AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0849920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0849920 MtrunA17_Chr5g0425261 61.929 394 118 10 1 379 1 377 4.11e-152 434
Msa0849920 MtrunA17_Chr5g0424801 61.168 394 121 10 1 379 1 377 5.41e-150 428
Msa0849920 MtrunA17_Chr5g0424931 55.721 402 120 12 1 361 8 392 2.63e-132 389
Msa0849920 MtrunA17_Chr5g0424741 52.745 419 140 9 1 365 1 415 6.39e-132 388
Msa0849920 MtrunA17_Chr1g0178011 56.499 377 128 10 4 361 3 362 8.69e-128 375
Msa0849920 MtrunA17_Chr5g0417281 51.282 351 143 11 3 338 1 338 1.58e-102 312
Msa0849920 MtrunA17_Chr5g0436761 48.588 354 150 11 4 338 3 343 5.36e-100 304
Msa0849920 MtrunA17_Chr2g0277461 47.000 400 177 14 1 374 1 391 7.56e-98 298
Msa0849920 MtrunA17_Chr2g0289221 52.923 325 123 13 4 312 11 321 1.15e-96 292
Msa0849920 MtrunA17_Chr5g0417211 50.617 324 133 11 4 312 3 314 1.04e-89 276
Msa0849920 MtrunA17_Chr2g0277531 47.500 320 139 13 7 312 14 318 2.25e-80 249
Msa0849920 MtrunA17_Chr3g0115271 40.731 383 168 10 3 333 6 381 9.03e-74 240
Msa0849920 MtrunA17_Chr1g0181211 36.516 419 189 13 8 364 22 425 1.90e-69 231
Msa0849920 MtrunA17_Chr5g0425661 55.288 208 81 7 13 214 37 238 7.30e-67 211
Msa0849920 MtrunA17_Chr1g0199681 37.722 395 161 14 8 337 89 463 3.31e-66 222
Msa0849920 MtrunA17_Chr4g0028971 38.083 386 169 12 13 337 12 388 1.54e-65 220
Msa0849920 MtrunA17_Chr2g0326761 37.467 379 173 13 13 336 11 380 6.37e-65 219
Msa0849920 MtrunA17_Chr7g0264171 34.264 394 190 10 8 338 26 413 9.67e-64 214
Msa0849920 MtrunA17_Chr7g0264161 36.570 309 168 10 23 312 2 301 1.30e-53 179
Msa0849920 MtrunA17_Chr2g0282961 30.184 381 225 10 3 352 44 414 3.10e-48 172
Msa0849920 MtrunA17_Chr4g0009751 33.791 364 207 12 13 355 19 369 2.82e-47 170
Msa0849920 MtrunA17_Chr2g0276781 33.903 351 200 11 13 340 23 364 1.90e-46 168
Msa0849920 MtrunA17_Chr4g0046371 30.914 372 213 12 13 355 38 394 7.40e-44 161
Msa0849920 MtrunA17_Chr2g0285461 31.933 357 211 11 1 332 8 357 1.48e-43 161
Msa0849920 MtrunA17_Chr8g0385791 32.659 346 204 11 13 337 59 396 4.08e-43 160
Msa0849920 MtrunA17_Chr4g0070181 31.339 351 202 11 8 332 18 355 1.44e-42 159
Msa0849920 MtrunA17_Chr8g0376771 29.805 359 215 9 1 332 8 356 4.82e-42 157
Msa0849920 MtrunA17_Chr2g0326281 29.056 413 227 14 13 376 56 451 8.31e-42 156
Msa0849920 MtrunA17_Chr7g0239061 30.939 362 223 11 13 356 14 366 1.79e-41 154
Msa0849920 MtrunA17_Chr1g0156321 30.925 346 213 10 8 333 38 377 2.64e-41 155
Msa0849920 MtrunA17_Chr2g0301251 29.915 351 207 11 8 332 18 355 5.47e-41 154
Msa0849920 MtrunA17_Chr3g0109391 29.201 363 196 10 8 332 21 360 1.37e-39 150
Msa0849920 MtrunA17_Chr4g0029671 30.400 375 217 10 13 355 54 416 1.38e-39 149
Msa0849920 MtrunA17_Chr5g0433301 28.933 356 210 10 6 332 17 358 1.07e-38 147
Msa0849920 MtrunA17_Chr8g0346711 31.856 361 216 12 13 355 29 377 3.04e-38 145
Msa0849920 MtrunA17_Chr8g0389081 29.944 354 201 10 10 332 29 366 1.91e-37 144
Msa0849920 MtrunA17_Chr5g0424791 51.333 150 56 5 65 209 14 151 9.42e-37 130
Msa0849920 MtrunA17_Chr5g0425651 54.955 111 40 1 235 335 1 111 1.20e-31 116
Msa0849920 MtrunA17_Chr5g0419861 46.465 99 49 4 66 161 26 123 6.26e-16 73.9
Msa0849920 MtrunA17_Chr8g0356211 23.661 224 152 6 123 332 2 220 1.00e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0849920 AT1G77850.1 39.175 388 153 12 8 334 14 379 2.69e-76 247
Msa0849920 AT1G77850.2 39.175 388 153 12 8 334 14 379 2.81e-76 247
Msa0849920 AT4G30080.1 39.950 398 154 15 13 344 19 397 1.21e-70 234
Msa0849920 AT2G28350.2 37.280 397 172 15 6 337 3 387 8.91e-64 215
Msa0849920 AT2G28350.1 37.280 397 172 15 6 337 3 387 9.29e-64 216
Msa0849920 AT1G34390.1 34.561 353 189 12 13 340 27 362 2.87e-51 181
Msa0849920 AT2G33860.1 31.746 378 220 11 13 365 54 418 1.06e-48 174
Msa0849920 AT4G23980.2 33.333 336 203 9 13 332 12 342 2.76e-48 173
Msa0849920 AT2G46530.1 33.333 348 186 12 13 332 21 350 3.11e-48 172
Msa0849920 AT4G23980.1 33.333 336 203 9 13 332 12 342 3.33e-48 173
Msa0849920 AT2G46530.3 33.333 348 186 12 13 332 42 371 3.83e-48 172
Msa0849920 AT1G34310.1 35.072 345 186 12 10 332 24 352 4.03e-48 172
Msa0849920 AT1G35520.1 34.503 342 186 12 13 332 27 352 2.38e-46 167
Msa0849920 AT1G35240.1 33.616 354 195 13 13 342 27 364 8.72e-45 163
Msa0849920 AT3G61830.1 32.448 339 201 11 13 332 25 354 3.23e-44 161
Msa0849920 AT5G62000.4 32.174 345 207 10 13 337 61 398 4.83e-44 163
Msa0849920 AT5G62000.2 32.174 345 207 10 13 337 61 398 5.05e-44 163
Msa0849920 AT5G62000.5 32.174 345 207 10 13 337 61 398 5.05e-44 163
Msa0849920 AT5G62000.3 32.174 345 207 10 13 337 61 398 5.05e-44 163
Msa0849920 AT5G62000.1 32.174 345 207 10 13 337 61 398 5.05e-44 163
Msa0849920 AT1G35540.1 32.749 342 192 11 13 332 27 352 1.56e-43 159
Msa0849920 AT1G59750.2 32.153 339 204 10 13 332 22 353 2.67e-43 160
Msa0849920 AT1G59750.1 32.153 339 204 10 13 332 22 353 2.71e-43 160
Msa0849920 AT1G59750.3 32.153 339 204 10 13 332 22 353 2.71e-43 160
