Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848660 | XP_024640623.1 | 91.813 | 171 | 9 | 1 | 1 | 166 | 1 | 171 | 3.85e-106 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848660 | A0A072TDR2 | 90.132 | 152 | 10 | 1 | 20 | 166 | 1 | 152 | 6.85e-95 | 284 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0848660 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848660 | MtrunA17_Chr2g0289081 | 60.714 | 56 | 22 | 0 | 37 | 92 | 57 | 112 | 5.91e-19 | 80.1 |
| Msa0848660 | MtrunA17_Chr2g0276841 | 29.630 | 162 | 94 | 6 | 20 | 164 | 41 | 199 | 1.22e-12 | 67.0 |
| Msa0848660 | MtrunA17_Chr5g0448761 | 29.412 | 136 | 88 | 2 | 38 | 165 | 54 | 189 | 7.21e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCGGCATTTGATTT+TGG | 0.192710 | 5_4:-33698598 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 5_4:+33698837 | Msa0848660:CDS |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 5_4:-33700472 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 5_4:+33699013 | Msa0848660:CDS |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 5_4:+33699160 | Msa0848660:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 5_4:-33699106 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 5_4:-33699160 | None:intergenic |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 5_4:-33699159 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 5_4:+33700420 | Msa0848660:intron |
| CATGTTATGACTATCTTCTT+CGG | 0.402279 | 5_4:-33698611 | None:intergenic |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 5_4:+33700496 | Msa0848660:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 5_4:+33699050 | Msa0848660:CDS |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 5_4:-33698802 | None:intergenic |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 5_4:-33699105 | None:intergenic |
| ATATCTGTTTGCTCTAATGC+TGG | 0.513015 | 5_4:+33698958 | Msa0848660:CDS |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 5_4:-33700600 | None:intergenic |
| GCTAATATTGGCATTATATG+TGG | 0.529640 | 5_4:+33700508 | Msa0848660:CDS |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 5_4:-33698981 | None:intergenic |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 5_4:+33698624 | Msa0848660:CDS |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 5_4:-33699158 | None:intergenic |
| CGAAGAAGATAGTCATAACA+TGG | 0.604552 | 5_4:+33698612 | Msa0848660:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 5_4:+33699131 | Msa0848660:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 5_4:-33698844 | None:intergenic |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 5_4:-33698801 | None:intergenic |
| AGAAGATAGTCATAACATGG+AGG | 0.736903 | 5_4:+33698615 | Msa0848660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | + | chr5_4:33699439-33699458 | Msa0848660:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | + | chr5_4:33699440-33699459 | Msa0848660:intron | 10.0% |
| !!! | ATAGAATGATTAATTTTTTT+TGG | + | chr5_4:33699439-33699458 | Msa0848660:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | + | chr5_4:33699440-33699459 | Msa0848660:intron | 10.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr5_4:33699902-33699921 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr5_4:33699902-33699921 | Msa0848660:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr5_4:33699902-33699921 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr5_4:33699902-33699921 | Msa0848660:intron | 15.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr5_4:33699404-33699423 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr5_4:33699405-33699424 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr5_4:33699487-33699506 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr5_4:33699692-33699711 | Msa0848660:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | chr5_4:33699916-33699935 | Msa0848660:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr5_4:33699978-33699997 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | chr5_4:33700393-33700412 | Msa0848660:intron | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | chr5_4:33700394-33700413 | Msa0848660:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr5_4:33700475-33700494 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr5_4:33700476-33700495 | Msa0848660:CDS | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr5_4:33699404-33699423 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr5_4:33699405-33699424 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr5_4:33699487-33699506 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr5_4:33699692-33699711 | Msa0848660:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | chr5_4:33699916-33699935 | Msa0848660:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr5_4:33699978-33699997 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | chr5_4:33700393-33700412 | Msa0848660:intron | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | chr5_4:33700394-33700413 | Msa0848660:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr5_4:33700475-33700494 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr5_4:33700476-33700495 | Msa0848660:CDS | 20.