Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847420 | XP_024640580.1 | 99.419 | 172 | 1 | 0 | 1 | 172 | 1 | 172 | 3.03e-123 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847420 | sp|Q8L925|CRC_ARATH | 67.429 | 175 | 49 | 5 | 1 | 171 | 1 | 171 | 1.18e-63 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847420 | G7JWX9 | 99.415 | 171 | 1 | 0 | 1 | 171 | 1 | 171 | 6.33e-122 | 352 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0847420 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847420 | MtrunA17_Chr5g0419871 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 8.82e-111 | 312 |
| Msa0847420 | MtrunA17_Chr4g0063931 | 43.636 | 165 | 64 | 4 | 8 | 155 | 5 | 157 | 6.68e-41 | 136 |
| Msa0847420 | MtrunA17_Chr2g0322221 | 48.485 | 165 | 67 | 6 | 7 | 155 | 1 | 163 | 6.92e-40 | 134 |
| Msa0847420 | MtrunA17_Chr4g0025361 | 45.806 | 155 | 74 | 4 | 7 | 155 | 1 | 151 | 8.03e-40 | 133 |
| Msa0847420 | MtrunA17_Chr4g0011841 | 44.654 | 159 | 61 | 4 | 19 | 155 | 25 | 178 | 1.36e-35 | 123 |
| Msa0847420 | MtrunA17_Chr4g0056521 | 45.399 | 163 | 71 | 3 | 10 | 155 | 12 | 173 | 3.18e-35 | 122 |
| Msa0847420 | MtrunA17_Chr5g0413381 | 42.568 | 148 | 74 | 2 | 17 | 153 | 12 | 159 | 4.50e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847420 | AT1G69180.1 | 67.429 | 175 | 49 | 5 | 1 | 171 | 1 | 171 | 1.20e-64 | 196 |
| Msa0847420 | AT1G08465.1 | 48.408 | 157 | 62 | 5 | 12 | 155 | 3 | 153 | 4.89e-40 | 134 |
| Msa0847420 | AT2G26580.2 | 44.444 | 153 | 60 | 3 | 15 | 155 | 7 | 146 | 1.76e-38 | 129 |
| Msa0847420 | AT2G26580.1 | 44.444 | 153 | 60 | 3 | 15 | 155 | 7 | 146 | 1.76e-38 | 129 |
| Msa0847420 | AT2G45190.1 | 47.024 | 168 | 65 | 7 | 10 | 155 | 17 | 182 | 2.68e-37 | 128 |
| Msa0847420 | AT4G00180.1 | 39.779 | 181 | 71 | 5 | 10 | 155 | 17 | 194 | 2.44e-31 | 113 |
| Msa0847420 | AT1G23420.1 | 37.107 | 159 | 81 | 3 | 18 | 157 | 20 | 178 | 4.19e-28 | 105 |
| Msa0847420 | AT1G23420.2 | 37.342 | 158 | 80 | 3 | 19 | 157 | 52 | 209 | 7.98e-28 | 105 |
| Msa0847420 | AT4G00180.2 | 35.758 | 165 | 69 | 4 | 26 | 155 | 1 | 163 | 6.47e-22 | 88.2 |
| Msa0847420 | AT2G45190.2 | 72.727 | 55 | 14 | 1 | 101 | 155 | 65 | 118 | 3.72e-21 | 85.1 |
Find 38 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAACTGGTTGGTGAATT+TGG | 0.207087 | 5_4:-29410519 | None:intergenic |
| CCATGGTAACTTTCTCTTCA+TGG | 0.253602 | 5_4:-29408819 | None:intergenic |
| ACAACAAATGGCGGTGGTCT+AGG | 0.360978 | 5_4:-29409831 | None:intergenic |
| TGCTTACGTTTGACAACAAA+TGG | 0.386547 | 5_4:-29409843 | None:intergenic |
| CAACAAATGGCGGTGGTCTA+GGG | 0.442200 | 5_4:-29409830 | None:intergenic |
| TTTAGTTGCAGAAATTGAAC+TGG | 0.447192 | 5_4:-29410532 | None:intergenic |
| GGAAGACGGTGCTTCTTCTC+AGG | 0.456267 | 5_4:-29410024 | None:intergenic |
| ATTGCACTTACTTCATGAAA+CGG | 0.472131 | 5_4:-29410059 | None:intergenic |
| TGATCACACCCTCAGTCTCC+AGG | 0.486490 | 5_4:+29409272 | Msa0847420:CDS |
| CAACTTTATCACAGTGGGCT+AGG | 0.506444 | 5_4:+29410490 | Msa0847420:intron |
| AGAGAAAGTTACCATGGACT+TGG | 0.516644 | 5_4:+29408825 | Msa0847420:CDS |
| CACTGAAAGCTTCTCGATGT+GGG | 0.523718 | 5_4:-29410324 | None:intergenic |
| TTTGGAACTTGGTGGTCTTG+TGG | 0.524145 | 5_4:-29409238 | None:intergenic |