Msa0849920 AT1G59750.4 32.153 339 204 10 13 332 22 353 2.84e-43 159
Msa0849920 AT1G34410.1 33.333 342 190 12 13 332 27 352 5.98e-43 158
Msa0849920 AT5G37020.2 29.213 356 205 11 8 332 17 356 6.59e-42 156
Msa0849920 AT5G37020.1 29.213 356 205 11 8 332 17 356 9.97e-42 156
Msa0849920 AT1G30330.1 31.742 356 207 12 5 332 10 357 1.56e-41 156
Msa0849920 AT1G30330.3 31.609 348 207 11 8 332 20 359 2.95e-41 155
Msa0849920 AT1G30330.2 31.609 348 207 11 8 332 20 359 2.95e-41 155
Msa0849920 AT5G20730.2 31.143 350 204 11 8 332 19 356 7.67e-41 154
Msa0849920 AT1G19220.1 29.310 348 209 10 10 332 20 355 8.85e-40 151
Msa0849920 AT5G20730.3 31.161 353 201 13 8 332 19 357 1.03e-39 150
Msa0849920 AT5G20730.1 31.161 353 201 13 8 332 19 357 1.04e-39 150
Msa0849920 AT5G60450.2 29.474 380 215 14 10 355 38 398 4.94e-39 148
Msa0849920 AT5G60450.1 29.474 380 215 14 10 355 62 422 5.95e-39 148
Msa0849920 AT1G19850.1 30.925 346 212 11 9 333 50 389 1.49e-38 147
Msa0849920 AT1G19850.2 30.925 346 212 11 9 333 39 378 1.82e-38 147
Msa0849920 AT1G34170.1 30.028 353 216 12 13 346 25 365 5.13e-36 137
Msa0849920 AT3G61830.2 32.281 285 169 9 64 332 27 303 1.57e-34 134
Msa0849920 AT2G46530.2 34.800 250 132 8 100 332 28 263 1.15e-33 131
Msa0849920 AT2G33860.2 31.461 267 158 8 117 365 2 261 3.22e-32 126
Msa0849920 AT1G34170.2 28.448 348 202 11 13 346 25 339 1.58e-31 125
Msa0849920 AT1G34170.3 28.448 348 202 11 13 346 25 339 3.13e-31 124
Msa0849920 AT1G43950.1 36.150 213 106 8 13 212 27 222 1.74e-29 114
Msa0849920 AT5G37020.3 28.309 272 160 9 85 332 1 261 2.22e-26 111
Msa0849920 ATMG00940.1 41.111 90 43 1 201 290 44 123 5.43e-12 63.9

Find 111 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTGGATTGTTAAAATT+TGG 0.112967 5_4:-37895908 None:intergenic
ATGAAGATTGTTTGGAATTC+TGG 0.127863 5_4:+37896295 Msa0849920:CDS
CTTCTTCGAATTCCCCTAAT+TGG 0.184271 5_4:+37896383 Msa0849920:CDS
GTTAACCGAGTCGGCGGTTT+TGG 0.206731 5_4:+37896168 Msa0849920:CDS
GCATGTTCCAAGTGACCTTT+TGG 0.275383 5_4:-37895590 None:intergenic
AGGAGGGTGAAGAGGGAGGC+TGG 0.281049 5_4:+37896134 Msa0849920:CDS
GTGAAGAGGGAGGCTGGAAG+AGG 0.299344 5_4:+37896140 Msa0849920:CDS
CCTGAAGAATGTTCCAATTA+GGG 0.299732 5_4:-37896396 None:intergenic
CCACAGGAGGAGCTGGTTCT+TGG 0.300062 5_4:-37895778 None:intergenic
ACCTGAAGAATGTTCCAATT+AGG 0.304192 5_4:-37896397 None:intergenic
GCGTTGTCGAAGGCAAAATT+TGG 0.307258 5_4:+37895507 Msa0849920:CDS
TGCCAAGGATTGACTAGGTT+TGG 0.313165 5_4:-37897058 None:intergenic
TGTATTATCCAAGTCATAAT+TGG 0.331214 5_4:+37896233 Msa0849920:CDS
CCCTAATTGGAACATTCTTC+AGG 0.342494 5_4:+37896396 Msa0849920:CDS
TTTGGATTCTGCGGGATATT+AGG 0.363066 5_4:-37897040 None:intergenic
CAAATTCTACATTCAATTGC+AGG 0.366385 5_4:+37897181 Msa0849920:CDS
TGGAATCTTGACGCCGGGGC+CGG 0.386761 5_4:-37895540 None:intergenic
ATGACGCTATGAAGATTGTT+TGG 0.387773 5_4:+37896287 Msa0849920:CDS
GTAGAGAAACGGTGTCTATC+AGG 0.389463 5_4:-37896001 None:intergenic
CCGATGTTCAAGGCCAAGTC+TGG 0.398680 5_4:+37895951 Msa0849920:CDS
TGAAGAGGGAGGCTGGAAGA+GGG 0.400454 5_4:+37896141 Msa0849920:CDS
TAAACGACTGAGTTCAGCTT+TGG 0.405710 5_4:-37895560 None:intergenic
TGAAGATTGTTTGGAATTCT+GGG 0.411575 5_4:+37896296 Msa0849920:CDS
AATTGAATGTAGAATTTGTT+GGG 0.424854 5_4:-37897176 None:intergenic
TAACAATCCAATGCCGTCTC+AGG 0.429929 5_4:+37895916 Msa0849920:CDS
GGTGAGATTGACAGTGGAGG+AGG 0.429947 5_4:-37897116 None:intergenic
CGCTGAGATGATGCAGAGAT+AGG 0.432301 5_4:-37895669 None:intergenic
AGCTTTGGAATCTTGACGCC+GGG 0.433725 5_4:-37895545 None:intergenic
TACCGGAGTGAGGATGAGTT+TGG 0.435570 5_4:-37895732 None:intergenic
AAGGAGACTGTCTGAGGTAG+TGG 0.438861 5_4:-37895623 None:intergenic
CCAAGGTTTGGCTACGCGTC+AGG 0.440106 5_4:-37897220 None:intergenic
CACCCTCCTTCTTTATGTGC+CGG 0.454754 5_4:-37896120 None:intergenic
CGTTTCTCTACTGGCTGGAC+TGG 0.455390 5_4:+37896013 Msa0849920:CDS
CATAAAGAAGGAGGGTGAAG+AGG 0.457435 5_4:+37896126 Msa0849920:CDS
GATAGACACCGTTTCTCTAC+TGG 0.461405 5_4:+37896004 Msa0849920:CDS
CAATTGAATGTAGAATTTGT+TGG 0.464823 5_4:-37897177 None:intergenic
TTATCATAGGTTAACTGGGA+TGG 0.471984 5_4:+37897016 Msa0849920:intron
GAGGAGCTGGTTCTTGGACT+TGG 0.482484 5_4:-37895772 None:intergenic
ACACCACCGTCAATTGTTAC+CGG 0.486756 5_4:-37895749 None:intergenic
CCTTCGACAACGCGTGGCTG+AGG 0.488355 5_4:-37895497 None:intergenic
TTTGAAGAATGATCAGTCCC+TGG 0.489333 5_4:+37896336 Msa0849920:CDS
CAATTAGGGGAATTCGAAGA+AGG 0.495700 5_4:-37896382 None:intergenic
AGAATGAAGATCATGAAGAA+AGG 0.497234 5_4:-37895642 None:intergenic
CTCACTCCGGTAACAATTGA+CGG 0.499475 5_4:+37895743 Msa0849920:CDS
CCATCTTCGTCGGGAACCAC+AGG 0.500195 5_4:-37895794 None:intergenic
ATCCAAACCTAGTCAATCCT+TGG 0.508187 5_4:+37897056 Msa0849920:CDS
CACATTGGAGATTGTTCCCA+GGG 0.513167 5_4:-37896353 None:intergenic
CAACCTGCCAAGGATTGACT+AGG 0.513736 5_4:-37897063 None:intergenic
TCGACAACGCGTGGCTGAGG+CGG 0.515631 5_4:-37895494 None:intergenic
AAAAGCTCCTGAGACGGCAT+TGG 0.515807 5_4:-37895923 None:intergenic
