Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847270 | XP_003603053.1 | 88.278 | 273 | 6 | 4 | 1 | 249 | 1 | 271 | 6.24e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847270 | sp|Q9FHA7|HEC1_ARATH | 85.366 | 82 | 12 | 0 | 135 | 216 | 107 | 188 | 4.95e-36 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847270 | G7J6E7 | 88.278 | 273 | 6 | 4 | 1 | 249 | 1 | 271 | 2.98e-165 | 467 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0847270 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847270 | MtrunA17_Chr3g0134001 | 88.278 | 273 | 6 | 4 | 1 | 249 | 1 | 271 | 5.74e-169 | 467 |
| Msa0847270 | MtrunA17_Chr8g0384141 | 81.013 | 79 | 15 | 0 | 135 | 213 | 99 | 177 | 6.27e-41 | 141 |
| Msa0847270 | MtrunA17_Chr8g0375121 | 53.723 | 188 | 67 | 8 | 43 | 220 | 23 | 200 | 2.99e-37 | 131 |
| Msa0847270 | MtrunA17_Chr5g0402161 | 76.344 | 93 | 20 | 1 | 135 | 227 | 122 | 212 | 1.89e-35 | 126 |
| Msa0847270 | MtrunA17_Chr8g0341421 | 66.667 | 75 | 25 | 0 | 147 | 221 | 325 | 399 | 3.11e-22 | 94.7 |
| Msa0847270 | MtrunA17_Chr2g0330641 | 71.429 | 70 | 20 | 0 | 144 | 213 | 284 | 353 | 6.01e-22 | 93.6 |
| Msa0847270 | MtrunA17_Chr7g0243041 | 68.519 | 54 | 17 | 0 | 156 | 209 | 32 | 85 | 8.06e-22 | 88.6 |
| Msa0847270 | MtrunA17_Chr5g0435021 | 62.500 | 56 | 21 | 0 | 157 | 212 | 225 | 280 | 8.34e-19 | 84.0 |
| Msa0847270 | MtrunA17_Chr1g0152651 | 62.963 | 54 | 20 | 0 | 159 | 212 | 283 | 336 | 5.32e-18 | 82.0 |
| Msa0847270 | MtrunA17_Chr1g0207311 | 46.914 | 81 | 43 | 0 | 159 | 239 | 205 | 285 | 1.55e-17 | 80.1 |
| Msa0847270 | MtrunA17_Chr1g0207301 | 50.746 | 67 | 33 | 0 | 146 | 212 | 284 | 350 | 1.79e-17 | 80.9 |
| Msa0847270 | MtrunA17_Chr5g0393721 | 61.111 | 54 | 21 | 0 | 159 | 212 | 233 | 286 | 2.74e-17 | 79.7 |
| Msa0847270 | MtrunA17_Chr3g0134741 | 53.968 | 63 | 29 | 0 | 150 | 212 | 229 | 291 | 2.46e-16 | 77.0 |
| Msa0847270 | MtrunA17_Chr4g0074161 | 54.545 | 66 | 29 | 1 | 157 | 221 | 213 | 278 | 3.35e-15 | 74.3 |
| Msa0847270 | MtrunA17_Chr1g0190731 | 46.250 | 80 | 42 | 1 | 143 | 221 | 186 | 265 | 4.34e-15 | 73.6 |
| Msa0847270 | MtrunA17_Chr2g0311101 | 48.684 | 76 | 32 | 1 | 145 | 213 | 157 | 232 | 9.59e-14 | 69.7 |
| Msa0847270 | MtrunA17_Chr1g0179061 | 57.407 | 54 | 23 | 0 | 160 | 213 | 180 | 233 | 1.02e-13 | 68.9 |
| Msa0847270 | MtrunA17_Chr4g0014771 | 56.140 | 57 | 24 | 1 | 160 | 215 | 128 | 184 | 4.58e-12 | 63.2 |
| Msa0847270 | MtrunA17_Chr2g0323091 | 51.852 | 54 | 26 | 0 | 160 | 213 | 146 | 199 | 9.88e-12 | 63.5 |
| Msa0847270 | MtrunA17_Chr1g0174271 | 41.463 | 82 | 47 | 1 | 135 | 215 | 283 | 364 | 1.28e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847270 | AT5G67060.2 | 85.366 | 82 | 12 | 0 | 135 | 216 | 95 | 176 | 4.66e-37 | 130 |