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr5_4:33698837-33698856 | Msa0848660:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr5_4:33698847-33698866 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | + | chr5_4:33698895-33698914 | Msa0848660:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr5_4:33698901-33698920 | Msa0848660:CDS | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+TGG | + | chr5_4:33699082-33699101 | Msa0848660:CDS | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | - | chr5_4:33699108-33699127 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | - | chr5_4:33699109-33699128 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr5_4:33699161-33699180 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr5_4:33699162-33699181 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | - | chr5_4:33699687-33699706 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr5_4:33699818-33699837 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | + | chr5_4:33699866-33699885 | Msa0848660:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | + | chr5_4:33700186-33700205 | Msa0848660:intron | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr5_4:33700225-33700244 | Msa0848660:intron | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr5_4:33698837-33698856 | Msa0848660:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr5_4:33698847-33698866 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | + | chr5_4:33698895-33698914 | Msa0848660:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr5_4:33698901-33698920 | Msa0848660:CDS | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+TGG | + | chr5_4:33699082-33699101 | Msa0848660:CDS | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | - | chr5_4:33699108-33699127 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | - | chr5_4:33699109-33699128 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr5_4:33699161-33699180 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr5_4:33699162-33699181 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | - | chr5_4:33699687-33699706 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr5_4:33699818-33699837 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | + | chr5_4:33699866-33699885 | Msa0848660:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | + | chr5_4:33700186-33700205 | Msa0848660:intron | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr5_4:33700225-33700244 | Msa0848660:intron | 25.0% |
| CATGTTATGACTATCTTCTT+CGG | - | chr5_4:33698614-33698633 | None:intergenic | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr5_4:33698984-33699003 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | + | chr5_4:33699013-33699032 | Msa0848660:CDS | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | chr5_4:33699050-33699069 | Msa0848660:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr5_4:33699131-33699150 | Msa0848660:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr5_4:33699163-33699182 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr5_4:33699160-33699179 | Msa0848660:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr5_4:33699176-33699195 | Msa0848660:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr5_4:33699177-33699196 | Msa0848660:CDS | 30.0% |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | - | chr5_4:33699332-33699351 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | + | chr5_4:33699451-33699470 | Msa0848660:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr5_4:33699477-33699496 | Msa0848660:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | chr5_4:33699561-33699580 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr5_4:33699579-33699598 | Msa0848660:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | + | chr5_4:33699637-33699656 | Msa0848660:intron | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | + | chr5_4:33699874-33699893 | Msa0848660:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | - | chr5_4:33699944-33699963 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr5_4:33699949-33699968 | Msa0848660:intron | 30.0% | |
| !!! | ATATGAAGACCTTTTTTTGC+TGG | + | chr5_4:33699985-33700004 | Msa0848660:intron | 30.0% |
| !!! | TATGAAGACCTTTTTTTGCT+GGG | + | chr5_4:33699986-33700005 | Msa0848660:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr5_4:33700277-33700296 | Msa0848660:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr5_4:33700278-33700297 | Msa0848660:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr5_4:33700342-33700361 | Msa0848660:intron | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr5_4:33700386-33700405 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | chr5_4:33700420-33700439 | Msa0848660:intron | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr5_4:33700483-33700502 | Msa0848660:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | + | chr5_4:33700508-33700527 | Msa0848660:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr5_4:33700624-33700643 | None:intergenic | 30.0% |
| CATGTTATGACTATCTTCTT+CGG | - | chr5_4:33698614-33698633 | None:intergenic | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr5_4:33698984-33699003 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | + | chr5_4:33699013-33699032 | Msa0848660:CDS | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | chr5_4:33699050-33699069 | Msa0848660:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr5_4:33699131-33699150 | Msa0848660:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr5_4:33699163-33699182 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr5_4:33699160-33699179 | Msa0848660:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr5_4:33699176-33699195 | Msa0848660:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr5_4:33699177-33699196 | Msa0848660:CDS | 30.0% |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | - | chr5_4:33699332-33699351 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | + | chr5_4:33699451-33699470 | Msa0848660:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr5_4:33699477-33699496 | Msa0848660:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | chr5_4:33699561-33699580 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr5_4:33699579-33699598 | Msa0848660:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | + | chr5_4:33699637-33699656 | Msa0848660:intron | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | + | chr5_4:33699874-33699893 | Msa0848660:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | - | chr5_4:33699944-33699963 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr5_4:33699949-33699968 | Msa0848660:intron | 30.0% | |
