Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848790 | QDX01717.1 | 99.551 | 445 | 2 | 0 | 1 | 445 | 1 | 445 | 0.0 | 920 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848790 | sp|Q6NQK2|NAC8_ARATH | 57.451 | 463 | 162 | 10 | 1 | 443 | 1 | 448 | 1.38e-175 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848790 | A0A6B7JFD4 | 99.551 | 445 | 2 | 0 | 1 | 445 | 1 | 445 | 0.0 | 920 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0848790 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848790 | MtrunA17_Chr5g0422431 | 97.528 | 445 | 11 | 0 | 1 | 445 | 1 | 445 | 0.0 | 901 |
| Msa0848790 | MtrunA17_Chr1g0198751 | 62.083 | 480 | 142 | 8 | 2 | 444 | 4 | 480 | 0.0 | 572 |
| Msa0848790 | MtrunA17_Chr1g0198741 | 51.976 | 329 | 109 | 8 | 114 | 440 | 8 | 289 | 1.63e-95 | 289 |
| Msa0848790 | MtrunA17_Chr7g0227071 | 54.425 | 226 | 79 | 3 | 6 | 219 | 5 | 218 | 7.59e-83 | 263 |
| Msa0848790 | MtrunA17_Chr2g0282871 | 49.402 | 251 | 117 | 4 | 34 | 274 | 27 | 277 | 3.60e-76 | 240 |
| Msa0848790 | MtrunA17_Chr4g0046431 | 58.081 | 198 | 80 | 2 | 36 | 230 | 44 | 241 | 2.35e-75 | 238 |
| Msa0848790 | MtrunA17_Chr8g0389661 | 59.162 | 191 | 68 | 3 | 36 | 218 | 27 | 215 | 9.91e-73 | 236 |
| Msa0848790 | MtrunA17_Chr8g0367761 | 60.556 | 180 | 68 | 2 | 36 | 212 | 44 | 223 | 1.97e-72 | 228 |
| Msa0848790 | MtrunA17_Chr4g0040541 | 55.330 | 197 | 83 | 2 | 32 | 223 | 19 | 215 | 1.67e-68 | 219 |
| Msa0848790 | MtrunA17_Chr2g0324961 | 55.446 | 202 | 86 | 2 | 32 | 229 | 20 | 221 | 5.11e-64 | 207 |
| Msa0848790 | MtrunA17_Chr6g0484441 | 30.168 | 179 | 107 | 6 | 58 | 233 | 5 | 168 | 3.14e-14 | 73.6 |
| Msa0848790 | MtrunA17_Chr1g0147421 | 30.978 | 184 | 104 | 10 | 58 | 234 | 27 | 194 | 2.07e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848790 | AT1G25580.1 | 57.451 | 463 | 162 | 10 | 1 | 443 | 1 | 448 | 1.41e-176 | 502 |
| Msa0848790 | AT3G01600.1 | 55.856 | 222 | 91 | 4 | 5 | 224 | 4 | 220 | 7.48e-79 | 249 |
| Msa0848790 | AT5G14490.4 | 51.210 | 248 | 110 | 5 | 5 | 250 | 4 | 242 | 1.76e-77 | 245 |
| Msa0848790 | AT5G14490.2 | 51.210 | 248 | 110 | 5 | 5 | 250 | 4 | 242 | 2.03e-77 | 243 |
| Msa0848790 | AT5G14490.1 | 51.210 | 248 | 110 | 5 | 5 | 250 | 7 | 245 | 3.00e-77 | 244 |
| Msa0848790 | AT5G14490.3 | 51.210 | 248 | 110 | 5 | 5 | 250 | 7 | 245 | 5.43e-77 | 244 |
| Msa0848790 | AT4G29230.3 | 58.333 | 192 | 69 | 2 | 36 | 218 | 28 | 217 | 5.37e-74 | 239 |
| Msa0848790 | AT4G29230.1 | 58.333 | 192 | 69 | 2 | 36 | 218 | 28 | 217 | 1.89e-73 | 239 |
| Msa0848790 | AT4G29230.2 | 58.333 | 192 | 68 | 2 | 36 | 218 | 28 | 216 | 3.34e-73 | 238 |
| Msa0848790 | AT4G28500.1 | 51.556 | 225 | 103 | 4 | 5 | 223 | 2 | 226 | 9.27e-72 | 229 |
| Msa0848790 | AT1G28470.1 | 55.612 | 196 | 81 | 2 | 34 | 223 | 48 | 243 | 8.03e-71 | 227 |
| Msa0848790 | AT5G56620.2 | 54.872 | 195 | 75 | 4 | 36 | 218 | 22 | 215 | 2.45e-67 | 220 |
| Msa0848790 | AT5G56620.3 | 54.872 | 195 | 75 | 4 | 36 | 218 | 22 | 215 | 2.61e-67 | 221 |
| Msa0848790 | AT5G56620.1 | 54.872 | 195 | 75 | 4 | 36 | 218 | 22 | 215 | 5.95e-67 | 219 |
| Msa0848790 | AT3G18400.1 | 30.588 | 170 | 95 | 8 | 58 | 221 | 5 | 157 | 9.08e-14 | 72.4 |
| Msa0848790 | AT1G01720.1 | 26.754 | 228 | 131 | 10 | 58 | 272 | 7 | 211 | 7.22e-13 | 69.3 |
| Msa0848790 | AT3G12910.1 | 31.544 | 149 | 86 | 5 | 61 | 206 | 24 | 159 | 2.00e-11 | 65.1 |
| Msa0848790 | AT1G02220.1 | 31.250 | 160 | 90 | 6 | 59 | 215 | 4 | 146 | 2.55e-11 | 65.5 |
| Msa0848790 | AT5G53950.1 | 28.372 | 215 | 126 | 9 | 58 | 262 | 17 | 213 | 6.37e-11 | 64.3 |
Find 113 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGTATGCTGACAATT+TGG | 0.134743 | 5_4:+34730364 | None:intergenic |
| AAAATACATGATCAGGATTT+TGG | 0.158079 | 5_4:-34728944 | Msa0848790:CDS |
| CTTCTTCCACAGAGCAATTA+AGG | 0.224693 | 5_4:-34728996 | Msa0848790:CDS |
| GGATCAAATTTGACACCTTT+TGG | 0.259342 | 5_4:+34729267 | None:intergenic |
| TGCTTCTTTGTTTGACAACT+TGG | 0.279960 | 5_4:-34726897 | Msa0848790:three_prime_UTR |
| GCAGATTTCTTGTAACTATA+AGG | 0.285188 | 5_4:-34726970 | Msa0848790:three_prime_UTR |
| GAAAAGCTGAGAAAACTAAT+TGG | 0.286732 | 5_4:-34728814 | Msa0848790:CDS |
| CAAGATAGCTTTATAGCATT+TGG | 0.294737 | 5_4:-34727040 | Msa0848790:CDS |
| TTTGTGTTTATATAGGAATT+TGG | 0.295109 | 5_4:-34727067 | Msa0848790:intron |
| TGAACCCCATTCAAGATTAC+TGG | 0.295214 | 5_4:+34728887 | None:intergenic |
| CATCTGATCAGGAGGTAATT+TGG | 0.312766 | 5_4:-34729245 | Msa0848790:CDS |
| GGCTCAGGAGTCACAGATTT+GGG | 0.319343 | 5_4:+34728626 | None:intergenic |
| CAATAGTATGCTGACAATTT+GGG | 0.324090 | 5_4:+34730365 | None:intergenic |
| CCAACAGCAGCAAGTCAAAC+TGG | 0.324794 | 5_4:-34728717 | Msa0848790:CDS |
| AGGCTCAGGAGTCACAGATT+TGG | 0.328067 | 5_4:+34728625 | None:intergenic |
| GACGTCCGCTGGCACAAAAC+TGG | 0.344109 | 5_4:-34728920 | Msa0848790:CDS |
| GAAGCAACAGTTAGGTTTGC+GGG | 0.348863 | 5_4:+34726914 | None:intergenic |
| AACAAGGTAGTAAAGTAATA+TGG | 0.369882 | 5_4:-34727013 | Msa0848790:exon |
| TCTGTTGGATTCACAACAAC+TGG | 0.369929 | 5_4:-34727381 | Msa0848790:CDS |
| ATCTTGAATGGGGTTCAAAA+AGG | 0.388213 | 5_4:-34728881 | Msa0848790:CDS |
| TTATAGTGAAAGACAGTATT+CGG | 0.389524 | 5_4:-34728600 | Msa0848790:CDS |
| ATTGTTGCTTCAATAGCTTC+AGG | 0.390657 | 5_4:+34728671 | None:intergenic |
| ACATTTGACTCTGCATTTGA+AGG | 0.393867 | 5_4:+34727194 | None:intergenic |
