AlfalfaGEDB | Msa0850800

M. sativa cultivar zhongmu-4 / Msa0850800

KEGG: K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0850800	XP_003615216.2	90.261	842	60	6	1	825	1	837	0.0	1492

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0850800	sp\|Q9SSE9\|JMJ25_ARATH	56.237	489	201	3	341	824	415	895	9.67e-179	544
Msa0850800	sp\|Q9SSE9\|JMJ25_ARATH	36.491	285	176	4	41	323	67	348	2.35e-47	186

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0850800	G7KBD9	90.261	842	60	6	1	825	1	837	0.0	1492

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TFs/TRs:

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Gene ID	Type	Classification
Msa0850800	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0850800	MtrunA17_Chr5g0426961	90.261	842	60	6	1	825	1	837	1492
Msa0850800	MtrunA17_Chr1g0211711	70.823	802	204	8	43	824	261	1052	1158
Msa0850800	MtrunA17_Chr1g0183311	63.176	888	256	10	3	824	1	883	1073
Msa0850800	MtrunA17_Chr1g0211661	69.432	651	192	2	119	763	216	865	937
Msa0850800	MtrunA17_Chr1g0211691	70.732	615	154	7	120	711	334	945	873
Msa0850800	MtrunA17_Chr5g0420361	63.748	651	193	8	199	813	145	788	829
Msa0850800	MtrunA17_Chr6g0472441	60.245	654	191	11	199	813	87	710	757
Msa0850800	MtrunA17_Chr2g0289121	45.185	810	379	16	33	820	53	819	621
Msa0850800	MtrunA17_Chr5g0448301	60.456	526	181	5	215	733	126	631	617
Msa0850800	MtrunA17_Chr4g0075261	45.174	746	321	13	121	820	161	864	617

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0850800	AT1G11950.1	49.000	700	334	7	124	820	189	868	0.0	675
Msa0850800	AT1G11950.3	49.000	700	334	7	124	820	189	868	0.0	675
Msa0850800	AT1G62310.1	48.551	690	324	11	127	804	208	878	0.0	647
Msa0850800	AT1G11950.2	46.761	633	314	7	124	753	189	801	0.0	572
Msa0850800	AT3G07610.1	56.237	489	201	3	341	824	415	895	9.83e-180	544
Msa0850800	AT3G07610.1	36.491	285	176	4	41	323	67	348	2.39e-48	186
Msa0850800	AT3G07610.3	53.937	508	205	4	341	824	415	917	7.22e-172	524
Msa0850800	AT3G07610.3	36.491	285	176	4	41	323	67	348	1.42e-48	186
Msa0850800	AT4G00990.3	42.727	550	279	13	128	666	80	604	3.29e-133	416
Msa0850800	AT4G00990.3	60.177	113	40	2	657	769	671	778	1.12e-34	142

