Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847710 | PHT83887.1 | 78.846 | 52 | 11 | 0 | 12 | 63 | 3 | 54 | 9.60e-22 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847710 | sp|Q5NBM8|CSA_ORYSJ | 82.979 | 47 | 8 | 0 | 17 | 63 | 84 | 130 | 4.03e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847710 | A0A2G2ZPL7 | 78.846 | 52 | 11 | 0 | 12 | 63 | 3 | 54 | 4.59e-22 | 94.7 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0847710 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847710 | MtrunA17_Chr3g0125801 | 56.701 | 97 | 8 | 1 | 1 | 63 | 1 | 97 | 1.95e-24 | 92.0 |
| Msa0847710 | MtrunA17_Chr5g0417621 | 82.979 | 47 | 8 | 0 | 17 | 63 | 169 | 215 | 3.18e-23 | 90.1 |
| Msa0847710 | MtrunA17_Chr4g0042501 | 80.851 | 47 | 9 | 0 | 17 | 63 | 140 | 186 | 1.91e-22 | 88.2 |
| Msa0847710 | MtrunA17_Chr6g0480581 | 74.468 | 47 | 12 | 0 | 17 | 63 | 39 | 85 | 8.06e-22 | 84.0 |
| Msa0847710 | MtrunA17_Chr7g0254261 | 77.551 | 49 | 11 | 0 | 15 | 63 | 122 | 170 | 7.74e-19 | 77.8 |
| Msa0847710 | MtrunA17_Chr6g0460671 | 63.830 | 47 | 17 | 0 | 17 | 63 | 134 | 180 | 3.37e-16 | 70.5 |
| Msa0847710 | MtrunA17_Chr4g0008551 | 60.870 | 46 | 18 | 0 | 17 | 62 | 73 | 118 | 1.50e-15 | 68.6 |
| Msa0847710 | MtrunA17_Chr3g0133601 | 58.696 | 46 | 19 | 0 | 17 | 62 | 72 | 117 | 1.11e-13 | 62.4 |
| Msa0847710 | MtrunA17_Chr5g0401731 | 52.000 | 50 | 24 | 0 | 15 | 64 | 48 | 97 | 7.40e-13 | 60.8 |
| Msa0847710 | MtrunA17_Chr6g0460661 | 53.191 | 47 | 22 | 0 | 17 | 63 | 51 | 97 | 8.74e-13 | 58.9 |
| Msa0847710 | MtrunA17_Chr4g0053431 | 54.167 | 48 | 22 | 0 | 17 | 64 | 40 | 87 | 3.87e-12 | 58.5 |
| Msa0847710 | MtrunA17_Chr5g0437321 | 50.000 | 48 | 24 | 0 | 15 | 62 | 52 | 99 | 8.42e-12 | 57.8 |
| Msa0847710 | MtrunA17_Chr6g0454921 | 54.348 | 46 | 21 | 0 | 17 | 62 | 50 | 95 | 2.11e-11 | 56.2 |
| Msa0847710 | MtrunA17_Chr1g0157731 | 52.174 | 46 | 22 | 0 | 17 | 62 | 126 | 171 | 9.48e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847710 | AT1G69560.1 | 80.851 | 47 | 9 | 0 | 17 | 63 | 142 | 188 | 8.68e-23 | 88.6 |
| Msa0847710 | AT1G69560.2 | 80.851 | 47 | 9 | 0 | 17 | 63 | 158 | 204 | 1.15e-22 | 88.2 |
| Msa0847710 | AT1G26780.1 | 80.851 | 47 | 9 | 0 | 17 | 63 | 133 | 179 | 1.34e-22 | 87.4 |
| Msa0847710 | AT1G26780.2 | 80.851 | 47 | 9 | 0 | 17 | 63 | 133 | 179 | 3.06e-22 | 87.4 |
| Msa0847710 | AT5G17800.1 | 82.979 | 47 | 8 | 0 | 17 | 63 | 128 | 174 | 4.30e-22 | 86.7 |
| Msa0847710 | AT3G29020.1 | 77.083 | 48 | 11 | 0 | 17 | 64 | 100 | 147 | 5.50e-22 | 84.7 |
| Msa0847710 | AT1G17950.1 | 70.588 | 51 | 15 | 0 | 13 | 63 | 36 | 86 | 7.18e-22 | 84.7 |
| Msa0847710 | AT3G29020.2 | 78.723 | 47 | 10 | 0 | 17 | 63 | 102 | 148 | 9.57e-22 | 85.5 |
| Msa0847710 | AT4G33450.1 | 76.596 | 47 | 11 | 0 | 17 | 63 | 54 | 100 | 1.64e-20 | 81.3 |
| Msa0847710 | AT1G73410.1 | 78.723 | 47 | 10 | 0 | 17 | 63 | 41 | 87 | 6.56e-19 | 77.0 |
| Msa0847710 | AT1G73410.2 | 78.723 | 47 | 10 | 0 | 17 | 63 | 41 | 87 | 1.20e-18 | 75.5 |
| Msa0847710 | AT5G39700.1 | 67.391 | 46 | 15 | 0 | 19 | 64 | 93 | 138 | 5.18e-17 | 70.9 |
| Msa0847710 | AT3G55730.1 | 56.250 | 48 | 21 | 0 | 17 | 64 | 91 | 138 | 7.56e-15 | 67.0 |
| Msa0847710 | AT5G67300.1 | 58.333 | 48 | 20 | 0 | 15 | 62 | 39 | 86 | 1.05e-13 | 63.5 |
| Msa0847710 | AT2G39880.1 | 54.348 | 46 | 21 | 0 | 17 | 62 | 85 | 130 | 6.41e-13 | 61.6 |
| Msa0847710 | AT3G50060.1 | 50.877 | 57 | 28 | 0 | 6 | 62 | 30 | 86 | 8.49e-13 | 61.2 |
| Msa0847710 | AT3G09230.1 | 54.348 | 46 | 21 | 0 | 17 | 62 | 90 | 135 | 9.26e-13 | 61.2 |
| Msa0847710 | AT4G37260.1 | 54.167 | 48 | 22 | 0 | 15 | 62 | 46 | 93 | 1.21e-12 | 60.8 |
| Msa0847710 | AT2G23290.1 | 54.167 | 48 | 22 | 0 | 15 | 62 | 46 | 93 | 4.08e-12 | 59.3 |
| Msa0847710 | AT3G27920.1 | 51.111 | 45 | 22 | 0 | 17 | 61 | 52 | 96 | 6.23e-12 | 58.2 |
| Msa0847710 | AT5G14750.3 | 46.667 | 45 | 24 | 0 | 17 | 61 | 20 | 64 | 6.41e-11 | 54.7 |
| Msa0847710 | AT5G40330.1 | 46.667 | 45 | 24 | 0 | 17 | 61 | 50 | 94 | 8.40e-11 | 55.1 |
Find 21 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGTCTCTTGTTAATTCT+TGG | 0.233590 | 5_4:+30470443 | None:intergenic |
| CTTCTAGTTCTTCTGCCTCT+TGG | 0.328839 | 5_4:-30470339 | Msa0847710:exon |
| ATTCATTGAAATTTCATGTT+TGG | 0.331469 | 5_4:-30470230 | Msa0847710:three_prime_UTR |
| CTTCCGGCACATCGAATTTA+CGG | 0.341110 | 5_4:-30470395 | Msa0847710:CDS |
| ATCGAATTTACGGAAACAAA+TGG | 0.407108 | 5_4:-30470385 | Msa0847710:CDS |
| AATTTGTAGGGAAAAGTTGT+TGG | 0.475669 | 5_4:-30470490 | Msa0847710:intron |
| GGAAGAGGAGAGACTACTTC+CGG | 0.476529 | 5_4:-30470411 | Msa0847710:CDS |
| ACCTTTCGTAGAAGAGGAAG+AGG | 0.477449 | 5_4:-30470426 | Msa0847710:CDS |
| CAAGAGACCTTTCGTAGAAG+AGG | 0.477780 | 5_4:-30470432 | Msa0847710:CDS |
| TCACAGAAATTTCATTGAAG+AGG | 0.482809 | 5_4:-30470288 | Msa0847710:three_prime_UTR |
| GGAAAAGTTGTTGGTTGAGG+TGG | 0.494717 | 5_4:-30470481 | Msa0847710:CDS |
| TAGGGAAAAGTTGTTGGTTG+AGG | 0.497963 | 5_4:-30470484 | Msa0847710:CDS |