| GCTTCTCGATGTGGGATCTG+AGG | 0.524810 | 5_4:-29410316 | None:intergenic |
| CTTCTCGATGTGGGATCTGA+GGG | 0.529903 | 5_4:-29410315 | None:intergenic |
| ATGAAACGGTTGTATGCAGA+TGG | 0.547267 | 5_4:-29410045 | None:intergenic |
| GCACTGAAAGCTTCTCGATG+TGG | 0.561704 | 5_4:-29410325 | None:intergenic |
| TCGATGTGGGATCTGAGGGT+TGG | 0.564009 | 5_4:-29410311 | None:intergenic |
| AAGAATGAACCTGGAGACTG+AGG | 0.579773 | 5_4:-29409281 | None:intergenic |
| TAACAAAGGTGTTGATCAGA+TGG | 0.588546 | 5_4:-29408853 | None:intergenic |
| AGTGACTCAGTTGATGTAGT+TGG | 0.590905 | 5_4:-29409804 | None:intergenic |
| GTTGCAGAAATTGAACTGGT+TGG | 0.594902 | 5_4:-29410528 | None:intergenic |
| AACAAATGGCGGTGGTCTAG+GGG | 0.595027 | 5_4:-29409829 | None:intergenic |
| GTTGGTGAAGAAGAAGATGA+TGG | 0.609575 | 5_4:-29409786 | None:intergenic |
| CGTTTGACAACAAATGGCGG+TGG | 0.615312 | 5_4:-29409837 | None:intergenic |
| TTCTGCAACTAAAAGAAACA+TGG | 0.625760 | 5_4:+29410542 | Msa0847420:CDS |
| AGATGGTGGAACCAAGTCCA+TGG | 0.626957 | 5_4:-29408836 | None:intergenic |
| CCATGAAGAGAAAGTTACCA+TGG | 0.629385 | 5_4:+29408819 | Msa0847420:CDS |
| GTATCTAGCAGCCTCTTGCA+TGG | 0.634316 | 5_4:-29409171 | None:intergenic |
| CAAAGGTGTTGATCAGATGG+TGG | 0.641754 | 5_4:-29408850 | None:intergenic |
| GGTTGTATGCAGATGGAAGA+CGG | 0.643999 | 5_4:-29410038 | None:intergenic |
| AGAATGAACCTGGAGACTGA+GGG | 0.648884 | 5_4:-29409280 | None:intergenic |
| GTGAAGAAGAAGATGATGGT+TGG | 0.655028 | 5_4:-29409782 | None:intergenic |
| AGTTGCAACGAACGTAACAA+AGG | 0.660534 | 5_4:-29408867 | None:intergenic |
| AGGTTGGCATACCATGCAAG+AGG | 0.666035 | 5_4:+29409160 | Msa0847420:intron |
| TTACGTTTGACAACAAATGG+CGG | 0.707489 | 5_4:-29409840 | None:intergenic |
| GATACTGTGACAGTGAAGTG+TGG | 0.709816 | 5_4:+29409189 | Msa0847420:CDS |
| GTCTTGTGGTGAGAAAAGAG+AGG | 0.744847 | 5_4:-29409224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTAATTAATAAAA+AGG | - | chr5_4:29409698-29409717 | None:intergenic | 0.0% |
| !! | TAATTAATTAATTAATAAAA+AGG | - | chr5_4:29409698-29409717 | None:intergenic | 0.0% |
| !!! | ACAAATTTTTAGAAATATTA+TGG | + | chr5_4:29409069-29409088 | Msa0847420:intron | 10.0% |
| !!! | GGTAATTTTTTTTTTTTTTA+AGG | + | chr5_4:29409367-29409386 | Msa0847420:intron | 10.0% |
| !!! | TTCATAATAATCAATTTTTT+TGG | - | chr5_4:29409574-29409593 | None:intergenic | 10.0% |
| !!! | TAGTATAGTATATATTTTAA+GGG | - | chr5_4:29410193-29410212 | None:intergenic | 10.0% |
| !!! | ATAGTATAGTATATATTTTA+AGG | - | chr5_4:29410194-29410213 | None:intergenic | 10.0% |
| !!! | ACAAATTTTTAGAAATATTA+TGG | + | chr5_4:29409069-29409088 | Msa0847420:intron | 10.0% |
| !!! | GGTAATTTTTTTTTTTTTTA+AGG | + | chr5_4:29409367-29409386 | Msa0847420:intron | 10.0% |
| !!! | TTCATAATAATCAATTTTTT+TGG | - | chr5_4:29409574-29409593 | None:intergenic | 10.0% |
| !!! | TAGTATAGTATATATTTTAA+GGG | - | chr5_4:29410193-29410212 | None:intergenic | 10.0% |
| !!! | ATAGTATAGTATATATTTTA+AGG | - | chr5_4:29410194-29410213 | None:intergenic | 10.0% |
| !! | TGATATATGAATTATATCAA+AGG | - | chr5_4:29408932-29408951 | None:intergenic | 15.0% |
| !!! | TAAATTTTCCTAAAATATGT+AGG | + | chr5_4:29409115-29409134 | Msa0847420:intron | 15.0% |
| !!! | AAATTTTCCTAAAATATGTA+GGG | + | chr5_4:29409116-29409135 | Msa0847420:intron | 15.0% |
