920:CDS	35.0%
!!!	CAGCATTTTCTAAAGCTTAG+TGG	+	chr5_4:27760384-27760403	Msa0846920:intron	35.0%
!!	TTTCTAAAGCTTAGTGGTAG+TGG	+	chr5_4:27760390-27760409	Msa0846920:intron	35.0%
!	GGAGAAATCTGACTTGAAAA+AGG	+	chr5_4:27760411-27760430	Msa0846920:intron	35.0%
	CATCAAATCTATCTGATTGC+TGG	+	chr5_4:27760532-27760551	Msa0846920:intron	35.0%
!!	CTCTGGAACCTTATCAAATA+TGG	-	chr5_4:27760641-27760660	None:intergenic	35.0%
	AAAGTAAAATTGCACTGCTC+TGG	-	chr5_4:27760658-27760677	None:intergenic	35.0%
!	AGAGCAGTGCAATTTTACTT+TGG	+	chr5_4:27760657-27760676	Msa0846920:intron	35.0%
!	GAACTAGCTTCATGTAAAAC+TGG	-	chr5_4:27760705-27760724	None:intergenic	35.0%
	GTCAAACATTGCACTTGAAT+TGG	+	chr5_4:27760738-27760757	Msa0846920:intron	35.0%
	TCCTCAACCATGACAATAAT+GGG	-	chr5_4:27761085-27761104	None:intergenic	35.0%
!	GGTTGCTAGAAGAATCATTT+TGG	-	chr5_4:27761171-27761190	None:intergenic	35.0%
!	TGAATTTGATAGGGCTAGTA+TGG	+	chr5_4:27761205-27761224	Msa0846920:CDS	35.0%
	TTCTTGGAATGGGGTAAAAA+AGG	+	chr5_4:27761249-27761268	Msa0846920:intron	35.0%
	ATGGGGTAAAAAAGGAAGAT+AGG	+	chr5_4:27761257-27761276	Msa0846920:intron	35.0%
	TGGGGTAAAAAAGGAAGATA+GGG	+	chr5_4:27761258-27761277	Msa0846920:intron	35.0%
!	CCACCAATATTTTCTTGCTA+TGG	-	chr5_4:27761319-27761338	None:intergenic	35.0%
	CCATAGCAAGAAAATATTGG+TGG	+	chr5_4:27761316-27761335	Msa0846920:CDS	35.0%
	TGACAATTGCATAAACCAGA+AGG	+	chr5_4:27761343-27761362	Msa0846920:CDS	35.0%
	TGAATTGGCATGTAGCAAAG+AGG	+	chr5_4:27760753-27760772	Msa0846920:intron	40.0%
	GAATTGGCATGTAGCAAAGA+GGG	+	chr5_4:27760754-27760773	Msa0846920:intron	40.0%
	TGTCATTGCTCACTGAATCA+TGG	+	chr5_4:27760793-27760812	Msa0846920:intron	40.0%
	GTCCTCAACCATGACAATAA+TGG	-	chr5_4:27761086-27761105	None:intergenic	40.0%
!	ATTTGATAGGGCTAGTATGG+TGG	+	chr5_4:27761208-27761227	Msa0846920:CDS	40.0%
!	GAGAAGGCTTTGTAGAAAAG+AGG	-	chr5_4:27761297-27761316	None:intergenic	40.0%
	GATGTGAAGTGTGTTGAAAG+CGG	+	chr5_4:27761404-27761423	Msa0846920:CDS	40.0%
	TGAATTGGCATGTAGCAAAG+AGG	+	chr5_4:27760753-27760772	Msa0846920:intron	40.0%
	GAATTGGCATGTAGCAAAGA+GGG	+	chr5_4:27760754-27760773	Msa0846920:intron	40.0%
	TGTCATTGCTCACTGAATCA+TGG	+	chr5_4:27760793-27760812	Msa0846920:intron	40.0%
	GTCCTCAACCATGACAATAA+TGG	-	chr5_4:27761086-27761105	None:intergenic	40.0%
!	ATTTGATAGGGCTAGTATGG+TGG	+	chr5_4:27761208-27761227	Msa0846920:CDS	40.0%
!	GAGAAGGCTTTGTAGAAAAG+AGG	-	chr5_4:27761297-27761316	None:intergenic	40.0%
	GATGTGAAGTGTGTTGAAAG+CGG	+	chr5_4:27761404-27761423	Msa0846920:CDS	40.0%
	ACTGAATCATGGTACATGCG+AGG	+	chr5_4:27760804-27760823	Msa0846920:intron	45.0%
	GCTAAATCCATTCCACACCA+AGG	+	chr5_4:27760846-27760865	Msa0846920:intron	45.0%
	ATCCATTCCACACCAAGGAT+TGG	+	chr5_4:27760851-27760870	Msa0846920:intron	45.0%
	GTTCGTGCCCATTATTGTCA+TGG	+	chr5_4:27761075-27761094	Msa0846920:CDS	45.0%
	GCCCATTATTGTCATGGTTG+AGG	+	chr5_4:27761081-27761100	Msa0846920:CDS	45.0%
	TTGTCATGGTTGAGGACACA+TGG	+	chr5_4:27761089-27761108	Msa0846920:CDS	45.0%
	CTTCGGCAAGTTCTTGGAAT+GGG	+	chr5_4:27761239-27761258	Msa0846920:CDS	45.0%