| ATGACCACGTTGACAACTCT+TGG | 0.498020 | 5_4:+30472524 | None:intergenic |
| CAAGAGGCAGAAGAACTAGA+AGG | 0.500906 | 5_4:+30470340 | None:intergenic |
| TCGAATTTACGGAAACAAAT+GGG | 0.502277 | 5_4:-30470384 | Msa0847710:CDS |
| TCCTCTTCCTCTTCTACGAA+AGG | 0.526064 | 5_4:+30470425 | None:intergenic |
| TTTCCGTAAATTCGATGTGC+CGG | 0.572473 | 5_4:+30470392 | None:intergenic |
| CACAGAAGTAAAATTTCAAG+AGG | 0.582941 | 5_4:-30470198 | Msa0847710:three_prime_UTR |
| AGAGGCAAGAGAGAACTTGA+AGG | 0.616417 | 5_4:-30470180 | Msa0847710:three_prime_UTR |
| CACAGAAGTAAAATTCCAAG+AGG | 0.636959 | 5_4:+30470324 | None:intergenic |
| GATACCAAGAGTTGTCAACG+TGG | 0.779603 | 5_4:-30472528 | Msa0847710:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTCTTTTTTATTAAAGTT+TGG | + | chr5_4:30470957-30470976 | None:intergenic | 10.0% |
| !!! | TATTATTATTCTTTTTTTAG+GGG | - | chr5_4:30471189-30471208 | Msa0847710:intron | 10.0% |
| !!! | TATTCTTTTTTATTAAAGTT+TGG | + | chr5_4:30470957-30470976 | None:intergenic | 10.0% |
| !!! | TATTATTATTCTTTTTTTAG+GGG | - | chr5_4:30471189-30471208 | Msa0847710:intron | 10.0% |
| !!! | TATTTACATTTTCAAATTCA+TGG | - | chr5_4:30470363-30470382 | Msa0847710:CDS | 15.0% |
| !!! | TTTTATTACTTTTTTTGTTG+CGG | + | chr5_4:30470994-30471013 | None:intergenic | 15.0% |
| !!! | ATTATTATTCTTTTTTTAGG+GGG | - | chr5_4:30471190-30471209 | Msa0847710:intron | 15.0% |
| !!! | TATTTACATTTTCAAATTCA+TGG | - | chr5_4:30470363-30470382 | Msa0847710:CDS | 15.0% |
| !!! | TTTTATTACTTTTTTTGTTG+CGG | + | chr5_4:30470994-30471013 | None:intergenic | 15.0% |
| !!! | ATTATTATTCTTTTTTTAGG+GGG | - | chr5_4:30471190-30471209 | Msa0847710:intron | 15.0% |
| !! | ATTTGAAAATGTAAATACAG+AGG | + | chr5_4:30470360-30470379 | None:intergenic | 20.0% |
| !! | ATGTAACTTTAATATTGCTA+TGG | - | chr5_4:30470532-30470551 | Msa0847710:intron | 20.0% |
| !! | TTTCATTCTTAAATGGAATT+AGG | - | chr5_4:30470587-30470606 | Msa0847710:intron | 20.0% |
| !!! | TTTTATTAAAGTTTGGAGAT+GGG | + | chr5_4:30470950-30470969 | None:intergenic | 20.0% |
| !!! | TTTTTATTAAAGTTTGGAGA+TGG | + | chr5_4:30470951-30470970 | None:intergenic | 20.0% |
| !! | AAAAACATGATCATAATGAA+CGG | - | chr5_4:30471098-30471117 | Msa0847710:intron | 20.0% |
| !!! | TTTATTACTTTTTTTGTTGC+GGG | + | chr5_4:30470995-30471014 | None:intergenic | 20.0% |
| !! | ATATTGCATAAAATTAGAGA+GGG | + | chr5_4:30471943-30471962 | None:intergenic | 20.0% |
| !! | TATATTGCATAAAATTAGAG+AGG | + | chr5_4:30471944-30471963 | None:intergenic | 20.0% |
| !! | TAAAAAAGTCATGTTTCATT+GGG | + | chr5_4:30471972-30471991 | None:intergenic | 20.0% |
| !!! | ATTTCTTCCTTTTAATTTGT+AGG | - | chr5_4:30472207-30472226 | Msa0847710:intron | 20.0% |
| !!! | TTTCTTCCTTTTAATTTGTA+GGG | - | chr5_4:30472208-30472227 | Msa0847710:intron | 20.0% |
| !! | ATTCATTGAAATTTCATGTT+TGG | - | chr5_4:30472480-30472499 | Msa0847710:intron | 20.0% |
| !! | ATTTGAAAATGTAAATACAG+AGG | + | chr5_4:30470360-30470379 | None:intergenic | 20.0% |
| !! | ATGTAACTTTAATATTGCTA+TGG | - | chr5_4:30470532-30470551 | Msa0847710:intron | 20.0% |
| !! | TTTCATTCTTAAATGGAATT+AGG | - | chr5_4:30470587-30470606 | Msa0847710:intron | 20.0% |
| !!! | TTTTATTAAAGTTTGGAGAT+GGG | + | chr5_4:30470950-30470969 | None:intergenic | 20.0% |
| !!! | TTTTTATTAAAGTTTGGAGA+TGG | + | chr5_4:30470951-30470970 | None:intergenic | 20.0% |
| !! | AAAAACATGATCATAATGAA+CGG | - | chr5_4:30471098-30471117 | Msa0847710:intron | 20.0% |
| !!! | TTTATTACTTTTTTTGTTGC+GGG | + | chr5_4:30470995-30471014 | None:intergenic | 20.0% |
| !! | ATATTGCATAAAATTAGAGA+GGG | + | chr5_4:30471943-30471962 | None:intergenic | 20.0% |
| !! | TATATTGCATAAAATTAGAG+AGG | + | chr5_4:30471944-30471963 | None:intergenic | 20.0% |
| !! | TAAAAAAGTCATGTTTCATT+GGG | + | chr5_4:30471972-30471991 | None:intergenic | 20.0% |
| !!! | ATTTCTTCCTTTTAATTTGT+AGG | - | chr5_4:30472207-30472226 | Msa0847710:intron | 20.0% |
| !!! | TTTCTTCCTTTTAATTTGTA+GGG | - | chr5_4:30472208-30472227 | Msa0847710:intron | 20.0% |
| !! | ATTCATTGAAATTTCATGTT+TGG | - | chr5_4:30472480-30472499 | Msa0847710:intron | 20.0% |
| ! | TGTCAAATTGTTGAACAATA+TGG | - | chr5_4:30470236-30470255 | Msa0847710:three_prime_UTR | 25.0% |
| !!! | ATATAGTTGATAGAAGTGTT+GGG | - | chr5_4:30470394-30470413 | Msa0847710:CDS | 25.0% |
| ! | AAAGCAATGTTATTGAGAAT+GGG | + | chr5_4:30470570-30470589 | None:intergenic | 25.0% |
| ! | ACATTGCTTTCATTCTTAAA+TGG | - | chr5_4:30470580-30470599 | Msa0847710:intron | 25.0% |
| !!! | ATTCCATTTATTGATTTCCT+TGG | - | chr5_4:30470695-30470714 | Msa0847710:intron | 25.0% |
| !!! | GAATTGTTTTTAGGTAATGT+TGG | + | chr5_4:30470812-30470831 | None:intergenic | 25.0% |
| ! | ACTTTCTTTATCACATCATA+TGG | - | chr5_4:30470921-30470940 | Msa0847710:intron | 25.0% |
| ! | CTTTCTTTATCACATCATAT+GGG | - | chr5_4:30470922-30470941 | Msa0847710:intron | 25.0% |
| ! | TTTATTAAAGTTTGGAGATG+GGG | + | chr5_4:30470949-30470968 | None:intergenic | 25.0% |
