AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0847380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847380 MtrunA17_Chr5g0404781 84.545 330 28 8 1 314 1 323 0.0 503
Msa0847380 MtrunA17_Chr8g0372461 52.023 346 119 12 1 314 1 331 1.66e-90 273
Msa0847380 MtrunA17_Chr3g0142171 42.500 320 141 12 1 309 1 288 4.63e-61 196
Msa0847380 MtrunA17_Chr1g0155791 51.739 230 86 6 99 314 120 338 1.80e-59 193
Msa0847380 MtrunA17_Chr4g0035591 46.154 143 57 1 101 243 20 142 5.76e-39 136
Msa0847380 MtrunA17_Chr5g0441921 47.712 153 68 2 101 241 124 276 1.21e-38 139
Msa0847380 MtrunA17_Chr3g0082511 43.750 160 74 3 101 246 134 291 3.11e-38 138
Msa0847380 MtrunA17_Chr8g0353111 36.522 230 106 8 43 249 78 290 6.57e-35 129
Msa0847380 MtrunA17_Chr2g0281741 62.162 37 14 0 99 135 148 184 1.87e-12 65.1
Msa0847380 MtrunA17_Chr0c01g0489181 59.459 37 15 0 99 135 65 101 6.46e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847380 AT5G66350.1 44.780 364 118 17 1 314 1 331 2.64e-72 226
Msa0847380 AT3G51060.1 46.319 326 112 11 35 314 62 370 1.23e-71 226
Msa0847380 AT5G66350.3 44.729 351 113 16 1 301 1 320 9.67e-70 220
Msa0847380 AT5G66350.2 44.729 351 113 16 1 301 1 320 1.86e-69 219
Msa0847380 AT1G75520.1 39.788 377 133 13 1 314 1 346 2.55e-64 206
Msa0847380 AT1G19790.2 38.482 369 146 14 1 313 1 344 6.17e-63 203
Msa0847380 AT1G19790.1 38.482 369 146 14 1 313 1 344 6.17e-63 203
Msa0847380 AT4G36260.1 39.053 338 161 14 1 312 1 319 4.78e-50 169
Msa0847380 AT2G18120.1 41.600 250 90 9 1 243 6 206 5.19e-46 155
Msa0847380 AT2G21400.2 52.778 144 51 3 101 241 10 139 2.71e-44 150
Msa0847380 AT2G21400.4 52.778 144 51 3 101 241 9 138 2.92e-44 150
Msa0847380 AT2G18120.2 40.964 249 91 9 1 243 6 204 6.41e-44 150
Msa0847380 AT2G21400.3 51.773 141 42 3 101 241 10 124 1.25e-42 145
Msa0847380 AT2G21400.1 51.773 141 42 3 101 241 9 123 1.44e-42 145
Msa0847380 AT5G12330.1 44.304 158 71 2 101 241 112 269 4.57e-36 132
Msa0847380 AT5G12330.2 44.304 158 71 2 101 241 112 269 4.57e-36 132
Msa0847380 AT5G12330.4 44.304 158 71 2 101 241 199 356 9.74e-36 133
Msa0847380 AT5G33210.2 61.364 88 24 2 99 177 15 101 4.23e-29 107
Msa0847380 AT5G33210.1 61.364 88 24 2 99 177 50 136 1.06e-28 108
Msa0847380 AT3G54430.1 40.645 155 67 6 97 244 37 173 1.70e-28 108
Msa0847380 AT5G12330.3 86.957 46 6 0 101 146 112 157 5.76e-23 95.1

Find 81 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAATTCACTTTGAAATA+TGG 0.160002 5_4:+29313796 None:intergenic
GACAGAAGAGATAAGGTTTA+AGG 0.199519 5_4:+29312208 None:intergenic
ATCATTCGCCTAAACAAATT+AGG 0.250682 5_4:-29312068 Msa0847380:three_prime_UTR
CCCTGATGCTACTGCTGTTT+GGG 0.261168 5_4:-29312186 Msa0847380:CDS
TACTCCTCTGGTGTTGTGTT+AGG 0.305453 5_4:-29313455 Msa0847380:CDS
TGTTGTTGTTGAGATGATTT+AGG 0.309644 5_4:+29313206 None:intergenic
TCCCTGATGCTACTGCTGTT+TGG 0.338077 5_4:-29312187 Msa0847380:CDS
ATAATCCAACAACAGAATTC+TGG 0.358326 5_4:-29313607 Msa0847380:CDS
CACTTATATTAATAACTACT+AGG 0.365900 5_4:+29313877 None:intergenic
GAATTGAAGGTTTGGTTAGT+TGG 0.366672 5_4:+29313905 None:intergenic
ACTAGAATTAGAGGCGTTTC+CGG 0.373528 5_4:+29312259 None:intergenic
AATAGATCTACTGTGTTTGT+AGG 0.376062 5_4:-29313398 Msa0847380:CDS
TGGGAATAATAGTTACAATA+TGG 0.377378 5_4:-29312285 Msa0847380:CDS
AGAGTGAGTGAAGGGTTTGT+AGG 0.387801 5_4:+29313131 None:intergenic
CATATTTCAAAGTGAATTTG+TGG 0.392116 5_4:-29313795 Msa0847380:five_prime_UTR
TAACTATTATTCCCATGATC+TGG 0.405584 5_4:+29312293 None:intergenic
TGAATTCTCCAGCAGAGTTC+AGG 0.409422 5_4:-29312421 Msa0847380:CDS
CTACTAGGGTAAAGAATTGA+AGG 0.411713 5_4:+29313892 None:intergenic
TATGATTATGGTCCAGATCA+TGG 0.413474 5_4:-29312305 Msa0847380:CDS
