Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849090 | XP_003614511.2 | 92.275 | 466 | 11 | 2 | 13 | 476 | 22 | 464 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849090 | sp|Q41558|HBP1C_WHEAT | 55.556 | 387 | 139 | 5 | 98 | 476 | 115 | 476 | 5.07e-139 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849090 | A0A396HTL1 | 92.275 | 466 | 11 | 2 | 13 | 476 | 22 | 464 | 0.0 | 877 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0849090 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849090 | MtrunA17_Chr5g0422771 | 92.275 | 466 | 11 | 2 | 13 | 476 | 22 | 464 | 0.0 | 877 |
| Msa0849090 | MtrunA17_Chr7g0256211 | 51.836 | 463 | 181 | 12 | 15 | 476 | 31 | 452 | 8.32e-147 | 427 |
| Msa0849090 | MtrunA17_Chr8g0353501 | 56.873 | 371 | 125 | 4 | 113 | 476 | 124 | 466 | 1.15e-135 | 399 |
| Msa0849090 | MtrunA17_Chr1g0210151 | 58.871 | 372 | 97 | 8 | 127 | 476 | 3 | 340 | 6.36e-133 | 387 |
| Msa0849090 | MtrunA17_Chr1g0174701 | 47.324 | 355 | 153 | 4 | 130 | 476 | 178 | 506 | 1.62e-107 | 328 |
| Msa0849090 | MtrunA17_Chr3g0124601 | 46.757 | 370 | 159 | 4 | 115 | 476 | 22 | 361 | 1.02e-104 | 316 |
| Msa0849090 | MtrunA17_Chr7g0258321 | 47.748 | 333 | 141 | 4 | 151 | 476 | 157 | 463 | 2.68e-100 | 308 |
| Msa0849090 | MtrunA17_Chr2g0321431 | 49.518 | 311 | 124 | 3 | 166 | 476 | 192 | 469 | 4.65e-96 | 298 |
| Msa0849090 | MtrunA17_Chr4g0026401 | 46.000 | 350 | 145 | 5 | 134 | 476 | 149 | 461 | 1.46e-95 | 297 |
| Msa0849090 | MtrunA17_Chr8g0382861 | 41.734 | 369 | 166 | 7 | 115 | 476 | 30 | 356 | 2.11e-79 | 251 |
| Msa0849090 | MtrunA17_Chr3g0093451 | 67.241 | 174 | 45 | 4 | 159 | 320 | 36 | 209 | 3.91e-75 | 235 |
| Msa0849090 | MtrunA17_Chr5g0424861 | 42.765 | 311 | 143 | 4 | 168 | 473 | 67 | 347 | 4.03e-72 | 232 |
| Msa0849090 | MtrunA17_Chr3g0115371 | 41.270 | 315 | 149 | 3 | 166 | 474 | 63 | 347 | 6.07e-72 | 231 |
| Msa0849090 | MtrunA17_Chr5g0424851 | 36.032 | 247 | 127 | 3 | 228 | 473 | 6 | 222 | 3.65e-41 | 152 |
| Msa0849090 | MtrunA17_Chr5g0424851 | 34.934 | 229 | 119 | 2 | 236 | 464 | 228 | 426 | 6.76e-38 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849090 | AT1G68640.1 | 50.535 | 467 | 176 | 9 | 25 | 476 | 26 | 452 | 2.54e-134 | 395 |
| Msa0849090 | AT3G12250.6 | 59.490 | 353 | 108 | 6 | 134 | 476 | 3 | 330 | 7.84e-132 | 385 |
| Msa0849090 | AT3G12250.2 | 59.490 | 353 | 108 | 6 | 134 | 476 | 3 | 330 | 7.84e-132 | 385 |
| Msa0849090 | AT3G12250.7 | 59.490 | 353 | 108 | 6 | 134 | 476 | 3 | 330 | 7.84e-132 | 385 |
| Msa0849090 | AT3G12250.1 | 59.490 | 353 | 108 | 6 | 134 | 476 | 3 | 330 | 7.84e-132 | 385 |
| Msa0849090 | AT3G12250.3 | 59.644 | 337 | 106 | 4 | 145 | 476 | 13 | 324 | 8.18e-130 | 379 |
| Msa0849090 | AT3G12250.5 | 62.058 | 311 | 94 | 2 | 166 | 476 | 17 | 303 | 4.15e-129 | 377 |
| Msa0849090 | AT5G06950.2 | 63.344 | 311 | 90 | 2 | 166 | 476 | 44 | 330 | 6.61e-129 | 377 |
| Msa0849090 | AT5G06950.4 | 63.344 | 311 | 90 | 2 | 166 | 476 | 44 | 330 | 6.61e-129 | 377 |
| Msa0849090 | AT5G06950.1 | 63.344 | 311 | 90 | 2 | 166 | 476 | 44 | 330 | 6.61e-129 | 377 |
| Msa0849090 | AT5G06950.5 | 63.344 | 311 | 90 | 2 | 166 | 476 | 44 | 330 | 6.61e-129 | 377 |
| Msa0849090 | AT5G06950.3 | 63.344 | 311 | 90 | 2 | 166 | 476 | 44 | 330 | 6.61e-129 | 377 |
| Msa0849090 | AT3G12250.4 | 60.661 | 333 | 101 | 4 | 149 | 476 | 48 | 355 | 3.05e-128 | 376 |
| Msa0849090 | AT5G06960.2 | 58.842 | 311 | 104 | 2 | 166 | 476 | 44 | 330 | 4.06e-117 | 347 |
| Msa0849090 | AT5G06960.1 | 58.842 | 311 | 104 | 2 | 166 | 476 | 44 | 330 | 4.06e-117 | 347 |
| Msa0849090 | AT5G06960.3 | 58.842 | 311 | 104 | 2 | 166 | 476 | 24 | 310 | 4.27e-117 | 346 |
| Msa0849090 | AT1G08320.2 | 51.768 | 311 | 117 | 3 | 166 | 476 | 52 | 329 | 4.07e-105 | 317 |
| Msa0849090 | AT1G08320.5 | 51.768 | 311 | 117 | 3 | 166 | 476 | 52 | 329 | 4.07e-105 | 317 |
| Msa0849090 | AT1G08320.1 | 51.768 | 311 | 117 | 3 | 166 | 476 | 176 | 453 | 1.94e-103 | 317 |
| Msa0849090 | AT1G08320.4 | 51.768 | 311 | 117 | 3 | 166 | 476 | 176 | 453 | 1.94e-103 | 317 |
| Msa0849090 | AT1G08320.3 | 51.768 | 311 | 117 | 3 | 166 | 476 | 176 | 453 | 1.94e-103 | 317 |
| Msa0849090 | AT5G06839.3 | 48.980 | 343 | 140 | 4 | 146 | 476 | 139 | 458 | 1.45e-102 | 314 |
| Msa0849090 | AT5G06839.1 | 48.974 | 341 | 139 | 4 | 148 | 476 | 98 | 415 | 5.33e-102 | 311 |
| Msa0849090 | AT5G06839.2 | 49.415 | 342 | 137 | 5 | 148 | 476 | 98 | 416 | 7.21e-102 | 311 |
| Msa0849090 | AT5G10030.5 | 47.989 | 348 | 144 | 6 | 135 | 476 | 46 | 362 | 5.09e-96 | 294 |
| Msa0849090 | AT5G10030.3 | 47.989 | 348 | 144 | 6 | 135 | 476 | 46 | 362 | 5.09e-96 | 294 |
| Msa0849090 | AT5G10030.1 | 47.989 | 348 | 144 | 6 | 135 | 476 | 46 | 362 | 5.09e-96 | 294 |
| Msa0849090 | AT5G10030.4 | 47.989 | 348 | 144 | 6 | 135 | 476 | 46 | 362 | 5.09e-96 | 294 |
| Msa0849090 | AT5G10030.2 | 47.989 | 348 | 144 | 6 | 135 | 476 | 46 | 362 | 5.09e-96 | 294 |
| Msa0849090 | AT1G77920.1 | 44.959 | 367 | 162 | 7 | 113 | 476 | 37 | 366 | 3.66e-93 | 287 |
| Msa0849090 | AT1G22070.1 | 48.765 | 324 | 133 | 5 | 157 | 476 | 88 | 382 | 1.38e-92 | 286 |
| Msa0849090 | AT5G65210.6 | 49.201 | 313 | 125 | 5 | 168 | 476 | 14 | 296 | 2.35e-90 | 277 |
| Msa0849090 | AT5G65210.5 | 49.201 | 313 | 125 | 5 | 168 | 476 | 84 | 366 | 7.21e-90 | 279 |
| Msa0849090 | AT5G65210.7 | 49.201 | 313 | 125 | 5 | 168 | 476 | 84 | 366 | 7.21e-90 | 279 |
| Msa0849090 | AT5G65210.3 | 49.201 | 313 | 125 | 5 | 168 | 476 | 84 | 366 | 7.21e-90 | 279 |
| Msa0849090 | AT5G65210.1 | 49.201 | 313 | 125 | 5 | 168 | 476 | 84 | 366 | 7.21e-90 | 279 |