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Find 189 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGACTCCTCACAATA+AGG	0.433520	5_4:+40605622	Msa0850800:CDS
AAAAGGTCTGATCATGGATG+GGG	0.603357	5_4:-40610372	None:intergenic
AAAATAGTTTGTTGGTTGGT+GGG	0.432080	5_4:+40609032	Msa0850800:CDS
AAACGCGGGAGCGGTGGCGG+AGG	0.477252	5_4:+40605388	Msa0850800:CDS
AAAGAGACTCAGAACAAACG+CGG	0.708789	5_4:+40605373	Msa0850800:CDS
AAATAGTTTGTTGGTTGGTG+GGG	0.532716	5_4:+40609033	Msa0850800:CDS
AAATGAAAGTGTAAAGAAAT+GGG	0.502485	5_4:-40605172	None:intergenic
AACAAACGCGGGAGCGGTGG+CGG	0.439355	5_4:+40605385	Msa0850800:CDS
AACAACAACACATTCACGAC+GGG	0.521041	5_4:+40605314	Msa0850800:CDS
AACAATAAATGCTCCCGTCT+TGG	0.461569	5_4:+40605508	Msa0850800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTAGTCACTCATCAGATT+AGG	-	chr5_4:40605934-40605953	None:intergenic	30.0%
TCAATGTCAAAGAAATGACA+AGG	+	chr5_4:40606000-40606019	Msa0850800:CDS	30.0%
CAATGTCAAAGAAATGACAA+GGG	+	chr5_4:40606001-40606020	Msa0850800:CDS	30.0%
ACAGTCAATTAAAGAAAAGG+AGG	+	chr5_4:40606353-40606372	Msa0850800:intron	30.0%
TCTTCCACATTTAATACGAT+TGG	+	chr5_4:40606431-40606450	Msa0850800:CDS	30.0%
TGATCCAATCGTATTAAATG+TGG	-	chr5_4:40606438-40606457	None:intergenic	30.0%
GGAAAAAATACCTTGTAACT+TGG	-	chr5_4:40606490-40606509	None:intergenic	30.0%
AAGTTATCGAAGAGAAAGAA+AGG	-	chr5_4:40606585-40606604	None:intergenic	30.0%
AGTCATTAACAATGTAGCAT+TGG	-	chr5_4:40606883-40606902	None:intergenic	30.0%
CTTTGCTTTACATACTAACT+CGG	-	chr5_4:40607270-40607289	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	40605156	40612387	40605156	ID=Msa0850800;Name=Msa0850800
chr5_4	mRNA	40605156	40612387	40605156	ID=Msa0850800-mRNA-1;Parent=Msa0850800;Name=Msa0850800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=131\|0.09\|0.08\|1\|1\|1\|12\|0\|825
chr5_4	exon	40605156	40605643	40605156	ID=Msa0850800-mRNA-1:exon:12778;Parent=Msa0850800-mRNA-1
chr5_4	exon	40605971	40606086	40605971	ID=Msa0850800-mRNA-1:exon:12779;Parent=Msa0850800-mRNA-1
chr5_4	exon	40606164	40606263	40606164	ID=Msa0850800-mRNA-1:exon:12780;Parent=Msa0850800-mRNA-1
chr5_4	exon	40606357	40606498	40606357	ID=Msa0850800-mRNA-1:exon:12781;Parent=Msa0850800-mRNA-1
chr5_4	exon	40606771	40606834	40606771	ID=Msa0850800-mRNA-1:exon:12782;Parent=Msa0850800-mRNA-1
chr5_4	exon	40606917	40607655	40606917	ID=Msa0850800-mRNA-1:exon:12783;Parent=Msa0850800-mRNA-1
chr5_4	exon	40607897	40608226	40607897	ID=Msa0850800-mRNA-1:exon:12784;Parent=Msa0850800-mRNA-1
chr5_4	exon	40608893	40609174	40608893	ID=Msa0850800-mRNA-1:exon:12785;Parent=Msa0850800-mRNA-1
chr5_4	exon	40610364	40610436	40610364	ID=Msa0850800-mRNA-1:exon:12786;Parent=Msa0850800-mRNA-1
chr5_4	exon	40610538	40610623	40610538	ID=Msa0850800-mRNA-1:exon:12787;Parent=Msa0850800-mRNA-1
chr5_4	exon	40611796	40611915	40611796	ID=Msa0850800-mRNA-1:exon:12788;Parent=Msa0850800-mRNA-1
chr5_4	exon	40612319	40612387	40612319	ID=Msa0850800-mRNA-1:exon:12789;Parent=Msa0850800-mRNA-1
chr5_4	five_prime_UTR	40605156	40605286	40605156	ID=Msa0850800-mRNA-1:five_prime_utr;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40605287	40605643	40605287	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40605971	40606086	40605971	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40606164	40606263	40606164	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40606357	40606498	40606357	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40606771	40606834	40606771	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40606917	40607655	40606917	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40607897	40608226	40607897	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40608893	40609174	40608893	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40610364	40610436	40610364	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40610538	40610623	40610538	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40611796	40611915	40611796	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4	CDS	40612319	40612387	40612319	ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1