CGAATGATGAATCAAGATCT+TGG 0.418725 5_4:+29312083 None:intergenic
CTTTCTCTTCTTCTAGCAGC+AGG 0.421698 5_4:+29313248 None:intergenic
AGGGTAAAGAATTGAAGGTT+TGG 0.424136 5_4:+29313897 None:intergenic
AAACTCATGTTAAGAGTACT+TGG 0.425175 5_4:-29313274 Msa0847380:CDS
ACAGAAGAGATAAGGTTTAA+GGG 0.430955 5_4:+29312209 None:intergenic
GGTTTGGAATAGTAGTAGTA+TGG 0.436546 5_4:-29313678 Msa0847380:exon
TCCCAAACAGCAGTAGCATC+AGG 0.439192 5_4:+29312185 None:intergenic
TTATACCAGAATTCTGTTGT+TGG 0.445028 5_4:+29313602 None:intergenic
TGTTAGGAGTGAGACCTACT+AGG 0.447826 5_4:-29313439 Msa0847380:CDS
GAGTGTACCACTAGAATTAG+AGG 0.455284 5_4:+29312250 None:intergenic
GCTGGAGAATTCACCACAGC+TGG 0.457156 5_4:+29312431 None:intergenic
GTTGATGTTGATGAAGATGT+TGG 0.457884 5_4:+29313525 None:intergenic
GATATAAGTTGTCAAGATTG+TGG 0.462555 5_4:-29313368 Msa0847380:CDS
CCACAAGATCTTTACTCCTC+TGG 0.463212 5_4:-29313467 Msa0847380:CDS
AAGAATTGCGTACCACTAGA+AGG 0.471301 5_4:+29312113 None:intergenic
TCTAGTGGTACACTCCTTGA+AGG 0.471939 5_4:-29312242 Msa0847380:CDS
TCTACTGTGTTTGTAGGAAG+TGG 0.474128 5_4:-29313392 Msa0847380:CDS
TTGTTGGATTATTATTCTGT+TGG 0.477389 5_4:+29313618 None:intergenic
CTCACGCACCTGAACTCTGC+TGG 0.492218 5_4:+29312413 None:intergenic
TCAGAAGAACAAACCCTAGT+AGG 0.499085 5_4:+29313425 None:intergenic
AGGGCTGAGCCACCCCTTCA+AGG 0.501243 5_4:+29312228 None:intergenic
GAATGATGAATCAAGATCTT+GGG 0.507602 5_4:+29312084 None:intergenic
CATCAGGGACAGAAGAGATA+AGG 0.508932 5_4:+29312201 None:intergenic
ATATAAGTTGTCAAGATTGT+GGG 0.512750 5_4:-29313367 Msa0847380:CDS
AAGGTTTGGTTAGTTGGTTG+AGG 0.513889 5_4:+29313911 None:intergenic
TCACTCACTCTCCCTTCAGC+AGG 0.521572 5_4:-29313119 Msa0847380:intron
AGATCTTGTGGCTGCTGCTG+AGG 0.524505 5_4:+29313479 None:intergenic
TAAACGAGTGCAAGCTAAAG+AGG 0.530926 5_4:+29313154 None:intergenic
CTAGTGGTACACTCCTTGAA+GGG 0.532650 5_4:-29312241 Msa0847380:CDS
AATAGTTACAATATGGCTAC+CGG 0.553111 5_4:-29312278 Msa0847380:CDS
GGAGCTGGATACAAAGAAGA+AGG 0.554978 5_4:+29312152 None:intergenic
GTTAGGAGTGAGACCTACTA+GGG 0.557590 5_4:-29313438 Msa0847380:CDS
GAAGGCATGAAGGTATTAAG+TGG 0.559260 5_4:+29312131 None:intergenic
TCAACAGCTGTAAACATTGG+AGG 0.560848 5_4:-29312350 Msa0847380:CDS
CAAGTTCTACATCTCATATG+AGG 0.561087 5_4:+29313323 None:intergenic
ATGATTATGGTCCAGATCAT+GGG 0.563960 5_4:-29312304 Msa0847380:CDS
GTTGTTTCTAATTCATACCG+TGG 0.564425 5_4:-29313563 Msa0847380:CDS
ATGAAGGTATTAAGTGGAGC+TGG 0.565074 5_4:+29312137 None:intergenic
ATGAATCAAGATCTTGGGTG+GGG 0.569684 5_4:+29312089 None:intergenic
ACTTATATTAATAACTACTA+GGG 0.573540 5_4:+29313878 None:intergenic
TGGTACACTCCTTGAAGGGG+TGG 0.576962 5_4:-29312237 Msa0847380:CDS
TGATGAATCAAGATCTTGGG+TGG 0.578391 5_4:+29312087 None:intergenic
ATATAGTATATACCTGCTGA+AGG 0.578577 5_4:+29313107 None:intergenic
AGAACTTGTTGCAAGAGTAG+AGG 0.587131 5_4:-29313308 Msa0847380:CDS
TATTCAACAGCTGTAAACAT+TGG 0.588034 5_4:-29312353 Msa0847380:CDS
CCAGAGGAGTAAAGATCTTG+TGG 0.588657 5_4:+29313467 None:intergenic
CTGAAGGGAGAGTGAGTGAA+GGG 0.593490 5_4:+29313123 None:intergenic
CAACAGCTGTAAACATTGGA+GGG 0.602052 5_4:-29312349 Msa0847380:CDS
AATACCTTCATGCCTTCTAG+TGG 0.605967 5_4:-29312125 Msa0847380:CDS
GATGAATCAAGATCTTGGGT+GGG 0.609126 5_4:+29312088 None:intergenic
CCCAAACAGCAGTAGCATCA+GGG 0.610175 5_4:+29312186 None:intergenic
CGTACCACTAGAAGGCATGA+AGG 0.621664 5_4:+29312121 None:intergenic
AACTCATGTTAAGAGTACTT+GGG 0.622414 5_4:-29313273 Msa0847380:CDS
TGAATCAAGATCTTGGGTGG+GGG 0.629021 5_4:+29312090 None:intergenic
AAATCATCTCAACAACAACA+TGG 0.641154 5_4:-29313203 Msa0847380:CDS
TAGTGGTACACTCCTTGAAG+GGG 0.649565 5_4:-29312240 Msa0847380:CDS