| Msa0849090 | AT5G65210.2 | 49.201 | 313 | 125 | 5 | 168 | 476 | 84 | 366 | 7.21e-90 | 279 |
| Msa0849090 | AT5G65210.4 | 49.201 | 313 | 125 | 5 | 168 | 476 | 84 | 366 | 7.21e-90 | 279 |
Find 105 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTGACCGTTTCCTCTAT+TGG | 0.301083 | 5_4:+35365161 | None:intergenic |
| GGGAATAGCTTCCTTGCCTT+TGG | 0.313064 | 5_4:-35366271 | Msa0849090:CDS |
| GATGTATTTCACATGCTCTA+TGG | 0.319460 | 5_4:-35364311 | Msa0849090:CDS |
| GTTGAGAATTGGGCTGATTC+TGG | 0.320551 | 5_4:-35366237 | Msa0849090:CDS |
| CATTTACCTTCTTCCGTAAC+CGG | 0.349444 | 5_4:+35364975 | None:intergenic |
| CATGTAATCAGATACATTTC+CGG | 0.361147 | 5_4:+35363780 | None:intergenic |
| TCAGTATCCGGTACAGGTTC+CGG | 0.367258 | 5_4:-35363799 | Msa0849090:CDS |
| AAGTCGAACAATGTTGTTAT+TGG | 0.370112 | 5_4:-35367664 | Msa0849090:CDS |
| TACGAGCACTTAGTTCGTTA+TGG | 0.372994 | 5_4:-35363345 | Msa0849090:CDS |
| GGTGGTAGTAACATGCAGTA+TGG | 0.375687 | 5_4:-35367643 | Msa0849090:CDS |
| ATCGGCATTAAATTCTCAAA+TGG | 0.380282 | 5_4:-35364420 | Msa0849090:CDS |
| GAAATTGTCATGTTGAGAAT+TGG | 0.381065 | 5_4:-35366248 | Msa0849090:CDS |
| TCACATGAAGACGGTAACTT+AGG | 0.386515 | 5_4:+35363591 | None:intergenic |
| GGTCATTCTTCTGTTGGAAA+TGG | 0.397460 | 5_4:-35364633 | Msa0849090:intron |
| GGAATAGCTTCCTTGCCTTT+GGG | 0.406539 | 5_4:-35366270 | Msa0849090:CDS |
| TGTTCATTGCAAATGCCATC+TGG | 0.411477 | 5_4:+35363755 | None:intergenic |
| GGTGCAGGGTGTTCGGATGC+AGG | 0.422787 | 5_4:-35366330 | Msa0849090:CDS |
| GTGATCTTCAGCTCTGAACT+TGG | 0.429104 | 5_4:+35365128 | None:intergenic |
| CAAGTCCACCCCTACTCCCT+TGG | 0.429505 | 5_4:+35363313 | None:intergenic |
| AATGAACAAGCTTGCACTCC+TGG | 0.437038 | 5_4:-35363740 | Msa0849090:CDS |
| TCTGCTTGTCGATGGTGTTA+TGG | 0.438171 | 5_4:-35364381 | Msa0849090:CDS |
| CGGAAATGTATCTGATTACA+TGG | 0.440246 | 5_4:-35363779 | Msa0849090:CDS |
| ACTTTATGTTAGTCCAATAG+AGG | 0.440624 | 5_4:-35365174 | Msa0849090:intron |
| TTCACATGCTCTATGGGTTG+TGG | 0.444720 | 5_4:-35364304 | Msa0849090:CDS |
| GGCATGTTTATTGCAAATCC+TGG | 0.449620 | 5_4:-35364663 | Msa0849090:CDS |
| TTCAAATGGTGCAGGGTGTT+CGG | 0.453099 | 5_4:-35366337 | Msa0849090:CDS |
| CACATGAAGACGGTAACTTA+GGG | 0.455073 | 5_4:+35363592 | None:intergenic |
| ATTGCAAATCCTGGAGATCA+AGG | 0.455546 | 5_4:-35364654 | Msa0849090:CDS |
| TCCTCCACACCCTCAGTATC+CGG | 0.457605 | 5_4:-35363811 | Msa0849090:CDS |
| GTTAACTGAAAATCAGTTGA+TGG | 0.459301 | 5_4:-35363926 | Msa0849090:CDS |
| AAATTGTCATGTTGAGAATT+GGG | 0.469910 | 5_4:-35366247 | Msa0849090:CDS |
| TATTTAGATTAAAGAGCATA+GGG | 0.475914 | 5_4:-35364343 | Msa0849090:CDS |
| GCTTCAACGAGTACGTCAAC+AGG | 0.481742 | 5_4:-35364772 | Msa0849090:intron |
| ATGTATTTCACATGCTCTAT+GGG | 0.482660 | 5_4:-35364310 | Msa0849090:CDS |
| GATCAAGGTCATTCTTCTGT+TGG | 0.485204 | 5_4:-35364639 | Msa0849090:CDS |
| AAGTCCACCCCTACTCCCTT+GGG | 0.485810 | 5_4:+35363314 | None:intergenic |
| TGACATGGAATACACCCATT+GGG | 0.486261 | 5_4:-35364477 | Msa0849090:CDS |
| TCGAACAATGTTGTTATTGG+TGG | 0.490749 | 5_4:-35367661 | Msa0849090:CDS |
| GAAGAATGACCTTGATCTCC+AGG | 0.492393 | 5_4:+35364645 | None:intergenic |
| TGTTAGTCCAATAGAGGAAA+CGG | 0.492474 | 5_4:-35365168 | Msa0849090:intron |
| GCATCTTGTTGTGGAAAGAA+AGG | 0.513779 | 5_4:+35367817 | None:intergenic |
| CTCAGAATCGCGAGGCGGCA+AGG | 0.517608 | 5_4:-35365003 | Msa0849090:CDS |
| TCGGCATTAAATTCTCAAAT+GGG | 0.518412 | 5_4:-35364419 | Msa0849090:CDS |
| TTGACATGGAATACACCCAT+TGG | 0.518828 | 5_4:-35364478 | Msa0849090:CDS |
| GTTAGCACGCCCAAGGGAGT+AGG | 0.519419 | 5_4:-35363323 | None:intergenic |
| TACATTTCCGGAACCTGTAC+CGG | 0.526133 | 5_4:+35363792 | None:intergenic |
| GGCATACTGGAGTAGGAATA+CGG | 0.527720 | 5_4:+35363555 | None:intergenic |
| TTAGCACGCCCAAGGGAGTA+GGG | 0.528902 | 5_4:-35363322 | None:intergenic |
| GAGATTGCTTCAAATGGTGC+AGG | 0.534085 | 5_4:-35366345 | Msa0849090:CDS |
| TCTTCAGCAGTCTACTCAGC+AGG | 0.536008 | 5_4:-35363893 | Msa0849090:CDS |
| GAAGAGCCGGTTACGGAAGA+AGG | 0.537480 | 5_4:-35364981 | Msa0849090:intron |
| GTGCAGGGTGTTCGGATGCA+GGG | 0.541110 | 5_4:-35366329 | Msa0849090:CDS |
| AGGGAAGGGCATACTGGAGT+AGG | 0.541786 | 5_4:+35363548 | None:intergenic |
| ACTCACTTGGTGTTTATCAT+CGG | 0.542557 | 5_4:+35366155 | None:intergenic |
| CGGCAAGGAAGAGCCGGTTA+CGG | 0.550063 | 5_4:-35364988 | Msa0849090:CDS |
| CGTTATGGTTAGCACGCCCA+AGG | 0.550245 | 5_4:-35363330 | Msa0849090:CDS |
| GCAGAGTTTCTTGCTTCAAG+AGG | 0.550378 | 5_4:+35363443 | None:intergenic |
| TTGATGCTCGTCAACCCAAT+GGG | 0.551351 | 5_4:+35364463 | None:intergenic |
| TGACGACACGTCAGACTGCA+AGG | 0.551582 | 5_4:-35363402 | Msa0849090:CDS |
| CCTTGTGAAGGAAATCCTCC+AGG | 0.552077 | 5_4:+35363722 | None:intergenic |
| TTAACTGAAAATCAGTTGAT+GGG | 0.554063 | 5_4:-35363925 | Msa0849090:CDS |
| GCGAGGCGGCAAGGAAGAGC+CGG | 0.555351 | 5_4:-35364994 | Msa0849090:CDS |
| GTGGTAGTAACATGCAGTAT+GGG | 0.556094 | 5_4:-35367642 | Msa0849090:CDS |
| ATCTGATTACATGGGCCAGA+TGG | 0.556171 | 5_4:-35363770 | Msa0849090:CDS |
| TGGAAGTATCATCAGTCTGT+TGG | 0.557670 | 5_4:+35366196 | None:intergenic |
| CCTTGAGAATTTCAGATGAA+CGG | 0.560398 | 5_4:+35364240 | None:intergenic |
| GCAGTCTACTCAGCAGGCTG+AGG | 0.561351 | 5_4:-35363887 | Msa0849090:CDS |
| TCTGCAGAGATTGCTTCAAA+TGG | 0.562418 | 5_4:-35366351 | Msa0849090:CDS |
| GTTGATGCTCGTCAACCCAA+TGG | 0.562735 | 5_4:+35364462 | None:intergenic |
| TTATTTAGATTAAAGAGCAT+AGG | 0.568168 | 5_4:-35364344 | Msa0849090:CDS |
| ACACCCTCAGTATCCGGTAC+AGG | 0.569132 | 5_4:-35363805 | Msa0849090:CDS |