AAAATTTGGCAGACATGCGC+CGG 0.516610 5_4:+37895521 Msa0849920:CDS
GAGGAGGAAGTCGAAGGTGC+AGG 0.519616 5_4:-37897100 None:intergenic
AAGATTGTTTCCATCTTCGT+CGG 0.521879 5_4:-37895804 None:intergenic
TATAGTTGAACCTCCAGACT+TGG 0.526294 5_4:-37895964 None:intergenic
TCGGGAACCACAGGAGGAGC+TGG 0.527028 5_4:-37895785 None:intergenic
ATAAAGAAGGAGGGTGAAGA+GGG 0.528210 5_4:+37896127 Msa0849920:CDS
AGTCGAAGGTGCAGGTATGT+TGG 0.528919 5_4:-37897092 None:intergenic
TGGCTGAGGCGGCAGAGACA+TGG 0.530662 5_4:-37895483 None:intergenic
CCTCAGCCACGCGTTGTCGA+AGG 0.531551 5_4:+37895497 Msa0849920:CDS
TGACTAGGTTTGGATTCTGC+GGG 0.534959 5_4:-37897048 None:intergenic
GATGAACTCTCAGCAAGTCT+AGG 0.537540 5_4:-37897151 None:intergenic
AGATTGTTTCCATCTTCGTC+GGG 0.537991 5_4:-37895803 None:intergenic
AGCTTCCAAAACCGCCGACT+CGG 0.538802 5_4:-37896173 None:intergenic
CCTGTGGTTCCCGACGAAGA+TGG 0.542076 5_4:+37895794 Msa0849920:CDS
AAACCTAGTCAATCCTTGGC+AGG 0.546100 5_4:+37897060 Msa0849920:CDS
CCAGACTTGGCCTTGAACAT+CGG 0.546481 5_4:-37895951 None:intergenic
AGGAGACTGTCTGAGGTAGT+GGG 0.547225 5_4:-37895622 None:intergenic
TTGAAGAATGATCAGTCCCT+GGG 0.547852 5_4:+37896337 Msa0849920:CDS
TTTGGAAGCTGCGGAATTGG+CGG 0.551783 5_4:+37896186 Msa0849920:CDS
ACACATTGGAGATTGTTCCC+AGG 0.561486 5_4:-37896354 None:intergenic
CATGAAAACAATGGAATCGT+CGG 0.561963 5_4:-37896062 None:intergenic
CTCAGCGGTTGATCTTCTTG+CGG 0.563754 5_4:+37895685 Msa0849920:CDS
TTGGAAACTTCAACCTGCCA+AGG 0.564377 5_4:-37897073 None:intergenic
CAGTCCAGCCAGTAGAGAAA+CGG 0.568162 5_4:-37896012 None:intergenic
GACACCGTTTCTCTACTGGC+TGG 0.569539 5_4:+37896008 Msa0849920:CDS
CAGCTTTGGAATCTTGACGC+CGG 0.579151 5_4:-37895546 None:intergenic
TTGACTAGGTTTGGATTCTG+CGG 0.579536 5_4:-37897049 None:intergenic
CGCCAAACTCATCCTCACTC+CGG 0.579944 5_4:+37895730 Msa0849920:CDS
AATACGCCGGCACATAAAGA+AGG 0.582192 5_4:+37896114 Msa0849920:CDS
GAGTTTGGCGAAAACTTCAT+CGG 0.584189 5_4:-37895717 None:intergenic
AAATCAGACCAATTATGACT+TGG 0.584394 5_4:-37896241 None:intergenic
TCTGCGGGAGAGTTATCTGT+TGG 0.584504 5_4:+37896091 Msa0849920:CDS
AAATTCTACATTCAATTGCA+GGG 0.586656 5_4:+37897182 Msa0849920:CDS
CATTCAATTGCAGGGTCGAG+TGG 0.586792 5_4:+37897190 Msa0849920:CDS
ACTGTCTGAGGTAGTGGGGA+AGG 0.593489 5_4:-37895617 None:intergenic
CGAAGAAGGATTAGACACAT+TGG 0.604406 5_4:-37896368 None:intergenic
CTGAAGAATGTTCCAATTAG+GGG 0.615518 5_4:-37896395 None:intergenic
CGTCAATTGTTACCGGAGTG+AGG 0.618461 5_4:-37895742 None:intergenic
GCGAAAACTTCATCGGTGTG+AGG 0.620277 5_4:-37895710 None:intergenic
ACGCCGGCACATAAAGAAGG+AGG 0.622809 5_4:+37896117 Msa0849920:CDS
GAGGGAGAAGTTAACCGAGT+CGG 0.627289 5_4:+37896159 Msa0849920:CDS
ATTGAATGTAGAATTTGTTG+GGG 0.627689 5_4:-37897175 None:intergenic
CCAAGAACCAGCTCCTCCTG+TGG 0.630584 5_4:+37895778 Msa0849920:CDS
AAGAAGGAGGGTGAAGAGGG+AGG 0.636512 5_4:+37896130 Msa0849920:CDS
ATGTTCAAGGCCAAGTCTGG+AGG 0.637068 5_4:+37895954 Msa0849920:CDS
CGCCGGCACATAAAGAAGGA+GGG 0.641777 5_4:+37896118 Msa0849920:CDS
GGAGAAGTTAACCGAGTCGG+CGG 0.643380 5_4:+37896162 Msa0849920:CDS
TGAGGTGAGATTGACAGTGG+AGG 0.644690 5_4:-37897119 None:intergenic
TCTTCGTCGGGAACCACAGG+AGG 0.646761 5_4:-37895791 None:intergenic
TCTATCAGGATTCTTGCGAA+AGG 0.647881 5_4:-37895987 None:intergenic
GGAGACTGTCTGAGGTAGTG+GGG 0.652562 5_4:-37895621 None:intergenic
TTGAATGTAGAATTTGTTGG+GGG 0.657320 5_4:-37897174 None:intergenic
AGTTATCTGTTGGAATACGC+CGG 0.657595 5_4:+37896101 Msa0849920:CDS
TGAAGAAAGGAGACTGTCTG+AGG 0.660800 5_4:-37895629 None:intergenic
CTATCTCTGCATCATCTCAG+CGG 0.677491 5_4:+37895670 Msa0849920:CDS
TGTTGAGGTGAGATTGACAG+TGG 0.681746 5_4:-37897122 None:intergenic
GCTTTGGAATCTTGACGCCG+GGG 0.693460 5_4:-37895544 None:intergenic
TGAATGTAGAATTTGTTGGG+GGG 0.703111 5_4:-37897173 None:intergenic
ACAGTGGAGGAGGAAGTCGA+AGG 0.704506 5_4:-37897106 None:intergenic
TTGTGTAAGAGTCTTGACGT+AGG 0.718748 5_4:-37895831 None:intergenic
ACTCCGGTAACAATTGACGG+TGG 0.780092 5_4:+37895746 Msa0849920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATCTAATTATGTATT+TGG - chr5_4:37896451-37896470 None:intergenic 10.0%
!! TTACAAAATATAATTACAAT+TGG - chr5_4:37896602-37896621 None:intergenic 10.0%
!! TATGATAAAAAGATAAAAAA+TGG - chr5_4:37897004-37897023 None:intergenic 10.0%
!!! ATTTTTTATCTTTTTATCAT+AGG + chr5_4:37897003-37897022 Msa0849920:intron 10.0%
!! AAATAATCTAATTATGTATT+TGG - chr5_4:37896451-37896470 None:intergenic 10.0%
!! TTACAAAATATAATTACAAT+TGG - chr5_4:37896602-37896621 None:intergenic 10.0%
!! TATGATAAAAAGATAAAAAA+TGG - chr5_4:37897004-37897023 None:intergenic 10.0%
!!! ATTTTTTATCTTTTTATCAT+AGG + chr5_4:37897003-37897022 Msa0849920:intron 10.0%
!! TGCAATTACATATAAAATAA+AGG + chr5_4:37896662-37896681 Msa0849920:intron 15.0%
!! TGCAATTACATATAAAATAA+AGG + chr5_4:37896662-37896681 Msa0849920:intron 15.0%
!! TGTATATCTTTGTTCTTTAT+AGG + chr5_4:37896569-37896588 Msa0849920:intron 20.0%
!! CTATACATAACAGAAAATTA+TGG - chr5_4:37896625-37896644 None:intergenic 20.0%