GCTGAAGGGAGAGTGAGTGA+AGG 0.652710 5_4:+29313122 None:intergenic
TATAGTATATACCTGCTGAA+GGG 0.659960 5_4:+29313108 None:intergenic
CACTCCTAACACAACACCAG+AGG 0.665208 5_4:+29313451 None:intergenic
GTATACATATATATAGATCG+AGG 0.691769 5_4:-29313730 Msa0847380:five_prime_UTR
GGAAACGCCTCTAATTCTAG+TGG 0.698556 5_4:-29312257 Msa0847380:CDS
GGTTCCAAATCTCAAAACCA+CGG 0.709690 5_4:+29313546 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATATTAATAACTACTA+GGG + chr5_4:29312142-29312161 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG - chr5_4:29313392-29313411 Msa0847380:CDS 15.0%
!! ACTTATATTAATAACTACTA+GGG + chr5_4:29312142-29312161 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG - chr5_4:29313392-29313411 Msa0847380:CDS 15.0%
!! CACTTATATTAATAACTACT+AGG + chr5_4:29312143-29312162 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG - chr5_4:29312236-29312255 Msa0847380:CDS 20.0%
!! AAACAAACAAACTATTAGTT+AGG + chr5_4:29313504-29313523 None:intergenic 20.0%
!!! GTTTTTTTCCTAATTTGTTT+AGG + chr5_4:29313960-29313979 None:intergenic 20.0%
!! CACTTATATTAATAACTACT+AGG + chr5_4:29312143-29312162 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG - chr5_4:29312236-29312255 Msa0847380:CDS 20.0%
!! AAACAAACAAACTATTAGTT+AGG + chr5_4:29313504-29313523 None:intergenic 20.0%
!!! GTTTTTTTCCTAATTTGTTT+AGG + chr5_4:29313960-29313979 None:intergenic 20.0%
!!! CACAAATTCACTTTGAAATA+TGG + chr5_4:29312224-29312243 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG - chr5_4:29312222-29312241 Msa0847380:CDS 25.0%
! GTATACATATATATAGATCG+AGG - chr5_4:29312287-29312306 Msa0847380:CDS 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG - chr5_4:29312358-29312377 Msa0847380:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG + chr5_4:29312402-29312421 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG - chr5_4:29312650-29312669 Msa0847380:intron 25.0%
! GACATATATGAACAAAGAAA+AGG + chr5_4:29313288-29313307 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG - chr5_4:29313335-29313354 Msa0847380:CDS 25.0%
!! TATAACACAGCTTTATAGAA+AGG + chr5_4:29313443-29313462 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG - chr5_4:29313552-29313571 Msa0847380:CDS 25.0%
!! AGAGGAATTTTGTATGATTA+TGG - chr5_4:29313700-29313719 Msa0847380:five_prime_UTR 25.0%
! TGGGAATAATAGTTACAATA+TGG - chr5_4:29313732-29313751 Msa0847380:five_prime_UTR 25.0%
!!! CACAAATTCACTTTGAAATA+TGG + chr5_4:29312224-29312243 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG - chr5_4:29312222-29312241 Msa0847380:CDS 25.0%
! GTATACATATATATAGATCG+AGG - chr5_4:29312287-29312306 Msa0847380:CDS 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG - chr5_4:29312358-29312377 Msa0847380:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG + chr5_4:29312402-29312421 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG - chr5_4:29312650-29312669 Msa0847380:intron 25.0%
! GACATATATGAACAAAGAAA+AGG + chr5_4:29313288-29313307 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG - chr5_4:29313335-29313354 Msa0847380:CDS 25.0%
!! TATAACACAGCTTTATAGAA+AGG + chr5_4:29313443-29313462 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG - chr5_4:29313552-29313571 Msa0847380:CDS 25.0%
!! AGAGGAATTTTGTATGATTA+TGG - chr5_4:29313700-29313719 Msa0847380:five_prime_UTR 25.0%
! TGGGAATAATAGTTACAATA+TGG - chr5_4:29313732-29313751 Msa0847380:five_prime_UTR 25.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG - chr5_4:29312304-29312323 Msa0847380:CDS 30.0%
! TTGATATGGATTTTCGTTCA+GGG - chr5_4:29312318-29312337 Msa0847380:CDS 30.0%
