Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847460 | GAY34816.1 | 57.895 | 95 | 40 | 0 | 1 | 95 | 21 | 115 | 9.97e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847460 | sp|Q6F388|HFA2E_ORYSJ | 33.333 | 117 | 71 | 1 | 1 | 117 | 46 | 155 | 2.05e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847460 | A0A2H5N3L5 | 57.895 | 95 | 40 | 0 | 1 | 95 | 21 | 115 | 4.76e-28 | 115 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0847460 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847460 | MtrunA17_Chr2g0284481 | 38.194 | 144 | 47 | 2 | 1 | 102 | 23 | 166 | 3.18e-22 | 89.7 |
| Msa0847460 | MtrunA17_Chr5g0402291 | 41.000 | 100 | 46 | 2 | 1 | 100 | 17 | 103 | 2.88e-18 | 78.2 |
| Msa0847460 | MtrunA17_Chr8g0392001 | 49.412 | 85 | 35 | 2 | 1 | 84 | 30 | 107 | 1.86e-16 | 73.9 |
| Msa0847460 | MtrunA17_Chr4g0039891 | 40.659 | 91 | 47 | 1 | 1 | 91 | 20 | 103 | 2.74e-16 | 73.6 |
| Msa0847460 | MtrunA17_Chr4g0071051 | 40.000 | 95 | 50 | 1 | 1 | 95 | 109 | 196 | 5.04e-16 | 72.8 |
| Msa0847460 | MtrunA17_Chr5g0410881 | 57.692 | 52 | 22 | 0 | 1 | 52 | 40 | 91 | 5.54e-16 | 72.8 |
| Msa0847460 | MtrunA17_Chr8g0378061 | 42.857 | 84 | 41 | 1 | 1 | 84 | 30 | 106 | 6.42e-16 | 72.8 |
| Msa0847460 | MtrunA17_Chr6g0467041 | 40.230 | 87 | 45 | 1 | 1 | 87 | 30 | 109 | 1.11e-15 | 71.6 |
| Msa0847460 | MtrunA17_Chr8g0375041 | 50.943 | 53 | 26 | 0 | 1 | 53 | 17 | 69 | 1.53e-15 | 70.5 |
| Msa0847460 | MtrunA17_Chr3g0134031 | 35.714 | 98 | 56 | 1 | 1 | 98 | 32 | 122 | 3.83e-15 | 70.1 |
| Msa0847460 | MtrunA17_Chr7g0260331 | 38.889 | 90 | 48 | 1 | 1 | 90 | 57 | 139 | 7.88e-15 | 69.3 |
| Msa0847460 | MtrunA17_Chr5g0397881 | 52.830 | 53 | 25 | 0 | 1 | 53 | 32 | 84 | 8.55e-15 | 69.3 |
| Msa0847460 | MtrunA17_Chr1g0185131 | 33.036 | 112 | 68 | 1 | 1 | 112 | 40 | 144 | 1.43e-14 | 68.6 |
| Msa0847460 | MtrunA17_Chr5g0441531 | 55.769 | 52 | 23 | 0 | 1 | 52 | 33 | 84 | 1.72e-14 | 67.4 |
| Msa0847460 | MtrunA17_Chr2g0330821 | 41.667 | 84 | 42 | 1 | 1 | 84 | 87 | 163 | 1.85e-14 | 68.2 |
| Msa0847460 | MtrunA17_Chr1g0179321 | 51.923 | 52 | 25 | 0 | 1 | 52 | 57 | 108 | 1.97e-14 | 64.3 |
| Msa0847460 | MtrunA17_Chr8g0379701 | 57.692 | 52 | 22 | 0 | 1 | 52 | 20 | 71 | 3.89e-14 | 67.4 |
| Msa0847460 | MtrunA17_Chr1g0203601 | 55.769 | 52 | 23 | 0 | 1 | 52 | 26 | 77 | 3.93e-14 | 67.0 |
| Msa0847460 | MtrunA17_Chr4g0023771 | 57.143 | 49 | 21 | 0 | 2 | 50 | 24 | 72 | 6.06e-14 | 63.2 |
| Msa0847460 | MtrunA17_Chr3g0135831 | 52.830 | 53 | 25 | 0 | 1 | 53 | 54 | 106 | 1.93e-13 | 65.5 |