| GATTCTGAGCAAGTCTGCGA+AGG | 0.570330 | 5_4:+35365017 | None:intergenic |
| CCGTTCATCTGAAATTCTCA+AGG | 0.573160 | 5_4:-35364240 | Msa0849090:intron |
| AAATCAACAGCATCTTGTTG+TGG | 0.584033 | 5_4:+35367808 | None:intergenic |
| CCTGGAGGATTTCCTTCACA+AGG | 0.589186 | 5_4:-35363722 | Msa0849090:intron |
| TAGCACGCCCAAGGGAGTAG+GGG | 0.590305 | 5_4:-35363321 | None:intergenic |
| GCTGAGGATGCTTTATCTCA+CGG | 0.592632 | 5_4:-35363871 | Msa0849090:CDS |
| TGTACCGGATACTGAGGGTG+TGG | 0.601254 | 5_4:+35363807 | None:intergenic |
| AAATGTAATCATTTCTGACA+AGG | 0.602307 | 5_4:+35363374 | None:intergenic |
| TATGCTCAATGATCTAAGAT+CGG | 0.606462 | 5_4:-35364438 | Msa0849090:CDS |
| ATGACAATTTCCCAAAGGCA+AGG | 0.624956 | 5_4:+35366260 | None:intergenic |
| GGTATCGATATCAATATCAG+TGG | 0.627662 | 5_4:+35366176 | None:intergenic |
| ATTCTGAGCAAGTCTGCGAA+GGG | 0.627771 | 5_4:+35365018 | None:intergenic |
| AGGTGCTCTAGCATTTGACA+TGG | 0.632527 | 5_4:-35364492 | Msa0849090:CDS |
| TCAACATGACAATTTCCCAA+AGG | 0.632745 | 5_4:+35366255 | None:intergenic |
| ACCGGATACTGAGGGTGTGG+AGG | 0.638958 | 5_4:+35363810 | None:intergenic |
| GAATTGGGCTGATTCTGGCG+TGG | 0.640437 | 5_4:-35366232 | Msa0849090:CDS |
| GGAACCTGTACCGGATACTG+AGG | 0.640922 | 5_4:+35363801 | None:intergenic |
| GACGACACGTCAGACTGCAA+GGG | 0.641820 | 5_4:-35363401 | Msa0849090:CDS |
| GTTCAGAGCTGAAGATCACA+AGG | 0.647306 | 5_4:-35365124 | Msa0849090:intron |
| GGATGCTTTATCTCACGGCA+TGG | 0.651448 | 5_4:-35363866 | Msa0849090:CDS |
| GAACAAGCTTGCACTCCTGG+AGG | 0.653361 | 5_4:-35363737 | Msa0849090:CDS |
| GAATTGCATCTGCTTGTCGA+TGG | 0.653447 | 5_4:-35364389 | Msa0849090:CDS |
| TTTCAGTTAACGGCTCGAGG+TGG | 0.666369 | 5_4:+35363938 | None:intergenic |
| AGATTGCTTCAAATGGTGCA+GGG | 0.667836 | 5_4:-35366344 | Msa0849090:CDS |
| GTATGGGACAACAATTAACA+TGG | 0.671970 | 5_4:-35367626 | Msa0849090:intron |
| CAGACTTGCTCAGAATCGCG+AGG | 0.675205 | 5_4:-35365011 | Msa0849090:CDS |
| GGAAATGTATCTGATTACAT+GGG | 0.675444 | 5_4:-35363778 | Msa0849090:CDS |
| GCAGCAGCTGATGTACAACA+AGG | 0.679055 | 5_4:-35366292 | Msa0849090:CDS |
| ATTTAGATTAAAGAGCATAG+GGG | 0.679279 | 5_4:-35364342 | Msa0849090:CDS |
| GAACCTGTACCGGATACTGA+GGG | 0.682981 | 5_4:+35363802 | None:intergenic |
| ATAGAGCATGTGAAATACAT+CGG | 0.690239 | 5_4:+35364313 | None:intergenic |
| GTTATGGTTAGCACGCCCAA+GGG | 0.694685 | 5_4:-35363329 | Msa0849090:CDS |
| ACTTGCTCAGAATCGCGAGG+CGG | 0.696700 | 5_4:-35365008 | Msa0849090:CDS |
| CAGCAGCTGATGTACAACAA+GGG | 0.710804 | 5_4:-35366291 | Msa0849090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAATATATAATATAAA+TGG | - | chr5_4:35364238-35364257 | Msa0849090:intron | 0.0% |
| !! | TATAAATATATAATATAAAT+GGG | - | chr5_4:35364239-35364258 | Msa0849090:intron | 0.0% |
| !!! | AAATGTTATATTTTAAATGA+GGG | + | chr5_4:35364208-35364227 | None:intergenic | 10.0% |
| !!! | AAAATGTTATATTTTAAATG+AGG | + | chr5_4:35364209-35364228 | None:intergenic | 10.0% |
| !! | AATAAATAAAAAAAAACACT+GGG | + | chr5_4:35365169-35365188 | None:intergenic | 10.0% |
| !! | AAATAAATAAAAAAAAACAC+TGG | + | chr5_4:35365170-35365189 | None:intergenic | 10.0% |
| !!! | GATATATATTTTTTTTTTTG+AGG | - | chr5_4:35365632-35365651 | Msa0849090:intron | 10.0% |
| !!! | TTATGTTACATTTTTTCAAA+GGG | + | chr5_4:35363700-35363719 | None:intergenic | 15.0% |
| !!! | ATTATGTTACATTTTTTCAA+AGG | + | chr5_4:35363701-35363720 | None:intergenic | 15.0% |
| !!! | AATGTTATATTTTAAATGAG+GGG | + | chr5_4:35364207-35364226 | None:intergenic | 15.0% |
| !!! | TACTATTTTCTTTATTTACA+AGG | + | chr5_4:35364279-35364298 | None:intergenic | 15.0% |
| !! | TATAAACATTACAAGAAAAA+TGG | - | chr5_4:35364300-35364319 | Msa0849090:CDS | 15.0% |
| !!! | TTTTTTAATAAAATTAGGGA+AGG | + | chr5_4:35364761-35364780 | None:intergenic | 15.0% |
| !! | AAAAAAAAGACTTAATAAAC+TGG | - | chr5_4:35364776-35364795 | Msa0849090:CDS | 15.0% |
| !! | AAAAAAAGACTTAATAAACT+GGG | - | chr5_4:35364777-35364796 | Msa0849090:CDS | 15.0% |
| !!! | TATAAATTGACTACTATTTT+GGG | + | chr5_4:35365275-35365294 | None:intergenic | 15.0% |
| !!! | TTATAAATTGACTACTATTT+TGG | + | chr5_4:35365276-35365295 | None:intergenic | 15.0% |
| !!! | TGAATTTTAGTTTAAACAAA+TGG | - | chr5_4:35365668-35365687 | Msa0849090:intron | 15.0% |
| !!! | TTAAGCTTTAATGATATATA+TGG | - | chr5_4:35366376-35366395 | Msa0849090:intron | 15.0% |
| !!! | AAACTGTTTTTTTTTTTTGC+AGG | - | chr5_4:35363537-35363556 | Msa0849090:intron | 20.0% |
| !!! | CATAATTAAATTTCTGAGAA+AGG | - | chr5_4:35363715-35363734 | Msa0849090:intron | 20.0% |
| !!! | ATTGAATCACCTTTTTTTTA+AGG | + | chr5_4:35365553-35365572 | None:intergenic | 20.0% |
| !! | AGTTATTGTATTGTTTGTAT+CGG | + | chr5_4:35365886-35365905 | None:intergenic | 20.0% |
| !! | AATATAGATACATATGCAAA+AGG | + | chr5_4:35366317-35366336 | None:intergenic | 20.0% |
| !! | TTAATGATATATATGGATGT+TGG | - | chr5_4:35366383-35366402 | Msa0849090:intron | 20.0% |
| !! | ATAATGTTTATTGATCATTC+AGG | - | chr5_4:35366731-35366750 | Msa0849090:intron | 20.0% |
| !!! | TTATTTAGATTAAAGAGCAT+AGG | - | chr5_4:35366899-35366918 | Msa0849090:intron | 20.0% |
| !!! | TATTTAGATTAAAGAGCATA+GGG | - | chr5_4:35366900-35366919 | Msa0849090:intron | 20.0% |
| !! | CAAATAAAAAATCTTTCTAC+TGG | + | chr5_4:35366971-35366990 | None:intergenic | 20.0% |
| !!! | CAGTAGAAAGATTTTTTATT+TGG | - | chr5_4:35366969-35366988 | Msa0849090:intron | 20.0% |
| !! | TTAAAAAACACACTATGAAT+TGG | + | chr5_4:35367036-35367055 | None:intergenic | 20.0% |
| !!! | TTCATAGTGTGTTTTTTAAT+TGG | - | chr5_4:35367037-35367056 | Msa0849090:intron | 20.0% |