ATAATCCAACAACAGAATTC+TGG - chr5_4:29312410-29312429 Msa0847380:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG + chr5_4:29312418-29312437 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG - chr5_4:29312619-29312638 Msa0847380:intron 30.0%
GATATAAGTTGTCAAGATTG+TGG - chr5_4:29312649-29312668 Msa0847380:intron 30.0%
!! AAACTCATGTTAAGAGTACT+TGG - chr5_4:29312743-29312762 Msa0847380:intron 30.0%
!! AACTCATGTTAAGAGTACTT+GGG - chr5_4:29312744-29312763 Msa0847380:intron 30.0%
! TGTTGTTGTTGAGATGATTT+AGG + chr5_4:29312814-29312833 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG - chr5_4:29312814-29312833 Msa0847380:intron 30.0%
TATAGTATATACCTGCTGAA+GGG + chr5_4:29312912-29312931 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG + chr5_4:29312913-29312932 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG - chr5_4:29313045-29313064 Msa0847380:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG + chr5_4:29313073-29313092 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG + chr5_4:29313131-29313150 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG - chr5_4:29313345-29313364 Msa0847380:CDS 30.0%
TATTCAACAGCTGTAAACAT+TGG - chr5_4:29313664-29313683 Msa0847380:exon 30.0%
TAACTATTATTCCCATGATC+TGG + chr5_4:29313727-29313746 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG - chr5_4:29313739-29313758 Msa0847380:five_prime_UTR 30.0%
ACAGAAGAGATAAGGTTTAA+GGG + chr5_4:29313811-29313830 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG + chr5_4:29313936-29313955 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG - chr5_4:29313949-29313968 Msa0847380:five_prime_UTR 30.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG - chr5_4:29312304-29312323 Msa0847380:CDS 30.0%
! TTGATATGGATTTTCGTTCA+GGG - chr5_4:29312318-29312337 Msa0847380:CDS 30.0%
ATAATCCAACAACAGAATTC+TGG - chr5_4:29312410-29312429 Msa0847380:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG + chr5_4:29312418-29312437 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG - chr5_4:29312619-29312638 Msa0847380:intron 30.0%
GATATAAGTTGTCAAGATTG+TGG - chr5_4:29312649-29312668 Msa0847380:intron 30.0%
!! AAACTCATGTTAAGAGTACT+TGG - chr5_4:29312743-29312762 Msa0847380:intron 30.0%
!! AACTCATGTTAAGAGTACTT+GGG - chr5_4:29312744-29312763 Msa0847380:intron 30.0%
! TGTTGTTGTTGAGATGATTT+AGG + chr5_4:29312814-29312833 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG - chr5_4:29312814-29312833 Msa0847380:intron 30.0%
TATAGTATATACCTGCTGAA+GGG + chr5_4:29312912-29312931 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG + chr5_4:29312913-29312932 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG - chr5_4:29313045-29313064 Msa0847380:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG + chr5_4:29313073-29313092 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG + chr5_4:29313131-29313150 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG - chr5_4:29313345-29313364 Msa0847380:CDS 30.0%
TATTCAACAGCTGTAAACAT+TGG - chr5_4:29313664-29313683 Msa0847380:exon 30.0%
TAACTATTATTCCCATGATC+TGG + chr5_4:29313727-29313746 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG - chr5_4:29313739-29313758 Msa0847380:five_prime_UTR 30.0%
ACAGAAGAGATAAGGTTTAA+GGG + chr5_4:29313811-29313830 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG + chr5_4:29313936-29313955 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG - chr5_4:29313949-29313968 Msa0847380:five_prime_UTR 30.0%