| ! | TTGAACATGATCATAATGAA+CGG | + | chr5_4:30471055-30471074 | None:intergenic | 25.0% |
| ! | CTTTCTTTATCACATCATAT+GGG | + | chr5_4:30470922-30470941 | None:intergenic | 25.0% |
| !! | TTTCATTGCAACTTTTTGAT+TGG | - | chr5_4:30471390-30471409 | Msa0847710:intron | 25.0% |
| ! | ATAAATGGAATTGCATATGA+AGG | - | chr5_4:30471454-30471473 | Msa0847710:intron | 25.0% |
| ! | CTAAAAAAGTCATGTTTCAT+TGG | + | chr5_4:30471973-30471992 | None:intergenic | 25.0% |
| ! | TTCTATAAACTACTACTCTA+TGG | + | chr5_4:30472056-30472075 | None:intergenic | 25.0% |
| !! | ACTTTTCCCTACAAATTAAA+AGG | + | chr5_4:30472217-30472236 | None:intergenic | 25.0% |
| ! | TGTCAAATTGTTGAACAATA+TGG | - | chr5_4:30470236-30470255 | Msa0847710:three_prime_UTR | 25.0% |
| !!! | ATATAGTTGATAGAAGTGTT+GGG | - | chr5_4:30470394-30470413 | Msa0847710:CDS | 25.0% |
| ! | AAAGCAATGTTATTGAGAAT+GGG | + | chr5_4:30470570-30470589 | None:intergenic | 25.0% |
| ! | ACATTGCTTTCATTCTTAAA+TGG | - | chr5_4:30470580-30470599 | Msa0847710:intron | 25.0% |
| !!! | ATTCCATTTATTGATTTCCT+TGG | - | chr5_4:30470695-30470714 | Msa0847710:intron | 25.0% |
| !!! | GAATTGTTTTTAGGTAATGT+TGG | + | chr5_4:30470812-30470831 | None:intergenic | 25.0% |
| ! | ACTTTCTTTATCACATCATA+TGG | - | chr5_4:30470921-30470940 | Msa0847710:intron | 25.0% |
| ! | CTTTCTTTATCACATCATAT+GGG | - | chr5_4:30470922-30470941 | Msa0847710:intron | 25.0% |
| ! | TTTATTAAAGTTTGGAGATG+GGG | + | chr5_4:30470949-30470968 | None:intergenic | 25.0% |
| ! | TTGAACATGATCATAATGAA+CGG | + | chr5_4:30471055-30471074 | None:intergenic | 25.0% |
| ! | CTTTCTTTATCACATCATAT+GGG | + | chr5_4:30470922-30470941 | None:intergenic | 25.0% |
| !! | TTTCATTGCAACTTTTTGAT+TGG | - | chr5_4:30471390-30471409 | Msa0847710:intron | 25.0% |
| ! | ATAAATGGAATTGCATATGA+AGG | - | chr5_4:30471454-30471473 | Msa0847710:intron | 25.0% |
| ! | CTAAAAAAGTCATGTTTCAT+TGG | + | chr5_4:30471973-30471992 | None:intergenic | 25.0% |
| ! | TTCTATAAACTACTACTCTA+TGG | + | chr5_4:30472056-30472075 | None:intergenic | 25.0% |
| !! | ACTTTTCCCTACAAATTAAA+AGG | + | chr5_4:30472217-30472236 | None:intergenic | 25.0% |
| ! | ACAAAGTTTTTCATCTTCAG+CGG | + | chr5_4:30470219-30470238 | None:intergenic | 30.0% |
| GAAAAAATCCAAGGAATATC+AGG | - | chr5_4:30470284-30470303 | Msa0847710:three_prime_UTR | 30.0% | |
| !! | CATATAGTTGATAGAAGTGT+TGG | - | chr5_4:30470393-30470412 | Msa0847710:CDS | 30.0% |
| GAAAGCAATGTTATTGAGAA+TGG | + | chr5_4:30470571-30470590 | None:intergenic | 30.0% | |
| ATAAATGGAATTGCATCTGA+AGG | + | chr5_4:30470686-30470705 | None:intergenic | 30.0% | |
| ACTCCAAGGAAATCAATAAA+TGG | + | chr5_4:30470701-30470720 | None:intergenic | 30.0% | |
| !! | TTTATTGATTTCCTTGGAGT+AGG | - | chr5_4:30470701-30470720 | Msa0847710:intron | 30.0% |
| GGTTTATAACTTTGATCATG+TGG | + | chr5_4:30471411-30471430 | None:intergenic | 30.0% | |
| ! | TTTCATTGCAGCTTTTTGAT+TGG | + | chr5_4:30470750-30470769 | None:intergenic | 30.0% |
| CATTACCTAAAAACAATTCG+AGG | - | chr5_4:30470813-30470832 | Msa0847710:intron | 30.0% | |
| !! | GTTTACCTCGAATTGTTTTT+AGG | + | chr5_4:30470821-30470840 | None:intergenic | 30.0% |
| ACAATTCGAGGTAAACAAAA+AGG | - | chr5_4:30470825-30470844 | Msa0847710:intron | 30.0% | |
| TAAATGAGAAAGAGAGATAG+GGG | + | chr5_4:30470902-30470921 | None:intergenic | 30.0% | |
| GTAAATGAGAAAGAGAGATA+GGG | + | chr5_4:30470903-30470922 | None:intergenic | 30.0% | |
| AGTAAATGAGAAAGAGAGAT+AGG | + | chr5_4:30470904-30470923 | None:intergenic | 30.0% | |
| TGATCATAATGAACGGATAA+AGG | + | chr5_4:30471105-30471124 | None:intergenic | 30.0% | |
| TGATCATAATGAACGGATAA+AGG | - | chr5_4:30471105-30471124 | Msa0847710:intron | 30.0% | |
| CCTTTCTTTATCACATCATA+TGG | + | chr5_4:30471218-30471237 | None:intergenic | 30.0% | |
| CCATATGATGTGATAAAGAA+AGG | - | chr5_4:30471215-30471234 | Msa0847710:intron | 30.0% | |
| AGGAAATGAGAAAGAGATAT+AGG | - | chr5_4:30471235-30471254 | Msa0847710:intron | 30.0% | |
| GGAAATGAGAAAGAGATATA+GGG | - | chr5_4:30471236-30471255 | Msa0847710:intron | 30.0% | |
| GAAATGAGAAAGAGATATAG+GGG | - | chr5_4:30471237-30471256 | Msa0847710:intron | 30.0% | |
| CATTACCTAAAAACCATTCA+AGG | + | chr5_4:30471326-30471345 | None:intergenic | 30.0% | |
| !!! | GAATGGTTTTTAGGTAATGT+TGG | - | chr5_4:30471327-30471346 | Msa0847710:intron | 30.0% |
| GGTTTATAACTTTGATCATG+TGG | - | chr5_4:30471411-30471430 | Msa0847710:intron | 30.0% | |
| TTTATAGACTTCCTTAGAGT+AGG | + | chr5_4:30471439-30471458 | None:intergenic | 30.0% | |
| ! | ACTCTAAGGAAGTCTATAAA+TGG | - | chr5_4:30471439-30471458 | Msa0847710:intron | 30.0% |
| ! | TATTGCTGTTGTTGTTGATA+AGG | - | chr5_4:30471537-30471556 | Msa0847710:intron | 30.0% |
| ! | GAAATCATTGATCATTTTCC+AGG | + | chr5_4:30471729-30471748 | None:intergenic | 30.0% |
| ACATCATATAATATTGCAGC+TGG | + | chr5_4:30471863-30471882 | None:intergenic | 30.0% | |
| TGATTCATCAAAACCAACAA+TGG | - | chr5_4:30471882-30471901 | Msa0847710:intron | 30.0% | |