| Msa0847460 | MtrunA17_Chr2g0301521 | 75.556 | 45 | 9 | 1 | 53 | 95 | 17 | 61 | 2.06e-13 | 63.2 |
| Msa0847460 | MtrunA17_Chr7g0257331 | 49.057 | 53 | 27 | 0 | 1 | 53 | 30 | 82 | 2.25e-13 | 64.3 |
| Msa0847460 | MtrunA17_Chr6g0472421 | 53.846 | 52 | 24 | 0 | 1 | 52 | 41 | 92 | 2.79e-13 | 64.7 |
| Msa0847460 | MtrunA17_Chr1g0204741 | 38.824 | 85 | 46 | 2 | 1 | 80 | 48 | 131 | 1.18e-11 | 60.1 |
| Msa0847460 | MtrunA17_Chr6g0485571 | 47.170 | 53 | 28 | 0 | 1 | 53 | 19 | 71 | 1.59e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847460 | AT4G13980.1 | 45.238 | 84 | 39 | 1 | 1 | 84 | 31 | 107 | 4.48e-17 | 76.3 |
| Msa0847460 | AT4G17750.1 | 38.835 | 103 | 50 | 2 | 1 | 103 | 60 | 149 | 1.42e-16 | 74.7 |
| Msa0847460 | AT5G62020.1 | 61.538 | 52 | 20 | 0 | 1 | 52 | 31 | 82 | 2.21e-16 | 73.6 |
| Msa0847460 | AT1G32330.2 | 41.758 | 91 | 46 | 1 | 1 | 91 | 45 | 128 | 1.63e-15 | 72.0 |
| Msa0847460 | AT1G32330.1 | 41.758 | 91 | 46 | 1 | 1 | 91 | 45 | 128 | 1.75e-15 | 71.6 |
| Msa0847460 | AT5G54070.1 | 50.943 | 53 | 26 | 0 | 1 | 53 | 79 | 131 | 5.01e-15 | 70.1 |
| Msa0847460 | AT3G02990.1 | 57.692 | 52 | 22 | 0 | 1 | 52 | 31 | 82 | 5.23e-15 | 70.5 |
| Msa0847460 | AT4G11660.1 | 54.717 | 53 | 24 | 0 | 1 | 53 | 67 | 119 | 5.29e-15 | 70.1 |
| Msa0847460 | AT2G26150.1 | 35.345 | 116 | 57 | 3 | 1 | 111 | 52 | 154 | 6.16e-15 | 69.7 |
| Msa0847460 | AT2G26150.4 | 35.345 | 116 | 57 | 3 | 1 | 111 | 52 | 154 | 6.16e-15 | 69.7 |
| Msa0847460 | AT1G46264.1 | 38.462 | 91 | 49 | 1 | 1 | 91 | 42 | 125 | 8.66e-15 | 69.3 |
| Msa0847460 | AT4G36990.1 | 52.830 | 53 | 25 | 0 | 1 | 53 | 22 | 74 | 1.48e-14 | 68.6 |
| Msa0847460 | AT5G16820.1 | 53.846 | 52 | 24 | 0 | 1 | 52 | 35 | 86 | 4.17e-14 | 67.8 |
| Msa0847460 | AT5G16820.2 | 53.846 | 52 | 24 | 0 | 1 | 52 | 35 | 86 | 4.17e-14 | 67.8 |
| Msa0847460 | AT5G45710.3 | 34.677 | 124 | 40 | 2 | 12 | 95 | 32 | 154 | 8.79e-14 | 66.6 |
| Msa0847460 | AT5G45710.1 | 34.677 | 124 | 40 | 2 | 12 | 95 | 32 | 154 | 8.79e-14 | 66.6 |
| Msa0847460 | AT3G24520.1 | 38.095 | 84 | 45 | 1 | 1 | 84 | 25 | 101 | 1.35e-13 | 66.2 |
| Msa0847460 | AT5G03720.2 | 31.933 | 119 | 63 | 3 | 1 | 119 | 63 | 163 | 3.09e-13 | 65.5 |
| Msa0847460 | AT5G03720.1 | 31.933 | 119 | 63 | 3 | 1 | 119 | 63 | 163 | 3.09e-13 | 65.5 |
| Msa0847460 | AT3G22830.1 | 39.286 | 84 | 44 | 1 | 1 | 84 | 69 | 145 | 8.12e-13 | 63.9 |
| Msa0847460 | AT1G67970.1 | 56.604 | 53 | 22 | 1 | 1 | 52 | 27 | 79 | 1.30e-12 | 63.5 |
| Msa0847460 | AT5G43840.1 | 34.259 | 108 | 64 | 1 | 1 | 108 | 27 | 127 | 3.10e-12 | 62.0 |
| Msa0847460 | AT2G41690.1 | 50.943 | 53 | 26 | 0 | 1 | 53 | 48 | 100 | 4.04e-12 | 61.2 |