! GAATTGAAGGTTTGGTTAGT+TGG + chr5_4:29312115-29312134 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG + chr5_4:29312123-29312142 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG + chr5_4:29312128-29312147 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG - chr5_4:29312317-29312336 Msa0847380:CDS 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG - chr5_4:29312339-29312358 Msa0847380:CDS 35.0%
!! GTTGTTTCTAATTCATACCG+TGG - chr5_4:29312454-29312473 Msa0847380:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG + chr5_4:29312495-29312514 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG + chr5_4:29312697-29312716 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG - chr5_4:29313148-29313167 Msa0847380:CDS 35.0%
AATGAATGGGATCAATGACA+GGG - chr5_4:29313161-29313180 Msa0847380:CDS 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG + chr5_4:29313254-29313273 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG - chr5_4:29313712-29313731 Msa0847380:five_prime_UTR 35.0%
ATGATTATGGTCCAGATCAT+GGG - chr5_4:29313713-29313732 Msa0847380:five_prime_UTR 35.0%
GACAGAAGAGATAAGGTTTA+AGG + chr5_4:29313812-29313831 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG + chr5_4:29313937-29313956 None:intergenic 35.0%
! GAATTGAAGGTTTGGTTAGT+TGG + chr5_4:29312115-29312134 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG + chr5_4:29312123-29312142 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG + chr5_4:29312128-29312147 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG - chr5_4:29312317-29312336 Msa0847380:CDS 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG - chr5_4:29312339-29312358 Msa0847380:CDS 35.0%
!! GTTGTTTCTAATTCATACCG+TGG - chr5_4:29312454-29312473 Msa0847380:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG + chr5_4:29312495-29312514 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG + chr5_4:29312697-29312716 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG - chr5_4:29313148-29313167 Msa0847380:CDS 35.0%
AATGAATGGGATCAATGACA+GGG - chr5_4:29313161-29313180 Msa0847380:CDS 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG + chr5_4:29313254-29313273 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG - chr5_4:29313712-29313731 Msa0847380:five_prime_UTR 35.0%
ATGATTATGGTCCAGATCAT+GGG - chr5_4:29313713-29313732 Msa0847380:five_prime_UTR 35.0%
GACAGAAGAGATAAGGTTTA+AGG + chr5_4:29313812-29313831 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG + chr5_4:29313937-29313956 None:intergenic 35.0%
! AAGGTTTGGTTAGTTGGTTG+AGG + chr5_4:29312109-29312128 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG - chr5_4:29312323-29312342 Msa0847380:CDS 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG - chr5_4:29312467-29312486 Msa0847380:intron 40.0%
GGTTCCAAATCTCAAAACCA+CGG + chr5_4:29312474-29312493 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG + chr5_4:29312595-29312614 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG - chr5_4:29312625-29312644 Msa0847380:intron 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG - chr5_4:29312709-29312728 Msa0847380:intron 40.0%
TAAACGAGTGCAAGCTAAAG+AGG + chr5_4:29312866-29312885 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG - chr5_4:29313062-29313081 Msa0847380:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG + chr5_4:29313142-29313161 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG - chr5_4:29313147-29313166 Msa0847380:CDS 40.0%
GAATGAATGGGATCAATGAC+AGG - chr5_4:29313160-29313179 Msa0847380:CDS 40.0%
AGCTGTGAAAGTAGTGTTGT+TGG + chr5_4:29313261-29313280 None:intergenic 40.0%
TCAACAGCTGTAAACATTGG+AGG - chr5_4:29313667-29313686 Msa0847380:exon 40.0%