Gene Sequence

>Msa0850800

ATGGCGTTTGCGAGGGAACAAGAAGACAACAACAACACATTCACGACGGGGATTAACAAGCCTCCTATCCATTATGTCTATTCTAGAAAGAGACTCAGAACAAACGCGGGAGCGGTGGCGGAGGAGTTAGCTAAGAACGAAGAACAACAACAACAACAAACCACCGATGAAGCTGCTTCTTCTTCCGTTGCTGTTCGAAAGAGTCAACGGATAAGAAGAACAACAATAAATGCTCCCGTCTTGGTAGACAAGAAGAAAAAGAAGAAGAAGAATCTTGGTGATGGTGATGGTGCTGAGAAAACCAACACAATTTCTCCGAAGAAACCCGGAAAAAGAAAACAGACTCCTCACAATAAGTGGATTGAAGAGGAGTCCTTAATGTGTCATCAATGTCAAAGAAATGACAAGGGCAGGGTTGTCAGATGCACCAAATGCAAACGGAAAAGATATTGTGTAGACTGTATAAAAAATTGGTATCCTCGATTGAAAGAGGAACAATTTGCTGAGGCATGTCCTGTCTGCTGTGGCAACTGCAATTGCAAAGCTTGTTTGAAGTCACGGAAACTTATCGATTCAATTAAAGAAAAGGAGGAGGAAACCAACGATCATCATCAGGTTGAGCGCTCCAAGTATATGCTCAAAGCTCTTCTTCCACATTTAATACGATTGGATCAAGAACAAATGGCCGAGAAGGAAATAGAAGCCAAGTTACAAGGTCTCTCACTCTCTGAGCTAAAAATTAAAAAATCAAATCCCCATAATGATGAGCGCATGTACTGTGACAACTGCAAAACATCAATATTTGACTACCATAGAAGCTGCACAGAATGCTCTTTTGACCTTTGTCTCCTCTGTTGCCGTGAGCTTCGTTGTGGGCAGCTTCTAGGTGGGGCAGATCCATTTGATTTTGAGTTTATCTTCCGAGGCCCAAATTATCTGCATGGTGAAGTTGCGAAGAAAGTAACCAGATACAAAGCACCTGATGCTGGTGCCCAGCCTGAGATTCCTACGTGGTCAAAATCTGGGTGGCATGCTGATAGTGACGGCAATATTCCCTGTCCAAAACCTGAGATTAAATGTGATCACGGTTACCTTGAACTGAAAAGCGTATTTTCGCCAGAATGCATCTCCGAGTTAGTATGTAAAGCAAAGGAACTTGCAGATTCAATGAAACTTCAAGATGCAGAGGTGACTCTTGATAATAGCTGCTCTTGTTTGAATCCTGTTAGGAATAGAGATGATATACACAATAACACAAGGGAAGCAGCTCTTTGCAAAGAATCCAGGGGCAACTTTTTGTACTGTCCTAGGGCTGTAGATCTTCATCACGATGATGTAGGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAGCCGTTTGTCATGTGGCGTGCATTTCGTCAAATAAACAAGAACAAGAACAAGTCACTTTTGGATGTTAAGGCACTTGATTGCTTAGATTGGTGCGAGATAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATTGTCCCAAGGATAATCATAATTGGCCTCAAGTATTGAAATTGAAAGATTGGCCTCCTTCTAAACTATTTGAAGAAAGTTTACCGCGTCATTGTGCGGAGTTCATATCTTCCTTGCCATTTAAAGAATATACAAATCCTTTCAAAGGTGCTCTCAACCTTGCTGTGAAGCTGCCTGATGAAGTTCTAAAGCCAGACATGGGACCAAAAACATATATTGCGTATGGATTTGCTGAGGAGCTTGGACGGGGTGATTCGGTGACTAGGCTCCATTGTGATATGTCTGACGCAGTAAATGTGTTGACTCATATTGCTGAAGCAAAACTGGATAGTGGGAGTATTGACGCAATTAAGAAATTGAAACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATATTCAGGATGGAGAGACCACTGTTGAAAATAGTTTGTTGGTTGGTGGGGATTCCTTAGATGGTGCTCTTTGGGATATTTTTCGGAGAGAGGACGTACCTGCATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTCTCCTGTAGAGGAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTAACCATCGGGCATAAGAAAAAGCTGAAGGAAGAGTATGGTATTGAGCCTTGGACTTTTGTTCAGAAGCTTGGAGATGCAATTTTCATTCCAGCTGGTTGCCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAGGTCCATAGAGGACAAATTGGAGGTGAAGAAAATGATCGTATATGCTATGATTGATGTGGTCAAAAAGTTGGAGAAAGCAAGGAGCCAATGA

Protein sequence

>Msa0850800

MAFAREQEDNNNTFTTGINKPPIHYVYSRKRLRTNAGAVAEELAKNEEQQQQQTTDEAASSSVAVRKSQRIRRTTINAPVLVDKKKKKKKNLGDGDGAEKTNTISPKKPGKRKQTPHNKWIEEESLMCHQCQRNDKGRVVRCTKCKRKRYCVDCIKNWYPRLKEEQFAEACPVCCGNCNCKACLKSRKLIDSIKEKEEETNDHHQVERSKYMLKALLPHLIRLDQEQMAEKEIEAKLQGLSLSELKIKKSNPHNDERMYCDNCKTSIFDYHRSCTECSFDLCLLCCRELRCGQLLGGADPFDFEFIFRGPNYLHGEVAKKVTRYKAPDAGAQPEIPTWSKSGWHADSDGNIPCPKPEIKCDHGYLELKSVFSPECISELVCKAKELADSMKLQDAEVTLDNSCSCLNPVRNRDDIHNNTREAALCKESRGNFLYCPRAVDLHHDDVGHFQWHWSKGEPVIVSNVLECTSGLSWEPFVMWRAFRQINKNKNKSLLDVKALDCLDWCEIDINVHQFFTGYTNCPKDNHNWPQVLKLKDWPPSKLFEESLPRHCAEFISSLPFKEYTNPFKGALNLAVKLPDEVLKPDMGPKTYIAYGFAEELGRGDSVTRLHCDMSDAVNVLTHIAEAKLDSGSIDAIKKLKQKHLEQDKRELHGDIQDGETTVENSLLVGGDSLDGALWDIFRREDVPALQEYLKKHFREFRHVHCSPVEEVIHPIHDQTFYLTIGHKKKLKEEYGIEPWTFVQKLGDAIFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSIEDKLEVKKMIVYAMIDVVKKLEKARSQ*