| Msa0847460 | AT3G51910.1 | 49.057 | 53 | 27 | 0 | 1 | 53 | 37 | 89 | 2.35e-11 | 59.3 |
Find 19 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTATAGCGTTCAAATTC+TGG | 0.178752 | 5_4:+29524946 | None:intergenic |
| ACAAGCATGGGCCTTGAATT+TGG | 0.207373 | 5_4:+29524799 | None:intergenic |
| TAACTGATTCCATTATTTCC+TGG | 0.361860 | 5_4:-29526278 | Msa0847460:CDS |
| GTTGGCACTCCAGGAAATAA+TGG | 0.377697 | 5_4:+29526269 | None:intergenic |
| TCTTCTACAGTTGGCACTCC+AGG | 0.453512 | 5_4:+29526260 | None:intergenic |
| AAATTCACTAACCAAATTCA+AGG | 0.460850 | 5_4:-29524810 | Msa0847460:CDS |
| AGGAACAAGAGAAGAAAAGA+AGG | 0.466768 | 5_4:-29524875 | Msa0847460:CDS |
| AATGATGAATCTTCTACAGT+TGG | 0.546426 | 5_4:+29526251 | None:intergenic |
| TCTTCTTGAACTTCAAACAA+AGG | 0.549966 | 5_4:-29524895 | Msa0847460:CDS |
| TACGTCTTGTACAACAAGCA+TGG | 0.554964 | 5_4:+29524786 | None:intergenic |
| GAATTCATTCGATCTTGCAA+AGG | 0.564573 | 5_4:-29526226 | Msa0847460:CDS |
| AGAAGGAGTGTATCATGTGA+AGG | 0.601166 | 5_4:-29524858 | Msa0847460:CDS |
| ACGTCTTGTACAACAAGCAT+GGG | 0.611089 | 5_4:+29524787 | None:intergenic |
| CATTCTTTGTAGAATACACA+TGG | 0.619024 | 5_4:-29524999 | Msa0847460:intron |
| TTGTAGAATACACATGGACA+AGG | 0.629978 | 5_4:-29524993 | Msa0847460:intron |
| TGTAGAATACACATGGACAA+GGG | 0.635627 | 5_4:-29524992 | Msa0847460:intron |
| GTAGAATACACATGGACAAG+GGG | 0.639314 | 5_4:-29524991 | Msa0847460:intron |
| TTATTATGCTTAAAATATCG+AGG | 0.653247 | 5_4:+29526195 | None:intergenic |
| TGAAAATCTTAAACGTGACA+AGG | 0.667756 | 5_4:-29524925 | Msa0847460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTGATATTTTTAATAA+AGG | - | chr5_4:29525370-29525389 | Msa0847460:intron | 10.0% |
| !!! | TTTGTTGATATTTTTAATAA+AGG | - | chr5_4:29525370-29525389 | Msa0847460:intron | 10.0% |
| !! | AGAAATTAAAAAACCTTAAT+GGG | + | chr5_4:29525096-29525115 | None:intergenic | 15.0% |
| !! | AAGAAATTAAAAAACCTTAA+TGG | + | chr5_4:29525097-29525116 | None:intergenic | 15.0% |
| !!! | TATGATTTTTAGTTTGATTA+AGG | - | chr5_4:29525126-29525145 | Msa0847460:intron | 15.0% |
| !! | TCAAATAAATCAATTAAAAC+AGG | + | chr5_4:29525198-29525217 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGACTTGTTTA+TGG | - | chr5_4:29525631-29525650 | Msa0847460:intron | 15.0% |
| !!! | AAAAGTTGATTCAAAAAAAT+GGG | - | chr5_4:29525980-29525999 | Msa0847460:intron | 15.0% |
| !! | AGAAATTAAAAAACCTTAAT+GGG | + | chr5_4:29525096-29525115 | None:intergenic | 15.0% |
| !! | AAGAAATTAAAAAACCTTAA+TGG | + | chr5_4:29525097-29525116 | None:intergenic | 15.0% |