| Msa0847270 | AT5G67060.1 | 85.366 | 82 | 12 | 0 | 135 | 216 | 107 | 188 | 5.03e-37 | 130 |
| Msa0847270 | AT4G00120.1 | 70.886 | 79 | 23 | 0 | 135 | 213 | 97 | 175 | 4.07e-33 | 119 |
| Msa0847270 | AT3G50330.1 | 44.737 | 228 | 87 | 8 | 13 | 231 | 4 | 201 | 1.13e-32 | 119 |
| Msa0847270 | AT3G21330.1 | 67.089 | 79 | 26 | 0 | 135 | 213 | 254 | 332 | 5.74e-31 | 118 |
| Msa0847270 | AT5G09750.1 | 79.487 | 78 | 16 | 0 | 135 | 212 | 104 | 181 | 2.14e-28 | 108 |
| Msa0847270 | AT5G01305.1 | 67.797 | 59 | 19 | 0 | 151 | 209 | 38 | 96 | 2.23e-21 | 88.2 |
| Msa0847270 | AT5G43175.1 | 50.725 | 69 | 34 | 0 | 144 | 212 | 126 | 194 | 9.14e-19 | 82.4 |
| Msa0847270 | AT4G33880.1 | 64.815 | 54 | 19 | 0 | 159 | 212 | 275 | 328 | 1.33e-18 | 84.0 |
| Msa0847270 | AT5G37800.1 | 53.333 | 75 | 28 | 1 | 145 | 212 | 189 | 263 | 2.15e-18 | 82.8 |
| Msa0847270 | AT1G27740.1 | 52.941 | 68 | 32 | 0 | 145 | 212 | 162 | 229 | 2.87e-18 | 81.6 |
| Msa0847270 | AT1G66470.1 | 63.636 | 55 | 20 | 0 | 158 | 212 | 203 | 257 | 4.27e-18 | 82.0 |
| Msa0847270 | AT2G14760.1 | 62.963 | 54 | 20 | 0 | 159 | 212 | 246 | 299 | 1.37e-17 | 80.9 |
| Msa0847270 | AT4G30980.1 | 53.947 | 76 | 34 | 1 | 147 | 221 | 127 | 202 | 1.48e-16 | 77.8 |
| Msa0847270 | AT2G24260.2 | 53.086 | 81 | 30 | 3 | 148 | 221 | 28 | 107 | 2.72e-16 | 76.3 |
| Msa0847270 | AT4G30980.2 | 53.247 | 77 | 35 | 1 | 146 | 221 | 174 | 250 | 3.31e-16 | 77.4 |
| Msa0847270 | AT2G24260.1 | 53.086 | 81 | 30 | 3 | 148 | 221 | 131 | 210 | 5.63e-16 | 76.6 |
| Msa0847270 | AT5G58010.1 | 51.316 | 76 | 36 | 1 | 147 | 221 | 96 | 171 | 3.96e-15 | 73.6 |
| Msa0847270 | AT2G14760.3 | 50.746 | 67 | 20 | 1 | 159 | 212 | 246 | 312 | 2.96e-14 | 71.6 |
Find 47 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGTTGCTGGTTCAGGATT+AGG | 0.247420 | 5_4:-29051051 | Msa0847270:CDS |
| CCGTTAGATGAAGAAATTTC+AGG | 0.276028 | 5_4:+29051808 | None:intergenic |
| GATTCTGGGTCTATGTAAAT+TGG | 0.284997 | 5_4:+29051309 | None:intergenic |
| GATCGTAATGTTGATCGTTA+TGG | 0.304956 | 5_4:-29050997 | Msa0847270:CDS |
| TGTTGTTGTTGGAACATTAA+TGG | 0.311513 | 5_4:+29051571 | None:intergenic |
| AACAGGACAGTTGCTGGTTC+AGG | 0.321831 | 5_4:-29051057 | Msa0847270:CDS |
| CAGTTGCTGGTTCAGGATTA+GGG | 0.322129 | 5_4:-29051050 | Msa0847270:CDS |
| AGAGATTGTGTTTGTGTTTG+TGG | 0.340639 | 5_4:+29051618 | None:intergenic |
| TCACTGCAGGAACGTGCTTC+AGG | 0.355705 | 5_4:-29051090 | Msa0847270:CDS |
| TAAGGCTTAGGCAATGAAAC+AGG | 0.373028 | 5_4:+29051024 | None:intergenic |
| CTTCAGGAGCCAACAGTAAC+AGG | 0.378388 | 5_4:-29051074 | Msa0847270:CDS |