| AATTTGTAGGGAAAAGTTGT+TGG | - | chr5_4:30472220-30472239 | Msa0847710:intron | 30.0% | |
| AAAGGTCTCTTGTTAATTCT+TGG | + | chr5_4:30472270-30472289 | None:intergenic | 30.0% | |
| ATCGAATTTACGGAAACAAA+TGG | - | chr5_4:30472325-30472344 | Msa0847710:intron | 30.0% | |
| TCGAATTTACGGAAACAAAT+GGG | - | chr5_4:30472326-30472345 | Msa0847710:intron | 30.0% | |
| TCACAGAAATTTCATTGAAG+AGG | - | chr5_4:30472422-30472441 | Msa0847710:intron | 30.0% | |
| CACAGAAGTAAAATTTCAAG+AGG | - | chr5_4:30472512-30472531 | Msa0847710:intron | 30.0% | |
| ! | ACAAAGTTTTTCATCTTCAG+CGG | + | chr5_4:30470219-30470238 | None:intergenic | 30.0% |
| GAAAAAATCCAAGGAATATC+AGG | - | chr5_4:30470284-30470303 | Msa0847710:three_prime_UTR | 30.0% | |
| !! | CATATAGTTGATAGAAGTGT+TGG | - | chr5_4:30470393-30470412 | Msa0847710:CDS | 30.0% |
| GAAAGCAATGTTATTGAGAA+TGG | + | chr5_4:30470571-30470590 | None:intergenic | 30.0% | |
| ATAAATGGAATTGCATCTGA+AGG | + | chr5_4:30470686-30470705 | None:intergenic | 30.0% | |
| ACTCCAAGGAAATCAATAAA+TGG | + | chr5_4:30470701-30470720 | None:intergenic | 30.0% | |
| !! | TTTATTGATTTCCTTGGAGT+AGG | - | chr5_4:30470701-30470720 | Msa0847710:intron | 30.0% |
| GGTTTATAACTTTGATCATG+TGG | + | chr5_4:30471411-30471430 | None:intergenic | 30.0% | |
| ! | TTTCATTGCAGCTTTTTGAT+TGG | + | chr5_4:30470750-30470769 | None:intergenic | 30.0% |
| CATTACCTAAAAACAATTCG+AGG | - | chr5_4:30470813-30470832 | Msa0847710:intron | 30.0% | |
| !! | GTTTACCTCGAATTGTTTTT+AGG | + | chr5_4:30470821-30470840 | None:intergenic | 30.0% |
| ACAATTCGAGGTAAACAAAA+AGG | - | chr5_4:30470825-30470844 | Msa0847710:intron | 30.0% | |
| TAAATGAGAAAGAGAGATAG+GGG | + | chr5_4:30470902-30470921 | None:intergenic | 30.0% | |
| GTAAATGAGAAAGAGAGATA+GGG | + | chr5_4:30470903-30470922 | None:intergenic | 30.0% | |
| AGTAAATGAGAAAGAGAGAT+AGG | + | chr5_4:30470904-30470923 | None:intergenic | 30.0% | |
| TGATCATAATGAACGGATAA+AGG | + | chr5_4:30471105-30471124 | None:intergenic | 30.0% | |
| TGATCATAATGAACGGATAA+AGG | - | chr5_4:30471105-30471124 | Msa0847710:intron | 30.0% | |
| CCTTTCTTTATCACATCATA+TGG | + | chr5_4:30471218-30471237 | None:intergenic | 30.0% | |
| CCATATGATGTGATAAAGAA+AGG | - | chr5_4:30471215-30471234 | Msa0847710:intron | 30.0% | |
| AGGAAATGAGAAAGAGATAT+AGG | - | chr5_4:30471235-30471254 | Msa0847710:intron | 30.0% | |
| GGAAATGAGAAAGAGATATA+GGG | - | chr5_4:30471236-30471255 | Msa0847710:intron | 30.0% | |
| GAAATGAGAAAGAGATATAG+GGG | - | chr5_4:30471237-30471256 | Msa0847710:intron | 30.0% | |
| CATTACCTAAAAACCATTCA+AGG | + | chr5_4:30471326-30471345 | None:intergenic | 30.0% | |
| !!! | GAATGGTTTTTAGGTAATGT+TGG | - | chr5_4:30471327-30471346 | Msa0847710:intron | 30.0% |
| GGTTTATAACTTTGATCATG+TGG | - | chr5_4:30471411-30471430 | Msa0847710:intron | 30.0% | |
| TTTATAGACTTCCTTAGAGT+AGG | + | chr5_4:30471439-30471458 | None:intergenic | 30.0% | |
| ! | ACTCTAAGGAAGTCTATAAA+TGG | - | chr5_4:30471439-30471458 | Msa0847710:intron | 30.0% |
| ! | TATTGCTGTTGTTGTTGATA+AGG | - | chr5_4:30471537-30471556 | Msa0847710:intron | 30.0% |
| ! | GAAATCATTGATCATTTTCC+AGG | + | chr5_4:30471729-30471748 | None:intergenic | 30.0% |
| ACATCATATAATATTGCAGC+TGG | + | chr5_4:30471863-30471882 | None:intergenic | 30.0% | |
| TGATTCATCAAAACCAACAA+TGG | - | chr5_4:30471882-30471901 | Msa0847710:intron | 30.0% | |
| AATTTGTAGGGAAAAGTTGT+TGG | - | chr5_4:30472220-30472239 | Msa0847710:intron | 30.0% | |
| AAAGGTCTCTTGTTAATTCT+TGG | + | chr5_4:30472270-30472289 | None:intergenic | 30.0% | |
| ATCGAATTTACGGAAACAAA+TGG | - | chr5_4:30472325-30472344 | Msa0847710:intron | 30.0% | |
| TCGAATTTACGGAAACAAAT+GGG | - | chr5_4:30472326-30472345 | Msa0847710:intron | 30.0% | |
| TCACAGAAATTTCATTGAAG+AGG | - | chr5_4:30472422-30472441 | Msa0847710:intron | 30.0% | |
| CACAGAAGTAAAATTTCAAG+AGG | - | chr5_4:30472512-30472531 | Msa0847710:intron | 30.0% | |
| ! | CAAAGTTTTTCATCTTCAGC+GGG | + | chr5_4:30470218-30470237 | None:intergenic | 35.0% |
| TCAACTGCTGAAAAAATCCA+AGG | - | chr5_4:30470275-30470294 | Msa0847710:three_prime_UTR | 35.0% | |
| AATGCATACCTGATATTCCT+TGG | + | chr5_4:30470295-30470314 | None:intergenic | 35.0% | |
| AAAGGATAGTTGCTCTACTT+TGG | - | chr5_4:30470843-30470862 | Msa0847710:intron | 35.0% | |
| AAAGGATAGTTGCTCTACTT+TGG | + | chr5_4:30470843-30470862 | None:intergenic | 35.0% | |
| ! | GTTCACCTTGAATGGTTTTT+AGG | - | chr5_4:30471318-30471337 | Msa0847710:intron | 35.0% |
| GAGCTTCAATGGAAAAAAGA+GGG | - | chr5_4:30471367-30471386 | Msa0847710:intron | 35.0% | |
| AATGGAATTGCATATGAAGG+AGG | - | chr5_4:30471457-30471476 | Msa0847710:intron | 35.0% | |
| ATGGAATTGCATATGAAGGA+GGG | - | chr5_4:30471458-30471477 | Msa0847710:intron | 35.0% | |
| AAAGTATGTGAGTAAGGATC+TGG | + | chr5_4:30471823-30471842 | None:intergenic | 35.0% | |
| ! | TCACTGAAAGTATGTGAGTA+AGG | + | chr5_4:30471829-30471848 | None:intergenic | 35.0% |