CAACAGCTGTAAACATTGGA+GGG - chr5_4:29313668-29313687 Msa0847380:exon 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG - chr5_4:29313682-29313701 Msa0847380:five_prime_UTR 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG + chr5_4:29313761-29313780 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG + chr5_4:29313770-29313789 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG + chr5_4:29313883-29313902 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG + chr5_4:29313889-29313908 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG - chr5_4:29313892-29313911 Msa0847380:five_prime_UTR 40.0%
AAGAATTGCGTACCACTAGA+AGG + chr5_4:29313907-29313926 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG + chr5_4:29313931-29313950 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG + chr5_4:29313932-29313951 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG + chr5_4:29313933-29313952 None:intergenic 40.0%
! AAGGTTTGGTTAGTTGGTTG+AGG + chr5_4:29312109-29312128 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG - chr5_4:29312323-29312342 Msa0847380:CDS 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG - chr5_4:29312467-29312486 Msa0847380:intron 40.0%
GGTTCCAAATCTCAAAACCA+CGG + chr5_4:29312474-29312493 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG + chr5_4:29312595-29312614 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG - chr5_4:29312625-29312644 Msa0847380:intron 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG - chr5_4:29312709-29312728 Msa0847380:intron 40.0%
TAAACGAGTGCAAGCTAAAG+AGG + chr5_4:29312866-29312885 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG - chr5_4:29313062-29313081 Msa0847380:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG + chr5_4:29313142-29313161 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG - chr5_4:29313147-29313166 Msa0847380:CDS 40.0%
GAATGAATGGGATCAATGAC+AGG - chr5_4:29313160-29313179 Msa0847380:CDS 40.0%
AGCTGTGAAAGTAGTGTTGT+TGG + chr5_4:29313261-29313280 None:intergenic 40.0%
TCAACAGCTGTAAACATTGG+AGG - chr5_4:29313667-29313686 Msa0847380:exon 40.0%
CAACAGCTGTAAACATTGGA+GGG - chr5_4:29313668-29313687 Msa0847380:exon 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG - chr5_4:29313682-29313701 Msa0847380:five_prime_UTR 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG + chr5_4:29313761-29313780 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG + chr5_4:29313770-29313789 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG + chr5_4:29313883-29313902 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG + chr5_4:29313889-29313908 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG - chr5_4:29313892-29313911 Msa0847380:five_prime_UTR 40.0%
AAGAATTGCGTACCACTAGA+AGG + chr5_4:29313907-29313926 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG + chr5_4:29313931-29313950 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG + chr5_4:29313932-29313951 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG + chr5_4:29313933-29313952 None:intergenic 40.0%
CCAGAGGAGTAAAGATCTTG+TGG + chr5_4:29312553-29312572 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG - chr5_4:29312550-29312569 Msa0847380:intron 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG - chr5_4:29312562-29312581 Msa0847380:intron 45.0%
TGTTAGGAGTGAGACCTACT+AGG - chr5_4:29312578-29312597 Msa0847380:intron 45.0%