| GAAGACCATGGTATTGGATT+AGG | 0.391268 | 5_4:+29051676 | None:intergenic |
| CTCGAATTAGAAAACATTAA+CGG | 0.391592 | 5_4:+29051541 | None:intergenic |
| TGGTGTAGTAGAGTTGTTAT+TGG | 0.394604 | 5_4:+29051591 | None:intergenic |
| ATCGTAATGTTGATCGTTAT+GGG | 0.398296 | 5_4:-29050996 | Msa0847270:CDS |
| ATGATGAAGATGACTTTAAC+TGG | 0.403724 | 5_4:+29051878 | None:intergenic |
| ACGGTGTTGTTTGTTGTTGT+TGG | 0.421243 | 5_4:+29051560 | None:intergenic |
| AACGATCAACATTACGATCT+TGG | 0.428866 | 5_4:+29051001 | None:intergenic |
| AACAGTAACAGGACAGTTGC+TGG | 0.445444 | 5_4:-29051063 | Msa0847270:CDS |
| GACCATGGTATTGGATTAGG+AGG | 0.459342 | 5_4:+29051679 | None:intergenic |
| GAAGATGAAGACCATGGTAT+TGG | 0.485579 | 5_4:+29051670 | None:intergenic |
| GCTCAGAATACGAACCATTA+CGG | 0.497476 | 5_4:-29051508 | Msa0847270:intron |
| GTGTTTGTGGTGGATTGTGA+AGG | 0.504020 | 5_4:+29051631 | None:intergenic |
| AATAAGAATACTGCAAAGAA+TGG | 0.517132 | 5_4:-29051196 | Msa0847270:CDS |
| GGTACCAGGTGGAACTAAGA+TGG | 0.521420 | 5_4:-29051175 | Msa0847270:CDS |
| TGACGGTGGAAATTGATTGA+TGG | 0.535291 | 5_4:+29051771 | None:intergenic |
| CCTGAAATTTCTTCATCTAA+CGG | 0.536753 | 5_4:-29051808 | Msa0847270:CDS |
| GATTGTGTTTGTGTTTGTGG+TGG | 0.537734 | 5_4:+29051621 | None:intergenic |
| TTACGATCTTGGTAAGGCTT+AGG | 0.545623 | 5_4:+29051012 | None:intergenic |
| ATGACAACGCAGTACCGTAA+TGG | 0.563084 | 5_4:+29051494 | None:intergenic |
| GATGGATACTGCATCAATGT+TGG | 0.564818 | 5_4:-29051157 | Msa0847270:CDS |
| TGGAAATTGATTGATGGTGT+TGG | 0.574025 | 5_4:+29051777 | None:intergenic |
| TCAACATTACGATCTTGGTA+AGG | 0.575828 | 5_4:+29051006 | None:intergenic |
| GACACAACTTAAGTCACTGC+AGG | 0.578655 | 5_4:-29051103 | Msa0847270:CDS |
| AGCAACTGTCCTGTTACTGT+TGG | 0.580375 | 5_4:+29051065 | None:intergenic |
| GTCATCTTCATCATCATCAG+AGG | 0.630073 | 5_4:-29051869 | Msa0847270:CDS |
| TTATCTATTAAATCTGCAAG+AGG | 0.636966 | 5_4:+29051703 | None:intergenic |
| GTATCCATCTTAGTTCCACC+TGG | 0.642640 | 5_4:+29051171 | None:intergenic |
| AAGGCTTAGGCAATGAAACA+GGG | 0.655130 | 5_4:+29051025 | None:intergenic |
| TCATAGAATTGTTGATCTGA+CGG | 0.657239 | 5_4:+29051754 | None:intergenic |
| ACCATGGTATTGGATTAGGA+GGG | 0.660517 | 5_4:+29051680 | None:intergenic |
| ATACTGCAAAGAATGGTACC+AGG | 0.680757 | 5_4:-29051189 | Msa0847270:CDS |
| ACCCTCCTAATCCAATACCA+TGG | 0.687624 | 5_4:-29051681 | Msa0847270:CDS |
| TGTCTAGCTGCAATACTCTG+AGG | 0.695596 | 5_4:+29051243 | None:intergenic |
| TAGAATTGTTGATCTGACGG+TGG | 0.700773 | 5_4:+29051757 | None:intergenic |
| CTGCAAAGAATGGTACCAGG+TGG | 0.704915 | 5_4:-29051186 | Msa0847270:CDS |