!! TTTCTTCGTTTAATGTTATT+CGG - chr5_4:37896707-37896726 None:intergenic 20.0%
!! AATAACATTAAACGAAGAAA+TGG + chr5_4:37896707-37896726 Msa0849920:intron 20.0%
!!! AATTGAATGTAGAATTTGTT+GGG - chr5_4:37897179-37897198 None:intergenic 20.0%
!! TGTATATCTTTGTTCTTTAT+AGG + chr5_4:37896569-37896588 Msa0849920:intron 20.0%
!! CTATACATAACAGAAAATTA+TGG - chr5_4:37896625-37896644 None:intergenic 20.0%
!! TTTCTTCGTTTAATGTTATT+CGG - chr5_4:37896707-37896726 None:intergenic 20.0%
!! AATAACATTAAACGAAGAAA+TGG + chr5_4:37896707-37896726 Msa0849920:intron 20.0%
!!! AATTGAATGTAGAATTTGTT+GGG - chr5_4:37897179-37897198 None:intergenic 20.0%
!! AGAGTTTTTCATGAAAACAA+TGG - chr5_4:37896074-37896093 None:intergenic 25.0%
! TGTATTATCCAAGTCATAAT+TGG + chr5_4:37896233-37896252 Msa0849920:CDS 25.0%
! CTGAAACTATAATTAGATCA+TGG + chr5_4:37896523-37896542 Msa0849920:intron 25.0%
! AAATAAAGATCCTACTTAGA+AGG - chr5_4:37896896-37896915 None:intergenic 25.0%
!! TCTTTTTATCATAGGTTAAC+TGG + chr5_4:37897011-37897030 Msa0849920:intron 25.0%
!! CTTTTTATCATAGGTTAACT+GGG + chr5_4:37897012-37897031 Msa0849920:intron 25.0%
!!! ATTGAATGTAGAATTTGTTG+GGG - chr5_4:37897178-37897197 None:intergenic 25.0%
! CAATTGAATGTAGAATTTGT+TGG - chr5_4:37897180-37897199 None:intergenic 25.0%
! AAATTCTACATTCAATTGCA+GGG + chr5_4:37897182-37897201 Msa0849920:CDS 25.0%
!! AGAGTTTTTCATGAAAACAA+TGG - chr5_4:37896074-37896093 None:intergenic 25.0%
! TGTATTATCCAAGTCATAAT+TGG + chr5_4:37896233-37896252 Msa0849920:CDS 25.0%
! CTGAAACTATAATTAGATCA+TGG + chr5_4:37896523-37896542 Msa0849920:intron 25.0%
! AAATAAAGATCCTACTTAGA+AGG - chr5_4:37896896-37896915 None:intergenic 25.0%
!! TCTTTTTATCATAGGTTAAC+TGG + chr5_4:37897011-37897030 Msa0849920:intron 25.0%
!! CTTTTTATCATAGGTTAACT+GGG + chr5_4:37897012-37897031 Msa0849920:intron 25.0%
!!! ATTGAATGTAGAATTTGTTG+GGG - chr5_4:37897178-37897197 None:intergenic 25.0%
! CAATTGAATGTAGAATTTGT+TGG - chr5_4:37897180-37897199 None:intergenic 25.0%
! AAATTCTACATTCAATTGCA+GGG + chr5_4:37897182-37897201 Msa0849920:CDS 25.0%
! GTCGTTTACTATTTTCCAAA+AGG + chr5_4:37895575-37895594 Msa0849920:CDS 30.0%
AGAATGAAGATCATGAAGAA+AGG - chr5_4:37895645-37895664 None:intergenic 30.0%
! GGCATTGGATTGTTAAAATT+TGG - chr5_4:37895911-37895930 None:intergenic 30.0%
! TGTTTTCATGAAAAACTCTG+CGG + chr5_4:37896075-37896094 Msa0849920:CDS 30.0%
AAATCAGACCAATTATGACT+TGG - chr5_4:37896244-37896263 None:intergenic 30.0%
!! TCATAATTGGTCTGATTTTG+TGG + chr5_4:37896246-37896265 Msa0849920:CDS 30.0%
! ATGAAGATTGTTTGGAATTC+TGG + chr5_4:37896295-37896314 Msa0849920:CDS 30.0%
! TGAAGATTGTTTGGAATTCT+GGG + chr5_4:37896296-37896315 Msa0849920:CDS 30.0%
TATGTAATTGCAAAACCACT+CGG - chr5_4:37896654-37896673 None:intergenic 30.0%
ACGTATTGTAGTCATAGATA+AGG + chr5_4:37896763-37896782 Msa0849920:intron 30.0%
CGTATTGTAGTCATAGATAA+GGG + chr5_4:37896764-37896783 Msa0849920:intron 30.0%
GTATTGTAGTCATAGATAAG+GGG + chr5_4:37896765-37896784 Msa0849920:intron 30.0%
ATTAAGTTCGAGACTTAATG+TGG - chr5_4:37896854-37896873 None:intergenic 30.0%
AGTTTAAGAACCTTCTAAGT+AGG + chr5_4:37896883-37896902 Msa0849920:intron 30.0%
!! TTGAATGTAGAATTTGTTGG+GGG - chr5_4:37897177-37897196 None:intergenic 30.0%
CAAATTCTACATTCAATTGC+AGG + chr5_4:37897181-37897200 Msa0849920:CDS 30.0%
! GTCGTTTACTATTTTCCAAA+AGG + chr5_4:37895575-37895594 Msa0849920:CDS 30.0%
AGAATGAAGATCATGAAGAA+AGG - chr5_4:37895645-37895664 None:intergenic 30.0%
! GGCATTGGATTGTTAAAATT+TGG - chr5_4:37895911-37895930 None:intergenic 30.0%
! TGTTTTCATGAAAAACTCTG+CGG + chr5_4:37896075-37896094 Msa0849920:CDS 30.0%
AAATCAGACCAATTATGACT+TGG - chr5_4:37896244-37896263 None:intergenic 30.0%
!! TCATAATTGGTCTGATTTTG+TGG + chr5_4:37896246-37896265 Msa0849920:CDS 30.0%
! ATGAAGATTGTTTGGAATTC+TGG + chr5_4:37896295-37896314 Msa0849920:CDS 30.0%
! TGAAGATTGTTTGGAATTCT+GGG + chr5_4:37896296-37896315 Msa0849920:CDS 30.0%
TATGTAATTGCAAAACCACT+CGG - chr5_4:37896654-37896673 None:intergenic 30.0%
ACGTATTGTAGTCATAGATA+AGG + chr5_4:37896763-37896782 Msa0849920:intron 30.0%
CGTATTGTAGTCATAGATAA+GGG + chr5_4:37896764-37896783 Msa0849920:intron 30.0%
GTATTGTAGTCATAGATAAG+GGG + chr5_4:37896765-37896784 Msa0849920:intron 30.0%
ATTAAGTTCGAGACTTAATG+TGG - chr5_4:37896854-37896873 None:intergenic 30.0%
AGTTTAAGAACCTTCTAAGT+AGG + chr5_4:37896883-37896902 Msa0849920:intron 30.0%
!! TTGAATGTAGAATTTGTTGG+GGG - chr5_4:37897177-37897196 None:intergenic 30.0%
CAAATTCTACATTCAATTGC+AGG + chr5_4:37897181-37897200 Msa0849920:CDS 30.0%
! CTATTTTCCAAAAGGTCACT+TGG + chr5_4:37895583-37895602 Msa0849920:CDS 35.0%
AAGATTGTTTCCATCTTCGT+CGG - chr5_4:37895807-37895826 None:intergenic 35.0%
CATGAAAACAATGGAATCGT+CGG - chr5_4:37896065-37896084 None:intergenic 35.0%
! GTTTTCATGAAAAACTCTGC+GGG + chr5_4:37896076-37896095 Msa0849920:CDS 35.0%
!! TAATTGGTCTGATTTTGTGG+TGG + chr5_4:37896249-37896268 Msa0849920:CDS 35.0%
ATGACGCTATGAAGATTGTT+TGG + chr5_4:37896287-37896306 Msa0849920:CDS 35.0%