| GCAATTAAGGCTTATAATAC+TGG | 0.394443 | 5_4:-34728983 | Msa0848790:CDS |
| ATCATCAAGTCTCTCCTCTA+TGG | 0.401552 | 5_4:-34731184 | Msa0848790:exon |
| AGAAAGACACAGCGAGAAAG+AGG | 0.401966 | 5_4:-34731249 | Msa0848790:five_prime_UTR |
| CAAACAAAGAAGCAACAGTT+AGG | 0.403441 | 5_4:+34726906 | None:intergenic |
| TTTCTATATGCAGACCATCT+TGG | 0.411265 | 5_4:-34730486 | Msa0848790:intron |
| GAATACTGTCTTTCACTATA+AGG | 0.423713 | 5_4:+34728602 | None:intergenic |
| ATATCCTTCTTCAGATGCTC+TGG | 0.424976 | 5_4:+34727245 | None:intergenic |
| CTAAACCAGTAATCTTGAAT+GGG | 0.425174 | 5_4:-34728892 | Msa0848790:CDS |
| GTCACAGATTTGGGAGTAAC+CGG | 0.426136 | 5_4:+34728635 | None:intergenic |
| TCATCTTTACCATCTCTAGT+AGG | 0.429288 | 5_4:+34727314 | None:intergenic |
| ACTAAACCAGTAATCTTGAA+TGG | 0.433030 | 5_4:-34728893 | Msa0848790:CDS |
| CAAATTTGATCCATCTGATC+AGG | 0.442832 | 5_4:-34729256 | Msa0848790:CDS |
| CAGTATTCGGATGTAGATCT+AGG | 0.447710 | 5_4:-34728587 | Msa0848790:CDS |
| AACAATAACAAAAGTGGATC+CGG | 0.448228 | 5_4:-34728654 | Msa0848790:CDS |
| AGGAACAGAAGAGGATGAAA+AGG | 0.451744 | 5_4:-34728771 | Msa0848790:CDS |
| GCAAGTCAAACTGGGTGATA+AGG | 0.457369 | 5_4:-34728708 | Msa0848790:CDS |
| TGCATCGGGAGCATGTGATC+TGG | 0.461888 | 5_4:-34730425 | Msa0848790:CDS |
| AAAAGCTGAGAAAACTAATT+GGG | 0.463490 | 5_4:-34728813 | Msa0848790:CDS |
| GCCTCCTCAGATGAATTGTC+TGG | 0.464452 | 5_4:-34727591 | Msa0848790:CDS |
| GGAGTTTCGACTAAGTCAAT+TGG | 0.465851 | 5_4:-34727153 | Msa0848790:intron |
| AGGTTTACCTGGGGAATGGC+AGG | 0.470561 | 5_4:+34728554 | None:intergenic |
| GAGTGGCCTGGTTTGCCAAA+AGG | 0.477697 | 5_4:-34729282 | Msa0848790:CDS |
| GCTTCTTTGTTTGACAACTT+GGG | 0.482925 | 5_4:-34726896 | Msa0848790:three_prime_UTR |
| TCAAGTCTCTCCTCTATGGC+GGG | 0.485338 | 5_4:-34731180 | Msa0848790:exon |
| TGAAGCAACAATAACAAAAG+TGG | 0.486548 | 5_4:-34728660 | Msa0848790:CDS |
| CATAAATAGAAAGGCTGGGT+TGG | 0.487379 | 5_4:+34727279 | None:intergenic |
| ATTGAAAATAATCCTGATGA+TGG | 0.487705 | 5_4:-34727434 | Msa0848790:CDS |
| CTTTCTATTTATGCTCAGCT+AGG | 0.488398 | 5_4:-34727269 | Msa0848790:CDS |
| CTGAGCATAAATAGAAAGGC+TGG | 0.491378 | 5_4:+34727274 | None:intergenic |
| CCTAAAACAACCTGAAAAGT+AGG | 0.498302 | 5_4:-34731216 | Msa0848790:five_prime_UTR |
| ACTCATCCTCAAAACTTGCC+AGG | 0.498733 | 5_4:-34729126 | Msa0848790:intron |
| CTGACAATTTGGGCAAGCCT+TGG | 0.506059 | 5_4:+34730375 | None:intergenic |
| GTTATGCATCAATATCATCT+AGG | 0.507798 | 5_4:-34728791 | Msa0848790:CDS |
| ATTACTCTTGAAGTGAATGA+TGG | 0.508345 | 5_4:-34729159 | Msa0848790:CDS |
| CTTTCACTATAAGGAGGCTC+AGG | 0.512409 | 5_4:+34728611 | None:intergenic |
| CCAGTTTGACTTGCTGCTGT+TGG | 0.516424 | 5_4:+34728717 | None:intergenic |
| TATATGCAGACCATCTTGGC+TGG | 0.517331 | 5_4:-34730482 | Msa0848790:intron |
| ATGTCAGGTGTTAAGCAAGA+TGG | 0.522325 | 5_4:-34729031 | Msa0848790:intron |
| AATGAAAATAATGCTGATGA+TGG | 0.526709 | 5_4:-34727485 | Msa0848790:CDS |
| GTTCTGTATATGAGTAGTGC+AGG | 0.531845 | 5_4:-34728842 | Msa0848790:CDS |
| TTGCTTGCAAAATGTGGTGT+TGG | 0.532555 | 5_4:-34729219 | Msa0848790:CDS |
| TTTGCTTGCTCTTCACAATG+AGG | 0.533963 | 5_4:+34727557 | None:intergenic |
| CAATTTGGGCAAGCCTTGGT+AGG | 0.534551 | 5_4:+34730379 | None:intergenic |
| GTAGAAACTGAACATAATGA+AGG | 0.537204 | 5_4:-34727518 | Msa0848790:CDS |
| AGAAGCAACAGTTAGGTTTG+CGG | 0.539177 | 5_4:+34726913 | None:intergenic |
| ACTCTGCATTTGAAGGCTCA+AGG | 0.539581 | 5_4:+34727201 | None:intergenic |
| CTAGCTGAGCATAAATAGAA+AGG | 0.539748 | 5_4:+34727270 | None:intergenic |
| TTTAAGGTTTACCTGGGGAA+TGG | 0.539764 | 5_4:+34728550 | None:intergenic |
| TAGTGAATCACAAAATCTGT+TGG | 0.540122 | 5_4:-34727396 | Msa0848790:CDS |
| TTTCTTGTAACTATAAGGTG+TGG | 0.541947 | 5_4:-34726965 | Msa0848790:three_prime_UTR |
| TACCATCTCTAGTAGGAGAC+TGG | 0.544929 | 5_4:+34727321 | None:intergenic |
| TTCTTGTAACTATAAGGTGT+GGG | 0.553809 | 5_4:-34726964 | Msa0848790:three_prime_UTR |
| TAATTGCTCTGTGGAAGAAG+TGG | 0.556020 | 5_4:+34728999 | None:intergenic |
| GTTGTAAGGTTGTAAAAGAG+TGG | 0.556602 | 5_4:-34729299 | Msa0848790:intron |
| CAAATTACCTCCTGATCAGA+TGG | 0.556689 | 5_4:+34729246 | None:intergenic |
| AACTCATCAACGAAAGGATG+AGG | 0.560139 | 5_4:+34729186 | None:intergenic |
| AGGACCAGAGCATCTGAAGA+AGG | 0.560183 | 5_4:-34727249 | Msa0848790:CDS |
| GAAAGACACAGCGAGAAAGA+GGG | 0.561279 | 5_4:-34731248 | Msa0848790:five_prime_UTR |
| ATCAAGTCTCTCCTCTATGG+CGG | 0.563599 | 5_4:-34731181 | Msa0848790:exon |
| TGTAGAGAATGACACACCTT+CGG | 0.575337 | 5_4:-34727174 | Msa0848790:CDS |
| AGCCAGTCTCCTACTAGAGA+TGG | 0.577237 | 5_4:-34727323 | Msa0848790:CDS |
| ATTATGTTCAGTTTCTACCA+TGG | 0.577859 | 5_4:+34727523 | None:intergenic |
| TCCAGACAATTCATCTGAGG+AGG | 0.583627 | 5_4:+34727590 | None:intergenic |
| CAAGTCTCTCCTCTATGGCG+GGG | 0.593225 | 5_4:-34731179 | Msa0848790:intron |
| AGACACACCTGCCATTCCCC+AGG | 0.594387 | 5_4:-34728561 | Msa0848790:intron |
| TGTTACATACCCCGCCATAG+AGG | 0.594691 | 5_4:+34731170 | None:intergenic |
| AAGGTTGTAAAAGAGTGGCC+TGG | 0.594766 | 5_4:-34729294 | Msa0848790:CDS |
| AGCAAAAGATGATCTATCCA+TGG | 0.596236 | 5_4:-34727540 | Msa0848790:CDS |
| ATGCAGACCATCTTGGCTGG+TGG | 0.599205 | 5_4:-34730479 | Msa0848790:intron |
| ATGATAAACTCATCAACGAA+AGG | 0.599805 | 5_4:+34729180 | None:intergenic |