| ! | GTAAGAGTTAATGATTCTAA+AGG | + | chr5_4:35363757-35363776 | None:intergenic | 25.0% |
| ! | ATCATTAACTCTTACACTTT+AGG | - | chr5_4:35363762-35363781 | Msa0849090:CDS | 25.0% |
| !! | ATTTTGAACACTATACTTTG+AGG | + | chr5_4:35363821-35363840 | None:intergenic | 25.0% |
| ! | ATGATTATTAGTGTAACACT+AGG | - | chr5_4:35363868-35363887 | Msa0849090:CDS | 25.0% |
| !! | TTGATTCTGTAATTTTCATG+AGG | - | chr5_4:35363902-35363921 | Msa0849090:CDS | 25.0% |
| ! | CTTACAATACACTAAATGAT+GGG | - | chr5_4:35363963-35363982 | Msa0849090:intron | 25.0% |
| ! | GTAATAGGAAAGATTGTTTA+AGG | - | chr5_4:35364061-35364080 | Msa0849090:intron | 25.0% |
| ! | AAAGAAAGTGAATAGAAAGA+AGG | - | chr5_4:35364084-35364103 | Msa0849090:intron | 25.0% |
| ! | ACATTACAAGAAAAATGGAA+AGG | - | chr5_4:35364305-35364324 | Msa0849090:CDS | 25.0% |
| !! | TTTGTGTTTTCATAGAATGT+TGG | - | chr5_4:35364868-35364887 | Msa0849090:intron | 25.0% |
| !! | TTGTGTTTTCATAGAATGTT+GGG | - | chr5_4:35364869-35364888 | Msa0849090:intron | 25.0% |
| ! | AAATTGTCATGTTGAGAATT+GGG | - | chr5_4:35364996-35365015 | Msa0849090:CDS | 25.0% |
| ! | AAAAAATTGATCTAAACAGC+CGG | - | chr5_4:35365198-35365217 | Msa0849090:intron | 25.0% |
| ! | TTGGGTGTTTAAATTAGAAA+GGG | + | chr5_4:35365257-35365276 | None:intergenic | 25.0% |
| ! | TTTGGGTGTTTAAATTAGAA+AGG | + | chr5_4:35365258-35365277 | None:intergenic | 25.0% |
| !! | ATAATTTGAAATTTATCCCG+AGG | - | chr5_4:35365292-35365311 | Msa0849090:intron | 25.0% |
| ! | AAAATCTGAACTAACTTCAA+AGG | + | chr5_4:35365454-35365473 | None:intergenic | 25.0% |
| ! | AGAGTCAATAAGTAAGAAAA+TGG | - | chr5_4:35365520-35365539 | Msa0849090:intron | 25.0% |
| ! | GAGTCAATAAGTAAGAAAAT+GGG | - | chr5_4:35365521-35365540 | Msa0849090:intron | 25.0% |
| ! | TACACGAGTATTTAAAAATG+AGG | + | chr5_4:35365962-35365981 | None:intergenic | 25.0% |
| !!! | TATATTTTTGTTGTAGACCA+AGG | - | chr5_4:35366331-35366350 | Msa0849090:CDS | 25.0% |
| !!! | ATATTTTTGTTGTAGACCAA+GGG | - | chr5_4:35366332-35366351 | Msa0849090:CDS | 25.0% |
| !!! | ATATGGATGTTGGTTTTAAT+AGG | - | chr5_4:35366393-35366412 | Msa0849090:intron | 25.0% |
| !!! | ATCTGTTATTTTTTTCCTCA+TGG | - | chr5_4:35366539-35366558 | Msa0849090:intron | 25.0% |
| ! | CAATAAACATTATCACAACT+CGG | + | chr5_4:35366724-35366743 | None:intergenic | 25.0% |
| !! | ATTTAGATTAAAGAGCATAG+GGG | - | chr5_4:35366901-35366920 | Msa0849090:intron | 25.0% |
| !!! | GAAAGATTTTTTATTTGGCA+TGG | - | chr5_4:35366974-35366993 | Msa0849090:intron | 25.0% |
| !!! | TGTTTTTTAATTGGAGAATG+AGG | - | chr5_4:35367046-35367065 | Msa0849090:intron | 25.0% |
| !!! | ATCAACTGATTTTCAGTTAA+CGG | + | chr5_4:35367318-35367337 | None:intergenic | 25.0% |
| ! | TTAACTGAAAATCAGTTGAT+GGG | - | chr5_4:35367318-35367337 | Msa0849090:intron | 25.0% |
| !! | ATATCTATTTTACCTTGTGA+AGG | + | chr5_4:35367536-35367555 | None:intergenic | 25.0% |
| ! | AGTTAATCTTTCTATGCTAA+GGG | - | chr5_4:35367558-35367577 | Msa0849090:intron | 25.0% |
| !!! | TCTATTTTTCACATTCATCA+AGG | + | chr5_4:35367616-35367635 | None:intergenic | 25.0% |
| ! | ACAAAAAATTCACATGAAGA+CGG | + | chr5_4:35367664-35367683 | None:intergenic | 25.0% |
| ! | AAATGTAATCATTTCTGACA+AGG | + | chr5_4:35367872-35367891 | None:intergenic | 25.0% |
| ! | GTTTTTGATGAAACAAACAG+AGG | - | chr5_4:35363342-35363361 | Msa0849090:CDS | 30.0% |
| ! | ACAATGCGTTTTTCTGATAT+TGG | - | chr5_4:35363384-35363403 | Msa0849090:CDS | 30.0% |
| AAGTCGAACAATGTTGTTAT+TGG | - | chr5_4:35363579-35363598 | Msa0849090:CDS | 30.0% | |
| AAAAAGCTAAGAGAGAAAAG+AGG | + | chr5_4:35363651-35363670 | None:intergenic | 30.0% | |
| ! | TGATTCTAAAGGACAATTTG+TGG | + | chr5_4:35363746-35363765 | None:intergenic | 30.0% |
| !!! | TTACCCTATTTTTACACAAG+TGG | + | chr5_4:35363939-35363958 | None:intergenic | 30.0% |
| GCTTACAATACACTAAATGA+TGG | - | chr5_4:35363962-35363981 | Msa0849090:intron | 30.0% | |
| GTAGAAGGAAAGAAAGTAAT+AGG | - | chr5_4:35364046-35364065 | Msa0849090:intron | 30.0% | |
| TAGAATGTGAGATGATTGTT+TGG | - | chr5_4:35364107-35364126 | Msa0849090:intron | 30.0% | |
| !! | TGATGCAATGCTCTAAAATA+AGG | - | chr5_4:35364369-35364388 | Msa0849090:CDS | 30.0% |
| !! | GATGCAATGCTCTAAAATAA+GGG | - | chr5_4:35364370-35364389 | Msa0849090:CDS | 30.0% |
| AAAACTTTCTTTCCATGGTT+TGG | + | chr5_4:35364517-35364536 | None:intergenic | 30.0% | |
| TATGGAAAACTTTCTTTCCA+TGG | + | chr5_4:35364522-35364541 | None:intergenic | 30.0% | |
| TAGAGAGGATAGAAAGTTTA+TGG | + | chr5_4:35364540-35364559 | None:intergenic | 30.0% | |
| TGTTTGTTTCAACTGATTGT+GGG | + | chr5_4:35364574-35364593 | None:intergenic | 30.0% | |
| AACACCTCATGAAAATTACA+GGG | + | chr5_4:35364618-35364637 | None:intergenic | 30.0% | |
| TAACACCTCATGAAAATTAC+AGG | + | chr5_4:35364619-35364638 | None:intergenic | 30.0% | |
| TTAATCAGACGCAAAACATA+AGG | + | chr5_4:35364842-35364861 | None:intergenic | 30.0% | |
| GAAATTGTCATGTTGAGAAT+TGG | - | chr5_4:35364995-35365014 | Msa0849090:CDS | 30.0% | |
| ATAAAAAAAAACACTGGGCT+GGG | + | chr5_4:35365164-35365183 | None:intergenic | 30.0% | |
| AATAAAAAAAAACACTGGGC+TGG | + | chr5_4:35365165-35365184 | None:intergenic | 30.0% | |
| AAATTAGAAAGGGGGATAAA+GGG | + | chr5_4:35365247-35365266 | None:intergenic | 30.0% | |
| TAAATTAGAAAGGGGGATAA+AGG | + | chr5_4:35365248-35365267 | None:intergenic | 30.0% | |
| TGGGTGTTTAAATTAGAAAG+GGG | + | chr5_4:35365256-35365275 | None:intergenic | 30.0% | |
| ACTATCTTTGATCTTTGATG+TGG | - | chr5_4:35365420-35365439 | Msa0849090:intron | 30.0% | |
| ! | GAAGTTAGTTCAGATTTTGA+CGG | - | chr5_4:35365456-35365475 | Msa0849090:intron | 30.0% |