CTGAAGAATGTTCCAATTAG+GGG - chr5_4:37896398-37896417 None:intergenic 35.0%
CCTGAAGAATGTTCCAATTA+GGG - chr5_4:37896399-37896418 None:intergenic 35.0%
ACCTGAAGAATGTTCCAATT+AGG - chr5_4:37896400-37896419 None:intergenic 35.0%
ATTAAACGAAGAAATGGAGC+TGG + chr5_4:37896713-37896732 Msa0849920:intron 35.0%
ATCTATGACTACAATACGTC+CGG - chr5_4:37896762-37896781 None:intergenic 35.0%
TCATAACAAAGCACAATGTC+CGG - chr5_4:37896815-37896834 None:intergenic 35.0%
TTATCATAGGTTAACTGGGA+TGG + chr5_4:37897016-37897035 Msa0849920:intron 35.0%
!! TGAATGTAGAATTTGTTGGG+GGG - chr5_4:37897176-37897195 None:intergenic 35.0%
! CTATTTTCCAAAAGGTCACT+TGG + chr5_4:37895583-37895602 Msa0849920:CDS 35.0%
AAGATTGTTTCCATCTTCGT+CGG - chr5_4:37895807-37895826 None:intergenic 35.0%
CATGAAAACAATGGAATCGT+CGG - chr5_4:37896065-37896084 None:intergenic 35.0%
! GTTTTCATGAAAAACTCTGC+GGG + chr5_4:37896076-37896095 Msa0849920:CDS 35.0%
!! TAATTGGTCTGATTTTGTGG+TGG + chr5_4:37896249-37896268 Msa0849920:CDS 35.0%
ATGACGCTATGAAGATTGTT+TGG + chr5_4:37896287-37896306 Msa0849920:CDS 35.0%
CTGAAGAATGTTCCAATTAG+GGG - chr5_4:37896398-37896417 None:intergenic 35.0%
CCTGAAGAATGTTCCAATTA+GGG - chr5_4:37896399-37896418 None:intergenic 35.0%
ACCTGAAGAATGTTCCAATT+AGG - chr5_4:37896400-37896419 None:intergenic 35.0%
ATTAAACGAAGAAATGGAGC+TGG + chr5_4:37896713-37896732 Msa0849920:intron 35.0%
ATCTATGACTACAATACGTC+CGG - chr5_4:37896762-37896781 None:intergenic 35.0%
TCATAACAAAGCACAATGTC+CGG - chr5_4:37896815-37896834 None:intergenic 35.0%
TTATCATAGGTTAACTGGGA+TGG + chr5_4:37897016-37897035 Msa0849920:intron 35.0%
!! TGAATGTAGAATTTGTTGGG+GGG - chr5_4:37897176-37897195 None:intergenic 35.0%
TAAACGACTGAGTTCAGCTT+TGG - chr5_4:37895563-37895582 None:intergenic 40.0%
GAGTTTGGCGAAAACTTCAT+CGG - chr5_4:37895720-37895739 None:intergenic 40.0%
AGATTGTTTCCATCTTCGTC+GGG - chr5_4:37895806-37895825 None:intergenic 40.0%
TTGTGTAAGAGTCTTGACGT+AGG - chr5_4:37895834-37895853 None:intergenic 40.0%
! CTTTTTCTCACCGATGTTCA+AGG + chr5_4:37895941-37895960 Msa0849920:CDS 40.0%
TATAGTTGAACCTCCAGACT+TGG - chr5_4:37895967-37895986 None:intergenic 40.0%
TCTATCAGGATTCTTGCGAA+AGG - chr5_4:37895990-37896009 None:intergenic 40.0%
AGTTATCTGTTGGAATACGC+CGG + chr5_4:37896101-37896120 Msa0849920:CDS 40.0%
ATAAAGAAGGAGGGTGAAGA+GGG + chr5_4:37896127-37896146 Msa0849920:CDS 40.0%
TTTGAAGAATGATCAGTCCC+TGG + chr5_4:37896336-37896355 Msa0849920:CDS 40.0%
TTGAAGAATGATCAGTCCCT+GGG + chr5_4:37896337-37896356 Msa0849920:CDS 40.0%
CGAAGAAGGATTAGACACAT+TGG - chr5_4:37896371-37896390 None:intergenic 40.0%
CAATTAGGGGAATTCGAAGA+AGG - chr5_4:37896385-37896404 None:intergenic 40.0%
CTTCTTCGAATTCCCCTAAT+TGG + chr5_4:37896383-37896402 Msa0849920:CDS 40.0%
CCCTAATTGGAACATTCTTC+AGG + chr5_4:37896396-37896415 Msa0849920:CDS 40.0%
TATGTATAGCTTTCTCCGAG+TGG + chr5_4:37896636-37896655 Msa0849920:intron 40.0%
TTGACTGCAAACAGTTAGTC+CGG + chr5_4:37896740-37896759 Msa0849920:intron 40.0%
GTTCGAGACTTAATGTGGTA+TGG - chr5_4:37896849-37896868 None:intergenic 40.0%
TTTGGATTCTGCGGGATATT+AGG - chr5_4:37897043-37897062 None:intergenic 40.0%
TTGACTAGGTTTGGATTCTG+CGG - chr5_4:37897052-37897071 None:intergenic 40.0%
ATCCAAACCTAGTCAATCCT+TGG + chr5_4:37897056-37897075 Msa0849920:CDS 40.0%
! AAGTCTAGGAGCTTTTGTTG+AGG - chr5_4:37897140-37897159 None:intergenic 40.0%
TAAACGACTGAGTTCAGCTT+TGG - chr5_4:37895563-37895582 None:intergenic 40.0%
GAGTTTGGCGAAAACTTCAT+CGG - chr5_4:37895720-37895739 None:intergenic 40.0%
AGATTGTTTCCATCTTCGTC+GGG - chr5_4:37895806-37895825 None:intergenic 40.0%
TTGTGTAAGAGTCTTGACGT+AGG - chr5_4:37895834-37895853 None:intergenic 40.0%
! CTTTTTCTCACCGATGTTCA+AGG + chr5_4:37895941-37895960 Msa0849920:CDS 40.0%
TATAGTTGAACCTCCAGACT+TGG - chr5_4:37895967-37895986 None:intergenic 40.0%
TCTATCAGGATTCTTGCGAA+AGG - chr5_4:37895990-37896009 None:intergenic 40.0%
AGTTATCTGTTGGAATACGC+CGG + chr5_4:37896101-37896120 Msa0849920:CDS 40.0%
ATAAAGAAGGAGGGTGAAGA+GGG + chr5_4:37896127-37896146 Msa0849920:CDS 40.0%
TTTGAAGAATGATCAGTCCC+TGG + chr5_4:37896336-37896355 Msa0849920:CDS 40.0%
TTGAAGAATGATCAGTCCCT+GGG + chr5_4:37896337-37896356 Msa0849920:CDS 40.0%
CGAAGAAGGATTAGACACAT+TGG - chr5_4:37896371-37896390 None:intergenic 40.0%
CAATTAGGGGAATTCGAAGA+AGG - chr5_4:37896385-37896404 None:intergenic 40.0%
CTTCTTCGAATTCCCCTAAT+TGG + chr5_4:37896383-37896402 Msa0849920:CDS 40.0%
CCCTAATTGGAACATTCTTC+AGG + chr5_4:37896396-37896415 Msa0849920:CDS 40.0%
TATGTATAGCTTTCTCCGAG+TGG + chr5_4:37896636-37896655 Msa0849920:intron 40.0%
TTGACTGCAAACAGTTAGTC+CGG + chr5_4:37896740-37896759 Msa0849920:intron 40.0%
GTTCGAGACTTAATGTGGTA+TGG - chr5_4:37896849-37896868 None:intergenic 40.0%
TTTGGATTCTGCGGGATATT+AGG - chr5_4:37897043-37897062 None:intergenic 40.0%
TTGACTAGGTTTGGATTCTG+CGG - chr5_4:37897052-37897071 None:intergenic 40.0%
ATCCAAACCTAGTCAATCCT+TGG + chr5_4:37897056-37897075 Msa0849920:CDS 40.0%