| ATCAAAACCAACAATGGTCA+TGG | - | chr5_4:30471888-30471907 | Msa0847710:intron | 35.0% | |
| TGCATAAAATTAGAGAGGGT+AGG | + | chr5_4:30471939-30471958 | None:intergenic | 35.0% | |
| CACAGAAGTAAAATTCCAAG+AGG | + | chr5_4:30472389-30472408 | None:intergenic | 35.0% | |
| ! | CAAAGTTTTTCATCTTCAGC+GGG | + | chr5_4:30470218-30470237 | None:intergenic | 35.0% |
| TCAACTGCTGAAAAAATCCA+AGG | - | chr5_4:30470275-30470294 | Msa0847710:three_prime_UTR | 35.0% | |
| AATGCATACCTGATATTCCT+TGG | + | chr5_4:30470295-30470314 | None:intergenic | 35.0% | |
| AAAGGATAGTTGCTCTACTT+TGG | - | chr5_4:30470843-30470862 | Msa0847710:intron | 35.0% | |
| AAAGGATAGTTGCTCTACTT+TGG | + | chr5_4:30470843-30470862 | None:intergenic | 35.0% | |
| ! | GTTCACCTTGAATGGTTTTT+AGG | - | chr5_4:30471318-30471337 | Msa0847710:intron | 35.0% |
| GAGCTTCAATGGAAAAAAGA+GGG | - | chr5_4:30471367-30471386 | Msa0847710:intron | 35.0% | |
| AATGGAATTGCATATGAAGG+AGG | - | chr5_4:30471457-30471476 | Msa0847710:intron | 35.0% | |
| ATGGAATTGCATATGAAGGA+GGG | - | chr5_4:30471458-30471477 | Msa0847710:intron | 35.0% | |
| AAAGTATGTGAGTAAGGATC+TGG | + | chr5_4:30471823-30471842 | None:intergenic | 35.0% | |
| ! | TCACTGAAAGTATGTGAGTA+AGG | + | chr5_4:30471829-30471848 | None:intergenic | 35.0% |
| ATCAAAACCAACAATGGTCA+TGG | - | chr5_4:30471888-30471907 | Msa0847710:intron | 35.0% | |
| TGCATAAAATTAGAGAGGGT+AGG | + | chr5_4:30471939-30471958 | None:intergenic | 35.0% | |
| CACAGAAGTAAAATTCCAAG+AGG | + | chr5_4:30472389-30472408 | None:intergenic | 35.0% | |
| TGAAGTTCCACTATCTTCAG+TGG | - | chr5_4:30470613-30470632 | Msa0847710:intron | 40.0% | |
| ATGGAATTGCATCTGAAGGA+GGG | + | chr5_4:30470682-30470701 | None:intergenic | 40.0% | |
| AATGGAATTGCATCTGAAGG+AGG | + | chr5_4:30470683-30470702 | None:intergenic | 40.0% | |
| GGAGCTTCAATGGAAGAAAA+GGG | + | chr5_4:30470773-30470792 | None:intergenic | 40.0% | |
| AGGAGCTTCAATGGAAGAAA+AGG | + | chr5_4:30470774-30470793 | None:intergenic | 40.0% | |
| CCTATATTGAGGAGCTTCAA+TGG | + | chr5_4:30471356-30471375 | None:intergenic | 40.0% | |
| CCATTGAAGCTCCTCAATAT+AGG | - | chr5_4:30470780-30470799 | Msa0847710:intron | 40.0% | |
| TAGTTGCTCTACTTTGGTCA+CGG | - | chr5_4:30470849-30470868 | Msa0847710:intron | 40.0% | |
| TCCTTTCTGTTCACCTTGAA+TGG | - | chr5_4:30471310-30471329 | Msa0847710:intron | 40.0% | |
| ACCATTCAAGGTGAACAGAA+AGG | + | chr5_4:30471314-30471333 | None:intergenic | 40.0% | |
| CCATTGAAGCTCCTCAATAT+AGG | + | chr5_4:30470780-30470799 | None:intergenic | 40.0% | |
| CCTATATTGAGGAGCTTCAA+TGG | - | chr5_4:30471356-30471375 | Msa0847710:intron | 40.0% | |
| GGAGCTTCAATGGAAAAAAG+AGG | - | chr5_4:30471366-30471385 | Msa0847710:intron | 40.0% | |
| TGGAATTGCATATGAAGGAG+GGG | - | chr5_4:30471459-30471478 | Msa0847710:intron | 40.0% | |
| AGTATGCCAATGAGCCAAAT+GGG | + | chr5_4:30471657-30471676 | None:intergenic | 40.0% | |
| AGCAGCCAATGATGTATGTA+AGG | - | chr5_4:30471749-30471768 | Msa0847710:intron | 40.0% | |
| TACATGTAATTCACCTCAGG+AGG | + | chr5_4:30471778-30471797 | None:intergenic | 40.0% | |
| GGATACATGTAATTCACCTC+AGG | + | chr5_4:30471781-30471800 | None:intergenic | 40.0% | |
| TTGATCCCCGTTTCATCTTT+AGG | - | chr5_4:30472017-30472036 | Msa0847710:intron | 40.0% | |
| TGATCCCCGTTTCATCTTTA+GGG | - | chr5_4:30472018-30472037 | Msa0847710:intron | 40.0% | |
| AAACCCCCTAAAGATGAAAC+GGG | + | chr5_4:30472026-30472045 | None:intergenic | 40.0% | |
| GAAACCCCCTAAAGATGAAA+CGG | + | chr5_4:30472027-30472046 | None:intergenic | 40.0% | |
| ! | TAGGGAAAAGTTGTTGGTTG+AGG | - | chr5_4:30472226-30472245 | Msa0847710:intron | 40.0% |
| TTTCCGTAAATTCGATGTGC+CGG | + | chr5_4:30472321-30472340 | None:intergenic | 40.0% | |
| TGAAGTTCCACTATCTTCAG+TGG | - | chr5_4:30470613-30470632 | Msa0847710:intron | 40.0% | |
| ATGGAATTGCATCTGAAGGA+GGG | + | chr5_4:30470682-30470701 | None:intergenic | 40.0% | |
| AATGGAATTGCATCTGAAGG+AGG | + | chr5_4:30470683-30470702 | None:intergenic | 40.0% | |
| GGAGCTTCAATGGAAGAAAA+GGG | + | chr5_4:30470773-30470792 | None:intergenic | 40.0% | |
| AGGAGCTTCAATGGAAGAAA+AGG | + | chr5_4:30470774-30470793 | None:intergenic | 40.0% | |
| CCTATATTGAGGAGCTTCAA+TGG | + | chr5_4:30471356-30471375 | None:intergenic | 40.0% | |
| CCATTGAAGCTCCTCAATAT+AGG | - | chr5_4:30470780-30470799 | Msa0847710:intron | 40.0% | |
| TAGTTGCTCTACTTTGGTCA+CGG | - | chr5_4:30470849-30470868 | Msa0847710:intron | 40.0% | |
| TCCTTTCTGTTCACCTTGAA+TGG | - | chr5_4:30471310-30471329 | Msa0847710:intron | 40.0% | |
| ACCATTCAAGGTGAACAGAA+AGG | + | chr5_4:30471314-30471333 | None:intergenic | 40.0% | |
| CCATTGAAGCTCCTCAATAT+AGG | + | chr5_4:30470780-30470799 | None:intergenic | 40.0% | |
| CCTATATTGAGGAGCTTCAA+TGG | - | chr5_4:30471356-30471375 | Msa0847710:intron | 40.0% | |
| GGAGCTTCAATGGAAAAAAG+AGG | - | chr5_4:30471366-30471385 | Msa0847710:intron | 40.0% | |