| TCTGGACATAAAATATCAGT+GGG | + | chr5_4:35365792-35365811 | None:intergenic | 30.0% | |
| ATCTGGACATAAAATATCAG+TGG | + | chr5_4:35365793-35365812 | None:intergenic | 30.0% | |
| AGCAAAACATGTATGAGAAA+TGG | + | chr5_4:35365846-35365865 | None:intergenic | 30.0% | |
| ACTTTATGTTAGTCCAATAG+AGG | - | chr5_4:35366069-35366088 | Msa0849090:intron | 30.0% | |
| !! | TTTTGATCTAGTTCCTGATT+TGG | - | chr5_4:35366185-35366204 | Msa0849090:CDS | 30.0% |
| !! | TATTTTTGTTGTAGACCAAG+GGG | - | chr5_4:35366333-35366352 | Msa0849090:CDS | 30.0% |
| CATTAAAATTCACAACCATG+AGG | + | chr5_4:35366557-35366576 | None:intergenic | 30.0% | |
| !! | ATGGTTGTGAATTTTAATGC+AGG | - | chr5_4:35366558-35366577 | Msa0849090:intron | 30.0% |
| !! | TGGTTGTGAATTTTAATGCA+GGG | - | chr5_4:35366559-35366578 | Msa0849090:intron | 30.0% |
| ! | TATGCTCAATGATCTAAGAT+CGG | - | chr5_4:35366805-35366824 | Msa0849090:intron | 30.0% |
| ATCGGCATTAAATTCTCAAA+TGG | - | chr5_4:35366823-35366842 | Msa0849090:intron | 30.0% | |
| TCGGCATTAAATTCTCAAAT+GGG | - | chr5_4:35366824-35366843 | Msa0849090:intron | 30.0% | |
| ATAGAGCATGTGAAATACAT+CGG | + | chr5_4:35366933-35366952 | None:intergenic | 30.0% | |
| ATGTATTTCACATGCTCTAT+GGG | - | chr5_4:35366933-35366952 | Msa0849090:intron | 30.0% | |
| ! | ACAACTGTTTCGAGAAATTT+TGG | - | chr5_4:35367107-35367126 | Msa0849090:intron | 30.0% |
| ACTTTATAACACAAGGGAAA+AGG | + | chr5_4:35367134-35367153 | None:intergenic | 30.0% | |
| AGCTTGACTTTATAACACAA+GGG | + | chr5_4:35367140-35367159 | None:intergenic | 30.0% | |
| GTTAACTGAAAATCAGTTGA+TGG | - | chr5_4:35367317-35367336 | Msa0849090:intron | 30.0% | |
| CATGTAATCAGATACATTTC+CGG | + | chr5_4:35367466-35367485 | None:intergenic | 30.0% | |
| GGAAATGTATCTGATTACAT+GGG | - | chr5_4:35367465-35367484 | Msa0849090:intron | 30.0% | |
| CAGTTAATCTTTCTATGCTA+AGG | - | chr5_4:35367557-35367576 | Msa0849090:intron | 30.0% | |
| AACCATGTATTTGAACTACT+TGG | + | chr5_4:35367727-35367746 | None:intergenic | 30.0% | |
| !! | TTGTTGTCATGCTTGTTTTT+AGG | - | chr5_4:35367773-35367792 | Msa0849090:intron | 30.0% |
| AAATCAACAGCATCTTGTTG+TGG | + | chr5_4:35363438-35363457 | None:intergenic | 35.0% | |
| ! | TCGAACAATGTTGTTATTGG+TGG | - | chr5_4:35363582-35363601 | Msa0849090:CDS | 35.0% |
| GTATGGGACAACAATTAACA+TGG | - | chr5_4:35363617-35363636 | Msa0849090:intron | 35.0% | |
| ! | AATTCAAATTCCCTCTGAGA+CGG | - | chr5_4:35363838-35363857 | Msa0849090:CDS | 35.0% |
| ACAGCCACTTGTGTAAAAAT+AGG | - | chr5_4:35363932-35363951 | Msa0849090:CDS | 35.0% | |
| CAGCCACTTGTGTAAAAATA+GGG | - | chr5_4:35363933-35363952 | Msa0849090:CDS | 35.0% | |
| GGATGATCAAAGAAAGTAGA+AGG | - | chr5_4:35364031-35364050 | Msa0849090:intron | 35.0% | |
| GAGATGATTGTTTGGTTGTT+TGG | - | chr5_4:35364115-35364134 | Msa0849090:intron | 35.0% | |
| GAAAGTGAGAAGAAAGTGAA+AGG | - | chr5_4:35364145-35364164 | Msa0849090:intron | 35.0% | |
| !! | GCTCTAAAATAAGGGCTATT+TGG | - | chr5_4:35364378-35364397 | Msa0849090:CDS | 35.0% |
| ACCAGAATGAGAAGAAAGTT+GGG | + | chr5_4:35364430-35364449 | None:intergenic | 35.0% | |
| !! | GAAAGAAAGTGCACTTTTTG+TGG | + | chr5_4:35364478-35364497 | None:intergenic | 35.0% |
| CTGTTTGTTTCAACTGATTG+TGG | + | chr5_4:35364575-35364594 | None:intergenic | 35.0% | |
| TTAGCTCAGTTATTAGAGCT+TGG | - | chr5_4:35364636-35364655 | Msa0849090:CDS | 35.0% | |
| ! | TTTTACAACTATCTCCGAGA+GGG | + | chr5_4:35364692-35364711 | None:intergenic | 35.0% |
| ! | ATTTTACAACTATCTCCGAG+AGG | + | chr5_4:35364693-35364712 | None:intergenic | 35.0% |
| TCAACATGACAATTTCCCAA+AGG | + | chr5_4:35364991-35365010 | None:intergenic | 35.0% | |
| !! | GGTATCGATATCAATATCAG+TGG | + | chr5_4:35365070-35365089 | None:intergenic | 35.0% |
| !! | ACTCACTTGGTGTTTATCAT+CGG | + | chr5_4:35365091-35365110 | None:intergenic | 35.0% |
| GGGTGTTTAAATTAGAAAGG+GGG | + | chr5_4:35365255-35365274 | None:intergenic | 35.0% | |
| GGGTGACTTCCTTAAAAAAA+AGG | - | chr5_4:35365541-35365560 | Msa0849090:intron | 35.0% | |
| AACATGTATGAGAAATGGAG+AGG | + | chr5_4:35365841-35365860 | None:intergenic | 35.0% | |
| TGTTAGTCCAATAGAGGAAA+CGG | - | chr5_4:35366075-35366094 | Msa0849090:intron | 35.0% | |
| !! | GAAAAAAGAGCATCCAAATC+AGG | + | chr5_4:35366201-35366220 | None:intergenic | 35.0% |
| AAATGGTCTCGATGGAAATA+TGG | - | chr5_4:35366286-35366305 | Msa0849090:CDS | 35.0% | |
| AATGGTCTCGATGGAAATAT+GGG | - | chr5_4:35366287-35366306 | Msa0849090:CDS | 35.0% | |
| GATTGTGCATAAACATCAAC+TGG | + | chr5_4:35366522-35366541 | None:intergenic | 35.0% | |
| AAACATTATCACAACTCGGT+GGG | + | chr5_4:35366720-35366739 | None:intergenic | 35.0% | |
| TAAACATTATCACAACTCGG+TGG | + | chr5_4:35366721-35366740 | None:intergenic | 35.0% | |
| GATGTATTTCACATGCTCTA+TGG | - | chr5_4:35366932-35366951 | Msa0849090:intron | 35.0% | |
| CCTTGAGAATTTCAGATGAA+CGG | + | chr5_4:35367006-35367025 | None:intergenic | 35.0% | |
| GAGCTTGACTTTATAACACA+AGG | + | chr5_4:35367141-35367160 | None:intergenic | 35.0% | |
| GTACTGTTGAATTGACTATG+AGG | + | chr5_4:35367181-35367200 | None:intergenic | 35.0% | |
| CGGAAATGTATCTGATTACA+TGG | - | chr5_4:35367464-35367483 | Msa0849090:intron | 35.0% | |
| CATGTATTTGAACTACTTGG+CGG | + | chr5_4:35367724-35367743 | None:intergenic | 35.0% | |
| ! | GCATCTTGTTGTGGAAAGAA+AGG | + | chr5_4:35363429-35363448 | None:intergenic | 40.0% |
| GTGGTAGTAACATGCAGTAT+GGG | - | chr5_4:35363601-35363620 | Msa0849090:CDS | 40.0% | |
| ! | TTACACTTTAGGTGCTACCT+CGG | - | chr5_4:35363773-35363792 | Msa0849090:CDS | 40.0% |
| ATGTTAAACTCGTTTCACCG+AGG | + | chr5_4:35363793-35363812 | None:intergenic | 40.0% | |