! AAGTCTAGGAGCTTTTGTTG+AGG - chr5_4:37897140-37897159 None:intergenic 40.0%
GCGTTGTCGAAGGCAAAATT+TGG + chr5_4:37895507-37895526 Msa0849920:CDS 45.0%
AAAATTTGGCAGACATGCGC+CGG + chr5_4:37895521-37895540 Msa0849920:CDS 45.0%
! GCATGTTCCAAGTGACCTTT+TGG - chr5_4:37895593-37895612 None:intergenic 45.0%
TGAAGAAAGGAGACTGTCTG+AGG - chr5_4:37895632-37895651 None:intergenic 45.0%
CTATCTCTGCATCATCTCAG+CGG + chr5_4:37895670-37895689 Msa0849920:CDS 45.0%
CTCACTCCGGTAACAATTGA+CGG + chr5_4:37895743-37895762 Msa0849920:CDS 45.0%
ACACCACCGTCAATTGTTAC+CGG - chr5_4:37895752-37895771 None:intergenic 45.0%
TAACAATCCAATGCCGTCTC+AGG + chr5_4:37895916-37895935 Msa0849920:CDS 45.0%
GTGAGAAAAAGCTCCTGAGA+CGG - chr5_4:37895932-37895951 None:intergenic 45.0%
GTAGAGAAACGGTGTCTATC+AGG - chr5_4:37896004-37896023 None:intergenic 45.0%
GATAGACACCGTTTCTCTAC+TGG + chr5_4:37896004-37896023 Msa0849920:CDS 45.0%
!!! TACTGGCTGGACTGGTTTTA+GGG + chr5_4:37896021-37896040 Msa0849920:CDS 45.0%
AATACGCCGGCACATAAAGA+AGG + chr5_4:37896114-37896133 Msa0849920:CDS 45.0%
CATAAAGAAGGAGGGTGAAG+AGG + chr5_4:37896126-37896145 Msa0849920:CDS 45.0%
CACATTGGAGATTGTTCCCA+GGG - chr5_4:37896356-37896375 None:intergenic 45.0%
ACACATTGGAGATTGTTCCC+AGG - chr5_4:37896357-37896376 None:intergenic 45.0%
TCACTTGAAGCCAGTTAGTC+CGG + chr5_4:37896793-37896812 Msa0849920:intron 45.0%
TGACTAGGTTTGGATTCTGC+GGG - chr5_4:37897051-37897070 None:intergenic 45.0%
TGCCAAGGATTGACTAGGTT+TGG - chr5_4:37897061-37897080 None:intergenic 45.0%
AAACCTAGTCAATCCTTGGC+AGG + chr5_4:37897060-37897079 Msa0849920:CDS 45.0%
TTGGAAACTTCAACCTGCCA+AGG - chr5_4:37897076-37897095 None:intergenic 45.0%
TGTTGAGGTGAGATTGACAG+TGG - chr5_4:37897125-37897144 None:intergenic 45.0%
GATGAACTCTCAGCAAGTCT+AGG - chr5_4:37897154-37897173 None:intergenic 45.0%
GCGTTGTCGAAGGCAAAATT+TGG + chr5_4:37895507-37895526 Msa0849920:CDS 45.0%
AAAATTTGGCAGACATGCGC+CGG + chr5_4:37895521-37895540 Msa0849920:CDS 45.0%
! GCATGTTCCAAGTGACCTTT+TGG - chr5_4:37895593-37895612 None:intergenic 45.0%
TGAAGAAAGGAGACTGTCTG+AGG - chr5_4:37895632-37895651 None:intergenic 45.0%
CTATCTCTGCATCATCTCAG+CGG + chr5_4:37895670-37895689 Msa0849920:CDS 45.0%
CTCACTCCGGTAACAATTGA+CGG + chr5_4:37895743-37895762 Msa0849920:CDS 45.0%
ACACCACCGTCAATTGTTAC+CGG - chr5_4:37895752-37895771 None:intergenic 45.0%
TAACAATCCAATGCCGTCTC+AGG + chr5_4:37895916-37895935 Msa0849920:CDS 45.0%
GTGAGAAAAAGCTCCTGAGA+CGG - chr5_4:37895932-37895951 None:intergenic 45.0%
GTAGAGAAACGGTGTCTATC+AGG - chr5_4:37896004-37896023 None:intergenic 45.0%
GATAGACACCGTTTCTCTAC+TGG + chr5_4:37896004-37896023 Msa0849920:CDS 45.0%
!!! TACTGGCTGGACTGGTTTTA+GGG + chr5_4:37896021-37896040 Msa0849920:CDS 45.0%
AATACGCCGGCACATAAAGA+AGG + chr5_4:37896114-37896133 Msa0849920:CDS 45.0%
CATAAAGAAGGAGGGTGAAG+AGG + chr5_4:37896126-37896145 Msa0849920:CDS 45.0%
CACATTGGAGATTGTTCCCA+GGG - chr5_4:37896356-37896375 None:intergenic 45.0%
ACACATTGGAGATTGTTCCC+AGG - chr5_4:37896357-37896376 None:intergenic 45.0%
TCACTTGAAGCCAGTTAGTC+CGG + chr5_4:37896793-37896812 Msa0849920:intron 45.0%
TGACTAGGTTTGGATTCTGC+GGG - chr5_4:37897051-37897070 None:intergenic 45.0%
TGCCAAGGATTGACTAGGTT+TGG - chr5_4:37897061-37897080 None:intergenic 45.0%
AAACCTAGTCAATCCTTGGC+AGG + chr5_4:37897060-37897079 Msa0849920:CDS 45.0%
TTGGAAACTTCAACCTGCCA+AGG - chr5_4:37897076-37897095 None:intergenic 45.0%
TGTTGAGGTGAGATTGACAG+TGG - chr5_4:37897125-37897144 None:intergenic 45.0%
GATGAACTCTCAGCAAGTCT+AGG - chr5_4:37897154-37897173 None:intergenic 45.0%
! ATTTTGCCTTCGACAACGCG+TGG - chr5_4:37895506-37895525 None:intergenic 50.0%
!! AGCTTTGGAATCTTGACGCC+GGG - chr5_4:37895548-37895567 None:intergenic 50.0%
!! CAGCTTTGGAATCTTGACGC+CGG - chr5_4:37895549-37895568 None:intergenic 50.0%
! AGGAGACTGTCTGAGGTAGT+GGG - chr5_4:37895625-37895644 None:intergenic 50.0%
! AAGGAGACTGTCTGAGGTAG+TGG - chr5_4:37895626-37895645 None:intergenic 50.0%
CGCTGAGATGATGCAGAGAT+AGG - chr5_4:37895672-37895691 None:intergenic 50.0%
CTCAGCGGTTGATCTTCTTG+CGG + chr5_4:37895685-37895704 Msa0849920:CDS 50.0%
GCGAAAACTTCATCGGTGTG+AGG - chr5_4:37895713-37895732 None:intergenic 50.0%
TACCGGAGTGAGGATGAGTT+TGG - chr5_4:37895735-37895754 None:intergenic 50.0%
CGTCAATTGTTACCGGAGTG+AGG - chr5_4:37895745-37895764 None:intergenic 50.0%
ACTCCGGTAACAATTGACGG+TGG + chr5_4:37895746-37895765 Msa0849920:CDS 50.0%
AAAAGCTCCTGAGACGGCAT+TGG - chr5_4:37895926-37895945 None:intergenic 50.0%
!! CCAGACTTGGCCTTGAACAT+CGG - chr5_4:37895954-37895973 None:intergenic 50.0%
ATGTTCAAGGCCAAGTCTGG+AGG + chr5_4:37895954-37895973 Msa0849920:CDS 50.0%
CAGTCCAGCCAGTAGAGAAA+CGG - chr5_4:37896015-37896034 None:intergenic 50.0%
!!! CTACTGGCTGGACTGGTTTT+AGG + chr5_4:37896020-37896039 Msa0849920:CDS 50.0%
TCTGCGGGAGAGTTATCTGT+TGG + chr5_4:37896091-37896110 Msa0849920:CDS 50.0%
CACCCTCCTTCTTTATGTGC+CGG - chr5_4:37896123-37896142 None:intergenic 50.0%
GAGGGAGAAGTTAACCGAGT+CGG + chr5_4:37896159-37896178 Msa0849920:CDS 50.0%