| !!! | TATGATTTTTAGTTTGATTA+AGG | - | chr5_4:29525126-29525145 | Msa0847460:intron | 15.0% |
| !! | TCAAATAAATCAATTAAAAC+AGG | + | chr5_4:29525198-29525217 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGACTTGTTTA+TGG | - | chr5_4:29525631-29525650 | Msa0847460:intron | 15.0% |
| !!! | AAAAGTTGATTCAAAAAAAT+GGG | - | chr5_4:29525980-29525999 | Msa0847460:intron | 15.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | + | chr5_4:29524887-29524906 | None:intergenic | 20.0% |
| !! | GAAATTAAAAAACCTTAATG+GGG | + | chr5_4:29525095-29525114 | None:intergenic | 20.0% |
| !! | TTTAGGAATAATGATTGTTA+TGG | - | chr5_4:29525150-29525169 | Msa0847460:intron | 20.0% |
| !! | ATTAAGTTATTTAACCAATC+AGG | - | chr5_4:29525338-29525357 | Msa0847460:intron | 20.0% |
| !! | AAAAAACATGAACTATGTTA+TGG | - | chr5_4:29525532-29525551 | Msa0847460:intron | 20.0% |
| !! | CTAAAGAACAATTTATTGTT+CGG | + | chr5_4:29525879-29525898 | None:intergenic | 20.0% |
| !! | AGCAATCAATAAATCTTAAT+TGG | + | chr5_4:29525921-29525940 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGATTCAAAAAAA+TGG | - | chr5_4:29525979-29525998 | Msa0847460:intron | 20.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | + | chr5_4:29524887-29524906 | None:intergenic | 20.0% |
| !! | GAAATTAAAAAACCTTAATG+GGG | + | chr5_4:29525095-29525114 | None:intergenic | 20.0% |
| !! | TTTAGGAATAATGATTGTTA+TGG | - | chr5_4:29525150-29525169 | Msa0847460:intron | 20.0% |
| !! | ATTAAGTTATTTAACCAATC+AGG | - | chr5_4:29525338-29525357 | Msa0847460:intron | 20.0% |
| !! | AAAAAACATGAACTATGTTA+TGG | - | chr5_4:29525532-29525551 | Msa0847460:intron | 20.0% |
| !! | CTAAAGAACAATTTATTGTT+CGG | + | chr5_4:29525879-29525898 | None:intergenic | 20.0% |
| !! | AGCAATCAATAAATCTTAAT+TGG | + | chr5_4:29525921-29525940 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGATTCAAAAAAA+TGG | - | chr5_4:29525979-29525998 | Msa0847460:intron | 20.0% |
| !! | TTTAATGTACTTCGTTTTCT+TGG | - | chr5_4:29524950-29524969 | Msa0847460:CDS | 25.0% |
| ! | ACATTAAAAAAACCTCAATG+GGG | + | chr5_4:29525050-29525069 | None:intergenic | 25.0% |
| ! | CACATTAAAAAAACCTCAAT+GGG | + | chr5_4:29525051-29525070 | None:intergenic | 25.0% |
| ! | ACACATTAAAAAAACCTCAA+TGG | + | chr5_4:29525052-29525071 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATCACCCCATTA+AGG | - | chr5_4:29525080-29525099 | Msa0847460:intron | 25.0% |
| !!! | TTTAGTTTGATTAAGGCTTT+AGG | - | chr5_4:29525133-29525152 | Msa0847460:intron | 25.0% |
| ! | GAATAATGATTGTTATGGAT+TGG | - | chr5_4:29525155-29525174 | Msa0847460:intron | 25.0% |