| !!! | TAATAATCAATTTTTTTGGT+GGG | - | chr5_4:29409570-29409589 | None:intergenic | 15.0% |
| !!! | ATAATAATCAATTTTTTTGG+TGG | - | chr5_4:29409571-29409590 | None:intergenic | 15.0% |
| !!! | ATAAAAAATGCAAACATTTT+TGG | - | chr5_4:29410356-29410375 | None:intergenic | 15.0% |
| !! | TGATATATGAATTATATCAA+AGG | - | chr5_4:29408932-29408951 | None:intergenic | 15.0% |
| !!! | TAAATTTTCCTAAAATATGT+AGG | + | chr5_4:29409115-29409134 | Msa0847420:intron | 15.0% |
| !!! | AAATTTTCCTAAAATATGTA+GGG | + | chr5_4:29409116-29409135 | Msa0847420:intron | 15.0% |
| !!! | TAATAATCAATTTTTTTGGT+GGG | - | chr5_4:29409570-29409589 | None:intergenic | 15.0% |
| !!! | ATAATAATCAATTTTTTTGG+TGG | - | chr5_4:29409571-29409590 | None:intergenic | 15.0% |
| !!! | ATAAAAAATGCAAACATTTT+TGG | - | chr5_4:29410356-29410375 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAGAATGAACC+TGG | - | chr5_4:29409293-29409312 | None:intergenic | 20.0% |
| !! | TTATTATTATGAACATAACC+AGG | + | chr5_4:29409315-29409334 | Msa0847420:intron | 20.0% |
| !! | TATTATTATGAACATAACCA+GGG | + | chr5_4:29409316-29409335 | Msa0847420:intron | 20.0% |
| !! | AATTATGAAAATAATGAACC+TGG | - | chr5_4:29409541-29409560 | None:intergenic | 20.0% |
| !!! | AATAATCAATTTTTTTGGTG+GGG | - | chr5_4:29409569-29409588 | None:intergenic | 20.0% |
| !!! | ATGATGAGTTTTATATGTAT+TGG | + | chr5_4:29409671-29409690 | Msa0847420:intron | 20.0% |
| !!! | TCCTCTTTTATTTTCTTATT+AGG | + | chr5_4:29410375-29410394 | Msa0847420:intron | 20.0% |
| !!! | CCTCTTTTATTTTCTTATTA+GGG | + | chr5_4:29410376-29410395 | Msa0847420:intron | 20.0% |
| !! | AAAAAAAAAAAGAATGAACC+TGG | - | chr5_4:29409293-29409312 | None:intergenic | 20.0% |
| !! | TTATTATTATGAACATAACC+AGG | + | chr5_4:29409315-29409334 | Msa0847420:intron | 20.0% |
| !! | TATTATTATGAACATAACCA+GGG | + | chr5_4:29409316-29409335 | Msa0847420:intron | 20.0% |
| !! | AATTATGAAAATAATGAACC+TGG | - | chr5_4:29409541-29409560 | None:intergenic | 20.0% |
| !!! | AATAATCAATTTTTTTGGTG+GGG | - | chr5_4:29409569-29409588 | None:intergenic | 20.0% |
| !!! | ATGATGAGTTTTATATGTAT+TGG | + | chr5_4:29409671-29409690 | Msa0847420:intron | 20.0% |
| !!! | TCCTCTTTTATTTTCTTATT+AGG | + | chr5_4:29410375-29410394 | Msa0847420:intron | 20.0% |
| !!! | CCTCTTTTATTTTCTTATTA+GGG | + | chr5_4:29410376-29410395 | Msa0847420:intron | 20.0% |
| ! | AGTTTAATATACATACAGCT+AGG | - | chr5_4:29408906-29408925 | None:intergenic | 25.0% |
| !! | AGTTAACAAGTTGAAAATGA+TGG | - | chr5_4:29408960-29408979 | None:intergenic | 25.0% |
| !! | TAGAGTGGTAAATTTTGTAT+AGG | - | chr5_4:29409027-29409046 | None:intergenic | 25.0% |
| ! | ATTATTATGAACATAACCAG+GGG | + | chr5_4:29409317-29409336 | Msa0847420:intron | 25.0% |
| !! | ATCTGAGATTGAATTATTAG+TGG | + | chr5_4:29409343-29409362 | Msa0847420:intron | 25.0% |
| !! | TCTGAGATTGAATTATTAGT+GGG | + | chr5_4:29409344-29409363 | Msa0847420:intron | 25.0% |
| !!! | GGAAGTAAGACTAAATTTTT+TGG | + | chr5_4:29409388-29409407 | Msa0847420:intron | 25.0% |
| ! | CCCTAATAAGAAAATAAAAG+AGG | - | chr5_4:29410379-29410398 | None:intergenic | 25.0% |
| ! | ATATATATATAGCACTGCTT+TGG | + | chr5_4:29410403-29410422 | Msa0847420:intron | 25.0% |