!!! GGTTTTGGAAGCTGCGGAAT+TGG + chr5_4:37896183-37896202 Msa0849920:CDS 50.0%
TTTGGAAGCTGCGGAATTGG+CGG + chr5_4:37896186-37896205 Msa0849920:CDS 50.0%
AGCACAATGTCCGGACTAAC+TGG - chr5_4:37896806-37896825 None:intergenic 50.0%
CAACCTGCCAAGGATTGACT+AGG - chr5_4:37897066-37897085 None:intergenic 50.0%
! AGTCGAAGGTGCAGGTATGT+TGG - chr5_4:37897095-37897114 None:intergenic 50.0%
TGAGGTGAGATTGACAGTGG+AGG - chr5_4:37897122-37897141 None:intergenic 50.0%
CATTCAATTGCAGGGTCGAG+TGG + chr5_4:37897190-37897209 Msa0849920:CDS 50.0%
! ATTTTGCCTTCGACAACGCG+TGG - chr5_4:37895506-37895525 None:intergenic 50.0%
!! AGCTTTGGAATCTTGACGCC+GGG - chr5_4:37895548-37895567 None:intergenic 50.0%
!! CAGCTTTGGAATCTTGACGC+CGG - chr5_4:37895549-37895568 None:intergenic 50.0%
! AGGAGACTGTCTGAGGTAGT+GGG - chr5_4:37895625-37895644 None:intergenic 50.0%
! AAGGAGACTGTCTGAGGTAG+TGG - chr5_4:37895626-37895645 None:intergenic 50.0%
CGCTGAGATGATGCAGAGAT+AGG - chr5_4:37895672-37895691 None:intergenic 50.0%
CTCAGCGGTTGATCTTCTTG+CGG + chr5_4:37895685-37895704 Msa0849920:CDS 50.0%
GCGAAAACTTCATCGGTGTG+AGG - chr5_4:37895713-37895732 None:intergenic 50.0%
TACCGGAGTGAGGATGAGTT+TGG - chr5_4:37895735-37895754 None:intergenic 50.0%
CGTCAATTGTTACCGGAGTG+AGG - chr5_4:37895745-37895764 None:intergenic 50.0%
ACTCCGGTAACAATTGACGG+TGG + chr5_4:37895746-37895765 Msa0849920:CDS 50.0%
AAAAGCTCCTGAGACGGCAT+TGG - chr5_4:37895926-37895945 None:intergenic 50.0%
!! CCAGACTTGGCCTTGAACAT+CGG - chr5_4:37895954-37895973 None:intergenic 50.0%
ATGTTCAAGGCCAAGTCTGG+AGG + chr5_4:37895954-37895973 Msa0849920:CDS 50.0%
CAGTCCAGCCAGTAGAGAAA+CGG - chr5_4:37896015-37896034 None:intergenic 50.0%
!!! CTACTGGCTGGACTGGTTTT+AGG + chr5_4:37896020-37896039 Msa0849920:CDS 50.0%
TCTGCGGGAGAGTTATCTGT+TGG + chr5_4:37896091-37896110 Msa0849920:CDS 50.0%
CACCCTCCTTCTTTATGTGC+CGG - chr5_4:37896123-37896142 None:intergenic 50.0%
GAGGGAGAAGTTAACCGAGT+CGG + chr5_4:37896159-37896178 Msa0849920:CDS 50.0%
!!! GGTTTTGGAAGCTGCGGAAT+TGG + chr5_4:37896183-37896202 Msa0849920:CDS 50.0%
TTTGGAAGCTGCGGAATTGG+CGG + chr5_4:37896186-37896205 Msa0849920:CDS 50.0%
AGCACAATGTCCGGACTAAC+TGG - chr5_4:37896806-37896825 None:intergenic 50.0%
CAACCTGCCAAGGATTGACT+AGG - chr5_4:37897066-37897085 None:intergenic 50.0%
! AGTCGAAGGTGCAGGTATGT+TGG - chr5_4:37897095-37897114 None:intergenic 50.0%
TGAGGTGAGATTGACAGTGG+AGG - chr5_4:37897122-37897141 None:intergenic 50.0%
CATTCAATTGCAGGGTCGAG+TGG + chr5_4:37897190-37897209 Msa0849920:CDS 50.0%
!! GCTTTGGAATCTTGACGCCG+GGG - chr5_4:37895547-37895566 None:intergenic 55.0%
!! ACTGTCTGAGGTAGTGGGGA+AGG - chr5_4:37895620-37895639 None:intergenic 55.0%
! GGAGACTGTCTGAGGTAGTG+GGG - chr5_4:37895624-37895643 None:intergenic 55.0%
CGCCAAACTCATCCTCACTC+CGG + chr5_4:37895730-37895749 Msa0849920:CDS 55.0%
! GAGGAGCTGGTTCTTGGACT+TGG - chr5_4:37895775-37895794 None:intergenic 55.0%
TTGTACCTCGTGAATGCGCG+CGG + chr5_4:37895876-37895895 Msa0849920:CDS 55.0%
CCGATGTTCAAGGCCAAGTC+TGG + chr5_4:37895951-37895970 Msa0849920:CDS 55.0%
GACACCGTTTCTCTACTGGC+TGG + chr5_4:37896008-37896027 Msa0849920:CDS 55.0%
! CGTTTCTCTACTGGCTGGAC+TGG + chr5_4:37896013-37896032 Msa0849920:CDS 55.0%
ACGCCGGCACATAAAGAAGG+AGG + chr5_4:37896117-37896136 Msa0849920:CDS 55.0%
CGCCGGCACATAAAGAAGGA+GGG + chr5_4:37896118-37896137 Msa0849920:CDS 55.0%
AAGAAGGAGGGTGAAGAGGG+AGG + chr5_4:37896130-37896149 Msa0849920:CDS 55.0%
TGAAGAGGGAGGCTGGAAGA+GGG + chr5_4:37896141-37896160 Msa0849920:CDS 55.0%
GGAGAAGTTAACCGAGTCGG+CGG + chr5_4:37896162-37896181 Msa0849920:CDS 55.0%
! GTTAACCGAGTCGGCGGTTT+TGG + chr5_4:37896168-37896187 Msa0849920:CDS 55.0%
! AGCTTCCAAAACCGCCGACT+CGG - chr5_4:37896176-37896195 None:intergenic 55.0%
ACAGTGGAGGAGGAAGTCGA+AGG - chr5_4:37897109-37897128 None:intergenic 55.0%
GGTGAGATTGACAGTGGAGG+AGG - chr5_4:37897119-37897138 None:intergenic 55.0%
!! GCTTTGGAATCTTGACGCCG+GGG - chr5_4:37895547-37895566 None:intergenic 55.0%
!! ACTGTCTGAGGTAGTGGGGA+AGG - chr5_4:37895620-37895639 None:intergenic 55.0%
! GGAGACTGTCTGAGGTAGTG+GGG - chr5_4:37895624-37895643 None:intergenic 55.0%
CGCCAAACTCATCCTCACTC+CGG + chr5_4:37895730-37895749 Msa0849920:CDS 55.0%
! GAGGAGCTGGTTCTTGGACT+TGG - chr5_4:37895775-37895794 None:intergenic 55.0%
TTGTACCTCGTGAATGCGCG+CGG + chr5_4:37895876-37895895 Msa0849920:CDS 55.0%
CCGATGTTCAAGGCCAAGTC+TGG + chr5_4:37895951-37895970 Msa0849920:CDS 55.0%
GACACCGTTTCTCTACTGGC+TGG + chr5_4:37896008-37896027 Msa0849920:CDS 55.0%
! CGTTTCTCTACTGGCTGGAC+TGG + chr5_4:37896013-37896032 Msa0849920:CDS 55.0%
ACGCCGGCACATAAAGAAGG+AGG + chr5_4:37896117-37896136 Msa0849920:CDS 55.0%
CGCCGGCACATAAAGAAGGA+GGG + chr5_4:37896118-37896137 Msa0849920:CDS 55.0%
AAGAAGGAGGGTGAAGAGGG+AGG + chr5_4:37896130-37896149 Msa0849920:CDS 55.0%
TGAAGAGGGAGGCTGGAAGA+GGG + chr5_4:37896141-37896160 Msa0849920:CDS 55.0%
GGAGAAGTTAACCGAGTCGG+CGG + chr5_4:37896162-37896181 Msa0849920:CDS 55.0%