| ! | AAAATATCAACAAAAGAGCA+AGG | + | chr5_4:29525364-29525383 | None:intergenic | 25.0% |
| !! | ATGAACTATGTTATGGATTT+TGG | - | chr5_4:29525539-29525558 | Msa0847460:intron | 25.0% |
| !!! | TTATGGATTTTGGTTCAATT+AGG | - | chr5_4:29525549-29525568 | Msa0847460:intron | 25.0% |
| !! | GGATTTTGCAAAATATCATA+TGG | - | chr5_4:29525570-29525589 | Msa0847460:intron | 25.0% |
| ! | ACTCAAAAACAAGTTAACAA+CGG | + | chr5_4:29525606-29525625 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | - | chr5_4:29525715-29525734 | Msa0847460:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | + | chr5_4:29525725-29525744 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | - | chr5_4:29525928-29525947 | Msa0847460:intron | 25.0% |
| !! | TATGGTTTGCAATTTGAATA+GGG | - | chr5_4:29525951-29525970 | Msa0847460:intron | 25.0% |
| !! | GCAAACGATAATTTTGTAAA+AGG | - | chr5_4:29526008-29526027 | Msa0847460:intron | 25.0% |
| ! | AAATTCACTAACCAAATTCA+AGG | - | chr5_4:29526269-29526288 | Msa0847460:CDS | 25.0% |
| !! | TTTAATGTACTTCGTTTTCT+TGG | - | chr5_4:29524950-29524969 | Msa0847460:CDS | 25.0% |
| ! | ACATTAAAAAAACCTCAATG+GGG | + | chr5_4:29525050-29525069 | None:intergenic | 25.0% |
| ! | CACATTAAAAAAACCTCAAT+GGG | + | chr5_4:29525051-29525070 | None:intergenic | 25.0% |
| ! | ACACATTAAAAAAACCTCAA+TGG | + | chr5_4:29525052-29525071 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATCACCCCATTA+AGG | - | chr5_4:29525080-29525099 | Msa0847460:intron | 25.0% |
| !!! | TTTAGTTTGATTAAGGCTTT+AGG | - | chr5_4:29525133-29525152 | Msa0847460:intron | 25.0% |
| ! | GAATAATGATTGTTATGGAT+TGG | - | chr5_4:29525155-29525174 | Msa0847460:intron | 25.0% |
| ! | AAAATATCAACAAAAGAGCA+AGG | + | chr5_4:29525364-29525383 | None:intergenic | 25.0% |
| !! | ATGAACTATGTTATGGATTT+TGG | - | chr5_4:29525539-29525558 | Msa0847460:intron | 25.0% |
| !!! | TTATGGATTTTGGTTCAATT+AGG | - | chr5_4:29525549-29525568 | Msa0847460:intron | 25.0% |
| !! | GGATTTTGCAAAATATCATA+TGG | - | chr5_4:29525570-29525589 | Msa0847460:intron | 25.0% |
| ! | ACTCAAAAACAAGTTAACAA+CGG | + | chr5_4:29525606-29525625 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | - | chr5_4:29525715-29525734 | Msa0847460:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | + | chr5_4:29525725-29525744 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | - | chr5_4:29525928-29525947 | Msa0847460:intron | 25.0% |
| !! | TATGGTTTGCAATTTGAATA+GGG | - | chr5_4:29525951-29525970 | Msa0847460:intron | 25.0% |
| !! | GCAAACGATAATTTTGTAAA+AGG | - | chr5_4:29526008-29526027 | Msa0847460:intron | 25.0% |