| CAACAGCAGCAAGTCAAACT+GGG | 0.602243 | 5_4:-34728716 | Msa0848790:CDS |
| TATATGAGTAGTGCAGGAGG+AGG | 0.609676 | 5_4:-34728836 | Msa0848790:CDS |
| AGAAATCTGCATCTCAGATG+AGG | 0.615799 | 5_4:+34726983 | None:intergenic |
| TGGCACTTGCTTGCAAAATG+TGG | 0.618127 | 5_4:-34729225 | Msa0848790:CDS |
| TAGAAACTGAACATAATGAA+GGG | 0.620128 | 5_4:-34727517 | Msa0848790:CDS |
| TCATCCAGACAATTCATCTG+AGG | 0.620597 | 5_4:+34727587 | None:intergenic |
| GTGATCTGGAAAATGTTACA+TGG | 0.621927 | 5_4:-34730411 | Msa0848790:CDS |
| TGAGCATAAATAGAAAGGCT+GGG | 0.624006 | 5_4:+34727275 | None:intergenic |
| ACAGAAGAGGATGAAAAGGA+TGG | 0.629598 | 5_4:-34728767 | Msa0848790:CDS |
| ATTTGATCCATCTGATCAGG+AGG | 0.636045 | 5_4:-34729253 | Msa0848790:CDS |
| AATTGCTCTGTGGAAGAAGT+GGG | 0.639626 | 5_4:+34729000 | None:intergenic |
| TACTGTCTTTCACTATAAGG+AGG | 0.644386 | 5_4:+34728605 | None:intergenic |
| ATATCATCTAGGAACAGAAG+AGG | 0.646141 | 5_4:-34728780 | Msa0848790:CDS |
| ATGGAAAAGCAATCCTACCA+AGG | 0.655385 | 5_4:-34730392 | Msa0848790:CDS |
| CTGTATATGAGTAGTGCAGG+AGG | 0.660155 | 5_4:-34728839 | Msa0848790:CDS |
| TAAACCAGTAATCTTGAATG+GGG | 0.660588 | 5_4:-34728891 | Msa0848790:CDS |
| AGGCTTATAATACTGGCACT+CGG | 0.668317 | 5_4:-34728976 | Msa0848790:CDS |
| TATAAGCCTTAATTGCTCTG+TGG | 0.669172 | 5_4:+34728990 | None:intergenic |
| TGACTTAGTCGAAACTCCGA+AGG | 0.670660 | 5_4:+34727158 | None:intergenic |
| TATAGCATTTGGTTACAACA+AGG | 0.688806 | 5_4:-34727029 | Msa0848790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTTTTATTTTT+TGG | - | chr5_4:34727109-34727128 | Msa0848790:intron | 0.0% |
| !!! | AATTTTTCAATATTTGTAAA+GGG | + | chr5_4:34728231-34728250 | None:intergenic | 10.0% |
| !!! | AAATTTTTCAATATTTGTAA+AGG | + | chr5_4:34728232-34728251 | None:intergenic | 10.0% |
| !! | TTAAAAACAAAAATCATTGT+TGG | - | chr5_4:34726746-34726765 | Msa0848790:three_prime_UTR | 15.0% |
| !!! | TTTTTCCTGATTATATTTTA+GGG | - | chr5_4:34727729-34727748 | Msa0848790:intron | 15.0% |
| !! | AACTATCAATATGATATATA+AGG | + | chr5_4:34728676-34728695 | None:intergenic | 15.0% |
| !!! | ACATTTTTGTTTATTAATCA+AGG | - | chr5_4:34730257-34730276 | Msa0848790:intron | 15.0% |
| !!! | ATTTGATAATGAAACATAGT+AGG | + | chr5_4:34726890-34726909 | None:intergenic | 20.0% |
| !!! | TTGTTTTAACTTCATGAATT+TGG | - | chr5_4:34727202-34727221 | Msa0848790:CDS | 20.0% |
| !! | ACATTTGGATAAAAACTAAA+TGG | - | chr5_4:34727225-34727244 | Msa0848790:CDS | 20.0% |
| !! | CATTTGGATAAAAACTAAAT+GGG | - | chr5_4:34727226-34727245 | Msa0848790:CDS | 20.0% |
| !!! | ATGTGTTTTCTATGTTTAAA+TGG | - | chr5_4:34727278-34727297 | Msa0848790:CDS | 20.0% |
| !!! | CTTTTTCCTGATTATATTTT+AGG | - | chr5_4:34727728-34727747 | Msa0848790:intron | 20.0% |
| !!! | TTACTTAACTGTAATTTTGA+CGG | - | chr5_4:34728523-34728542 | Msa0848790:intron | 20.0% |
| !!! | TTTTTTTTCTTTCTGTTGTA+AGG | - | chr5_4:34728714-34728733 | Msa0848790:CDS | 20.0% |
| !!! | AACAAGAAAAAATGGTTTTA+AGG | + | chr5_4:34729496-34729515 | None:intergenic | 20.0% |
| !!! | TCTTTGATAACAAGAAAAAA+TGG | + | chr5_4:34729504-34729523 | None:intergenic | 20.0% |
| !! | ATTAAAATCTAAATACTCAG+TGG | + | chr5_4:34729722-34729741 | None:intergenic | 20.0% |
| !!! | TCATTTAAGATAGGTTTTTA+TGG | - | chr5_4:34729758-34729777 | Msa0848790:intron | 20.0% |
| !!! | AGGTTTTGTTTTTTTTTTGA+AGG | - | chr5_4:34729807-34729826 | Msa0848790:intron | 20.0% |
| !! | TTTGTGTTTATATAGGAATT+TGG | - | chr5_4:34730960-34730979 | Msa0848790:intron | 20.0% |
| !! | TTCTGATTTGATTTATGAGA+TGG | - | chr5_4:34726947-34726966 | Msa0848790:three_prime_UTR | 25.0% |
| !! | TCTGATTTGATTTATGAGAT+GGG | - | chr5_4:34726948-34726967 | Msa0848790:three_prime_UTR | 25.0% |
| ! | TTAGGCATTTAATCAATATC+AGG | + | chr5_4:34727342-34727361 | None:intergenic | 25.0% |
| !! | AAATGCCTAAATCTGAAATA+TGG | - | chr5_4:34727352-34727371 | Msa0848790:CDS | 25.0% |
| !! | AACCAAAATAAAAAGTGCAT+CGG | - | chr5_4:34727587-34727606 | Msa0848790:CDS | 25.0% |
| ! | ATGTACCCTAAAATATAATC+AGG | + | chr5_4:34727737-34727756 | None:intergenic | 25.0% |
| !!! | TATTTTAGGGTACATTGTTA+TGG | - | chr5_4:34727742-34727761 | Msa0848790:intron | 25.0% |
| ! | ATCTATCAAGTACTAAACTA+TGG | + | chr5_4:34727786-34727805 | None:intergenic | 25.0% |
| ! | AATCCATTGTAAGTTAGTTA+AGG | - | chr5_4:34727806-34727825 | Msa0848790:intron | 25.0% |
| ! | ATCCATTGTAAGTTAGTTAA+GGG | - | chr5_4:34727807-34727826 | Msa0848790:intron | 25.0% |
| ! | AAAGCATATCTCCTATAAAT+AGG | - | chr5_4:34727858-34727877 | Msa0848790:intron | 25.0% |
| ! | ATATCTCCTATAAATAGGAA+TGG | - | chr5_4:34727863-34727882 | Msa0848790:intron | 25.0% |
| ! | TATCTCCTATAAATAGGAAT+GGG | - | chr5_4:34727864-34727883 | Msa0848790:intron | 25.0% |
| ! | TAAATCCCATTCCTATTTAT+AGG | + | chr5_4:34727872-34727891 | None:intergenic | 25.0% |
| ! | ATCTAATCCATTAATTCTGT+TGG | - | chr5_4:34728005-34728024 | Msa0848790:intron | 25.0% |
| !! | TCTTTTTCCAACAGAATTAA+TGG | + | chr5_4:34728015-34728034 | None:intergenic | 25.0% |
| ! | TAATTCTGTTGGAAAAAGAT+AGG | - | chr5_4:34728016-34728035 | Msa0848790:intron | 25.0% |
| ! | AATTCTGTTGGAAAAAGATA+GGG | - | chr5_4:34728017-34728036 | Msa0848790:intron | 25.0% |
| ! | GAAAAACAAAATTGCAAAAG+AGG | + | chr5_4:34728119-34728138 | None:intergenic | 25.0% |
| ! | ATAATACTGCGGTATATTAA+TGG | + | chr5_4:34728147-34728166 | None:intergenic | 25.0% |