! GTTAACCGAGTCGGCGGTTT+TGG + chr5_4:37896168-37896187 Msa0849920:CDS 55.0%
! AGCTTCCAAAACCGCCGACT+CGG - chr5_4:37896176-37896195 None:intergenic 55.0%
ACAGTGGAGGAGGAAGTCGA+AGG - chr5_4:37897109-37897128 None:intergenic 55.0%
GGTGAGATTGACAGTGGAGG+AGG - chr5_4:37897119-37897138 None:intergenic 55.0%
! CCACAGGAGGAGCTGGTTCT+TGG - chr5_4:37895781-37895800 None:intergenic 60.0%
CCAAGAACCAGCTCCTCCTG+TGG + chr5_4:37895778-37895797 Msa0849920:CDS 60.0%
TCTTCGTCGGGAACCACAGG+AGG - chr5_4:37895794-37895813 None:intergenic 60.0%
CCATCTTCGTCGGGAACCAC+AGG - chr5_4:37895797-37895816 None:intergenic 60.0%
CCTGTGGTTCCCGACGAAGA+TGG + chr5_4:37895794-37895813 Msa0849920:CDS 60.0%
ATCAACCGCGCGCATTCACG+AGG - chr5_4:37895884-37895903 None:intergenic 60.0%
GTGAAGAGGGAGGCTGGAAG+AGG + chr5_4:37896140-37896159 Msa0849920:CDS 60.0%
!!! GTCGGCGGTTTTGGAAGCTG+CGG + chr5_4:37896177-37896196 Msa0849920:CDS 60.0%
! GAGGAGGAAGTCGAAGGTGC+AGG - chr5_4:37897103-37897122 None:intergenic 60.0%
! CCACAGGAGGAGCTGGTTCT+TGG - chr5_4:37895781-37895800 None:intergenic 60.0%
CCAAGAACCAGCTCCTCCTG+TGG + chr5_4:37895778-37895797 Msa0849920:CDS 60.0%
TCTTCGTCGGGAACCACAGG+AGG - chr5_4:37895794-37895813 None:intergenic 60.0%
CCATCTTCGTCGGGAACCAC+AGG - chr5_4:37895797-37895816 None:intergenic 60.0%
CCTGTGGTTCCCGACGAAGA+TGG + chr5_4:37895794-37895813 Msa0849920:CDS 60.0%
ATCAACCGCGCGCATTCACG+AGG - chr5_4:37895884-37895903 None:intergenic 60.0%
GTGAAGAGGGAGGCTGGAAG+AGG + chr5_4:37896140-37896159 Msa0849920:CDS 60.0%
!!! GTCGGCGGTTTTGGAAGCTG+CGG + chr5_4:37896177-37896196 Msa0849920:CDS 60.0%
! GAGGAGGAAGTCGAAGGTGC+AGG - chr5_4:37897103-37897122 None:intergenic 60.0%
TCGACAACGCGTGGCTGAGG+CGG - chr5_4:37895497-37895516 None:intergenic 65.0%
CCTTCGACAACGCGTGGCTG+AGG - chr5_4:37895500-37895519 None:intergenic 65.0%
CCTCAGCCACGCGTTGTCGA+AGG + chr5_4:37895497-37895516 Msa0849920:CDS 65.0%
TGGAATCTTGACGCCGGGGC+CGG - chr5_4:37895543-37895562 None:intergenic 65.0%
TCGGGAACCACAGGAGGAGC+TGG - chr5_4:37895788-37895807 None:intergenic 65.0%
AGGAGGGTGAAGAGGGAGGC+TGG + chr5_4:37896134-37896153 Msa0849920:CDS 65.0%
TCGACAACGCGTGGCTGAGG+CGG - chr5_4:37895497-37895516 None:intergenic 65.0%
CCTTCGACAACGCGTGGCTG+AGG - chr5_4:37895500-37895519 None:intergenic 65.0%
CCTCAGCCACGCGTTGTCGA+AGG + chr5_4:37895497-37895516 Msa0849920:CDS 65.0%
TGGAATCTTGACGCCGGGGC+CGG - chr5_4:37895543-37895562 None:intergenic 65.0%
TCGGGAACCACAGGAGGAGC+TGG - chr5_4:37895788-37895807 None:intergenic 65.0%
AGGAGGGTGAAGAGGGAGGC+TGG + chr5_4:37896134-37896153 Msa0849920:CDS 65.0%
! TGGCAGACATGCGCCGGCCC+CGG + chr5_4:37895527-37895546 Msa0849920:CDS 75.0%
! TGGCAGACATGCGCCGGCCC+CGG + chr5_4:37895527-37895546 Msa0849920:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 37895485 37897231 37895485 ID=Msa0849920;Name=Msa0849920
chr5_4 mRNA 37895485 37897231 37895485 ID=Msa0849920-mRNA-1;Parent=Msa0849920;Name=Msa0849920-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|379
chr5_4 exon 37895485 37896417 37895485 ID=Msa0849920-mRNA-1:exon:12275;Parent=Msa0849920-mRNA-1
chr5_4 exon 37897025 37897231 37897025 ID=Msa0849920-mRNA-1:exon:12276;Parent=Msa0849920-mRNA-1
chr5_4 CDS 37895485 37896417 37895485 ID=Msa0849920-mRNA-1:cds;Parent=Msa0849920-mRNA-1
chr5_4 CDS 37897025 37897231 37897025 ID=Msa0849920-mRNA-1:cds;Parent=Msa0849920-mRNA-1
Gene Sequence

>Msa0849920

ATGTCTCTGCCGCCTCAGCCACGCGTTGTCGAAGGCAAAATTTGGCAGACATGCGCCGGCCCCGGCGTCAAGATTCCAAAGCTGAACTCAGTCGTTTACTATTTTCCAAAAGGTCACTTGGAACATGCATGTCCTTCCCCACTACCTCAGACAGTCTCCTTTCTTCATGATCTTCATTCTTCATCCTATCTCTGCATCATCTCAGCGGTTGATCTTCTTGCGGATCCTCACACCGATGAAGTTTTCGCCAAACTCATCCTCACTCCGGTAACAATTGACGGTGGTGTCCAAGTCCAAGAACCAGCTCCTCCTGTGGTTCCCGACGAAGATGGAAACAATCTTGTTTCCTACGTCAAGACTCTTACACAATCTGATTCTAATAATATATTCTTTGTACCTCGTGAATGCGCGCGGTTGATCTTTCCAAATTTTAACAATCCAATGCCGTCTCAGGAGCTTTTTCTCACCGATGTTCAAGGCCAAGTCTGGAGGTTCAACTATACCTTTCGCAAGAATCCTGATAGACACCGTTTCTCTACTGGCTGGACTGGTTTTAGGGACGACAAGAAACTCGTCGCCGACGATTCCATTGTTTTCATGAAAAACTCTGCGGGAGAGTTATCTGTTGGAATACGCCGGCACATAAAGAAGGAGGGTGAAGAGGGAGGCTGGAAGAGGGAGAAGTTAACCGAGTCGGCGGTTTTGGAAGCTGCGGAATTGGCGGAAGCGAACAAAGCGTTTGAAGTTGTGTATTATCCAAGTCATAATTGGTCTGATTTTGTGGTGGATGCTAAGACTGTTGATGACGCTATGAAGATTGTTTGGAATTCTGGGATGAGAGTGAAGCTTCTTTTGAAGAATGATCAGTCCCTGGGAACAATCTCCAATGTGTCTAATCCTTCTTCGAATTCCCCTAATTGGAACATTCTTCAGGTTAACTGGGATGGACCTAATATCCCGCAGAATCCAAACCTAGTCAATCCTTGGCAGGTTGAAGTTTCCAACATACCTGCACCTTCGACTTCCTCCTCCACTGTCAATCTCACCTCAACAAAAGCTCCTAGACTTGCTGAGAGTTCATCCCCCCAACAAATTCTACATTCAATTGCAGGGTCGAGTGGTACTTTGCCTGACGCGTAG
Protein sequence

>Msa0849920

MSLPPQPRVVEGKIWQTCAGPGVKIPKLNSVVYYFPKGHLEHACPSPLPQTVSFLHDLHSSSYLCIISAVDLLADPHTDEVFAKLILTPVTIDGGVQVQEPAPPVVPDEDGNNLVSYVKTLTQSDSNNIFFVPRECARLIFPNFNNPMPSQELFLTDVQGQVWRFNYTFRKNPDRHRFSTGWTGFRDDKKLVADDSIVFMKNSAGELSVGIRRHIKKEGEEGGWKREKLTESAVLEAAELAEANKAFEVVYYPSHNWSDFVVDAKTVDDAMKIVWNSGMRVKLLLKNDQSLGTISNVSNPSSNSPNWNILQVNWDGPNIPQNPNLVNPWQVEVSNIPAPSTSSSTVNLTSTKAPRLAESSSPQQILHSIAGSSGTLPDA*