| ! | CATTTTACAACCGTCTCAGA+GGG | + | chr5_4:35363851-35363870 | None:intergenic | 40.0% |
| ! | TCATTTTACAACCGTCTCAG+AGG | + | chr5_4:35363852-35363871 | None:intergenic | 40.0% |
| TCCCAACTTTCTTCTCATTC+TGG | - | chr5_4:35364426-35364445 | Msa0849090:CDS | 40.0% | |
| CACCAGAATGAGAAGAAAGT+TGG | + | chr5_4:35364431-35364450 | None:intergenic | 40.0% | |
| ACTTTCTTCTCATTCTGGTG+CGG | - | chr5_4:35364431-35364450 | Msa0849090:CDS | 40.0% | |
| !! | GTTTGGTTTGAATGTGAGAG+AGG | + | chr5_4:35364500-35364519 | None:intergenic | 40.0% |
| CTCACATTCAAACCAAACCA+TGG | - | chr5_4:35364502-35364521 | Msa0849090:intron | 40.0% | |
| TTGTTTCAACTGATTGTGGG+AGG | + | chr5_4:35364571-35364590 | None:intergenic | 40.0% | |
| ATGAAAATTACAGGGCAACC+CGG | + | chr5_4:35364610-35364629 | None:intergenic | 40.0% | |
| ! | GTTGCCCTGTAATTTTCATG+AGG | - | chr5_4:35364611-35364630 | Msa0849090:intron | 40.0% |
| GGATACACTATTACTCGCTA+GGG | + | chr5_4:35364821-35364840 | None:intergenic | 40.0% | |
| AGGATACACTATTACTCGCT+AGG | + | chr5_4:35364822-35364841 | None:intergenic | 40.0% | |
| TCTGCAGAGATTGCTTCAAA+TGG | - | chr5_4:35364892-35364911 | Msa0849090:intron | 40.0% | |
| AGATTGCTTCAAATGGTGCA+GGG | - | chr5_4:35364899-35364918 | Msa0849090:intron | 40.0% | |
| ATGACAATTTCCCAAAGGCA+AGG | + | chr5_4:35364986-35365005 | None:intergenic | 40.0% | |
| !! | TGGAAGTATCATCAGTCTGT+TGG | + | chr5_4:35365050-35365069 | None:intergenic | 40.0% |
| AAAGGGAAAACGTGAGTGTT+TGG | + | chr5_4:35365230-35365249 | None:intergenic | 40.0% | |
| CTTTCATTGTGCAAAGCTTG+CGG | - | chr5_4:35365383-35365402 | Msa0849090:intron | 40.0% | |
| !! | GTTAGTTCAGATTTTGACGG+TGG | - | chr5_4:35365459-35365478 | Msa0849090:intron | 40.0% |
| ! | GTTTTGCTGACATCTGATAG+CGG | - | chr5_4:35366039-35366058 | Msa0849090:intron | 40.0% |
| CATTTACCTTCTTCCGTAAC+CGG | + | chr5_4:35366271-35366290 | None:intergenic | 40.0% | |
| AAGAAGGTAAATGGTCTCGA+TGG | - | chr5_4:35366278-35366297 | Msa0849090:CDS | 40.0% | |
| CTTTGAATTCAGTAACCCCT+TGG | + | chr5_4:35366351-35366370 | None:intergenic | 40.0% | |
| CAAGGGGTTACTGAATTCAA+AGG | - | chr5_4:35366349-35366368 | Msa0849090:CDS | 40.0% | |
| GGCATGTTTATTGCAAATCC+TGG | - | chr5_4:35366580-35366599 | Msa0849090:intron | 40.0% | |
| ATTGCAAATCCTGGAGATCA+AGG | - | chr5_4:35366589-35366608 | Msa0849090:intron | 40.0% | |
| GATCAAGGTCATTCTTCTGT+TGG | - | chr5_4:35366604-35366623 | Msa0849090:intron | 40.0% | |
| GGTCATTCTTCTGTTGGAAA+TGG | - | chr5_4:35366610-35366629 | Msa0849090:intron | 40.0% | |
| ! | AACATTATCACAACTCGGTG+GGG | + | chr5_4:35366719-35366738 | None:intergenic | 40.0% |
| TTGACATGGAATACACCCAT+TGG | - | chr5_4:35366765-35366784 | Msa0849090:intron | 40.0% | |
| TGACATGGAATACACCCATT+GGG | - | chr5_4:35366766-35366785 | Msa0849090:intron | 40.0% | |
| ! | CCGTTCATCTGAAATTCTCA+AGG | - | chr5_4:35367003-35367022 | Msa0849090:intron | 40.0% |
| TGTTCATTGCAAATGCCATC+TGG | + | chr5_4:35367491-35367510 | None:intergenic | 40.0% | |
| CACATGAAGACGGTAACTTA+GGG | + | chr5_4:35367654-35367673 | None:intergenic | 40.0% | |
| TCACATGAAGACGGTAACTT+AGG | + | chr5_4:35367655-35367674 | None:intergenic | 40.0% | |
| CGCCAAGTAGTTCAAATACA+TGG | - | chr5_4:35367722-35367741 | Msa0849090:intron | 40.0% | |
| TACGAGCACTTAGTTCGTTA+TGG | - | chr5_4:35367898-35367917 | Msa0849090:CDS | 40.0% | |
| GGTGGTAGTAACATGCAGTA+TGG | - | chr5_4:35363600-35363619 | Msa0849090:CDS | 45.0% | |
| ! | TAAATGATGGGACCCTTTCC+TGG | - | chr5_4:35363975-35363994 | Msa0849090:intron | 45.0% |
| !! | CAGGAGCTTTAGGGTTTGTT+TGG | - | chr5_4:35364010-35364029 | Msa0849090:intron | 45.0% |
| ! | TGGGAGGATTGATAGTAGAG+AGG | + | chr5_4:35364555-35364574 | None:intergenic | 45.0% |
| AGCGATGTTCAAATCCCTCT+CGG | - | chr5_4:35364675-35364694 | Msa0849090:intron | 45.0% | |
| GAGATTGCTTCAAATGGTGC+AGG | - | chr5_4:35364898-35364917 | Msa0849090:intron | 45.0% | |
| ! | TTCAAATGGTGCAGGGTGTT+CGG | - | chr5_4:35364906-35364925 | Msa0849090:intron | 45.0% |
| CAGCAGCTGATGTACAACAA+GGG | - | chr5_4:35364952-35364971 | Msa0849090:intron | 45.0% | |
| GGAATAGCTTCCTTGCCTTT+GGG | - | chr5_4:35364973-35364992 | Msa0849090:intron | 45.0% | |
| ! | GTTGAGAATTGGGCTGATTC+TGG | - | chr5_4:35365006-35365025 | Msa0849090:CDS | 45.0% |
| AAACACCAAGTGAGTTACCC+AGG | - | chr5_4:35365096-35365115 | Msa0849090:intron | 45.0% | |
| AACACCAAGTGAGTTACCCA+GGG | - | chr5_4:35365097-35365116 | Msa0849090:intron | 45.0% | |
| GAAAACGTGAGTGTTTGGAC+TGG | + | chr5_4:35365225-35365244 | None:intergenic | 45.0% | |
| GAAATTTATCCCGAGGTCAC+AGG | - | chr5_4:35365299-35365318 | Msa0849090:intron | 45.0% | |
| AAATGGAGAGGTAACTCCAG+GGG | + | chr5_4:35365829-35365848 | None:intergenic | 45.0% | |
| GAAATGGAGAGGTAACTCCA+GGG | + | chr5_4:35365830-35365849 | None:intergenic | 45.0% | |
| AGAAATGGAGAGGTAACTCC+AGG | + | chr5_4:35365831-35365850 | None:intergenic | 45.0% | |
| AGAGTGACCGTTTCCTCTAT+TGG | + | chr5_4:35366085-35366104 | None:intergenic | 45.0% | |
| !! | GTGATCTTCAGCTCTGAACT+TGG | + | chr5_4:35366118-35366137 | None:intergenic | 45.0% |
| GTTCAGAGCTGAAGATCACA+AGG | - | chr5_4:35366119-35366138 | Msa0849090:intron | 45.0% | |
| ATTCTGAGCAAGTCTGCGAA+GGG | + | chr5_4:35366228-35366247 | None:intergenic | 45.0% | |
| CGGTTACGGAAGAAGGTAAA+TGG | - | chr5_4:35366269-35366288 | Msa0849090:CDS | 45.0% | |
| GAAGAATGACCTTGATCTCC+AGG | + | chr5_4:35366601-35366620 | None:intergenic | 45.0% | |
| ! | ACATTATCACAACTCGGTGG+GGG | + | chr5_4:35366718-35366737 | None:intergenic | 45.0% |
| AGGTGCTCTAGCATTTGACA+TGG | - | chr5_4:35366751-35366770 | Msa0849090:intron | 45.0% | |