| ! | AGAATACTATACTATAGTCT+TGG | - | chr5_4:29410608-29410627 | None:intergenic | 25.0% |
| ! | AAGACTATAGTATAGTATTC+TGG | + | chr5_4:29410607-29410626 | Msa0847420:intron | 25.0% |
| ! | AGTTTAATATACATACAGCT+AGG | - | chr5_4:29408906-29408925 | None:intergenic | 25.0% |
| !! | AGTTAACAAGTTGAAAATGA+TGG | - | chr5_4:29408960-29408979 | None:intergenic | 25.0% |
| !! | TAGAGTGGTAAATTTTGTAT+AGG | - | chr5_4:29409027-29409046 | None:intergenic | 25.0% |
| ! | ATTATTATGAACATAACCAG+GGG | + | chr5_4:29409317-29409336 | Msa0847420:intron | 25.0% |
| !! | ATCTGAGATTGAATTATTAG+TGG | + | chr5_4:29409343-29409362 | Msa0847420:intron | 25.0% |
| !! | TCTGAGATTGAATTATTAGT+GGG | + | chr5_4:29409344-29409363 | Msa0847420:intron | 25.0% |
| !!! | GGAAGTAAGACTAAATTTTT+TGG | + | chr5_4:29409388-29409407 | Msa0847420:intron | 25.0% |
| ! | CCCTAATAAGAAAATAAAAG+AGG | - | chr5_4:29410379-29410398 | None:intergenic | 25.0% |
| ! | ATATATATATAGCACTGCTT+TGG | + | chr5_4:29410403-29410422 | Msa0847420:intron | 25.0% |
| ! | AGAATACTATACTATAGTCT+TGG | - | chr5_4:29410608-29410627 | None:intergenic | 25.0% |
| ! | AAGACTATAGTATAGTATTC+TGG | + | chr5_4:29410607-29410626 | Msa0847420:intron | 25.0% |
| ! | AACAAGTTGAAAATGATGGA+TGG | - | chr5_4:29408956-29408975 | None:intergenic | 30.0% |
| !!! | ACAGTTTGATTTTTGGAACT+TGG | - | chr5_4:29409252-29409271 | None:intergenic | 30.0% |
| !! | GTGATCAACAGTTTGATTTT+TGG | - | chr5_4:29409259-29409278 | None:intergenic | 30.0% |
| CTGAGATTGAATTATTAGTG+GGG | + | chr5_4:29409345-29409364 | Msa0847420:intron | 30.0% | |
| TGAGATTGAATTATTAGTGG+GGG | + | chr5_4:29409346-29409365 | Msa0847420:intron | 30.0% | |
| !! | AGAATACTTTTGTTTGTAGC+AGG | + | chr5_4:29409737-29409756 | Msa0847420:intron | 30.0% |
| !! | GAATACTTTTGTTTGTAGCA+GGG | + | chr5_4:29409738-29409757 | Msa0847420:intron | 30.0% |
| !! | AATACTTTTGTTTGTAGCAG+GGG | + | chr5_4:29409739-29409758 | Msa0847420:intron | 30.0% |
| TTAGAGAGTAATGGTGAAAA+GGG | - | chr5_4:29409870-29409889 | None:intergenic | 30.0% | |
| GATATTTCCTTAGAGAGTAA+TGG | - | chr5_4:29409879-29409898 | None:intergenic | 30.0% | |
| ATTGCACTTACTTCATGAAA+CGG | - | chr5_4:29410062-29410081 | None:intergenic | 30.0% | |
| !! | ATACTTTTTATCTGTCAGAG+AGG | + | chr5_4:29410267-29410286 | Msa0847420:intron | 30.0% |
| ! | TGTGTAACACAAGTTAGTTT+AGG | - | chr5_4:29410472-29410491 | None:intergenic | 30.0% |
| TTACACAACTTTATCACAGT+GGG | + | chr5_4:29410485-29410504 | Msa0847420:intron | 30.0% | |
| TTTAGTTGCAGAAATTGAAC+TGG | - | chr5_4:29410535-29410554 | None:intergenic | 30.0% | |
| TTCTGCAACTAAAAGAAACA+TGG | + | chr5_4:29410542-29410561 | Msa0847420:CDS | 30.0% | |
| ! | AACAAGTTGAAAATGATGGA+TGG | - | chr5_4:29408956-29408975 | None:intergenic | 30.0% |
| !!! | ACAGTTTGATTTTTGGAACT+TGG | - | chr5_4:29409252-29409271 | None:intergenic | 30.0% |
| !! | GTGATCAACAGTTTGATTTT+TGG | - | chr5_4:29409259-29409278 | None:intergenic | 30.0% |
| CTGAGATTGAATTATTAGTG+GGG | + | chr5_4:29409345-29409364 | Msa0847420:intron | 30.0% | |
| TGAGATTGAATTATTAGTGG+GGG | + | chr5_4:29409346-29409365 | Msa0847420:intron | 30.0% | |
| !! | AGAATACTTTTGTTTGTAGC+AGG | + | chr5_4:29409737-29409756 | Msa0847420:intron | 30.0% |
| !! | GAATACTTTTGTTTGTAGCA+GGG | + | chr5_4:29409738-29409757 | Msa0847420:intron | 30.0% |