| ! | AAATTCACTAACCAAATTCA+AGG | - | chr5_4:29526269-29526288 | Msa0847460:CDS | 25.0% |
| ! | TAACTGATTCCATTATTTCC+TGG | - | chr5_4:29524801-29524820 | Msa0847460:CDS | 30.0% |
| AATGATGAATCTTCTACAGT+TGG | + | chr5_4:29524831-29524850 | None:intergenic | 30.0% | |
| !!! | TTTTTTTAATCACCCCATTG+AGG | - | chr5_4:29525035-29525054 | Msa0847460:intron | 30.0% |
| ! | TTGAAATGTGTTACTCACAT+GGG | - | chr5_4:29525405-29525424 | Msa0847460:intron | 30.0% |
| TCAAACCTGAAACATTAAGA+GGG | + | chr5_4:29525469-29525488 | None:intergenic | 30.0% | |
| CCAAACTAGCAAACAAAAAT+TGG | + | chr5_4:29525504-29525523 | None:intergenic | 30.0% | |
| !! | CCAATTTTTGTTTGCTAGTT+TGG | - | chr5_4:29525501-29525520 | Msa0847460:intron | 30.0% |
| ! | GTATGGTTTGCAATTTGAAT+AGG | - | chr5_4:29525950-29525969 | Msa0847460:intron | 30.0% |
| TGGATATTCTTCATCAGATA+TGG | + | chr5_4:29526038-29526057 | None:intergenic | 30.0% | |
| ATCTGATGAAGAATATCCAT+AGG | - | chr5_4:29526039-29526058 | Msa0847460:intron | 30.0% | |
| CATGTGTATTCTACAAAGAA+TGG | + | chr5_4:29526082-29526101 | None:intergenic | 30.0% | |
| CATTCTTTGTAGAATACACA+TGG | - | chr5_4:29526080-29526099 | Msa0847460:intron | 30.0% | |
| CAATTATAGCGTTCAAATTC+TGG | + | chr5_4:29526136-29526155 | None:intergenic | 30.0% | |
| TGAAAATCTTAAACGTGACA+AGG | - | chr5_4:29526154-29526173 | Msa0847460:intron | 30.0% | |
| TCTTCTTGAACTTCAAACAA+AGG | - | chr5_4:29526184-29526203 | Msa0847460:CDS | 30.0% | |
| ! | TAACTGATTCCATTATTTCC+TGG | - | chr5_4:29524801-29524820 | Msa0847460:CDS | 30.0% |
| AATGATGAATCTTCTACAGT+TGG | + | chr5_4:29524831-29524850 | None:intergenic | 30.0% | |
| !!! | TTTTTTTAATCACCCCATTG+AGG | - | chr5_4:29525035-29525054 | Msa0847460:intron | 30.0% |
| ! | TTGAAATGTGTTACTCACAT+GGG | - | chr5_4:29525405-29525424 | Msa0847460:intron | 30.0% |
| TCAAACCTGAAACATTAAGA+GGG | + | chr5_4:29525469-29525488 | None:intergenic | 30.0% | |
| CCAAACTAGCAAACAAAAAT+TGG | + | chr5_4:29525504-29525523 | None:intergenic | 30.0% | |
| !! | CCAATTTTTGTTTGCTAGTT+TGG | - | chr5_4:29525501-29525520 | Msa0847460:intron | 30.0% |
| ! | GTATGGTTTGCAATTTGAAT+AGG | - | chr5_4:29525950-29525969 | Msa0847460:intron | 30.0% |
| TGGATATTCTTCATCAGATA+TGG | + | chr5_4:29526038-29526057 | None:intergenic | 30.0% | |
| ATCTGATGAAGAATATCCAT+AGG | - | chr5_4:29526039-29526058 | Msa0847460:intron | 30.0% | |
| CATGTGTATTCTACAAAGAA+TGG | + | chr5_4:29526082-29526101 | None:intergenic | 30.0% | |
| CATTCTTTGTAGAATACACA+TGG | - | chr5_4:29526080-29526099 | Msa0847460:intron | 30.0% | |