| TGGAATTGCATATGAAGGAG+GGG | - | chr5_4:30471459-30471478 | Msa0847710:intron | 40.0% | |
| AGTATGCCAATGAGCCAAAT+GGG | + | chr5_4:30471657-30471676 | None:intergenic | 40.0% | |
| AGCAGCCAATGATGTATGTA+AGG | - | chr5_4:30471749-30471768 | Msa0847710:intron | 40.0% | |
| TACATGTAATTCACCTCAGG+AGG | + | chr5_4:30471778-30471797 | None:intergenic | 40.0% | |
| GGATACATGTAATTCACCTC+AGG | + | chr5_4:30471781-30471800 | None:intergenic | 40.0% | |
| TTGATCCCCGTTTCATCTTT+AGG | - | chr5_4:30472017-30472036 | Msa0847710:intron | 40.0% | |
| TGATCCCCGTTTCATCTTTA+GGG | - | chr5_4:30472018-30472037 | Msa0847710:intron | 40.0% | |
| AAACCCCCTAAAGATGAAAC+GGG | + | chr5_4:30472026-30472045 | None:intergenic | 40.0% | |
| GAAACCCCCTAAAGATGAAA+CGG | + | chr5_4:30472027-30472046 | None:intergenic | 40.0% | |
| ! | TAGGGAAAAGTTGTTGGTTG+AGG | - | chr5_4:30472226-30472245 | Msa0847710:intron | 40.0% |
| TTTCCGTAAATTCGATGTGC+CGG | + | chr5_4:30472321-30472340 | None:intergenic | 40.0% | |
| GATACCAAGAGTTGTCAACG+TGG | - | chr5_4:30470182-30470201 | Msa0847710:three_prime_UTR | 45.0% | |
| ATGACCACGTTGACAACTCT+TGG | + | chr5_4:30470189-30470208 | None:intergenic | 45.0% | |
| TGGAATTGCATCTGAAGGAG+GGG | + | chr5_4:30470681-30470700 | None:intergenic | 45.0% | |
| GAAGCTCCTCAATATAGGTG+TGG | - | chr5_4:30470785-30470804 | Msa0847710:intron | 45.0% | |
| GTTGGACCACACCTATATTG+AGG | + | chr5_4:30471345-30471364 | None:intergenic | 45.0% | |
| GTTGGACCACACCTATATTG+AGG | - | chr5_4:30471345-30471364 | Msa0847710:intron | 45.0% | |
| GAAGCTCCTCAATATAGGTG+TGG | + | chr5_4:30470785-30470804 | None:intergenic | 45.0% | |
| ATCATGTGGCTCCTACTCTA+AGG | - | chr5_4:30471425-30471444 | Msa0847710:intron | 45.0% | |
| GGAATTGCATATGAAGGAGG+GGG | - | chr5_4:30471460-30471479 | Msa0847710:intron | 45.0% | |
| GGTAACATTCCCGCTATTCA+AGG | + | chr5_4:30471633-30471652 | None:intergenic | 45.0% | |
| ! | TTACCACCCATTTGGCTCAT+TGG | - | chr5_4:30471648-30471667 | Msa0847710:intron | 45.0% |
| GAGTATGCCAATGAGCCAAA+TGG | + | chr5_4:30471658-30471677 | None:intergenic | 45.0% | |
| ! | GGTGGCCTTACATACATCAT+TGG | + | chr5_4:30471757-30471776 | None:intergenic | 45.0% |
| ATGTAATTCACCTCAGGAGG+TGG | + | chr5_4:30471775-30471794 | None:intergenic | 45.0% | |
| AAGGATCTGGAGGAGGATAA+GGG | + | chr5_4:30471810-30471829 | None:intergenic | 45.0% | |
| TAAGGATCTGGAGGAGGATA+AGG | + | chr5_4:30471811-30471830 | None:intergenic | 45.0% | |
| GTATGTGAGTAAGGATCTGG+AGG | + | chr5_4:30471820-30471839 | None:intergenic | 45.0% | |
| ACCAACAATGGTCATGGTGA+TGG | - | chr5_4:30471894-30471913 | Msa0847710:intron | 45.0% | |
| ACCATCACCATGACCATTGT+TGG | + | chr5_4:30471898-30471917 | None:intergenic | 45.0% | |
| GATCCCCGTTTCATCTTTAG+GGG | - | chr5_4:30472019-30472038 | Msa0847710:intron | 45.0% | |
| ATCCCCGTTTCATCTTTAGG+GGG | - | chr5_4:30472020-30472039 | Msa0847710:intron | 45.0% | |
| AACCCCCTAAAGATGAAACG+GGG | + | chr5_4:30472025-30472044 | None:intergenic | 45.0% | |
| ! | GGAAAAGTTGTTGGTTGAGG+TGG | - | chr5_4:30472229-30472248 | Msa0847710:intron | 45.0% |
| CAAGAGACCTTTCGTAGAAG+AGG | - | chr5_4:30472278-30472297 | Msa0847710:intron | 45.0% | |
| ACCTTTCGTAGAAGAGGAAG+AGG | - | chr5_4:30472284-30472303 | Msa0847710:intron | 45.0% | |
| TCCTCTTCCTCTTCTACGAA+AGG | + | chr5_4:30472288-30472307 | None:intergenic | 45.0% | |
| CTTCCGGCACATCGAATTTA+CGG | - | chr5_4:30472315-30472334 | Msa0847710:intron | 45.0% | |
| CAAGAGGCAGAAGAACTAGA+AGG | + | chr5_4:30472373-30472392 | None:intergenic | 45.0% | |
| !! | CTTCTAGTTCTTCTGCCTCT+TGG | - | chr5_4:30472371-30472390 | Msa0847710:intron | 45.0% |
| AGAGGCAAGAGAGAACTTGA+AGG | - | chr5_4:30472530-30472549 | Msa0847710:CDS | 45.0% | |
| GATACCAAGAGTTGTCAACG+TGG | - | chr5_4:30470182-30470201 | Msa0847710:three_prime_UTR | 45.0% | |
| ATGACCACGTTGACAACTCT+TGG | + | chr5_4:30470189-30470208 | None:intergenic | 45.0% | |
| TGGAATTGCATCTGAAGGAG+GGG | + | chr5_4:30470681-30470700 | None:intergenic | 45.0% | |
| GAAGCTCCTCAATATAGGTG+TGG | - | chr5_4:30470785-30470804 | Msa0847710:intron | 45.0% | |
| GTTGGACCACACCTATATTG+AGG | + | chr5_4:30471345-30471364 | None:intergenic | 45.0% | |
| GTTGGACCACACCTATATTG+AGG | - | chr5_4:30471345-30471364 | Msa0847710:intron | 45.0% | |
| GAAGCTCCTCAATATAGGTG+TGG | + | chr5_4:30470785-30470804 | None:intergenic | 45.0% | |
| ATCATGTGGCTCCTACTCTA+AGG | - | chr5_4:30471425-30471444 | Msa0847710:intron | 45.0% | |
| GGAATTGCATATGAAGGAGG+GGG | - | chr5_4:30471460-30471479 | Msa0847710:intron | 45.0% | |
| GGTAACATTCCCGCTATTCA+AGG | + | chr5_4:30471633-30471652 | None:intergenic | 45.0% | |
| ! | TTACCACCCATTTGGCTCAT+TGG | - | chr5_4:30471648-30471667 | Msa0847710:intron | 45.0% |
| GAGTATGCCAATGAGCCAAA+TGG | + | chr5_4:30471658-30471677 | None:intergenic | 45.0% | |
| ! | GGTGGCCTTACATACATCAT+TGG | + | chr5_4:30471757-30471776 | None:intergenic | 45.0% |
| ATGTAATTCACCTCAGGAGG+TGG | + | chr5_4:30471775-30471794 | None:intergenic | 45.0% | |