| !! | AATACTTTTGTTTGTAGCAG+GGG | + | chr5_4:29409739-29409758 | Msa0847420:intron | 30.0% |
| TTAGAGAGTAATGGTGAAAA+GGG | - | chr5_4:29409870-29409889 | None:intergenic | 30.0% | |
| GATATTTCCTTAGAGAGTAA+TGG | - | chr5_4:29409879-29409898 | None:intergenic | 30.0% | |
| ATTGCACTTACTTCATGAAA+CGG | - | chr5_4:29410062-29410081 | None:intergenic | 30.0% | |
| !! | ATACTTTTTATCTGTCAGAG+AGG | + | chr5_4:29410267-29410286 | Msa0847420:intron | 30.0% |
| ! | TGTGTAACACAAGTTAGTTT+AGG | - | chr5_4:29410472-29410491 | None:intergenic | 30.0% |
| TTACACAACTTTATCACAGT+GGG | + | chr5_4:29410485-29410504 | Msa0847420:intron | 30.0% | |
| TTTAGTTGCAGAAATTGAAC+TGG | - | chr5_4:29410535-29410554 | None:intergenic | 30.0% | |
| TTCTGCAACTAAAAGAAACA+TGG | + | chr5_4:29410542-29410561 | Msa0847420:CDS | 30.0% | |
| !! | TAACAAAGGTGTTGATCAGA+TGG | - | chr5_4:29408856-29408875 | None:intergenic | 35.0% |
| ACCACTCTATCACTTAGATA+TGG | + | chr5_4:29409038-29409057 | Msa0847420:intron | 35.0% | |
| TCCATATCTAAGTGATAGAG+TGG | - | chr5_4:29409042-29409061 | None:intergenic | 35.0% | |
| TCCTAAAATATGTAGGGTTG+TGG | + | chr5_4:29409122-29409141 | Msa0847420:intron | 35.0% | |
| ! | ACCACAACCCTACATATTTT+AGG | - | chr5_4:29409126-29409145 | None:intergenic | 35.0% |
| !! | TGTGGTTTGTTATGTCATGT+AGG | + | chr5_4:29409140-29409159 | Msa0847420:intron | 35.0% |
| !! | GTTTGTTATGTCATGTAGGT+TGG | + | chr5_4:29409144-29409163 | Msa0847420:intron | 35.0% |
| !!! | GTTTGATTTTTGGAACTTGG+TGG | - | chr5_4:29409249-29409268 | None:intergenic | 35.0% |
| GGGATTTACAGTAGCAAAAA+AGG | + | chr5_4:29409759-29409778 | Msa0847420:CDS | 35.0% | |
| TTACGTTTGACAACAAATGG+CGG | - | chr5_4:29409843-29409862 | None:intergenic | 35.0% | |
| TGCTTACGTTTGACAACAAA+TGG | - | chr5_4:29409846-29409865 | None:intergenic | 35.0% | |
| CTTAGAGAGTAATGGTGAAA+AGG | - | chr5_4:29409871-29409890 | None:intergenic | 35.0% | |
| ! | CTTTTCACCATTACTCTCTA+AGG | + | chr5_4:29409869-29409888 | Msa0847420:intron | 35.0% |
| AACCAACCATAACTACAAGA+TGG | + | chr5_4:29410152-29410171 | Msa0847420:intron | 35.0% | |
| TACCATCTTGTAGTTATGGT+TGG | - | chr5_4:29410157-29410176 | None:intergenic | 35.0% | |
| GTGTTACCATCTTGTAGTTA+TGG | - | chr5_4:29410161-29410180 | None:intergenic | 35.0% | |
| GTTACACAACTTTATCACAG+TGG | + | chr5_4:29410484-29410503 | Msa0847420:intron | 35.0% | |
| !! | ATTGAACTGGTTGGTGAATT+TGG | - | chr5_4:29410522-29410541 | None:intergenic | 35.0% |
| TTCTGTATGCTTATTTGTGC+AGG | + | chr5_4:29410638-29410657 | Msa0847420:intron | 35.0% | |
| !! | TAACAAAGGTGTTGATCAGA+TGG | - | chr5_4:29408856-29408875 | None:intergenic | 35.0% |
| ACCACTCTATCACTTAGATA+TGG | + | chr5_4:29409038-29409057 | Msa0847420:intron | 35.0% | |
| TCCATATCTAAGTGATAGAG+TGG | - | chr5_4:29409042-29409061 | None:intergenic | 35.0% | |
| TCCTAAAATATGTAGGGTTG+TGG | + | chr5_4:29409122-29409141 | Msa0847420:intron | 35.0% | |
| ! | ACCACAACCCTACATATTTT+AGG | - | chr5_4:29409126-29409145 | None:intergenic | 35.0% |
| !! | TGTGGTTTGTTATGTCATGT+AGG | + | chr5_4:29409140-29409159 | Msa0847420:intron | 35.0% |
| !! | GTTTGTTATGTCATGTAGGT+TGG | + | chr5_4:29409144-29409163 | Msa0847420:intron | 35.0% |