| AATGATGAAGATGAAGACCA+TGG | 0.757666 | 5_4:+29051664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTATCTATTAAATCTGCAAG+AGG | + | chr5_4:29051182-29051201 | None:intergenic | 25.0% |
| ! | CTCGAATTAGAAAACATTAA+CGG | + | chr5_4:29051344-29051363 | None:intergenic | 25.0% |
| !! | ATCTTCACATTTCTTCTTTT+TGG | + | chr5_4:29051609-29051628 | None:intergenic | 25.0% |
| ! | AATAAGAATACTGCAAAGAA+TGG | - | chr5_4:29051686-29051705 | Msa0847270:CDS | 25.0% |
| ! | TTATCTATTAAATCTGCAAG+AGG | + | chr5_4:29051182-29051201 | None:intergenic | 25.0% |
| ! | CTCGAATTAGAAAACATTAA+CGG | + | chr5_4:29051344-29051363 | None:intergenic | 25.0% |
| !! | ATCTTCACATTTCTTCTTTT+TGG | + | chr5_4:29051609-29051628 | None:intergenic | 25.0% |
| ! | AATAAGAATACTGCAAAGAA+TGG | - | chr5_4:29051686-29051705 | Msa0847270:CDS | 25.0% |
| ATGATGAAGATGACTTTAAC+TGG | + | chr5_4:29051007-29051026 | None:intergenic | 30.0% | |
| CCTGAAATTTCTTCATCTAA+CGG | - | chr5_4:29051074-29051093 | Msa0847270:CDS | 30.0% | |
| TCATAGAATTGTTGATCTGA+CGG | + | chr5_4:29051131-29051150 | None:intergenic | 30.0% | |
| ! | TGTTGTTGTTGGAACATTAA+TGG | + | chr5_4:29051314-29051333 | None:intergenic | 30.0% |
| ! | TTCACATTTCTTCTTTTTGG+TGG | + | chr5_4:29051606-29051625 | None:intergenic | 30.0% |
| ATCGTAATGTTGATCGTTAT+GGG | - | chr5_4:29051886-29051905 | Msa0847270:CDS | 30.0% | |
| ATGATGAAGATGACTTTAAC+TGG | + | chr5_4:29051007-29051026 | None:intergenic | 30.0% | |
| CCTGAAATTTCTTCATCTAA+CGG | - | chr5_4:29051074-29051093 | Msa0847270:CDS | 30.0% | |
| TCATAGAATTGTTGATCTGA+CGG | + | chr5_4:29051131-29051150 | None:intergenic | 30.0% | |
| ! | TGTTGTTGTTGGAACATTAA+TGG | + | chr5_4:29051314-29051333 | None:intergenic | 30.0% |
| ! | TTCACATTTCTTCTTTTTGG+TGG | + | chr5_4:29051606-29051625 | None:intergenic | 30.0% |
| ATCGTAATGTTGATCGTTAT+GGG | - | chr5_4:29051886-29051905 | Msa0847270:CDS | 30.0% | |
| CCGTTAGATGAAGAAATTTC+AGG | + | chr5_4:29051077-29051096 | None:intergenic | 35.0% | |
| !! | TGGAAATTGATTGATGGTGT+TGG | + | chr5_4:29051108-29051127 | None:intergenic | 35.0% |
| AATGATGAAGATGAAGACCA+TGG | + | chr5_4:29051221-29051240 | None:intergenic | 35.0% | |
| AGAGATTGTGTTTGTGTTTG+TGG | + | chr5_4:29051267-29051286 | None:intergenic | 35.0% | |
| TGGTGTAGTAGAGTTGTTAT+TGG | + | chr5_4:29051294-29051313 | None:intergenic | 35.0% | |
| GATTCTGGGTCTATGTAAAT+TGG | + | chr5_4:29051576-29051595 | None:intergenic | 35.0% | |
| !!! | TTGGTGGTTTTACTGATTCT+GGG | + | chr5_4:29051590-29051609 | None:intergenic | 35.0% |
| !!! | TTTGGTGGTTTTACTGATTC+TGG | + | chr5_4:29051591-29051610 | None:intergenic | 35.0% |
| TCAACATTACGATCTTGGTA+AGG | + | chr5_4:29051879-29051898 | None:intergenic | 35.0% | |