| TTGATGCTCGTCAACCCAAT+GGG | + | chr5_4:35366783-35366802 | None:intergenic | 45.0% | |
| GAATTGCATCTGCTTGTCGA+TGG | - | chr5_4:35366854-35366873 | Msa0849090:intron | 45.0% | |
| ! | TCTGCTTGTCGATGGTGTTA+TGG | - | chr5_4:35366862-35366881 | Msa0849090:intron | 45.0% |
| ! | TTCACATGCTCTATGGGTTG+TGG | - | chr5_4:35366939-35366958 | Msa0849090:intron | 45.0% |
| ! | GATTTTCAGTTAACGGCTCG+AGG | + | chr5_4:35367311-35367330 | None:intergenic | 45.0% |
| GCTGAGGATGCTTTATCTCA+CGG | - | chr5_4:35367372-35367391 | Msa0849090:intron | 45.0% | |
| TACATTTCCGGAACCTGTAC+CGG | + | chr5_4:35367454-35367473 | None:intergenic | 45.0% | |
| ATCTGATTACATGGGCCAGA+TGG | - | chr5_4:35367473-35367492 | Msa0849090:intron | 45.0% | |
| AATGAACAAGCTTGCACTCC+TGG | - | chr5_4:35367503-35367522 | Msa0849090:intron | 45.0% | |
| GGCATACTGGAGTAGGAATA+CGG | + | chr5_4:35367691-35367710 | None:intergenic | 45.0% | |
| TTGAACTACTTGGCGGAGAA+GGG | + | chr5_4:35367717-35367736 | None:intergenic | 45.0% | |
| TTTGAACTACTTGGCGGAGA+AGG | + | chr5_4:35367718-35367737 | None:intergenic | 45.0% | |
| GCAGAGTTTCTTGCTTCAAG+AGG | + | chr5_4:35367803-35367822 | None:intergenic | 45.0% | |
| !! | ATTATTATTAATTAATAAAG+TGG | + | chr5_4:35364728-35364747 | None:intergenic | 5.0% |
| !!! | CTTTTTTTTTAATAAAATTA+GGG | + | chr5_4:35364765-35364784 | None:intergenic | 5.0% |
| !!! | TCTTTTTTTTTAATAAAATT+AGG | + | chr5_4:35364766-35364785 | None:intergenic | 5.0% |
| !!! | ATATATATTTTTTTTTTTGA+GGG | - | chr5_4:35365633-35365652 | Msa0849090:intron | 5.0% |
| !! | ATTAAGAATAATTAATTATA+TGG | + | chr5_4:35367238-35367257 | None:intergenic | 5.0% |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr5_4:35364002-35364021 | None:intergenic | 50.0% | |
| CTGCGTATGCAGGAGCTTTA+GGG | - | chr5_4:35364001-35364020 | Msa0849090:intron | 50.0% | |
| TCTGGTGCGGAAAGCTTTCA+AGG | - | chr5_4:35364444-35364463 | Msa0849090:CDS | 50.0% | |
| CTGGTGCGGAAAGCTTTCAA+GGG | - | chr5_4:35364445-35364464 | Msa0849090:CDS | 50.0% | |
| TGCGGAAAGCTTTCAAGGGA+TGG | - | chr5_4:35364449-35364468 | Msa0849090:CDS | 50.0% | |
| GCGGAAAGCTTTCAAGGGAT+GGG | - | chr5_4:35364450-35364469 | Msa0849090:CDS | 50.0% | |
| CGGAAAGCTTTCAAGGGATG+GGG | - | chr5_4:35364451-35364470 | Msa0849090:CDS | 50.0% | |
| CAAACAGCCCCTTAGTGTAC+CGG | - | chr5_4:35364588-35364607 | Msa0849090:intron | 50.0% | |
| AAACAGCCCCTTAGTGTACC+GGG | - | chr5_4:35364589-35364608 | Msa0849090:intron | 50.0% | |
| !! | AGCTTGGCCTTGTAAGCTGA+AGG | - | chr5_4:35364652-35364671 | Msa0849090:CDS | 50.0% |
| CATCGCTCCTTCAGCTTACA+AGG | + | chr5_4:35364662-35364681 | None:intergenic | 50.0% | |
| GCAGCAGCTGATGTACAACA+AGG | - | chr5_4:35364951-35364970 | Msa0849090:intron | 50.0% | |
| GGGAATAGCTTCCTTGCCTT+TGG | - | chr5_4:35364972-35364991 | Msa0849090:intron | 50.0% | |
| ACACCAAGTGAGTTACCCAG+GGG | - | chr5_4:35365098-35365117 | Msa0849090:intron | 50.0% | |
| ! | GACTTGTTTGAGACAGGGTG+TGG | - | chr5_4:35365123-35365142 | Msa0849090:intron | 50.0% |
| ! | AAAAAAACACTGGGCTGGGC+TGG | + | chr5_4:35365160-35365179 | None:intergenic | 50.0% |
| ATTAAGCGTGCCTGTGACCT+CGG | + | chr5_4:35365312-35365331 | None:intergenic | 50.0% | |
| CACAGGCACGCTTAATGTCA+AGG | - | chr5_4:35365316-35365335 | Msa0849090:intron | 50.0% | |
| GATTCTGAGCAAGTCTGCGA+AGG | + | chr5_4:35366229-35366248 | None:intergenic | 50.0% | |
| GCTTCAACGAGTACGTCAAC+AGG | - | chr5_4:35366471-35366490 | Msa0849090:intron | 50.0% | |
| GTTGATGCTCGTCAACCCAA+TGG | + | chr5_4:35366784-35366803 | None:intergenic | 50.0% | |
| TTTCAGTTAACGGCTCGAGG+TGG | + | chr5_4:35367308-35367327 | None:intergenic | 50.0% | |
| TCTTCAGCAGTCTACTCAGC+AGG | - | chr5_4:35367350-35367369 | Msa0849090:intron | 50.0% | |
| GGATGCTTTATCTCACGGCA+TGG | - | chr5_4:35367377-35367396 | Msa0849090:intron | 50.0% | |
| GAACCTGTACCGGATACTGA+GGG | + | chr5_4:35367444-35367463 | None:intergenic | 50.0% | |
| TCAGTATCCGGTACAGGTTC+CGG | - | chr5_4:35367444-35367463 | Msa0849090:intron | 50.0% | |
| CCTTGTGAAGGAAATCCTCC+AGG | + | chr5_4:35367524-35367543 | None:intergenic | 50.0% | |
| CCTGGAGGATTTCCTTCACA+AGG | - | chr5_4:35367521-35367540 | Msa0849090:intron | 50.0% | |
| GTTATGGTTAGCACGCCCAA+GGG | - | chr5_4:35367914-35367933 | Msa0849090:CDS | 50.0% | |
| CATACGCAGGGTCCAGGAAA+GGG | + | chr5_4:35363990-35364009 | None:intergenic | 55.0% | |
| CCTAAAGCTCCTGCATACGC+AGG | + | chr5_4:35364003-35364022 | None:intergenic | 55.0% | |
| CCTGCGTATGCAGGAGCTTT+AGG | - | chr5_4:35364000-35364019 | Msa0849090:intron | 55.0% | |
| AGGGCAACCCGGTACACTAA+GGG | + | chr5_4:35364599-35364618 | None:intergenic | 55.0% | |
| ! | GAATTGGGCTGATTCTGGCG+TGG | - | chr5_4:35365011-35365030 | Msa0849090:CDS | 55.0% |
| TCTCAAACAAGTCCGCCCCT+GGG | + | chr5_4:35365116-35365135 | None:intergenic | 55.0% | |
| ! | GGGCGGACTTGTTTGAGACA+GGG | - | chr5_4:35365118-35365137 | Msa0849090:intron | 55.0% |
| ! | CGTGAGTGTTTGGACTGGAC+CGG | + | chr5_4:35365220-35365239 | None:intergenic | 55.0% |
| TTAAGCGTGCCTGTGACCTC+GGG | + | chr5_4:35365311-35365330 | None:intergenic | 55.0% | |
| ! | CAGACTTGCTCAGAATCGCG+AGG | - | chr5_4:35366232-35366251 | Msa0849090:CDS | 55.0% |
| ACTTGCTCAGAATCGCGAGG+CGG | - | chr5_4:35366235-35366254 | Msa0849090:CDS | 55.0% | |
| GAAGAGCCGGTTACGGAAGA+AGG | - | chr5_4:35366262-35366281 | Msa0849090:CDS | 55.0% | |
| TCCTCCACACCCTCAGTATC+CGG | - | chr5_4:35367432-35367451 | Msa0849090:intron | 55.0% | |
| TGTACCGGATACTGAGGGTG+TGG | + | chr5_4:35367439-35367458 | None:intergenic | 55.0% | |