| !!! | GTTTGATTTTTGGAACTTGG+TGG | - | chr5_4:29409249-29409268 | None:intergenic | 35.0% |
| GGGATTTACAGTAGCAAAAA+AGG | + | chr5_4:29409759-29409778 | Msa0847420:CDS | 35.0% | |
| TTACGTTTGACAACAAATGG+CGG | - | chr5_4:29409843-29409862 | None:intergenic | 35.0% | |
| TGCTTACGTTTGACAACAAA+TGG | - | chr5_4:29409846-29409865 | None:intergenic | 35.0% | |
| CTTAGAGAGTAATGGTGAAA+AGG | - | chr5_4:29409871-29409890 | None:intergenic | 35.0% | |
| ! | CTTTTCACCATTACTCTCTA+AGG | + | chr5_4:29409869-29409888 | Msa0847420:intron | 35.0% |
| AACCAACCATAACTACAAGA+TGG | + | chr5_4:29410152-29410171 | Msa0847420:intron | 35.0% | |
| TACCATCTTGTAGTTATGGT+TGG | - | chr5_4:29410157-29410176 | None:intergenic | 35.0% | |
| GTGTTACCATCTTGTAGTTA+TGG | - | chr5_4:29410161-29410180 | None:intergenic | 35.0% | |
| GTTACACAACTTTATCACAG+TGG | + | chr5_4:29410484-29410503 | Msa0847420:intron | 35.0% | |
| !! | ATTGAACTGGTTGGTGAATT+TGG | - | chr5_4:29410522-29410541 | None:intergenic | 35.0% |
| TTCTGTATGCTTATTTGTGC+AGG | + | chr5_4:29410638-29410657 | Msa0847420:intron | 35.0% | |
| CCATGGTAACTTTCTCTTCA+TGG | - | chr5_4:29408822-29408841 | None:intergenic | 40.0% | |
| CCATGAAGAGAAAGTTACCA+TGG | + | chr5_4:29408819-29408838 | Msa0847420:CDS | 40.0% | |
| AGAGAAAGTTACCATGGACT+TGG | + | chr5_4:29408825-29408844 | Msa0847420:CDS | 40.0% | |
| AGTTGCAACGAACGTAACAA+AGG | - | chr5_4:29408870-29408889 | None:intergenic | 40.0% | |
| ATTATGAACATAACCAGGGG+AGG | + | chr5_4:29409320-29409339 | Msa0847420:intron | 40.0% | |
| ATAATGAACCTGGAGACTGA+GGG | - | chr5_4:29409531-29409550 | None:intergenic | 40.0% | |
| AATAATGAACCTGGAGACTG+AGG | - | chr5_4:29409532-29409551 | None:intergenic | 40.0% | |
| ! | GTGAAGAAGAAGATGATGGT+TGG | - | chr5_4:29409785-29409804 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGAAGAAGATGA+TGG | - | chr5_4:29409789-29409808 | None:intergenic | 40.0% |
| ! | AGTGACTCAGTTGATGTAGT+TGG | - | chr5_4:29409807-29409826 | None:intergenic | 40.0% |
| ATGAAACGGTTGTATGCAGA+TGG | - | chr5_4:29410048-29410067 | None:intergenic | 40.0% | |
| GTTGCAGAAATTGAACTGGT+TGG | - | chr5_4:29410531-29410550 | None:intergenic | 40.0% | |
| ! | CTATAGTCTTGGAATGTGCA+TGG | - | chr5_4:29410597-29410616 | None:intergenic | 40.0% |
| CCATGGTAACTTTCTCTTCA+TGG | - | chr5_4:29408822-29408841 | None:intergenic | 40.0% | |
| CCATGAAGAGAAAGTTACCA+TGG | + | chr5_4:29408819-29408838 | Msa0847420:CDS | 40.0% | |
| AGAGAAAGTTACCATGGACT+TGG | + | chr5_4:29408825-29408844 | Msa0847420:CDS | 40.0% | |
| AGTTGCAACGAACGTAACAA+AGG | - | chr5_4:29408870-29408889 | None:intergenic | 40.0% | |
| ATTATGAACATAACCAGGGG+AGG | + | chr5_4:29409320-29409339 | Msa0847420:intron | 40.0% | |
| ATAATGAACCTGGAGACTGA+GGG | - | chr5_4:29409531-29409550 | None:intergenic | 40.0% | |
| AATAATGAACCTGGAGACTG+AGG | - | chr5_4:29409532-29409551 | None:intergenic | 40.0% | |
| ! | GTGAAGAAGAAGATGATGGT+TGG | - | chr5_4:29409785-29409804 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGAAGAAGATGA+TGG | - | chr5_4:29409789-29409808 | None:intergenic | 40.0% |
| ! | AGTGACTCAGTTGATGTAGT+TGG | - | chr5_4:29409807-29409826 | None:intergenic | 40.0% |
| ATGAAACGGTTGTATGCAGA+TGG | - | chr5_4:29410048-29410067 | None:intergenic | 40.0% | |