	TTCGGCAAGTTCTTGGAATG+GGG	+	chr5_4:27761240-27761259	Msa0846920:CDS	45.0%
	ACTGAATCATGGTACATGCG+AGG	+	chr5_4:27760804-27760823	Msa0846920:intron	45.0%
	GCTAAATCCATTCCACACCA+AGG	+	chr5_4:27760846-27760865	Msa0846920:intron	45.0%
	ATCCATTCCACACCAAGGAT+TGG	+	chr5_4:27760851-27760870	Msa0846920:intron	45.0%
	GTTCGTGCCCATTATTGTCA+TGG	+	chr5_4:27761075-27761094	Msa0846920:CDS	45.0%
	GCCCATTATTGTCATGGTTG+AGG	+	chr5_4:27761081-27761100	Msa0846920:CDS	45.0%
	TTGTCATGGTTGAGGACACA+TGG	+	chr5_4:27761089-27761108	Msa0846920:CDS	45.0%
	CTTCGGCAAGTTCTTGGAAT+GGG	+	chr5_4:27761239-27761258	Msa0846920:CDS	45.0%
	TTCGGCAAGTTCTTGGAATG+GGG	+	chr5_4:27761240-27761259	Msa0846920:CDS	45.0%
!	TGCCAATCCTTGGTGTGGAA+TGG	-	chr5_4:27760856-27760875	None:intergenic	50.0%
!	TACATGACGGTGCCAATCCT+TGG	-	chr5_4:27760866-27760885	None:intergenic	50.0%
	TCATGGTTGAGGACACATGG+TGG	+	chr5_4:27761092-27761111	Msa0846920:CDS	50.0%
	CCATTCCAAGAACTTGCCGA+AGG	-	chr5_4:27761241-27761260	None:intergenic	50.0%
	CCTTCGGCAAGTTCTTGGAA+TGG	+	chr5_4:27761238-27761257	Msa0846920:CDS	50.0%
!	TGCCAATCCTTGGTGTGGAA+TGG	-	chr5_4:27760856-27760875	None:intergenic	50.0%
!	TACATGACGGTGCCAATCCT+TGG	-	chr5_4:27760866-27760885	None:intergenic	50.0%
	TCATGGTTGAGGACACATGG+TGG	+	chr5_4:27761092-27761111	Msa0846920:CDS	50.0%
	CCATTCCAAGAACTTGCCGA+AGG	-	chr5_4:27761241-27761260	None:intergenic	50.0%
	CCTTCGGCAAGTTCTTGGAA+TGG	+	chr5_4:27761238-27761257	Msa0846920:CDS	50.0%
	GTATGGTGGCTGCTTGCCTT+CGG	+	chr5_4:27761222-27761241	Msa0846920:CDS	55.0%
	GCTTGCCTTCGGCAAGTTCT+TGG	+	chr5_4:27761233-27761252	Msa0846920:CDS	55.0%
	GTATGGTGGCTGCTTGCCTT+CGG	+	chr5_4:27761222-27761241	Msa0846920:CDS	55.0%
	GCTTGCCTTCGGCAAGTTCT+TGG	+	chr5_4:27761233-27761252	Msa0846920:CDS	55.0%
!	GACGGTGCCAATCCTTGGTG+TGG	-	chr5_4:27760861-27760880	None:intergenic	60.0%
	CTGCAGCTGCAGCTACCTTC+TGG	-	chr5_4:27761361-27761380	None:intergenic	60.0%
!	GACGGTGCCAATCCTTGGTG+TGG	-	chr5_4:27760861-27760880	None:intergenic	60.0%
	CTGCAGCTGCAGCTACCTTC+TGG	-	chr5_4:27761361-27761380	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	27760375	27761505	27760375	ID=Msa0846920;Name=Msa0846920
chr5_4	mRNA	27760375	27761505	27760375	ID=Msa0846920-mRNA-1;Parent=Msa0846920;Name=Msa0846920-mRNA-1;_AED=0.42;_eAED=0.43;_QI=0\|0\|0\|1\|0.33\|0\|4\|0\|146
chr5_4	exon	27760375	27760381	27760375	ID=Msa0846920-mRNA-1:exon:10634;Parent=Msa0846920-mRNA-1
chr5_4	exon	27760971	27760976	27760971	ID=Msa0846920-mRNA-1:exon:10635;Parent=Msa0846920-mRNA-1
chr5_4	exon	27761072	27761261	27761072	ID=Msa0846920-mRNA-1:exon:10636;Parent=Msa0846920-mRNA-1
chr5_4	exon	27761271	27761505	27761271	ID=Msa0846920-mRNA-1:exon:10637;Parent=Msa0846920-mRNA-1
chr5_4	CDS	27760375	27760381	27760375	ID=Msa0846920-mRNA-1:cds;Parent=Msa0846920-mRNA-1
chr5_4	CDS	27760971	27760976	27760971	ID=Msa0846920-mRNA-1:cds;Parent=Msa0846920-mRNA-1
chr5_4	CDS	27761072	27761261	27761072	ID=Msa0846920-mRNA-1:cds;Parent=Msa0846920-mRNA-1
chr5_4	CDS	27761271	27761505	27761271	ID=Msa0846920-mRNA-1:cds;Parent=Msa0846920-mRNA-1