| ! | AATTAGATGGAATAATACTG+CGG | + | chr5_4:34728158-34728177 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTAAGACATTTGT+AGG | + | chr5_4:34728573-34728592 | None:intergenic | 25.0% |
| !! | AATCCTGATCATGTATTTTT+CGG | + | chr5_4:34729082-34729101 | None:intergenic | 25.0% |
| !! | AAAATACATGATCAGGATTT+TGG | - | chr5_4:34729083-34729102 | Msa0848790:intron | 25.0% |
| ! | AAAAGGCTGTAAAAAGATTA+TGG | - | chr5_4:34729163-34729182 | Msa0848790:CDS | 25.0% |
| ! | AAAAGCTGAGAAAACTAATT+GGG | - | chr5_4:34729214-34729233 | Msa0848790:CDS | 25.0% |
| ! | TTATAGTGAAAGACAGTATT+CGG | - | chr5_4:34729427-34729446 | Msa0848790:intron | 25.0% |
| ! | CTATCTTAAATGATGTCTAA+AGG | + | chr5_4:34729751-34729770 | None:intergenic | 25.0% |
| !! | CTTTAGACATCATTTAAGAT+AGG | - | chr5_4:34729749-34729768 | Msa0848790:intron | 25.0% |
| !!! | TTTTTTTGAAGGATGAGAAA+AGG | - | chr5_4:34729818-34729837 | Msa0848790:intron | 25.0% |
| !!! | TAGGAGGGAAATTTTTTTTT+TGG | + | chr5_4:34729951-34729970 | None:intergenic | 25.0% |
| !!! | TATTAAAGCCATATTTCTAG+AGG | + | chr5_4:34730120-34730139 | None:intergenic | 25.0% |
| !!! | TAGAAATATGGCTTTAATAG+TGG | - | chr5_4:34730121-34730140 | Msa0848790:intron | 25.0% |
| ! | TGCATTATTAAAGCCATTAA+GGG | + | chr5_4:34730216-34730235 | None:intergenic | 25.0% |
| ! | TTGCATTATTAAAGCCATTA+AGG | + | chr5_4:34730217-34730236 | None:intergenic | 25.0% |
| ! | ATAAACAAAAATGTGCAGAA+TGG | + | chr5_4:34730251-34730270 | None:intergenic | 25.0% |
| !!! | CTAATTTTGGATTTGCTATA+AGG | - | chr5_4:34730308-34730327 | Msa0848790:intron | 25.0% |
| ! | ATAGAACACAAAAATAGATC+AGG | + | chr5_4:34730403-34730422 | None:intergenic | 25.0% |
| ! | TAGAAACTGAACATAATGAA+GGG | - | chr5_4:34730510-34730529 | Msa0848790:intron | 25.0% |
| ! | AATGAAAATAATGCTGATGA+TGG | - | chr5_4:34730542-34730561 | Msa0848790:intron | 25.0% |
| ! | ATTGAAAATAATCCTGATGA+TGG | - | chr5_4:34730593-34730612 | Msa0848790:intron | 25.0% |
| ! | TAAAAACTCATTGAGAACAT+GGG | + | chr5_4:34730904-34730923 | None:intergenic | 25.0% |
| ! | ATAAAAACTCATTGAGAACA+TGG | + | chr5_4:34730905-34730924 | None:intergenic | 25.0% |
| !! | ACGCATTTTTGTGTTTATAT+AGG | - | chr5_4:34730953-34730972 | Msa0848790:intron | 25.0% |
| ! | AACAAGGTAGTAAAGTAATA+TGG | - | chr5_4:34731014-34731033 | Msa0848790:intron | 25.0% |
| !! | CAAGCATATTATCTTCTTTT+TGG | - | chr5_4:34731213-34731232 | Msa0848790:five_prime_UTR | 25.0% |
| !!! | CACTTCAAGCATTTTTTTTT+TGG | - | chr5_4:34731272-34731291 | Msa0848790:five_prime_UTR | 25.0% |
| ! | ATTTGATTTATGAGATGGGT+TGG | - | chr5_4:34726952-34726971 | Msa0848790:three_prime_UTR | 30.0% |
| !! | GTTTGTGTTTTTGTTCAAGT+TGG | - | chr5_4:34727011-34727030 | Msa0848790:exon | 30.0% |
| !!! | TTGGTCAGTTTAGGTTTTTT+TGG | - | chr5_4:34727030-34727049 | Msa0848790:CDS | 30.0% |
| ACTAAGTGTAACTAATTCCT+TGG | - | chr5_4:34727156-34727175 | Msa0848790:CDS | 30.0% | |
| ! | TCCTTGGTTTAAAATTGACA+TGG | - | chr5_4:34727172-34727191 | Msa0848790:CDS | 30.0% |
| ! | ACCATGTCAATTTTAAACCA+AGG | + | chr5_4:34727176-34727195 | None:intergenic | 30.0% |
| ! | TGGTTTAAAATTGACATGGT+TGG | - | chr5_4:34727176-34727195 | Msa0848790:CDS | 30.0% |
| ACTTCATGAATTTGGACATT+TGG | - | chr5_4:34727210-34727229 | Msa0848790:CDS | 30.0% | |
| CAAGTCCATATTTCAGATTT+AGG | + | chr5_4:34727360-34727379 | None:intergenic | 30.0% | |
| ! | GATAATGCTCTTAGATTTTG+TGG | - | chr5_4:34727379-34727398 | Msa0848790:CDS | 30.0% |
| TATTAAGTAAGAGATTCCTC+TGG | + | chr5_4:34727448-34727467 | None:intergenic | 30.0% | |
| !! | TTAGATTATGTGTGTTGACT+AGG | - | chr5_4:34727481-34727500 | Msa0848790:CDS | 30.0% |
| ! | ACCAAAATAAAAAGTGCATC+GGG | - | chr5_4:34727588-34727607 | Msa0848790:CDS | 30.0% |
| CAATAGTATGCTGACAATTT+GGG | + | chr5_4:34727665-34727684 | None:intergenic | 30.0% | |
| TCAATAGTATGCTGACAATT+TGG | + | chr5_4:34727666-34727685 | None:intergenic | 30.0% | |
| TCCATTGTAAGTTAGTTAAG+GGG | - | chr5_4:34727808-34727827 | Msa0848790:intron | 30.0% | |
| AGTTAGTTAAGGGGTTATAT+AGG | - | chr5_4:34727817-34727836 | Msa0848790:intron | 30.0% | |
| TAGGAATGGGATTTATATTG+AGG | - | chr5_4:34727877-34727896 | Msa0848790:intron | 30.0% | |
| AGGAATGGGATTTATATTGA+GGG | - | chr5_4:34727878-34727897 | Msa0848790:intron | 30.0% | |
| GCAATTGATGAGATTAGAAT+CGG | - | chr5_4:34727904-34727923 | Msa0848790:intron | 30.0% | |
| GGGTTCAAACAAAAATTAGA+TGG | + | chr5_4:34728171-34728190 | None:intergenic | 30.0% | |
| !! | GTTTTTAAGCGTGTATTAGA+TGG | - | chr5_4:34728311-34728330 | Msa0848790:intron | 30.0% |
| AAATGGTCTATCATTAGACT+TGG | - | chr5_4:34728361-34728380 | Msa0848790:intron | 30.0% | |
| TTATGAGATCGTTTGAGAAA+AGG | - | chr5_4:34728398-34728417 | Msa0848790:intron | 30.0% | |
| AGGAACTAAAATATACAGCA+AGG | + | chr5_4:34728553-34728572 | None:intergenic | 30.0% | |
| TTAGTTCCTACAAATGTCTT+AGG | - | chr5_4:34728564-34728583 | Msa0848790:CDS | 30.0% | |
| ATGATAAACTCATCAACGAA+AGG | + | chr5_4:34728850-34728869 | None:intergenic | 30.0% | |
| ATTACTCTTGAAGTGAATGA+TGG | - | chr5_4:34728868-34728887 | Msa0848790:CDS | 30.0% | |
| TAAGCTTCAATGAAAATGTC+AGG | - | chr5_4:34728981-34729000 | Msa0848790:CDS | 30.0% | |
| GCAATTAAGGCTTATAATAC+TGG | - | chr5_4:34729044-34729063 | Msa0848790:intron | 30.0% | |