| AACGATCAACATTACGATCT+TGG | + | chr5_4:29051884-29051903 | None:intergenic | 35.0% | |
| GATCGTAATGTTGATCGTTA+TGG | - | chr5_4:29051885-29051904 | Msa0847270:CDS | 35.0% | |
| CCGTTAGATGAAGAAATTTC+AGG | + | chr5_4:29051077-29051096 | None:intergenic | 35.0% | |
| !! | TGGAAATTGATTGATGGTGT+TGG | + | chr5_4:29051108-29051127 | None:intergenic | 35.0% |
| AATGATGAAGATGAAGACCA+TGG | + | chr5_4:29051221-29051240 | None:intergenic | 35.0% | |
| AGAGATTGTGTTTGTGTTTG+TGG | + | chr5_4:29051267-29051286 | None:intergenic | 35.0% | |
| TGGTGTAGTAGAGTTGTTAT+TGG | + | chr5_4:29051294-29051313 | None:intergenic | 35.0% | |
| GATTCTGGGTCTATGTAAAT+TGG | + | chr5_4:29051576-29051595 | None:intergenic | 35.0% | |
| !!! | TTGGTGGTTTTACTGATTCT+GGG | + | chr5_4:29051590-29051609 | None:intergenic | 35.0% |
| !!! | TTTGGTGGTTTTACTGATTC+TGG | + | chr5_4:29051591-29051610 | None:intergenic | 35.0% |
| TCAACATTACGATCTTGGTA+AGG | + | chr5_4:29051879-29051898 | None:intergenic | 35.0% | |
| AACGATCAACATTACGATCT+TGG | + | chr5_4:29051884-29051903 | None:intergenic | 35.0% | |
| GATCGTAATGTTGATCGTTA+TGG | - | chr5_4:29051885-29051904 | Msa0847270:CDS | 35.0% | |
| GTCATCTTCATCATCATCAG+AGG | - | chr5_4:29051013-29051032 | Msa0847270:CDS | 40.0% | |
| TGACGGTGGAAATTGATTGA+TGG | + | chr5_4:29051114-29051133 | None:intergenic | 40.0% | |
| TAGAATTGTTGATCTGACGG+TGG | + | chr5_4:29051128-29051147 | None:intergenic | 40.0% | |
| ! | ACCATGGTATTGGATTAGGA+GGG | + | chr5_4:29051205-29051224 | None:intergenic | 40.0% |
| ! | GAAGACCATGGTATTGGATT+AGG | + | chr5_4:29051209-29051228 | None:intergenic | 40.0% |
| GAAGATGAAGACCATGGTAT+TGG | + | chr5_4:29051215-29051234 | None:intergenic | 40.0% | |
| GATTGTGTTTGTGTTTGTGG+TGG | + | chr5_4:29051264-29051283 | None:intergenic | 40.0% | |
| !! | ACGGTGTTGTTTGTTGTTGT+TGG | + | chr5_4:29051325-29051344 | None:intergenic | 40.0% |
| GCTCAGAATACGAACCATTA+CGG | - | chr5_4:29051374-29051393 | Msa0847270:intron | 40.0% | |
| ATCTGAGAAGAGAAACTCGA+TGG | - | chr5_4:29051409-29051428 | Msa0847270:intron | 40.0% | |
| ATACTGCAAAGAATGGTACC+AGG | - | chr5_4:29051693-29051712 | Msa0847270:CDS | 40.0% | |
| GATGGATACTGCATCAATGT+TGG | - | chr5_4:29051725-29051744 | Msa0847270:CDS | 40.0% | |
| AAGGCTTAGGCAATGAAACA+GGG | + | chr5_4:29051860-29051879 | None:intergenic | 40.0% | |
| TAAGGCTTAGGCAATGAAAC+AGG | + | chr5_4:29051861-29051880 | None:intergenic | 40.0% | |
| TTACGATCTTGGTAAGGCTT+AGG | + | chr5_4:29051873-29051892 | None:intergenic | 40.0% | |
| GTCATCTTCATCATCATCAG+AGG | - | chr5_4:29051013-29051032 | Msa0847270:CDS | 40.0% | |
| TGACGGTGGAAATTGATTGA+TGG | + | chr5_4:29051114-29051133 | None:intergenic | 40.0% | |