| AAGGATCTGGAGGAGGATAA+GGG | + | chr5_4:30471810-30471829 | None:intergenic | 45.0% | |
| TAAGGATCTGGAGGAGGATA+AGG | + | chr5_4:30471811-30471830 | None:intergenic | 45.0% | |
| GTATGTGAGTAAGGATCTGG+AGG | + | chr5_4:30471820-30471839 | None:intergenic | 45.0% | |
| ACCAACAATGGTCATGGTGA+TGG | - | chr5_4:30471894-30471913 | Msa0847710:intron | 45.0% | |
| ACCATCACCATGACCATTGT+TGG | + | chr5_4:30471898-30471917 | None:intergenic | 45.0% | |
| GATCCCCGTTTCATCTTTAG+GGG | - | chr5_4:30472019-30472038 | Msa0847710:intron | 45.0% | |
| ATCCCCGTTTCATCTTTAGG+GGG | - | chr5_4:30472020-30472039 | Msa0847710:intron | 45.0% | |
| AACCCCCTAAAGATGAAACG+GGG | + | chr5_4:30472025-30472044 | None:intergenic | 45.0% | |
| ! | GGAAAAGTTGTTGGTTGAGG+TGG | - | chr5_4:30472229-30472248 | Msa0847710:intron | 45.0% |
| CAAGAGACCTTTCGTAGAAG+AGG | - | chr5_4:30472278-30472297 | Msa0847710:intron | 45.0% | |
| ACCTTTCGTAGAAGAGGAAG+AGG | - | chr5_4:30472284-30472303 | Msa0847710:intron | 45.0% | |
| TCCTCTTCCTCTTCTACGAA+AGG | + | chr5_4:30472288-30472307 | None:intergenic | 45.0% | |
| CTTCCGGCACATCGAATTTA+CGG | - | chr5_4:30472315-30472334 | Msa0847710:intron | 45.0% | |
| CAAGAGGCAGAAGAACTAGA+AGG | + | chr5_4:30472373-30472392 | None:intergenic | 45.0% | |
| !! | CTTCTAGTTCTTCTGCCTCT+TGG | - | chr5_4:30472371-30472390 | Msa0847710:intron | 45.0% |
| AGAGGCAAGAGAGAACTTGA+AGG | - | chr5_4:30472530-30472549 | Msa0847710:CDS | 45.0% | |
| !!! | ATTATTATTATTCTTTTTTT+AGG | - | chr5_4:30471187-30471206 | Msa0847710:intron | 5.0% |
| !!! | TTATTATTATTCTTTTTTTA+GGG | - | chr5_4:30471188-30471207 | Msa0847710:intron | 5.0% |
| !!! | ATTATTATTATTCTTTTTTT+AGG | - | chr5_4:30471187-30471206 | Msa0847710:intron | 5.0% |
| !!! | TTATTATTATTCTTTTTTTA+GGG | - | chr5_4:30471188-30471207 | Msa0847710:intron | 5.0% |
| GGAATTGCATCTGAAGGAGG+GGG | + | chr5_4:30470680-30470699 | None:intergenic | 50.0% | |
| ATCATGTGGCTCCTACTCCA+AGG | + | chr5_4:30470715-30470734 | None:intergenic | 50.0% | |
| GGATTCCCCTGCATCATTTC+CGG | - | chr5_4:30471558-30471577 | Msa0847710:intron | 50.0% | |
| GATTCCCCTGCATCATTTCC+GGG | - | chr5_4:30471559-30471578 | Msa0847710:intron | 50.0% | |
| ! | GGATACTTTCAAGGTGGTGG+TGG | + | chr5_4:30471591-30471610 | None:intergenic | 50.0% |
| CGAGGATACTTTCAAGGTGG+TGG | + | chr5_4:30471594-30471613 | None:intergenic | 50.0% | |
| GGACGAGGATACTTTCAAGG+TGG | + | chr5_4:30471597-30471616 | None:intergenic | 50.0% | |
| TGCCGGTAGACCTTGAATAG+CGG | - | chr5_4:30471620-30471639 | Msa0847710:intron | 50.0% | |
| TCCCGCTATTCAAGGTCTAC+CGG | + | chr5_4:30471625-30471644 | None:intergenic | 50.0% | |
| CGGGAATGTTACCACCCATT+TGG | - | chr5_4:30471640-30471659 | Msa0847710:intron | 50.0% | |
| ATGCCAATGAGCCAAATGGG+TGG | + | chr5_4:30471654-30471673 | None:intergenic | 50.0% | |
| GGCGGTGGAGGTAATAATGT+GGG | + | chr5_4:30471687-30471706 | None:intergenic | 50.0% | |
| TTATTACCTCCACCGCCCAT+TGG | - | chr5_4:30471690-30471709 | Msa0847710:intron | 50.0% | |
| TCTGGAGGAGGATAAGGGTA+AGG | + | chr5_4:30471805-30471824 | None:intergenic | 50.0% | |
| TGTGAGTAAGGATCTGGAGG+AGG | + | chr5_4:30471817-30471836 | None:intergenic | 50.0% | |
| GGAAGAGGAGAGACTACTTC+CGG | - | chr5_4:30472299-30472318 | Msa0847710:intron | 50.0% | |
| GGAATTGCATCTGAAGGAGG+GGG | + | chr5_4:30470680-30470699 | None:intergenic | 50.0% | |
| ATCATGTGGCTCCTACTCCA+AGG | + | chr5_4:30470715-30470734 | None:intergenic | 50.0% | |
| GGATTCCCCTGCATCATTTC+CGG | - | chr5_4:30471558-30471577 | Msa0847710:intron | 50.0% | |
| GATTCCCCTGCATCATTTCC+GGG | - | chr5_4:30471559-30471578 | Msa0847710:intron | 50.0% | |
| ! | GGATACTTTCAAGGTGGTGG+TGG | + | chr5_4:30471591-30471610 | None:intergenic | 50.0% |
| CGAGGATACTTTCAAGGTGG+TGG | + | chr5_4:30471594-30471613 | None:intergenic | 50.0% | |
| GGACGAGGATACTTTCAAGG+TGG | + | chr5_4:30471597-30471616 | None:intergenic | 50.0% | |
| TGCCGGTAGACCTTGAATAG+CGG | - | chr5_4:30471620-30471639 | Msa0847710:intron | 50.0% | |
| TCCCGCTATTCAAGGTCTAC+CGG | + | chr5_4:30471625-30471644 | None:intergenic | 50.0% | |
| CGGGAATGTTACCACCCATT+TGG | - | chr5_4:30471640-30471659 | Msa0847710:intron | 50.0% | |
| ATGCCAATGAGCCAAATGGG+TGG | + | chr5_4:30471654-30471673 | None:intergenic | 50.0% | |
| GGCGGTGGAGGTAATAATGT+GGG | + | chr5_4:30471687-30471706 | None:intergenic | 50.0% | |
| TTATTACCTCCACCGCCCAT+TGG | - | chr5_4:30471690-30471709 | Msa0847710:intron | 50.0% | |
| TCTGGAGGAGGATAAGGGTA+AGG | + | chr5_4:30471805-30471824 | None:intergenic | 50.0% | |
| TGTGAGTAAGGATCTGGAGG+AGG | + | chr5_4:30471817-30471836 | None:intergenic | 50.0% | |
| GGAAGAGGAGAGACTACTTC+CGG | - | chr5_4:30472299-30472318 | Msa0847710:intron | 50.0% | |
| GCTGCTGCCACTGAAGATAG+TGG | + | chr5_4:30470623-30470642 | None:intergenic | 55.0% | |
| !! | TTTCAAGGTGGTGGTGGTCC+AGG | + | chr5_4:30471585-30471604 | None:intergenic | 55.0% |
| GGCGGACGAGGATACTTTCA+AGG | + | chr5_4:30471600-30471619 | None:intergenic | 55.0% | |