| ACACCCTCAGTATCCGGTAC+AGG | - | chr5_4:35367438-35367457 | Msa0849090:intron | 55.0% | |
| GGAACCTGTACCGGATACTG+AGG | + | chr5_4:35367445-35367464 | None:intergenic | 55.0% | |
| GAACAAGCTTGCACTCCTGG+AGG | - | chr5_4:35367506-35367525 | Msa0849090:intron | 55.0% | |
| ! | AGGGAAGGGCATACTGGAGT+AGG | + | chr5_4:35367698-35367717 | None:intergenic | 55.0% |
| CTACTTGGCGGAGAAGGGAA+GGG | + | chr5_4:35367712-35367731 | None:intergenic | 55.0% | |
| ACTACTTGGCGGAGAAGGGA+AGG | + | chr5_4:35367713-35367732 | None:intergenic | 55.0% | |
| TGACGACACGTCAGACTGCA+AGG | - | chr5_4:35367841-35367860 | Msa0849090:CDS | 55.0% | |
| GACGACACGTCAGACTGCAA+GGG | - | chr5_4:35367842-35367861 | Msa0849090:CDS | 55.0% | |
| CGTTATGGTTAGCACGCCCA+AGG | - | chr5_4:35367913-35367932 | Msa0849090:CDS | 55.0% | |
| GCATACGCAGGGTCCAGGAA+AGG | + | chr5_4:35363991-35364010 | None:intergenic | 60.0% | |
| TTCCTGGACCCTGCGTATGC+AGG | - | chr5_4:35363991-35364010 | Msa0849090:intron | 60.0% | |
| GGGCAACCCGGTACACTAAG+GGG | + | chr5_4:35364598-35364617 | None:intergenic | 60.0% | |
| CAGGGCAACCCGGTACACTA+AGG | + | chr5_4:35364600-35364619 | None:intergenic | 60.0% | |
| ! | GTGCAGGGTGTTCGGATGCA+GGG | - | chr5_4:35364914-35364933 | Msa0849090:intron | 60.0% |
| CCAAGTGAGTTACCCAGGGG+CGG | - | chr5_4:35365101-35365120 | Msa0849090:intron | 60.0% | |
| GTCTCAAACAAGTCCGCCCC+TGG | + | chr5_4:35365117-35365136 | None:intergenic | 60.0% | |
| ! | GGGGCGGACTTGTTTGAGAC+AGG | - | chr5_4:35365117-35365136 | Msa0849090:intron | 60.0% |
| CGGCAAGGAAGAGCCGGTTA+CGG | - | chr5_4:35366255-35366274 | Msa0849090:CDS | 60.0% | |
| GCAGTCTACTCAGCAGGCTG+AGG | - | chr5_4:35367356-35367375 | Msa0849090:intron | 60.0% | |
| ! | ACCGGATACTGAGGGTGTGG+AGG | + | chr5_4:35367436-35367455 | None:intergenic | 60.0% |
| ! | CGGAGAAGGGAAGGGCATAC+TGG | + | chr5_4:35367704-35367723 | None:intergenic | 60.0% |
| CTCCTGCATACGCAGGGTCC+AGG | + | chr5_4:35363996-35364015 | None:intergenic | 65.0% | |
| ! | GGTGCAGGGTGTTCGGATGC+AGG | - | chr5_4:35364913-35364932 | Msa0849090:intron | 65.0% |
| CCGCCCCTGGGTAACTCACT+TGG | + | chr5_4:35365104-35365123 | None:intergenic | 65.0% | |
| !! | AACACTGGGCTGGGCTGGTG+TGG | + | chr5_4:35365155-35365174 | None:intergenic | 65.0% |
| ! | AGGTAACTCCAGGGGCGCAG+GGG | + | chr5_4:35365821-35365840 | None:intergenic | 65.0% |
| ! | GAGGTAACTCCAGGGGCGCA+GGG | + | chr5_4:35365822-35365841 | None:intergenic | 65.0% |
| ! | AGAGGTAACTCCAGGGGCGC+AGG | + | chr5_4:35365823-35365842 | None:intergenic | 65.0% |
| CTCAGAATCGCGAGGCGGCA+AGG | - | chr5_4:35366240-35366259 | Msa0849090:CDS | 65.0% | |
| GCGAGGCGGCAAGGAAGAGC+CGG | - | chr5_4:35366249-35366268 | Msa0849090:CDS | 70.0% | |
| !! | ACTCCAGGGGCGCAGGGGCG+CGG | + | chr5_4:35365816-35365835 | None:intergenic | 80.0% |
| !! | GGGGCGCAGGGGCGCGGATC+TGG | + | chr5_4:35365810-35365829 | None:intergenic | 85.0% |
| ! | GATCCGCGCCCCTGCGCCCC+TGG | - | chr5_4:35365810-35365829 | Msa0849090:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 35363324 | 35367941 | 35363324 | ID=Msa0849090;Name=Msa0849090 |
| chr5_4 | mRNA | 35363324 | 35367941 | 35363324 | ID=Msa0849090-mRNA-1;Parent=Msa0849090;Name=Msa0849090-mRNA-1;_AED=0.15;_eAED=0.17;_QI=0|0.1|0|0.90|1|1|11|0|476 |
| chr5_4 | exon | 35367800 | 35367941 | 35367800 | ID=Msa0849090-mRNA-1:exon:11844;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35367627 | 35367706 | 35367627 | ID=Msa0849090-mRNA-1:exon:11843;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35366161 | 35366382 | 35366161 | ID=Msa0849090-mRNA-1:exon:11842;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35365125 | 35365184 | 35365125 | ID=Msa0849090-mRNA-1:exon:11841;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35364982 | 35365041 | 35364982 | ID=Msa0849090-mRNA-1:exon:11840;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35364773 | 35364850 | 35364773 | ID=Msa0849090-mRNA-1:exon:11839;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35364634 | 35364685 | 35364634 | ID=Msa0849090-mRNA-1:exon:11838;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35364241 | 35364512 | 35364241 | ID=Msa0849090-mRNA-1:exon:11837;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35363723 | 35363971 | 35363723 | ID=Msa0849090-mRNA-1:exon:11836;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35363562 | 35363630 | 35363562 | ID=Msa0849090-mRNA-1:exon:11835;Parent=Msa0849090-mRNA-1 |
| chr5_4 | exon | 35363324 | 35363470 | 35363324 | ID=Msa0849090-mRNA-1:exon:11834;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35367800 | 35367941 | 35367800 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35367627 | 35367706 | 35367627 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35366161 | 35366382 | 35366161 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35365125 | 35365184 | 35365125 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35364982 | 35365041 | 35364982 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35364773 | 35364850 | 35364773 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35364634 | 35364685 | 35364634 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35364241 | 35364512 | 35364241 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35363723 | 35363971 | 35363723 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35363562 | 35363630 | 35363562 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| chr5_4 | CDS | 35363324 | 35363470 | 35363324 | ID=Msa0849090-mRNA-1:cds;Parent=Msa0849090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