| TAGAATTGTTGATCTGACGG+TGG | + | chr5_4:29051128-29051147 | None:intergenic | 40.0% | |
| ! | ACCATGGTATTGGATTAGGA+GGG | + | chr5_4:29051205-29051224 | None:intergenic | 40.0% |
| ! | GAAGACCATGGTATTGGATT+AGG | + | chr5_4:29051209-29051228 | None:intergenic | 40.0% |
| GAAGATGAAGACCATGGTAT+TGG | + | chr5_4:29051215-29051234 | None:intergenic | 40.0% | |
| GATTGTGTTTGTGTTTGTGG+TGG | + | chr5_4:29051264-29051283 | None:intergenic | 40.0% | |
| !! | ACGGTGTTGTTTGTTGTTGT+TGG | + | chr5_4:29051325-29051344 | None:intergenic | 40.0% |
| GCTCAGAATACGAACCATTA+CGG | - | chr5_4:29051374-29051393 | Msa0847270:intron | 40.0% | |
| ATCTGAGAAGAGAAACTCGA+TGG | - | chr5_4:29051409-29051428 | Msa0847270:intron | 40.0% | |
| ATACTGCAAAGAATGGTACC+AGG | - | chr5_4:29051693-29051712 | Msa0847270:CDS | 40.0% | |
| GATGGATACTGCATCAATGT+TGG | - | chr5_4:29051725-29051744 | Msa0847270:CDS | 40.0% | |
| AAGGCTTAGGCAATGAAACA+GGG | + | chr5_4:29051860-29051879 | None:intergenic | 40.0% | |
| TAAGGCTTAGGCAATGAAAC+AGG | + | chr5_4:29051861-29051880 | None:intergenic | 40.0% | |
| TTACGATCTTGGTAAGGCTT+AGG | + | chr5_4:29051873-29051892 | None:intergenic | 40.0% | |
| ACCCTCCTAATCCAATACCA+TGG | - | chr5_4:29051201-29051220 | Msa0847270:CDS | 45.0% | |
| ! | GACCATGGTATTGGATTAGG+AGG | + | chr5_4:29051206-29051225 | None:intergenic | 45.0% |
| !! | GTGTTTGTGGTGGATTGTGA+AGG | + | chr5_4:29051254-29051273 | None:intergenic | 45.0% |
| ATGACAACGCAGTACCGTAA+TGG | + | chr5_4:29051391-29051410 | None:intergenic | 45.0% | |
| TGAGAAGAGAAACTCGATGG+CGG | - | chr5_4:29051412-29051431 | Msa0847270:intron | 45.0% | |
| TGTCTAGCTGCAATACTCTG+AGG | + | chr5_4:29051642-29051661 | None:intergenic | 45.0% | |
| GTATCCATCTTAGTTCCACC+TGG | + | chr5_4:29051714-29051733 | None:intergenic | 45.0% | |
| GACACAACTTAAGTCACTGC+AGG | - | chr5_4:29051779-29051798 | Msa0847270:CDS | 45.0% | |
| AGCAACTGTCCTGTTACTGT+TGG | + | chr5_4:29051820-29051839 | None:intergenic | 45.0% | |
| AACAGTAACAGGACAGTTGC+TGG | - | chr5_4:29051819-29051838 | Msa0847270:CDS | 45.0% | |
| !! | ACAGTTGCTGGTTCAGGATT+AGG | - | chr5_4:29051831-29051850 | Msa0847270:CDS | 45.0% |
| !! | CAGTTGCTGGTTCAGGATTA+GGG | - | chr5_4:29051832-29051851 | Msa0847270:CDS | 45.0% |
| ACCCTCCTAATCCAATACCA+TGG | - | chr5_4:29051201-29051220 | Msa0847270:CDS | 45.0% | |
| ! | GACCATGGTATTGGATTAGG+AGG | + | chr5_4:29051206-29051225 | None:intergenic | 45.0% |
| !! | GTGTTTGTGGTGGATTGTGA+AGG | + | chr5_4:29051254-29051273 | None:intergenic | 45.0% |
| ATGACAACGCAGTACCGTAA+TGG | + | chr5_4:29051391-29051410 | None:intergenic | 45.0% | |
| TGAGAAGAGAAACTCGATGG+CGG | - | chr5_4:29051412-29051431 | Msa0847270:intron | 45.0% | |