| CAATTATAGCGTTCAAATTC+TGG | + | chr5_4:29526136-29526155 | None:intergenic | 30.0% | |
| TGAAAATCTTAAACGTGACA+AGG | - | chr5_4:29526154-29526173 | Msa0847460:intron | 30.0% | |
| TCTTCTTGAACTTCAAACAA+AGG | - | chr5_4:29526184-29526203 | Msa0847460:CDS | 30.0% | |
| GAATTCATTCGATCTTGCAA+AGG | - | chr5_4:29524853-29524872 | Msa0847460:CDS | 35.0% | |
| ! | CTTGAAATGTGTTACTCACA+TGG | - | chr5_4:29525404-29525423 | Msa0847460:intron | 35.0% |
| TTGGGCTAATGATGTTAGTT+TGG | - | chr5_4:29525428-29525447 | Msa0847460:intron | 35.0% | |
| ! | TGGGCTAATGATGTTAGTTT+GGG | - | chr5_4:29525429-29525448 | Msa0847460:intron | 35.0% |
| ATTAAGAGGGGAATACTTCA+AGG | + | chr5_4:29525456-29525475 | None:intergenic | 35.0% | |
| TATTCCCCTCTTAATGTTTC+AGG | - | chr5_4:29525461-29525480 | Msa0847460:intron | 35.0% | |
| CAAACCTGAAACATTAAGAG+GGG | + | chr5_4:29525468-29525487 | None:intergenic | 35.0% | |
| GTCAAACCTGAAACATTAAG+AGG | + | chr5_4:29525470-29525489 | None:intergenic | 35.0% | |
| TGATTGCTTGAATTGTGGTA+TGG | - | chr5_4:29525933-29525952 | Msa0847460:intron | 35.0% | |
| TTGTAGAATACACATGGACA+AGG | - | chr5_4:29526086-29526105 | Msa0847460:intron | 35.0% | |
| TGTAGAATACACATGGACAA+GGG | - | chr5_4:29526087-29526106 | Msa0847460:intron | 35.0% | |
| AGGAACAAGAGAAGAAAAGA+AGG | - | chr5_4:29526204-29526223 | Msa0847460:CDS | 35.0% | |
| GAATTCATTCGATCTTGCAA+AGG | - | chr5_4:29524853-29524872 | Msa0847460:CDS | 35.0% | |
| ! | CTTGAAATGTGTTACTCACA+TGG | - | chr5_4:29525404-29525423 | Msa0847460:intron | 35.0% |
| TTGGGCTAATGATGTTAGTT+TGG | - | chr5_4:29525428-29525447 | Msa0847460:intron | 35.0% | |
| ! | TGGGCTAATGATGTTAGTTT+GGG | - | chr5_4:29525429-29525448 | Msa0847460:intron | 35.0% |
| ATTAAGAGGGGAATACTTCA+AGG | + | chr5_4:29525456-29525475 | None:intergenic | 35.0% | |
| TATTCCCCTCTTAATGTTTC+AGG | - | chr5_4:29525461-29525480 | Msa0847460:intron | 35.0% | |
| CAAACCTGAAACATTAAGAG+GGG | + | chr5_4:29525468-29525487 | None:intergenic | 35.0% | |
| GTCAAACCTGAAACATTAAG+AGG | + | chr5_4:29525470-29525489 | None:intergenic | 35.0% | |
| TGATTGCTTGAATTGTGGTA+TGG | - | chr5_4:29525933-29525952 | Msa0847460:intron | 35.0% | |
| TTGTAGAATACACATGGACA+AGG | - | chr5_4:29526086-29526105 | Msa0847460:intron | 35.0% | |
| TGTAGAATACACATGGACAA+GGG | - | chr5_4:29526087-29526106 | Msa0847460:intron | 35.0% | |
| AGGAACAAGAGAAGAAAAGA+AGG | - | chr5_4:29526204-29526223 | Msa0847460:CDS | 35.0% | |
| ! | AATGTGTTACTCACATGGGT+TGG | - | chr5_4:29525409-29525428 | Msa0847460:intron | 40.0% |
| ! | ATGTGTTACTCACATGGGTT+GGG | - | chr5_4:29525410-29525429 | Msa0847460:intron | 40.0% |