| ATTCAAGGTCTACCGGCAGG+CGG | + | chr5_4:30471618-30471637 | None:intergenic | 55.0% | |
| GCTATTCAAGGTCTACCGGC+AGG | + | chr5_4:30471621-30471640 | None:intergenic | 55.0% | |
| GCCGGTAGACCTTGAATAGC+GGG | - | chr5_4:30471621-30471640 | Msa0847710:intron | 55.0% | |
| GGGCGGTGGAGGTAATAATG+TGG | + | chr5_4:30471688-30471707 | None:intergenic | 55.0% | |
| GTATGTAAGGCCACCTCCTG+AGG | - | chr5_4:30471762-30471781 | Msa0847710:intron | 55.0% | |
| GGAGGAGGATAAGGGTAAGG+AGG | + | chr5_4:30471802-30471821 | None:intergenic | 55.0% | |
| GCTGCTGCCACTGAAGATAG+TGG | + | chr5_4:30470623-30470642 | None:intergenic | 55.0% | |
| !! | TTTCAAGGTGGTGGTGGTCC+AGG | + | chr5_4:30471585-30471604 | None:intergenic | 55.0% |
| GGCGGACGAGGATACTTTCA+AGG | + | chr5_4:30471600-30471619 | None:intergenic | 55.0% | |
| ATTCAAGGTCTACCGGCAGG+CGG | + | chr5_4:30471618-30471637 | None:intergenic | 55.0% | |
| GCTATTCAAGGTCTACCGGC+AGG | + | chr5_4:30471621-30471640 | None:intergenic | 55.0% | |
| GCCGGTAGACCTTGAATAGC+GGG | - | chr5_4:30471621-30471640 | Msa0847710:intron | 55.0% | |
| GGGCGGTGGAGGTAATAATG+TGG | + | chr5_4:30471688-30471707 | None:intergenic | 55.0% | |
| GTATGTAAGGCCACCTCCTG+AGG | - | chr5_4:30471762-30471781 | Msa0847710:intron | 55.0% | |
| GGAGGAGGATAAGGGTAAGG+AGG | + | chr5_4:30471802-30471821 | None:intergenic | 55.0% | |
| CAGGCCCGGAAATGATGCAG+GGG | + | chr5_4:30471566-30471585 | None:intergenic | 60.0% | |
| CCAGGCCCGGAAATGATGCA+GGG | + | chr5_4:30471567-30471586 | None:intergenic | 60.0% | |
| TCCAGGCCCGGAAATGATGC+AGG | + | chr5_4:30471568-30471587 | None:intergenic | 60.0% | |
| AAGTATCCTCGTCCGCCTGC+CGG | - | chr5_4:30471603-30471622 | Msa0847710:intron | 60.0% | |
| AGTATGCCAATGGGCGGTGG+AGG | + | chr5_4:30471699-30471718 | None:intergenic | 60.0% | |
| CTGAGTATGCCAATGGGCGG+TGG | + | chr5_4:30471702-30471721 | None:intergenic | 60.0% | |
| CCGCTGAGTATGCCAATGGG+CGG | + | chr5_4:30471705-30471724 | None:intergenic | 60.0% | |
| CCGCCCATTGGCATACTCAG+CGG | - | chr5_4:30471702-30471721 | Msa0847710:intron | 60.0% | |
| CGCCCATTGGCATACTCAGC+GGG | - | chr5_4:30471703-30471722 | Msa0847710:intron | 60.0% | |
| GGCCCGCTGAGTATGCCAAT+GGG | + | chr5_4:30471708-30471727 | None:intergenic | 60.0% | |
| AGGCCCGCTGAGTATGCCAA+TGG | + | chr5_4:30471709-30471728 | None:intergenic | 60.0% | |
| ATTGGCATACTCAGCGGGCC+TGG | - | chr5_4:30471708-30471727 | Msa0847710:intron | 60.0% | |
| CAGGCCCGGAAATGATGCAG+GGG | + | chr5_4:30471566-30471585 | None:intergenic | 60.0% | |
| CCAGGCCCGGAAATGATGCA+GGG | + | chr5_4:30471567-30471586 | None:intergenic | 60.0% | |
| TCCAGGCCCGGAAATGATGC+AGG | + | chr5_4:30471568-30471587 | None:intergenic | 60.0% | |
| AAGTATCCTCGTCCGCCTGC+CGG | - | chr5_4:30471603-30471622 | Msa0847710:intron | 60.0% | |
| AGTATGCCAATGGGCGGTGG+AGG | + | chr5_4:30471699-30471718 | None:intergenic | 60.0% | |
| CTGAGTATGCCAATGGGCGG+TGG | + | chr5_4:30471702-30471721 | None:intergenic | 60.0% | |
| CCGCTGAGTATGCCAATGGG+CGG | + | chr5_4:30471705-30471724 | None:intergenic | 60.0% | |
| CCGCCCATTGGCATACTCAG+CGG | - | chr5_4:30471702-30471721 | Msa0847710:intron | 60.0% | |
| CGCCCATTGGCATACTCAGC+GGG | - | chr5_4:30471703-30471722 | Msa0847710:intron | 60.0% | |
| GGCCCGCTGAGTATGCCAAT+GGG | + | chr5_4:30471708-30471727 | None:intergenic | 60.0% | |
| AGGCCCGCTGAGTATGCCAA+TGG | + | chr5_4:30471709-30471728 | None:intergenic | 60.0% | |
| ATTGGCATACTCAGCGGGCC+TGG | - | chr5_4:30471708-30471727 | Msa0847710:intron | 60.0% | |
| CCCTGCATCATTTCCGGGCC+TGG | - | chr5_4:30471564-30471583 | Msa0847710:intron | 65.0% | |
| CCCTGCATCATTTCCGGGCC+TGG | - | chr5_4:30471564-30471583 | Msa0847710:intron | 65.0% | |
| !! | AGGTGGTGGTGGTCCAGGCC+CGG | + | chr5_4:30471580-30471599 | None:intergenic | 70.0% |
| !! | AGGTGGTGGTGGTCCAGGCC+CGG | + | chr5_4:30471580-30471599 | None:intergenic | 70.0% |
| GGTCTACCGGCAGGCGGACG+AGG | + | chr5_4:30471612-30471631 | None:intergenic | 75.0% | |
| GGTCTACCGGCAGGCGGACG+AGG | + | chr5_4:30471612-30471631 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 30470155 | 30472577 | 30470155 | ID=Msa0847710;Name=Msa0847710 |
| chr5_4 | mRNA | 30470155 | 30472577 | 30470155 | ID=Msa0847710-mRNA-1;Parent=Msa0847710;Name=Msa0847710-mRNA-1;_AED=0.16;_eAED=0.26;_QI=0|0|0.5|1|0|0|2|200|65 |
| chr5_4 | exon | 30470155 | 30470503 | 30470155 | ID=Msa0847710-mRNA-1:exon:11081;Parent=Msa0847710-mRNA-1 |
| chr5_4 | exon | 30472529 | 30472577 | 30472529 | ID=Msa0847710-mRNA-1:exon:11080;Parent=Msa0847710-mRNA-1 |
| chr5_4 | CDS | 30472529 | 30472577 | 30472529 | ID=Msa0847710-mRNA-1:cds;Parent=Msa0847710-mRNA-1 |
| chr5_4 | CDS | 30470355 | 30470503 | 30470355 | ID=Msa0847710-mRNA-1:cds;Parent=Msa0847710-mRNA-1 |
| chr5_4 | three_prime_UTR | 30470155 | 30470354 | 30470155 | ID=Msa0847710-mRNA-1:three_prime_utr;Parent=Msa0847710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