| TGTCTAGCTGCAATACTCTG+AGG | + | chr5_4:29051642-29051661 | None:intergenic | 45.0% | |
| GTATCCATCTTAGTTCCACC+TGG | + | chr5_4:29051714-29051733 | None:intergenic | 45.0% | |
| GACACAACTTAAGTCACTGC+AGG | - | chr5_4:29051779-29051798 | Msa0847270:CDS | 45.0% | |
| AGCAACTGTCCTGTTACTGT+TGG | + | chr5_4:29051820-29051839 | None:intergenic | 45.0% | |
| AACAGTAACAGGACAGTTGC+TGG | - | chr5_4:29051819-29051838 | Msa0847270:CDS | 45.0% | |
| !! | ACAGTTGCTGGTTCAGGATT+AGG | - | chr5_4:29051831-29051850 | Msa0847270:CDS | 45.0% |
| !! | CAGTTGCTGGTTCAGGATTA+GGG | - | chr5_4:29051832-29051851 | Msa0847270:CDS | 45.0% |
| ! | AAACTCGATGGCGGTGATGA+GGG | - | chr5_4:29051421-29051440 | Msa0847270:intron | 50.0% |
| CTGCAAAGAATGGTACCAGG+TGG | - | chr5_4:29051696-29051715 | Msa0847270:CDS | 50.0% | |
| GGTACCAGGTGGAACTAAGA+TGG | - | chr5_4:29051707-29051726 | Msa0847270:CDS | 50.0% | |
| CTTCAGGAGCCAACAGTAAC+AGG | - | chr5_4:29051808-29051827 | Msa0847270:CDS | 50.0% | |
| !! | AACAGGACAGTTGCTGGTTC+AGG | - | chr5_4:29051825-29051844 | Msa0847270:CDS | 50.0% |
| ! | AAACTCGATGGCGGTGATGA+GGG | - | chr5_4:29051421-29051440 | Msa0847270:intron | 50.0% |
| CTGCAAAGAATGGTACCAGG+TGG | - | chr5_4:29051696-29051715 | Msa0847270:CDS | 50.0% | |
| GGTACCAGGTGGAACTAAGA+TGG | - | chr5_4:29051707-29051726 | Msa0847270:CDS | 50.0% | |
| CTTCAGGAGCCAACAGTAAC+AGG | - | chr5_4:29051808-29051827 | Msa0847270:CDS | 50.0% | |
| !! | AACAGGACAGTTGCTGGTTC+AGG | - | chr5_4:29051825-29051844 | Msa0847270:CDS | 50.0% |
| ! | GAAACTCGATGGCGGTGATG+AGG | - | chr5_4:29051420-29051439 | Msa0847270:intron | 55.0% |
| TCACTGCAGGAACGTGCTTC+AGG | - | chr5_4:29051792-29051811 | Msa0847270:CDS | 55.0% | |
| ! | GAAACTCGATGGCGGTGATG+AGG | - | chr5_4:29051420-29051439 | Msa0847270:intron | 55.0% |
| TCACTGCAGGAACGTGCTTC+AGG | - | chr5_4:29051792-29051811 | Msa0847270:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 29050993 | 29051911 | 29050993 | ID=Msa0847270;Name=Msa0847270 |
| chr5_4 | mRNA | 29050993 | 29051911 | 29050993 | ID=Msa0847270-mRNA-1;Parent=Msa0847270;Name=Msa0847270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|249 |
| chr5_4 | exon | 29051509 | 29051911 | 29051509 | ID=Msa0847270-mRNA-1:exon:10834;Parent=Msa0847270-mRNA-1 |
| chr5_4 | exon | 29050993 | 29051339 | 29050993 | ID=Msa0847270-mRNA-1:exon:10833;Parent=Msa0847270-mRNA-1 |
| chr5_4 | CDS | 29051509 | 29051911 | 29051509 | ID=Msa0847270-mRNA-1:cds;Parent=Msa0847270-mRNA-1 |
| chr5_4 | CDS | 29050993 | 29051339 | 29050993 | ID=Msa0847270-mRNA-1:cds;Parent=Msa0847270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