| ACTAAACCAGTAATCTTGAA+TGG | - | chr5_4:34729134-34729153 | Msa0848790:CDS | 30.0% | |
| CTAAACCAGTAATCTTGAAT+GGG | - | chr5_4:34729135-34729154 | Msa0848790:CDS | 30.0% | |
| TAAACCAGTAATCTTGAATG+GGG | - | chr5_4:34729136-34729155 | Msa0848790:CDS | 30.0% | |
| GAAAAGCTGAGAAAACTAAT+TGG | - | chr5_4:34729213-34729232 | Msa0848790:CDS | 30.0% | |
| GTTATGCATCAATATCATCT+AGG | - | chr5_4:34729236-34729255 | Msa0848790:CDS | 30.0% | |
| TGAAGCAACAATAACAAAAG+TGG | - | chr5_4:34729367-34729386 | Msa0848790:intron | 30.0% | |
| AACAATAACAAAAGTGGATC+CGG | - | chr5_4:34729373-34729392 | Msa0848790:intron | 30.0% | |
| GAATACTGTCTTTCACTATA+AGG | + | chr5_4:34729428-34729447 | None:intergenic | 30.0% | |
| !!! | AATGGTTTTAAGGTTTACCT+GGG | + | chr5_4:34729486-34729505 | None:intergenic | 30.0% |
| !!! | AAATGGTTTTAAGGTTTACC+TGG | + | chr5_4:34729487-34729506 | None:intergenic | 30.0% |
| AATCTAAATACTCAGTGGTT+TGG | + | chr5_4:34729717-34729736 | None:intergenic | 30.0% | |
| !!! | GGAAATTTTTTTTTTGGTGG+TGG | + | chr5_4:34729945-34729964 | None:intergenic | 30.0% |
| !!! | GAGGGAAATTTTTTTTTTGG+TGG | + | chr5_4:34729948-34729967 | None:intergenic | 30.0% |
| ! | TTTCACATCCTCTAGAAATA+TGG | - | chr5_4:34730109-34730128 | Msa0848790:intron | 30.0% |
| AACACACAAAACAACTTGTA+AGG | + | chr5_4:34730170-34730189 | None:intergenic | 30.0% | |
| !! | TTGTTTTGTGTGTTTGAGTT+AGG | - | chr5_4:34730176-34730195 | Msa0848790:intron | 30.0% |
| ATTATGTTCAGTTTCTACCA+TGG | + | chr5_4:34730507-34730526 | None:intergenic | 30.0% | |
| GTAGAAACTGAACATAATGA+AGG | - | chr5_4:34730509-34730528 | Msa0848790:intron | 30.0% | |
| TAGTGAATCACAAAATCTGT+TGG | - | chr5_4:34730631-34730650 | Msa0848790:intron | 30.0% | |
| !! | CAAGATAGCTTTATAGCATT+TGG | - | chr5_4:34730987-34731006 | Msa0848790:intron | 30.0% |
| TATAGCATTTGGTTACAACA+AGG | - | chr5_4:34730998-34731017 | Msa0848790:intron | 30.0% | |
| GCAGATTTCTTGTAACTATA+AGG | - | chr5_4:34731057-34731076 | Msa0848790:intron | 30.0% | |
| TTTCTTGTAACTATAAGGTG+TGG | - | chr5_4:34731062-34731081 | Msa0848790:intron | 30.0% | |
| TTCTTGTAACTATAAGGTGT+GGG | - | chr5_4:34731063-34731082 | Msa0848790:intron | 30.0% | |
| !!! | CCTACTTTTCAGGTTGTTTT+AGG | + | chr5_4:34726814-34726833 | None:intergenic | 35.0% |
| CCTAAAACAACCTGAAAAGT+AGG | - | chr5_4:34726811-34726830 | Msa0848790:three_prime_UTR | 35.0% | |
| !! | TAGCACAAAACCTACTTTTC+AGG | + | chr5_4:34726824-34726843 | None:intergenic | 35.0% |
| !! | TTGTTCAAGTTGGTCAGTTT+AGG | - | chr5_4:34727021-34727040 | Msa0848790:CDS | 35.0% |
| ATAAACATCGTGTCGTAAAC+CGG | + | chr5_4:34727309-34727328 | None:intergenic | 35.0% | |
| TTTCTATATGCAGACCATCT+TGG | - | chr5_4:34727541-34727560 | Msa0848790:CDS | 35.0% | |
| !! | TCCCGATGCACTTTTTATTT+TGG | + | chr5_4:34727592-34727611 | None:intergenic | 35.0% |
| GTGATCTGGAAAATGTTACA+TGG | - | chr5_4:34727616-34727635 | Msa0848790:intron | 35.0% | |
| TAGGGTACATTGTTATGGAA+TGG | - | chr5_4:34727747-34727766 | Msa0848790:intron | 35.0% | |
| AGGGTACATTGTTATGGAAT+GGG | - | chr5_4:34727748-34727767 | Msa0848790:intron | 35.0% | |
| ACCCCTTAACTAACTTACAA+TGG | + | chr5_4:34727812-34727831 | None:intergenic | 35.0% | |
| TAAGGGGTTATATAGGTAGT+TGG | - | chr5_4:34727824-34727843 | Msa0848790:intron | 35.0% | |
| ATGGGATTTATATTGAGGGT+AGG | - | chr5_4:34727882-34727901 | Msa0848790:intron | 35.0% | |
| GATTAGAATCGGAAAAGTCT+TGG | - | chr5_4:34727915-34727934 | Msa0848790:intron | 35.0% | |
| TCTTGGTCTCTTGATATCTA+GGG | - | chr5_4:34727932-34727951 | Msa0848790:intron | 35.0% | |
| !! | TCATCGAGAAGTATTGTTTG+TGG | - | chr5_4:34728041-34728060 | Msa0848790:intron | 35.0% |
| !! | CATCGAGAAGTATTGTTTGT+GGG | - | chr5_4:34728042-34728061 | Msa0848790:intron | 35.0% |
| !! | ATCGAGAAGTATTGTTTGTG+GGG | - | chr5_4:34728043-34728062 | Msa0848790:intron | 35.0% |
| AATATTTGTAAAGGGCCACA+TGG | + | chr5_4:34728223-34728242 | None:intergenic | 35.0% | |
| TTTAAGCGTGTATTAGATGG+AGG | - | chr5_4:34728314-34728333 | Msa0848790:intron | 35.0% | |
| TCAAACCATCTGGATTCAAA+TGG | - | chr5_4:34728344-34728363 | Msa0848790:intron | 35.0% | |
| ATAGACCATTTGAATCCAGA+TGG | + | chr5_4:34728352-34728371 | None:intergenic | 35.0% | |
| GATCTCATAATGTCCTATGA+TGG | + | chr5_4:34728388-34728407 | None:intergenic | 35.0% | |
| AGATTGCAGGTTAAATAGGT+GGG | + | chr5_4:34728443-34728462 | None:intergenic | 35.0% | |
| CAACAGATTGCAGGTTAAAT+AGG | + | chr5_4:34728447-34728466 | None:intergenic | 35.0% | |
| AATCTGTTGTTACATCGGAT+GGG | - | chr5_4:34728458-34728477 | Msa0848790:intron | 35.0% | |
| !! | TTGACATTTAGCTTGTGAGT+TGG | + | chr5_4:34728493-34728512 | None:intergenic | 35.0% |
| GTTGTAAGGTTGTAAAAGAG+TGG | - | chr5_4:34728728-34728747 | Msa0848790:CDS | 35.0% | |
| ! | GGATCAAATTTGACACCTTT+TGG | + | chr5_4:34728763-34728782 | None:intergenic | 35.0% |
| CAAATTTGATCCATCTGATC+AGG | - | chr5_4:34728771-34728790 | Msa0848790:CDS | 35.0% | |
| TATAAGCCTTAATTGCTCTG+TGG | + | chr5_4:34729040-34729059 | None:intergenic | 35.0% | |
| ATCTTGAATGGGGTTCAAAA+AGG | - | chr5_4:34729146-34729165 | Msa0848790:CDS | 35.0% | |
| ATATCATCTAGGAACAGAAG+AGG | - | chr5_4:34729247-34729266 | Msa0848790:CDS | 35.0% | |
| ! | ATTGTTGCTTCAATAGCTTC+AGG | + | chr5_4:34729359-34729378 | None:intergenic | 35.0% |
| TACTGTCTTTCACTATAAGG+AGG | + | chr5_4:34729425-34729444 | None:intergenic | 35.0% | |