| !!! | ATATGAAGACCTTTTTTTGC+TGG | + | chr5_4:33699985-33700004 | Msa0848660:intron | 30.0% |
| !!! | TATGAAGACCTTTTTTTGCT+GGG | + | chr5_4:33699986-33700005 | Msa0848660:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr5_4:33700277-33700296 | Msa0848660:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr5_4:33700278-33700297 | Msa0848660:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr5_4:33700342-33700361 | Msa0848660:intron | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr5_4:33700386-33700405 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | chr5_4:33700420-33700439 | Msa0848660:intron | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr5_4:33700483-33700502 | Msa0848660:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | + | chr5_4:33700508-33700527 | Msa0848660:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr5_4:33700624-33700643 | None:intergenic | 30.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | - | chr5_4:33698601-33698620 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | + | chr5_4:33698612-33698631 | Msa0848660:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | + | chr5_4:33698615-33698634 | Msa0848660:CDS | 35.0% | |
| ATATCTGTTTGCTCTAATGC+TGG | + | chr5_4:33698958-33698977 | Msa0848660:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr5_4:33699218-33699237 | Msa0848660:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr5_4:33699219-33699238 | Msa0848660:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | - | chr5_4:33699253-33699272 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | + | chr5_4:33699261-33699280 | Msa0848660:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | + | chr5_4:33699289-33699308 | Msa0848660:intron | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | + | chr5_4:33699323-33699342 | Msa0848660:intron | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | + | chr5_4:33699330-33699349 | Msa0848660:intron | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | chr5_4:33699592-33699611 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | + | chr5_4:33699605-33699624 | Msa0848660:intron | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | + | chr5_4:33699622-33699641 | Msa0848660:intron | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | + | chr5_4:33699644-33699663 | Msa0848660:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | - | chr5_4:33699747-33699766 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | - | chr5_4:33699796-33699815 | None:intergenic | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | chr5_4:33699924-33699943 | Msa0848660:intron | 35.0% | |
| GTATTCATCCCAGCAAAAAA+AGG | - | chr5_4:33699997-33700016 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr5_4:33700092-33700111 | Msa0848660:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr5_4:33700356-33700375 | Msa0848660:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr5_4:33700357-33700376 | Msa0848660:intron | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr5_4:33700496-33700515 | Msa0848660:CDS | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | - | chr5_4:33700603-33700622 | None:intergenic | 35.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | - | chr5_4:33698601-33698620 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | + | chr5_4:33698612-33698631 | Msa0848660:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | + | chr5_4:33698615-33698634 | Msa0848660:CDS | 35.0% | |
| ATATCTGTTTGCTCTAATGC+TGG | + | chr5_4:33698958-33698977 | Msa0848660:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr5_4:33699218-33699237 | Msa0848660:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr5_4:33699219-33699238 | Msa0848660:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | - | chr5_4:33699253-33699272 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | + | chr5_4:33699261-33699280 | Msa0848660:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | + | chr5_4:33699289-33699308 | Msa0848660:intron | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | + | chr5_4:33699323-33699342 | Msa0848660:intron | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | + | chr5_4:33699330-33699349 | Msa0848660:intron | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | chr5_4:33699592-33699611 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | + | chr5_4:33699605-33699624 | Msa0848660:intron | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | + | chr5_4:33699622-33699641 | Msa0848660:intron | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | + | chr5_4:33699644-33699663 | Msa0848660:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | - | chr5_4:33699747-33699766 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | - | chr5_4:33699796-33699815 | None:intergenic | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | chr5_4:33699924-33699943 | Msa0848660:intron | 35.0% | |
| GTATTCATCCCAGCAAAAAA+AGG | - | chr5_4:33699997-33700016 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr5_4:33700092-33700111 | Msa0848660:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr5_4:33700356-33700375 | Msa0848660:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr5_4:33700357-33700376 | Msa0848660:intron | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr5_4:33700496-33700515 | Msa0848660:CDS | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | - | chr5_4:33700603-33700622 | None:intergenic | 35.0% |
| TCATAACATGGAGGACATAG+AGG | + | chr5_4:33698624-33698643 | Msa0848660:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | - | chr5_4:33698804-33698823 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | - | chr5_4:33698805-33698824 | None:intergenic | 40.0% | |
| AAGCAAAAATGTGGCCCAAA+TGG | + | chr5_4:33699091-33699110 | Msa0848660:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr5_4:33699180-33699199 | Msa0848660:CDS | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr5_4:33699181-33699200 | Msa0848660:CDS | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr5_4:33699182-33699201 | Msa0848660:CDS | 40.0% | |
