AlfalfaGEDB | Msa0849170

M. sativa cultivar zhongmu-4 / Msa0849170

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849170	XP_039688063.1	63.063	111	5	1	1	75	51	161	4.58e-36	136

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0849170	A0A072U9Z0	58.000	100	6	1	1	64	74	173	4.30e-28	109

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TFs/TRs:

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Gene ID	Type	Classification
Msa0849170	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 11 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAGGGCTTTGACAAGAGA+AGG	0.567487	5_4:+35640521	Msa0849170:CDS
CTGTCAAGGTTAGAAGAAGA+AGG	0.491761	5_4:+35640504	Msa0849170:CDS
GATGAATTAAAGCCTACGAT+TGG	0.535839	5_4:+35640293	Msa0849170:CDS
GCAAAGTGAATCTACTGTCA+AGG	0.595204	5_4:+35640490	Msa0849170:CDS
GCCAAATAAGAAGGATGGTA+AGG	0.493986	5_4:+35640466	Msa0849170:CDS
GGGTTATTTGCCAAATAAGA+AGG	0.490320	5_4:+35640457	Msa0849170:CDS
TATTTGCCAAATAAGAAGGA+TGG	0.592394	5_4:+35640461	Msa0849170:CDS
TCAAATACTTGTCCAATCGT+AGG	0.603614	5_4:-35640305	None:intergenic
TCCTTACCATCCTTCTTATT+TGG	0.212526	5_4:-35640467	None:intergenic
TGTCAAGGTTAGAAGAAGAA+GGG	0.596214	5_4:+35640505	Msa0849170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATTTGATACGTTAGCATA+AGG	+	chr5_4:35640320-35640339	Msa0849170:intron	30.0%
TATTTGCCAAATAAGAAGGA+TGG	+	chr5_4:35640461-35640480	Msa0849170:CDS	30.0%
GATGAATTAAAGCCTACGAT+TGG	+	chr5_4:35640293-35640312	Msa0849170:CDS	35.0%
TCAAATACTTGTCCAATCGT+AGG	-	chr5_4:35640308-35640327	None:intergenic	35.0%
ATAAAAATGGCATGTAGCGT+TGG	+	chr5_4:35640411-35640430	Msa0849170:intron	35.0%
GGGTTATTTGCCAAATAAGA+AGG	+	chr5_4:35640457-35640476	Msa0849170:CDS	35.0%
TCCTTACCATCCTTCTTATT+TGG	-	chr5_4:35640470-35640489	None:intergenic	35.0%
TGTCAAGGTTAGAAGAAGAA+GGG	+	chr5_4:35640505-35640524	Msa0849170:CDS	35.0%
GAAAAATACGCACTCTCTGT+CGG	+	chr5_4:35640356-35640375	Msa0849170:intron	40.0%
GCCAAATAAGAAGGATGGTA+AGG	+	chr5_4:35640466-35640485	Msa0849170:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	35640266	35640601	35640266	ID=Msa0849170;Name=Msa0849170
chr5_4	mRNA	35640266	35640601	35640266	ID=Msa0849170-mRNA-1;Parent=Msa0849170;Name=Msa0849170-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|1\|1\|1\|2\|0\|75
chr5_4	exon	35640266	35640319	35640266	ID=Msa0849170-mRNA-1:exon:11895;Parent=Msa0849170-mRNA-1
chr5_4	exon	35640428	35640601	35640428	ID=Msa0849170-mRNA-1:exon:11896;Parent=Msa0849170-mRNA-1
chr5_4	CDS	35640266	35640319	35640266	ID=Msa0849170-mRNA-1:cds;Parent=Msa0849170-mRNA-1
chr5_4	CDS	35640428	35640601	35640428	ID=Msa0849170-mRNA-1:cds;Parent=Msa0849170-mRNA-1

Gene Sequence	>Msa0849170 GAATATGAATGTGTGCCAAATTGTGATGATGAATTAAAGCCTACGATTGGACAACGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGAAGGATGGTAAGGAGCAAAGTGAATCTACTGTCAAGGTTAGAAGAAGAAGGGCTTTGACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGGTGGGGGAAGGTAAGTATGAGATAGCTTGA
Protein sequence	>Msa0849170 EYECVPNCDDELKPTIGQRWKYFVCSKEGYLPNKKDGKEQSESTVKVRRRRALTREGCNANVVFKWVGEGKYEIA*