Gene Sequence

>Msa0846920

ATGAAATTTCAGAAATGTTCGTGCCCATTATTGTCATGGTTGAGGACACATGGTGGTTTCAATGTATGTAAACAAGACTTGAAACAGAATGAAAATATATTTAAAATTCCCAAAATGATTCTTCTAGCAACCAATATTAACAGCACTGAATTTGATAGGGCTAGTATGGTGGCTGCTTGCCTTCGGCAAGTTCTTGGAATGGGGAAGATAGGGAAAGAAAATAGCTCCTCTTTTCTACAAAGCCTTCTCCATAGCAAGAAAATATTGGTGGTCTATGACAATTGCATAAACCAGAAGGTAGCTGCAGCTGCAGATGCATTAAAAAAGTTTGGAGCTGATGTGAAGTGTGTTGAAAGCGGCAAAGCTGCACTTGAAATGCTTCAATTGCCTCATAAATTTGATGCTTGCTTCATGGACATTCAAATGTTAGAAATGGAT

Protein sequence

>Msa0846920

MKFQKCSCPLLSWLRTHGGFNVCKQDLKQNENIFKIPKMILLATNINSTEFDRASMVAACLRQVLGMGKIGKENSSSFLQSLLHSKKILVVYDNCINQKVAAAADALKKFGADVKCVESGKAALEMLQLPHKFDACFMDIQMLEMD