| GTTGCAGAAATTGAACTGGT+TGG | - | chr5_4:29410531-29410550 | None:intergenic | 40.0% | |
| ! | CTATAGTCTTGGAATGTGCA+TGG | - | chr5_4:29410597-29410616 | None:intergenic | 40.0% |
| !! | CAAAGGTGTTGATCAGATGG+TGG | - | chr5_4:29408853-29408872 | None:intergenic | 45.0% |
| GATACTGTGACAGTGAAGTG+TGG | + | chr5_4:29409189-29409208 | Msa0847420:CDS | 45.0% | |
| GTCTTGTGGTGAGAAAAGAG+AGG | - | chr5_4:29409227-29409246 | None:intergenic | 45.0% | |
| ! | TTTGGAACTTGGTGGTCTTG+TGG | - | chr5_4:29409241-29409260 | None:intergenic | 45.0% |
| AGAATGAACCTGGAGACTGA+GGG | - | chr5_4:29409283-29409302 | None:intergenic | 45.0% | |
| AAGAATGAACCTGGAGACTG+AGG | - | chr5_4:29409284-29409303 | None:intergenic | 45.0% | |
| GGTTGTATGCAGATGGAAGA+CGG | - | chr5_4:29410041-29410060 | None:intergenic | 45.0% | |
| CACTGAAAGCTTCTCGATGT+GGG | - | chr5_4:29410327-29410346 | None:intergenic | 45.0% | |
| ! | CAACTTTATCACAGTGGGCT+AGG | + | chr5_4:29410490-29410509 | Msa0847420:intron | 45.0% |
| !! | CAAAGGTGTTGATCAGATGG+TGG | - | chr5_4:29408853-29408872 | None:intergenic | 45.0% |
| GATACTGTGACAGTGAAGTG+TGG | + | chr5_4:29409189-29409208 | Msa0847420:CDS | 45.0% | |
| GTCTTGTGGTGAGAAAAGAG+AGG | - | chr5_4:29409227-29409246 | None:intergenic | 45.0% | |
| ! | TTTGGAACTTGGTGGTCTTG+TGG | - | chr5_4:29409241-29409260 | None:intergenic | 45.0% |
| AGAATGAACCTGGAGACTGA+GGG | - | chr5_4:29409283-29409302 | None:intergenic | 45.0% | |
| AAGAATGAACCTGGAGACTG+AGG | - | chr5_4:29409284-29409303 | None:intergenic | 45.0% | |
| GGTTGTATGCAGATGGAAGA+CGG | - | chr5_4:29410041-29410060 | None:intergenic | 45.0% | |
| CACTGAAAGCTTCTCGATGT+GGG | - | chr5_4:29410327-29410346 | None:intergenic | 45.0% | |
| ! | CAACTTTATCACAGTGGGCT+AGG | + | chr5_4:29410490-29410509 | Msa0847420:intron | 45.0% |
| !! | AGATGGTGGAACCAAGTCCA+TGG | - | chr5_4:29408839-29408858 | None:intergenic | 50.0% |
| AGGTTGGCATACCATGCAAG+AGG | + | chr5_4:29409160-29409179 | Msa0847420:intron | 50.0% | |
| GTATCTAGCAGCCTCTTGCA+TGG | - | chr5_4:29409174-29409193 | None:intergenic | 50.0% | |
| TTCAATCTCAGATCCTCCCC+TGG | - | chr5_4:29409336-29409355 | None:intergenic | 50.0% | |
| AACAAATGGCGGTGGTCTAG+GGG | - | chr5_4:29409832-29409851 | None:intergenic | 50.0% | |
| CAACAAATGGCGGTGGTCTA+GGG | - | chr5_4:29409833-29409852 | None:intergenic | 50.0% | |
| ACAACAAATGGCGGTGGTCT+AGG | - | chr5_4:29409834-29409853 | None:intergenic | 50.0% | |
| CGTTTGACAACAAATGGCGG+TGG | - | chr5_4:29409840-29409859 | None:intergenic | 50.0% | |
| CTTCTCGATGTGGGATCTGA+GGG | - | chr5_4:29410318-29410337 | None:intergenic | 50.0% | |
| GCACTGAAAGCTTCTCGATG+TGG | - | chr5_4:29410328-29410347 | None:intergenic | 50.0% | |
| !! | AGATGGTGGAACCAAGTCCA+TGG | - | chr5_4:29408839-29408858 | None:intergenic | 50.0% |
| AGGTTGGCATACCATGCAAG+AGG | + | chr5_4:29409160-29409179 | Msa0847420:intron | 50.0% | |
| GTATCTAGCAGCCTCTTGCA+TGG | - | chr5_4:29409174-29409193 | None:intergenic | 50.0% | |
| TTCAATCTCAGATCCTCCCC+TGG | - | chr5_4:29409336-29409355 | None:intergenic | 50.0% | |
| AACAAATGGCGGTGGTCTAG+GGG | - | chr5_4:29409832-29409851 | None:intergenic | 50.0% | |
| CAACAAATGGCGGTGGTCTA+GGG | - | chr5_4:29409833-29409852 | None:intergenic | 50.0% | |