| !!! | ATGGTTTTAAGGTTTACCTG+GGG | + | chr5_4:34729485-34729504 | None:intergenic | 35.0% |
| AGTTCATGGCAAGTCATAAT+AGG | + | chr5_4:34729540-34729559 | None:intergenic | 35.0% | |
| GATAATGAGTACTCAGTAGT+AGG | - | chr5_4:34729604-34729623 | Msa0848790:intron | 35.0% | |
| ! | CAAAACCTTTTCTCACTAGT+GGG | + | chr5_4:34729795-34729814 | None:intergenic | 35.0% |
| ! | ACAAAACCTTTTCTCACTAG+TGG | + | chr5_4:34729796-34729815 | None:intergenic | 35.0% |
| TGCATAATCTATGCAATGTC+CGG | - | chr5_4:34729905-34729924 | Msa0848790:intron | 35.0% | |
| !!! | ATTTTTTTTTTGGTGGTGGC+CGG | + | chr5_4:34729941-34729960 | None:intergenic | 35.0% |
| !! | CTATAGGTGGATTGAAACTA+AGG | + | chr5_4:34730002-34730021 | None:intergenic | 35.0% |
| CTTAGTTTCAATCCACCTAT+AGG | - | chr5_4:34730000-34730019 | Msa0848790:intron | 35.0% | |
| !! | TGGCTTTAATAGTGGAGATA+AGG | - | chr5_4:34730129-34730148 | Msa0848790:intron | 35.0% |
| ! | TTGTAAGGTACAGGCTTTTA+AGG | + | chr5_4:34730155-34730174 | None:intergenic | 35.0% |
| CAAAACAACTTGTAAGGTAC+AGG | + | chr5_4:34730164-34730183 | None:intergenic | 35.0% | |
| ! | AAATTAGAAGTGTAGCCAAG+TGG | + | chr5_4:34730295-34730314 | None:intergenic | 35.0% |
| ! | CTTGGCTACACTTCTAATTT+TGG | - | chr5_4:34730295-34730314 | Msa0848790:intron | 35.0% |
| AGCAAAAGATGATCTATCCA+TGG | - | chr5_4:34730487-34730506 | Msa0848790:intron | 35.0% | |
| ! | ATTCACTATCCCACCATTTT+TGG | + | chr5_4:34730619-34730638 | None:intergenic | 35.0% |
| TCATCTTTACCATCTCTAGT+AGG | + | chr5_4:34730716-34730735 | None:intergenic | 35.0% | |
| TGAGCATAAATAGAAAGGCT+GGG | + | chr5_4:34730755-34730774 | None:intergenic | 35.0% | |
| CTAGCTGAGCATAAATAGAA+AGG | + | chr5_4:34730760-34730779 | None:intergenic | 35.0% | |
| CTTTCTATTTATGCTCAGCT+AGG | - | chr5_4:34730758-34730777 | Msa0848790:intron | 35.0% | |
| ACATTTGACTCTGCATTTGA+AGG | + | chr5_4:34730836-34730855 | None:intergenic | 35.0% | |
| CAAACAAAGAAGCAACAGTT+AGG | + | chr5_4:34731124-34731143 | None:intergenic | 35.0% | |
| ! | TGCTTCTTTGTTTGACAACT+TGG | - | chr5_4:34731130-34731149 | Msa0848790:intron | 35.0% |
| ! | GCTTCTTTGTTTGACAACTT+GGG | - | chr5_4:34731131-34731150 | Msa0848790:intron | 35.0% |
| ! | ACAACTTGGGCTGTAATTTT+TGG | - | chr5_4:34731144-34731163 | Msa0848790:intron | 35.0% |
| ATCATCAAGTCTCTCCTCTA+TGG | - | chr5_4:34726843-34726862 | Msa0848790:three_prime_UTR | 40.0% | |
| CTATGTTTAAATGGCGTTGC+CGG | - | chr5_4:34727287-34727306 | Msa0848790:CDS | 40.0% | |
| CATCTATGTAGTAAGACCAG+AGG | - | chr5_4:34727429-34727448 | Msa0848790:CDS | 40.0% | |
| ATGGAAAAGCAATCCTACCA+AGG | - | chr5_4:34727635-34727654 | Msa0848790:intron | 40.0% | |
| GGGTACATTGTTATGGAATG+GGG | - | chr5_4:34727749-34727768 | Msa0848790:intron | 40.0% | |
| GTCTTGGTCTCTTGATATCT+AGG | - | chr5_4:34727931-34727950 | Msa0848790:intron | 40.0% | |
| !! | TCGAGAAGTATTGTTTGTGG+GGG | - | chr5_4:34728044-34728063 | Msa0848790:intron | 40.0% |
| GTTTGAACCCATCAGTTACT+TGG | - | chr5_4:34728181-34728200 | Msa0848790:intron | 40.0% | |
| AACCCATCAGTTACTTGGTA+GGG | - | chr5_4:34728186-34728205 | Msa0848790:intron | 40.0% | |
| AGGATAGATGTCAAACCATC+TGG | - | chr5_4:34728334-34728353 | Msa0848790:intron | 40.0% | |
| ! | CATTAGACTTGGTCCATCAT+AGG | - | chr5_4:34728372-34728391 | Msa0848790:intron | 40.0% |
| GATTGCAGGTTAAATAGGTG+GGG | + | chr5_4:34728442-34728461 | None:intergenic | 40.0% | |
| CAGATTGCAGGTTAAATAGG+TGG | + | chr5_4:34728444-34728463 | None:intergenic | 40.0% | |
| CCTGCAATCTGTTGTTACAT+CGG | - | chr5_4:34728453-34728472 | Msa0848790:intron | 40.0% | |
| CAATCTGTTGTTACATCGGA+TGG | - | chr5_4:34728457-34728476 | Msa0848790:intron | 40.0% | |
| ATCTGTTGTTACATCGGATG+GGG | - | chr5_4:34728459-34728478 | Msa0848790:intron | 40.0% | |
| ATTTGATCCATCTGATCAGG+AGG | - | chr5_4:34728774-34728793 | Msa0848790:CDS | 40.0% | |
| CAAATTACCTCCTGATCAGA+TGG | + | chr5_4:34728784-34728803 | None:intergenic | 40.0% | |
| CATCTGATCAGGAGGTAATT+TGG | - | chr5_4:34728782-34728801 | Msa0848790:CDS | 40.0% | |
| TTGCTTGCAAAATGTGGTGT+TGG | - | chr5_4:34728808-34728827 | Msa0848790:CDS | 40.0% | |
| AACTCATCAACGAAAGGATG+AGG | + | chr5_4:34728844-34728863 | None:intergenic | 40.0% | |
| ATGTCAGGTGTTAAGCAAGA+TGG | - | chr5_4:34728996-34729015 | Msa0848790:CDS | 40.0% | |
| AATTGCTCTGTGGAAGAAGT+GGG | + | chr5_4:34729030-34729049 | None:intergenic | 40.0% | |
| TAATTGCTCTGTGGAAGAAG+TGG | + | chr5_4:34729031-34729050 | None:intergenic | 40.0% | |
| CTTCTTCCACAGAGCAATTA+AGG | - | chr5_4:34729031-34729050 | Msa0848790:intron | 40.0% | |
| AGGCTTATAATACTGGCACT+CGG | - | chr5_4:34729051-34729070 | Msa0848790:intron | 40.0% | |
| TGAACCCCATTCAAGATTAC+TGG | + | chr5_4:34729143-34729162 | None:intergenic | 40.0% | |
| GTTCTGTATATGAGTAGTGC+AGG | - | chr5_4:34729185-34729204 | Msa0848790:CDS | 40.0% | |
| AGGAACAGAAGAGGATGAAA+AGG | - | chr5_4:34729256-34729275 | Msa0848790:CDS | 40.0% | |
| ACAGAAGAGGATGAAAAGGA+TGG | - | chr5_4:34729260-34729279 | Msa0848790:CDS | 40.0% | |
| CAGTATTCGGATGTAGATCT+AGG | - | chr5_4:34729440-34729459 | Msa0848790:intron | 40.0% | |
| ! | TTTAAGGTTTACCTGGGGAA+TGG | + | chr5_4:34729480-34729499 | None:intergenic | 40.0% |
| ACACTACACACTAGAGTTCA+TGG | + | chr5_4:34729554-34729573 | None:intergenic | 40.0% | |
| TTAAGCCCACTAGTGAGAAA+AGG | - | chr5_4:34729787-34729806 | Msa0848790:intron | 40.0% | |