GTTAGGAGTGAGACCTACTA+GGG - chr5_4:29312579-29312598 Msa0847380:intron 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG + chr5_4:29312772-29312791 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG + chr5_4:29312889-29312908 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG + chr5_4:29313236-29313255 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG - chr5_4:29313573-29313592 Msa0847380:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG - chr5_4:29313596-29313615 Msa0847380:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG - chr5_4:29313760-29313779 Msa0847380:five_prime_UTR 45.0%
TCTAGTGGTACACTCCTTGA+AGG - chr5_4:29313775-29313794 Msa0847380:five_prime_UTR 45.0%
CTAGTGGTACACTCCTTGAA+GGG - chr5_4:29313776-29313795 Msa0847380:five_prime_UTR 45.0%
TAGTGGTACACTCCTTGAAG+GGG - chr5_4:29313777-29313796 Msa0847380:five_prime_UTR 45.0%
CATCAGGGACAGAAGAGATA+AGG + chr5_4:29313819-29313838 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG + chr5_4:29313868-29313887 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG + chr5_4:29313930-29313949 None:intergenic 45.0%
CACAGAACAGAACTGCAAAC+GGG + chr5_4:29312011-29312030 None:intergenic 45.0%
GCACAGAACAGAACTGCAAA+CGG + chr5_4:29312012-29312031 None:intergenic 45.0%
CCAGAGGAGTAAAGATCTTG+TGG + chr5_4:29312553-29312572 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG - chr5_4:29312550-29312569 Msa0847380:intron 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG - chr5_4:29312562-29312581 Msa0847380:intron 45.0%
TGTTAGGAGTGAGACCTACT+AGG - chr5_4:29312578-29312597 Msa0847380:intron 45.0%
GTTAGGAGTGAGACCTACTA+GGG - chr5_4:29312579-29312598 Msa0847380:intron 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG + chr5_4:29312772-29312791 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG + chr5_4:29312889-29312908 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG + chr5_4:29313236-29313255 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG - chr5_4:29313573-29313592 Msa0847380:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG - chr5_4:29313596-29313615 Msa0847380:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG - chr5_4:29313760-29313779 Msa0847380:five_prime_UTR 45.0%
TCTAGTGGTACACTCCTTGA+AGG - chr5_4:29313775-29313794 Msa0847380:five_prime_UTR 45.0%
CTAGTGGTACACTCCTTGAA+GGG - chr5_4:29313776-29313795 Msa0847380:five_prime_UTR 45.0%
TAGTGGTACACTCCTTGAAG+GGG - chr5_4:29313777-29313796 Msa0847380:five_prime_UTR 45.0%
CATCAGGGACAGAAGAGATA+AGG + chr5_4:29313819-29313838 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG + chr5_4:29313868-29313887 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG + chr5_4:29313930-29313949 None:intergenic 45.0%
!! AATTATCATTTAAAAAATTA+AGG - chr5_4:29313541-29313560 Msa0847380:CDS 5.0%
!! ATTATCATTTAAAAAATTAA+GGG - chr5_4:29313542-29313561 Msa0847380:CDS 5.0%
!! AATTATCATTTAAAAAATTA+AGG - chr5_4:29313541-29313560 Msa0847380:CDS 5.0%
!! ATTATCATTTAAAAAATTAA+GGG - chr5_4:29313542-29313561 Msa0847380:CDS 5.0%
CACTCCTAACACAACACCAG+AGG + chr5_4:29312569-29312588 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG + chr5_4:29312897-29312916 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG - chr5_4:29313830-29313849 Msa0847380:five_prime_UTR 50.0%
CCCAAACAGCAGTAGCATCA+GGG + chr5_4:29313834-29313853 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG - chr5_4:29313831-29313850 Msa0847380:five_prime_UTR 50.0%
TCCCAAACAGCAGTAGCATC+AGG + chr5_4:29313835-29313854 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG + chr5_4:29313899-29313918 None:intergenic 50.0%
CACTCCTAACACAACACCAG+AGG + chr5_4:29312569-29312588 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG + chr5_4:29312897-29312916 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG - chr5_4:29313830-29313849 Msa0847380:five_prime_UTR 50.0%