| !!! | CTTCCCCACCCATTTTTTTA+TGG | - | chr5_4:33699188-33699207 | None:intergenic | 40.0% |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr5_4:33699552-33699571 | None:intergenic | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | + | chr5_4:33699650-33699669 | Msa0848660:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | + | chr5_4:33699651-33699670 | Msa0848660:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | + | chr5_4:33699751-33699770 | Msa0848660:intron | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | + | chr5_4:33699887-33699906 | Msa0848660:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr5_4:33700258-33700277 | Msa0848660:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr5_4:33700270-33700289 | None:intergenic | 40.0% |
| TCATAACATGGAGGACATAG+AGG | + | chr5_4:33698624-33698643 | Msa0848660:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | - | chr5_4:33698804-33698823 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | - | chr5_4:33698805-33698824 | None:intergenic | 40.0% | |
| AAGCAAAAATGTGGCCCAAA+TGG | + | chr5_4:33699091-33699110 | Msa0848660:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr5_4:33699180-33699199 | Msa0848660:CDS | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr5_4:33699181-33699200 | Msa0848660:CDS | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr5_4:33699182-33699201 | Msa0848660:CDS | 40.0% | |
| !!! | CTTCCCCACCCATTTTTTTA+TGG | - | chr5_4:33699188-33699207 | None:intergenic | 40.0% |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr5_4:33699552-33699571 | None:intergenic | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | + | chr5_4:33699650-33699669 | Msa0848660:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | + | chr5_4:33699651-33699670 | Msa0848660:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | + | chr5_4:33699751-33699770 | Msa0848660:intron | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | + | chr5_4:33699887-33699906 | Msa0848660:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr5_4:33700258-33700277 | Msa0848660:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr5_4:33700270-33700289 | None:intergenic | 40.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | - | chr5_4:33699249-33699268 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr5_4:33699546-33699565 | Msa0848660:intron | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | + | chr5_4:33699702-33699721 | Msa0848660:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | + | chr5_4:33699716-33699735 | Msa0848660:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | + | chr5_4:33700004-33700023 | Msa0848660:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | chr5_4:33700076-33700095 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr5_4:33700369-33700388 | None:intergenic | 45.0% | |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | - | chr5_4:33699249-33699268 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr5_4:33699546-33699565 | Msa0848660:intron | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | + | chr5_4:33699702-33699721 | Msa0848660:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | + | chr5_4:33699716-33699735 | Msa0848660:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | + | chr5_4:33700004-33700023 | Msa0848660:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | chr5_4:33700076-33700095 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr5_4:33700369-33700388 | None:intergenic | 45.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr5_4:33699457-33699476 | Msa0848660:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | + | chr5_4:33699654-33699673 | Msa0848660:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr5_4:33700240-33700259 | Msa0848660:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr5_4:33700370-33700389 | Msa0848660:intron | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr5_4:33699457-33699476 | Msa0848660:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | + | chr5_4:33699654-33699673 | Msa0848660:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr5_4:33700240-33700259 | Msa0848660:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr5_4:33700370-33700389 | Msa0848660:intron | 50.0% | |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr5_4:33699231-33699250 | Msa0848660:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr5_4:33699461-33699480 | Msa0848660:intron | 55.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr5_4:33699231-33699250 | Msa0848660:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr5_4:33699461-33699480 | Msa0848660:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 33698589 | 33700645 | 33698589 | ID=Msa0848660;Name=Msa0848660 |
| chr5_4 | mRNA | 33698589 | 33700645 | 33698589 | ID=Msa0848660-mRNA-1;Parent=Msa0848660;Name=Msa0848660-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.75|0.33|0.25|4|0|238 |
| chr5_4 | exon | 33698589 | 33698645 | 33698589 | ID=Msa0848660-mRNA-1:exon:11620;Parent=Msa0848660-mRNA-1 |
| chr5_4 | exon | 33698772 | 33698994 | 33698772 | ID=Msa0848660-mRNA-1:exon:11621;Parent=Msa0848660-mRNA-1 |
| chr5_4 | exon | 33699010 | 33699226 | 33699010 | ID=Msa0848660-mRNA-1:exon:11622;Parent=Msa0848660-mRNA-1 |
| chr5_4 | exon | 33700429 | 33700645 | 33700429 | ID=Msa0848660-mRNA-1:exon:11623;Parent=Msa0848660-mRNA-1 |
| chr5_4 | CDS | 33698589 | 33698645 | 33698589 | ID=Msa0848660-mRNA-1:cds;Parent=Msa0848660-mRNA-1 |
| chr5_4 | CDS | 33698772 | 33698994 | 33698772 | ID=Msa0848660-mRNA-1:cds;Parent=Msa0848660-mRNA-1 |
| chr5_4 | CDS | 33699010 | 33699226 | 33699010 | ID=Msa0848660-mRNA-1:cds;Parent=Msa0848660-mRNA-1 |
| chr5_4 | CDS | 33700429 | 33700645 | 33700429 | ID=Msa0848660-mRNA-1:cds;Parent=Msa0848660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