| TGAGCTTAGCTCAGTTTGTA+GGG | - | chr5_4:34729878-34729897 | Msa0848790:intron | 40.0% | |
| GCATAATCTATGCAATGTCC+GGG | - | chr5_4:34729906-34729925 | Msa0848790:intron | 40.0% | |
| CATAATCTATGCAATGTCCG+GGG | - | chr5_4:34729907-34729926 | Msa0848790:intron | 40.0% | |
| !!! | TTTTTTTTTTGGTGGTGGCC+GGG | + | chr5_4:34729940-34729959 | None:intergenic | 40.0% |
| CTGTAGTATCTTTCTTCTGC+TGG | - | chr5_4:34730061-34730080 | Msa0848790:intron | 40.0% | |
| ACTTCAACAGTCTCCCTTAA+TGG | - | chr5_4:34730200-34730219 | Msa0848790:intron | 40.0% | |
| TCATCCAGACAATTCATCTG+AGG | + | chr5_4:34730443-34730462 | None:intergenic | 40.0% | |
| TTTGCTTGCTCTTCACAATG+AGG | + | chr5_4:34730473-34730492 | None:intergenic | 40.0% | |
| !! | ATGCTGATGATGGCCAAAAA+TGG | - | chr5_4:34730552-34730571 | Msa0848790:intron | 40.0% |
| ! | CTGTTCCTTCACACCATTTT+TGG | + | chr5_4:34730568-34730587 | None:intergenic | 40.0% |
| !! | ATCCTGATGATGGCCAAAAA+TGG | - | chr5_4:34730603-34730622 | Msa0848790:intron | 40.0% |
| !! | TGATGATGGCCAAAAATGGT+GGG | - | chr5_4:34730556-34730575 | Msa0848790:intron | 40.0% |
| TCTGTTGGATTCACAACAAC+TGG | - | chr5_4:34730646-34730665 | Msa0848790:intron | 40.0% | |
| CATAAATAGAAAGGCTGGGT+TGG | + | chr5_4:34730751-34730770 | None:intergenic | 40.0% | |
| CTGAGCATAAATAGAAAGGC+TGG | + | chr5_4:34730756-34730775 | None:intergenic | 40.0% | |
| ATATCCTTCTTCAGATGCTC+TGG | + | chr5_4:34730785-34730804 | None:intergenic | 40.0% | |
| TGTAGAGAATGACACACCTT+CGG | - | chr5_4:34730853-34730872 | Msa0848790:intron | 40.0% | |
| GGAGTTTCGACTAAGTCAAT+TGG | - | chr5_4:34730874-34730893 | Msa0848790:intron | 40.0% | |
| AGAAATCTGCATCTCAGATG+AGG | + | chr5_4:34731047-34731066 | None:intergenic | 40.0% | |
| AGAAGCAACAGTTAGGTTTG+CGG | + | chr5_4:34731117-34731136 | None:intergenic | 40.0% | |
| AGAAAGACACAGCGAGAAAG+AGG | - | chr5_4:34726778-34726797 | Msa0848790:three_prime_UTR | 45.0% | |
| GAAAGACACAGCGAGAAAGA+GGG | - | chr5_4:34726779-34726798 | Msa0848790:three_prime_UTR | 45.0% | |
| ATCAAGTCTCTCCTCTATGG+CGG | - | chr5_4:34726846-34726865 | Msa0848790:three_prime_UTR | 45.0% | |
| TATATGCAGACCATCTTGGC+TGG | - | chr5_4:34727545-34727564 | Msa0848790:CDS | 45.0% | |
| !! | CGAGAAGTATTGTTTGTGGG+GGG | - | chr5_4:34728045-34728064 | Msa0848790:intron | 45.0% |
| GAACCCATCAGTTACTTGGT+AGG | - | chr5_4:34728185-34728204 | Msa0848790:intron | 45.0% | |
| ACCCATCAGTTACTTGGTAG+GGG | - | chr5_4:34728187-34728206 | Msa0848790:intron | 45.0% | |
| TCCCCTACCAAGTAACTGAT+GGG | + | chr5_4:34728191-34728210 | None:intergenic | 45.0% | |
| ATCCCCTACCAAGTAACTGA+TGG | + | chr5_4:34728192-34728211 | None:intergenic | 45.0% | |
| CCGATGTAACAACAGATTGC+AGG | + | chr5_4:34728456-34728475 | None:intergenic | 45.0% | |
| TTGTTACATCGGATGGGGTT+TGG | - | chr5_4:34728464-34728483 | Msa0848790:intron | 45.0% | |
| AAGGTTGTAAAAGAGTGGCC+TGG | - | chr5_4:34728733-34728752 | Msa0848790:CDS | 45.0% | |
| ! | TTGACACCTTTTGGCAAACC+AGG | + | chr5_4:34728754-34728773 | None:intergenic | 45.0% |
| TGGCACTTGCTTGCAAAATG+TGG | - | chr5_4:34728802-34728821 | Msa0848790:CDS | 45.0% | |
| ACTCATCCTCAAAACTTGCC+AGG | - | chr5_4:34728901-34728920 | Msa0848790:CDS | 45.0% | |
| ATCCTCAAAACTTGCCAGGT+TGG | - | chr5_4:34728905-34728924 | Msa0848790:CDS | 45.0% | |
| TAAAACGCAAGTCACCAACC+TGG | + | chr5_4:34728922-34728941 | None:intergenic | 45.0% | |
| GCGCCGAAAAATACATGATC+AGG | - | chr5_4:34729076-34729095 | Msa0848790:intron | 45.0% | |
| !! | TTCTTCCAGTTTTGTGCCAG+CGG | + | chr5_4:34729115-34729134 | None:intergenic | 45.0% |
| CTGTATATGAGTAGTGCAGG+AGG | - | chr5_4:34729188-34729207 | Msa0848790:CDS | 45.0% | |
| TATATGAGTAGTGCAGGAGG+AGG | - | chr5_4:34729191-34729210 | Msa0848790:CDS | 45.0% | |
| CAACAGCAGCAAGTCAAACT+GGG | - | chr5_4:34729311-34729330 | Msa0848790:intron | 45.0% | |
| GCAAGTCAAACTGGGTGATA+AGG | - | chr5_4:34729319-34729338 | Msa0848790:intron | 45.0% | |
| GTCACAGATTTGGGAGTAAC+CGG | + | chr5_4:34729395-34729414 | None:intergenic | 45.0% | |
| CTTTCACTATAAGGAGGCTC+AGG | + | chr5_4:34729419-34729438 | None:intergenic | 45.0% | |
| GTGAGCTTAGCTCAGTTTGT+AGG | - | chr5_4:34729877-34729896 | Msa0848790:intron | 45.0% | |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | + | chr5_4:34729939-34729958 | None:intergenic | 45.0% |
| ACAGTACGTACATGCTAGGA+GGG | + | chr5_4:34729966-34729985 | None:intergenic | 45.0% | |
| CAACACAGTACGTACATGCT+AGG | + | chr5_4:34729970-34729989 | None:intergenic | 45.0% | |
| CTAGCATGTACGTACTGTGT+TGG | - | chr5_4:34729968-34729987 | Msa0848790:intron | 45.0% | |
| CCACCTATAGGCCTTAATTG+CGG | - | chr5_4:34730012-34730031 | Msa0848790:intron | 45.0% | |
| ATGCCGCAATTAAGGCCTAT+AGG | + | chr5_4:34730018-34730037 | None:intergenic | 45.0% | |
| GCTCAAAGATGCCGCAATTA+AGG | + | chr5_4:34730026-34730045 | None:intergenic | 45.0% | |
| ! | AGGAGTGTAACATAGCCACT+TGG | - | chr5_4:34730277-34730296 | Msa0848790:intron | 45.0% |
| CAATTCATCTGAGGAGGCTT+CGG | + | chr5_4:34730434-34730453 | None:intergenic | 45.0% | |
| TCCAGACAATTCATCTGAGG+AGG | + | chr5_4:34730440-34730459 | None:intergenic | 45.0% | |
| GATGGCCAAAAATGGTGTGA+AGG | - | chr5_4:34730560-34730579 | Msa0848790:intron | 45.0% | |
| !!! | CACCATTTTTGGCCATCATC+AGG | + | chr5_4:34730557-34730576 | None:intergenic | 45.0% |