| TACGAAAAGATTGCTGCCTA+TGG | + | chr5_4:29526058-29526077 | None:intergenic | 40.0% | |
| GTAGAATACACATGGACAAG+GGG | - | chr5_4:29526088-29526107 | Msa0847460:intron | 40.0% | |
| ! | AGAAGGAGTGTATCATGTGA+AGG | - | chr5_4:29526221-29526240 | Msa0847460:CDS | 40.0% |
| ACGTCTTGTACAACAAGCAT+GGG | + | chr5_4:29526295-29526314 | None:intergenic | 40.0% | |
| TACGTCTTGTACAACAAGCA+TGG | + | chr5_4:29526296-29526315 | None:intergenic | 40.0% | |
| ! | AATGTGTTACTCACATGGGT+TGG | - | chr5_4:29525409-29525428 | Msa0847460:intron | 40.0% |
| ! | ATGTGTTACTCACATGGGTT+GGG | - | chr5_4:29525410-29525429 | Msa0847460:intron | 40.0% |
| TACGAAAAGATTGCTGCCTA+TGG | + | chr5_4:29526058-29526077 | None:intergenic | 40.0% | |
| GTAGAATACACATGGACAAG+GGG | - | chr5_4:29526088-29526107 | Msa0847460:intron | 40.0% | |
| ! | AGAAGGAGTGTATCATGTGA+AGG | - | chr5_4:29526221-29526240 | Msa0847460:CDS | 40.0% |
| ACGTCTTGTACAACAAGCAT+GGG | + | chr5_4:29526295-29526314 | None:intergenic | 40.0% | |
| TACGTCTTGTACAACAAGCA+TGG | + | chr5_4:29526296-29526315 | None:intergenic | 40.0% | |
| GTTGGCACTCCAGGAAATAA+TGG | + | chr5_4:29524813-29524832 | None:intergenic | 45.0% | |
| ACAAAAGAGCAAGGCCTGAT+TGG | + | chr5_4:29525355-29525374 | None:intergenic | 45.0% | |
| ACAAGCATGGGCCTTGAATT+TGG | + | chr5_4:29526283-29526302 | None:intergenic | 45.0% | |
| GTTGGCACTCCAGGAAATAA+TGG | + | chr5_4:29524813-29524832 | None:intergenic | 45.0% | |
| ACAAAAGAGCAAGGCCTGAT+TGG | + | chr5_4:29525355-29525374 | None:intergenic | 45.0% | |
| ACAAGCATGGGCCTTGAATT+TGG | + | chr5_4:29526283-29526302 | None:intergenic | 45.0% | |
| TCTTCTACAGTTGGCACTCC+AGG | + | chr5_4:29524822-29524841 | None:intergenic | 50.0% | |
| TCTTCTACAGTTGGCACTCC+AGG | + | chr5_4:29524822-29524841 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 29524785 | 29526316 | 29524785 | ID=Msa0847460;Name=Msa0847460 |
| chr5_4 | mRNA | 29524785 | 29526316 | 29524785 | ID=Msa0847460-mRNA-1;Parent=Msa0847460;Name=Msa0847460-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|2|0|126 |
| chr5_4 | exon | 29526161 | 29526316 | 29526161 | ID=Msa0847460-mRNA-1:exon:10933;Parent=Msa0847460-mRNA-1 |
| chr5_4 | exon | 29524785 | 29525009 | 29524785 | ID=Msa0847460-mRNA-1:exon:10932;Parent=Msa0847460-mRNA-1 |
| chr5_4 | CDS | 29526161 | 29526316 | 29526161 | ID=Msa0847460-mRNA-1:cds;Parent=Msa0847460-mRNA-1 |
| chr5_4 | CDS | 29524785 | 29525009 | 29524785 | ID=Msa0847460-mRNA-1:cds;Parent=Msa0847460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