| ACAACAAATGGCGGTGGTCT+AGG | - | chr5_4:29409834-29409853 | None:intergenic | 50.0% | |
| CGTTTGACAACAAATGGCGG+TGG | - | chr5_4:29409840-29409859 | None:intergenic | 50.0% | |
| CTTCTCGATGTGGGATCTGA+GGG | - | chr5_4:29410318-29410337 | None:intergenic | 50.0% | |
| GCACTGAAAGCTTCTCGATG+TGG | - | chr5_4:29410328-29410347 | None:intergenic | 50.0% | |
| TGATCACACCCTCAGTCTCC+AGG | + | chr5_4:29409272-29409291 | Msa0847420:CDS | 55.0% | |
| GGAAGACGGTGCTTCTTCTC+AGG | - | chr5_4:29410027-29410046 | None:intergenic | 55.0% | |
| TCGATGTGGGATCTGAGGGT+TGG | - | chr5_4:29410314-29410333 | None:intergenic | 55.0% | |
| GCTTCTCGATGTGGGATCTG+AGG | - | chr5_4:29410319-29410338 | None:intergenic | 55.0% | |
| TGATCACACCCTCAGTCTCC+AGG | + | chr5_4:29409272-29409291 | Msa0847420:CDS | 55.0% | |
| GGAAGACGGTGCTTCTTCTC+AGG | - | chr5_4:29410027-29410046 | None:intergenic | 55.0% | |
| TCGATGTGGGATCTGAGGGT+TGG | - | chr5_4:29410314-29410333 | None:intergenic | 55.0% | |
| GCTTCTCGATGTGGGATCTG+AGG | - | chr5_4:29410319-29410338 | None:intergenic | 55.0% | |
| ! | ACTGAGGGTGTGCGTGTGTG+TGG | - | chr5_4:29409516-29409535 | None:intergenic | 60.0% |
| ! | ACTGAGGGTGTGCGTGTGTG+TGG | - | chr5_4:29409516-29409535 | None:intergenic | 60.0% |
| CACGCACACCCTCAGTCTCC+AGG | + | chr5_4:29409520-29409539 | Msa0847420:intron | 65.0% | |
| CACGCACACCCTCAGTCTCC+AGG | + | chr5_4:29409520-29409539 | Msa0847420:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 29408814 | 29410665 | 29408814 | ID=Msa0847420;Name=Msa0847420 |
| chr5_4 | mRNA | 29408814 | 29410665 | 29408814 | ID=Msa0847420-mRNA-1;Parent=Msa0847420;Name=Msa0847420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.85|1|1|7|0|172 |
| chr5_4 | exon | 29408814 | 29408909 | 29408814 | ID=Msa0847420-mRNA-1:exon:10909;Parent=Msa0847420-mRNA-1 |
| chr5_4 | exon | 29409162 | 29409293 | 29409162 | ID=Msa0847420-mRNA-1:exon:10910;Parent=Msa0847420-mRNA-1 |
| chr5_4 | exon | 29409759 | 29409858 | 29409759 | ID=Msa0847420-mRNA-1:exon:10911;Parent=Msa0847420-mRNA-1 |
| chr5_4 | exon | 29410022 | 29410070 | 29410022 | ID=Msa0847420-mRNA-1:exon:10912;Parent=Msa0847420-mRNA-1 |
| chr5_4 | exon | 29410285 | 29410360 | 29410285 | ID=Msa0847420-mRNA-1:exon:10913;Parent=Msa0847420-mRNA-1 |
| chr5_4 | exon | 29410504 | 29410563 | 29410504 | ID=Msa0847420-mRNA-1:exon:10914;Parent=Msa0847420-mRNA-1 |
| chr5_4 | exon | 29410660 | 29410665 | 29410660 | ID=Msa0847420-mRNA-1:exon:10915;Parent=Msa0847420-mRNA-1 |
| chr5_4 | CDS | 29408814 | 29408909 | 29408814 | ID=Msa0847420-mRNA-1:cds;Parent=Msa0847420-mRNA-1 |
| chr5_4 | CDS | 29409162 | 29409293 | 29409162 | ID=Msa0847420-mRNA-1:cds;Parent=Msa0847420-mRNA-1 |
| chr5_4 | CDS | 29409759 | 29409858 | 29409759 | ID=Msa0847420-mRNA-1:cds;Parent=Msa0847420-mRNA-1 |
| chr5_4 | CDS | 29410022 | 29410070 | 29410022 | ID=Msa0847420-mRNA-1:cds;Parent=Msa0847420-mRNA-1 |
| chr5_4 | CDS | 29410285 | 29410360 | 29410285 | ID=Msa0847420-mRNA-1:cds;Parent=Msa0847420-mRNA-1 |
| chr5_4 | CDS | 29410504 | 29410563 | 29410504 | ID=Msa0847420-mRNA-1:cds;Parent=Msa0847420-mRNA-1 |
| chr5_4 | CDS | 29410660 | 29410665 | 29410660 | ID=Msa0847420-mRNA-1:cds;Parent=Msa0847420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