| !! | CTGATGATGGCCAAAAATGG+TGG | - | chr5_4:34730555-34730574 | Msa0848790:intron | 45.0% |
| TACCATCTCTAGTAGGAGAC+TGG | + | chr5_4:34730709-34730728 | None:intergenic | 45.0% | |
| ACTCTGCATTTGAAGGCTCA+AGG | + | chr5_4:34730829-34730848 | None:intergenic | 45.0% | |
| TGACTTAGTCGAAACTCCGA+AGG | + | chr5_4:34730872-34730891 | None:intergenic | 45.0% | |
| GAAGCAACAGTTAGGTTTGC+GGG | + | chr5_4:34731116-34731135 | None:intergenic | 45.0% | |
| TCAAGTCTCTCCTCTATGGC+GGG | - | chr5_4:34726847-34726866 | Msa0848790:three_prime_UTR | 50.0% | |
| TGTTACATACCCCGCCATAG+AGG | + | chr5_4:34726860-34726879 | None:intergenic | 50.0% | |
| ! | CTTTTGTCCACCAGCCAAGA+TGG | + | chr5_4:34727558-34727577 | None:intergenic | 50.0% |
| CAATTTGGGCAAGCCTTGGT+AGG | + | chr5_4:34727651-34727670 | None:intergenic | 50.0% | |
| CTGACAATTTGGGCAAGCCT+TGG | + | chr5_4:34727655-34727674 | None:intergenic | 50.0% | |
| ATTGTTTGTGGGGGGCCATT+TGG | - | chr5_4:34728053-34728072 | Msa0848790:intron | 50.0% | |
| CTCTACCAGACCAAGCCAAA+TGG | + | chr5_4:34728071-34728090 | None:intergenic | 50.0% | |
| ! | AGGGGATTTTGAGCACCATG+TGG | - | chr5_4:34728205-34728224 | Msa0848790:intron | 50.0% |
| ! | CACCAACCTGGCAAGTTTTG+AGG | + | chr5_4:34728910-34728929 | None:intergenic | 50.0% |
| !! | CCAGTTTGACTTGCTGCTGT+TGG | + | chr5_4:34729313-34729332 | None:intergenic | 50.0% |
| CCAACAGCAGCAAGTCAAAC+TGG | - | chr5_4:34729310-34729329 | Msa0848790:intron | 50.0% | |
| GGCTCAGGAGTCACAGATTT+GGG | + | chr5_4:34729404-34729423 | None:intergenic | 50.0% | |
| AGGCTCAGGAGTCACAGATT+TGG | + | chr5_4:34729405-34729424 | None:intergenic | 50.0% | |
| CAAACTGAGCTAAGCTCACG+AGG | + | chr5_4:34729876-34729895 | None:intergenic | 50.0% | |
| CACAGTACGTACATGCTAGG+AGG | + | chr5_4:34729967-34729986 | None:intergenic | 50.0% | |
| CCGCAATTAAGGCCTATAGG+TGG | + | chr5_4:34730015-34730034 | None:intergenic | 50.0% | |
| GCCTCCTCAGATGAATTGTC+TGG | - | chr5_4:34730436-34730455 | Msa0848790:CDS | 50.0% | |
| AGCCAGTCTCCTACTAGAGA+TGG | - | chr5_4:34730704-34730723 | Msa0848790:intron | 50.0% | |
| ! | AGGACCAGAGCATCTGAAGA+AGG | - | chr5_4:34730778-34730797 | Msa0848790:intron | 50.0% |
| CAAGTCTCTCCTCTATGGCG+GGG | - | chr5_4:34726848-34726867 | Msa0848790:three_prime_UTR | 55.0% | |
| ATGCAGACCATCTTGGCTGG+TGG | - | chr5_4:34727548-34727567 | Msa0848790:CDS | 55.0% | |
| ! | TGCATCGGGAGCATGTGATC+TGG | - | chr5_4:34727602-34727621 | Msa0848790:intron | 55.0% |
| ! | GAGTGGCCTGGTTTGCCAAA+AGG | - | chr5_4:34728745-34728764 | Msa0848790:CDS | 55.0% |
| !!! | AGGATTTTGGTGACGTCCGC+TGG | - | chr5_4:34729096-34729115 | Msa0848790:intron | 55.0% |
| AGGTTTACCTGGGGAATGGC+AGG | + | chr5_4:34729476-34729495 | None:intergenic | 55.0% | |
| AGCTCACGAGGACGCTATGA+GGG | + | chr5_4:34729864-34729883 | None:intergenic | 55.0% | |
| AAGCTCACGAGGACGCTATG+AGG | + | chr5_4:34729865-34729884 | None:intergenic | 55.0% | |
| AATGTCCGGGGTTCAAACCC+CGG | - | chr5_4:34729919-34729938 | Msa0848790:intron | 55.0% | |
| TTGTGGGGGGCCATTTGGCT+TGG | - | chr5_4:34728058-34728077 | Msa0848790:intron | 60.0% | |
| GACGTCCGCTGGCACAAAAC+TGG | - | chr5_4:34729107-34729126 | Msa0848790:intron | 60.0% | |
| AGACACACCTGCCATTCCCC+AGG | - | chr5_4:34729466-34729485 | Msa0848790:intron | 60.0% | |
| !! | GGGGGCCATTTGGCTTGGTC+TGG | - | chr5_4:34728063-34728082 | Msa0848790:intron | 65.0% |
| GGTGGCCGGGGTTTGAACCC+CGG | + | chr5_4:34729927-34729946 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 34726728 | 34731321 | 34726728 | ID=Msa0848790;Name=Msa0848790 |
| chr5_4 | mRNA | 34726728 | 34731321 | 34726728 | ID=Msa0848790-mRNA-1;Parent=Msa0848790;Name=Msa0848790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=134|1|1|1|1|1|6|290|445 |
| chr5_4 | exon | 34726728 | 34727074 | 34726728 | ID=Msa0848790-mRNA-1:exon:11711;Parent=Msa0848790-mRNA-1 |
| chr5_4 | exon | 34727154 | 34727612 | 34727154 | ID=Msa0848790-mRNA-1:exon:11710;Parent=Msa0848790-mRNA-1 |
| chr5_4 | exon | 34728562 | 34729046 | 34728562 | ID=Msa0848790-mRNA-1:exon:11709;Parent=Msa0848790-mRNA-1 |
| chr5_4 | exon | 34729127 | 34729313 | 34729127 | ID=Msa0848790-mRNA-1:exon:11708;Parent=Msa0848790-mRNA-1 |
| chr5_4 | exon | 34730354 | 34730495 | 34730354 | ID=Msa0848790-mRNA-1:exon:11707;Parent=Msa0848790-mRNA-1 |
| chr5_4 | exon | 34731180 | 34731321 | 34731180 | ID=Msa0848790-mRNA-1:exon:11706;Parent=Msa0848790-mRNA-1 |
| chr5_4 | five_prime_UTR | 34731188 | 34731321 | 34731188 | ID=Msa0848790-mRNA-1:five_prime_utr;Parent=Msa0848790-mRNA-1 |
| chr5_4 | CDS | 34731180 | 34731187 | 34731180 | ID=Msa0848790-mRNA-1:cds;Parent=Msa0848790-mRNA-1 |
| chr5_4 | CDS | 34730354 | 34730495 | 34730354 | ID=Msa0848790-mRNA-1:cds;Parent=Msa0848790-mRNA-1 |
| chr5_4 | CDS | 34729127 | 34729313 | 34729127 | ID=Msa0848790-mRNA-1:cds;Parent=Msa0848790-mRNA-1 |
| chr5_4 | CDS | 34728562 | 34729046 | 34728562 | ID=Msa0848790-mRNA-1:cds;Parent=Msa0848790-mRNA-1 |
| chr5_4 | CDS | 34727154 | 34727612 | 34727154 | ID=Msa0848790-mRNA-1:cds;Parent=Msa0848790-mRNA-1 |
| chr5_4 | CDS | 34727018 | 34727074 | 34727018 | ID=Msa0848790-mRNA-1:cds;Parent=Msa0848790-mRNA-1 |
| chr5_4 | three_prime_UTR | 34726728 | 34727017 | 34726728 | ID=Msa0848790-mRNA-1:three_prime_utr;Parent=Msa0848790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