CCCAAACAGCAGTAGCATCA+GGG + chr5_4:29313834-29313853 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG - chr5_4:29313831-29313850 Msa0847380:five_prime_UTR 50.0%
TCCCAAACAGCAGTAGCATC+AGG + chr5_4:29313835-29313854 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG + chr5_4:29313899-29313918 None:intergenic 50.0%
AGATCTTGTGGCTGCTGCTG+AGG + chr5_4:29312541-29312560 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG + chr5_4:29312898-29312917 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG - chr5_4:29312898-29312917 Msa0847380:intron 55.0%
GCTGGAGAATTCACCACAGC+TGG + chr5_4:29313589-29313608 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG - chr5_4:29313780-29313799 Msa0847380:five_prime_UTR 55.0%
AGATCTTGTGGCTGCTGCTG+AGG + chr5_4:29312541-29312560 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG + chr5_4:29312898-29312917 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG - chr5_4:29312898-29312917 Msa0847380:intron 55.0%
GCTGGAGAATTCACCACAGC+TGG + chr5_4:29313589-29313608 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG - chr5_4:29313780-29313799 Msa0847380:five_prime_UTR 55.0%
CTCACGCACCTGAACTCTGC+TGG + chr5_4:29313607-29313626 None:intergenic 60.0%
CTCACGCACCTGAACTCTGC+TGG + chr5_4:29313607-29313626 None:intergenic 60.0%
AGGGCTGAGCCACCCCTTCA+AGG + chr5_4:29313792-29313811 None:intergenic 65.0%
AGGGCTGAGCCACCCCTTCA+AGG + chr5_4:29313792-29313811 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 29312011 29314028 29312011 ID=Msa0847380;Name=Msa0847380
chr5_4 mRNA 29312011 29314028 29312011 ID=Msa0847380-mRNA-1;Parent=Msa0847380;Name=Msa0847380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=347|1|1|1|1|1|2|83|314
chr5_4 exon 29312011 29312476 29312011 ID=Msa0847380-mRNA-1:exon:10908;Parent=Msa0847380-mRNA-1
chr5_4 exon 29313120 29314028 29313120 ID=Msa0847380-mRNA-1:exon:10907;Parent=Msa0847380-mRNA-1
chr5_4 five_prime_UTR 29313682 29314028 29313682 ID=Msa0847380-mRNA-1:five_prime_utr;Parent=Msa0847380-mRNA-1
chr5_4 CDS 29313120 29313681 29313120 ID=Msa0847380-mRNA-1:cds;Parent=Msa0847380-mRNA-1
chr5_4 CDS 29312094 29312476 29312094 ID=Msa0847380-mRNA-1:cds;Parent=Msa0847380-mRNA-1
chr5_4 three_prime_UTR 29312011 29312093 29312011 ID=Msa0847380-mRNA-1:three_prime_utr;Parent=Msa0847380-mRNA-1
Gene Sequence

>Msa0847380

ATGGCTAGTTTATTTTCATTAGGAAGAACTGAAGAAGAAAACCAACAGAATAATAATCCAACAACAGAATTCTGGTATAATACGAATGATGATTCTGTTGTTTCTAATTCATACCGTGGTTTTGAGATTTGGAACCAACATCTTCATCAACATCAACAACACTTGCTTTCTTTACAACAACCTCAGCAGCAGCCACAAGATCTTTACTCCTCTGGTGTTGTGTTAGGAGTGAGACCTACTAGGGTTTGTTCTTCTGATGAGAATAGATCTACTGTGTTTGTAGGAAGTGGAGATATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGCAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAGAGTACTTGGGTTCCTGCTGCTAGAAGAAGAGAAAGACAACAACAACTTTCTGCTCCTAAATCATCTCAACAACAACATGGAGAGAGAGATCTTAACAATAACAATTCCTCTTTAGCTTGCACTCGTTTACCTACAAACCCTTCACTCACTCTCCCTTCAGCAGGGCTATTAGAGGAGATGAATTTTCCAGCTGTGGTGAATTCTCCAGCAGAGTTCAGGTGCGTGAGAGTTAGCTCAGTTGATGAAAACGAAGAGAAGTATGCATATTCAACAGCTGTAAACATTGGAGGGCATGTTTTTAGAGGAATTTTGTATGATTATGGTCCAGATCATGGGAATAATAGTTACAATATGGCTACCGGAAACGCCTCTAATTCTAGTGGTACACTCCTTGAAGGGGTGGCTCAGCCCTTAAACCTTATCTCTTCTGTCCCTGATGCTACTGCTGTTTGGGAAATTGTTGATCCTTCTTCTTTGTATCCAGCTCCACTTAATACCTTCATGCCTTCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA

Protein sequence

>Msa0847380

MASLFSLGRTEEENQQNNNPTTEFWYNTNDDSVVSNSYRGFEIWNQHLHQHQQHLLSLQQPQQQPQDLYSSGVVLGVRPTRVCSSDENRSTVFVGSGDISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQLSAPKSSQQQHGERDLNNNNSSLACTRLPTNPSLTLPSAGLLEEMNFPAVVNSPAEFRCVRVSSVDENEEKYAYSTAVNIGGHVFRGILYDYGPDHGNNSYNMATGNASNSSGTLLEGVAQPLNLISSVPDATAVWEIVDPSSLYPAPLNTFMPSSGTQFFPHPRS*