AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0850800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850800 MtrunA17_Chr5g0426961 90.261 842 60 6 1 825 1 837 0.0 1492
Msa0850800 MtrunA17_Chr1g0211711 70.823 802 204 8 43 824 261 1052 0.0 1158
Msa0850800 MtrunA17_Chr1g0183311 63.176 888 256 10 3 824 1 883 0.0 1073
Msa0850800 MtrunA17_Chr1g0211661 69.432 651 192 2 119 763 216 865 0.0 937
Msa0850800 MtrunA17_Chr1g0211691 70.732 615 154 7 120 711 334 945 0.0 873
Msa0850800 MtrunA17_Chr5g0420361 63.748 651 193 8 199 813 145 788 0.0 829
Msa0850800 MtrunA17_Chr6g0472441 60.245 654 191 11 199 813 87 710 0.0 757
Msa0850800 MtrunA17_Chr2g0289121 45.185 810 379 16 33 820 53 819 0.0 621
Msa0850800 MtrunA17_Chr5g0448301 60.456 526 181 5 215 733 126 631 0.0 617
Msa0850800 MtrunA17_Chr4g0075261 45.174 746 321 13 121 820 161 864 0.0 617
Msa0850800 MtrunA17_Chr7g0275771 40.621 805 356 17 124 821 136 925 0.0 556
Msa0850800 MtrunA17_Chr1g0192011 36.437 741 378 13 128 821 267 961 6.10e-151 468
Msa0850800 MtrunA17_Chr2g0289031 57.990 388 159 2 435 820 8 393 3.78e-149 443
Msa0850800 MtrunA17_Chr1g0147021 44.712 539 255 12 122 653 864 1366 2.11e-129 424
Msa0850800 MtrunA17_Chr1g0147021 73.529 136 36 0 676 811 1551 1686 5.21e-58 216
Msa0850800 MtrunA17_Chr2g0281051 33.333 525 326 10 128 643 207 716 1.15e-80 279
Msa0850800 MtrunA17_Chr2g0281051 49.664 149 75 0 676 824 810 958 2.87e-40 160
Msa0850800 MtrunA17_Chr8g0364421 45.349 258 110 3 237 494 3 229 5.26e-64 214
Msa0850800 MtrunA17_Chr1g0211701 83.478 115 19 0 709 823 4 118 3.04e-63 209
Msa0850800 MtrunA17_Chr7g0231061 62.424 165 62 0 496 660 12 176 3.56e-61 205
Msa0850800 MtrunA17_Chr4g0048531 38.721 297 171 5 351 643 727 1016 5.56e-59 218
Msa0850800 MtrunA17_Chr4g0048531 52.703 148 66 2 675 819 1132 1278 1.17e-42 168
Msa0850800 MtrunA17_Chr4g0048531 38.323 167 97 3 128 289 260 425 6.53e-29 124
Msa0850800 MtrunA17_Chr8g0361381 51.872 187 86 1 431 617 26 208 3.72e-58 197
Msa0850800 MtrunA17_Chr2g0289091 61.905 147 46 3 649 785 274 420 3.11e-50 182
Msa0850800 MtrunA17_Chr2g0289091 55.862 145 63 1 506 650 20 163 6.05e-45 167
Msa0850800 MtrunA17_Chr2g0289041 40.191 209 116 4 150 358 2 201 4.47e-44 158
Msa0850800 MtrunA17_Chr8g0361391 73.034 89 23 1 675 763 50 137 3.01e-40 145
Msa0850800 MtrunA17_Chr8g0340381 65.414 133 27 3 530 662 36 149 4.90e-39 143
Msa0850800 MtrunA17_Chr8g0364411 53.982 113 51 1 128 240 33 144 1.57e-32 123
Msa0850800 MtrunA17_Chr1g0211671 77.419 62 14 0 762 823 15 76 2.88e-27 107
Msa0850800 MtrunA17_Chr3g0119761 63.333 60 22 0 603 662 55 114 1.41e-14 71.2
Msa0850800 MtrunA17_Chr2g0289101 32.558 129 81 3 261 388 8 131 9.71e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850800 AT1G11950.1 49.000 700 334 7 124 820 189 868 0.0 675
Msa0850800 AT1G11950.3 49.000 700 334 7 124 820 189 868 0.0 675
Msa0850800 AT1G62310.1 48.551 690 324 11 127 804 208 878 0.0 647
Msa0850800 AT1G11950.2 46.761 633 314 7 124 753 189 801 0.0 572
Msa0850800 AT3G07610.1 56.237 489 201 3 341 824 415 895 9.83e-180 544
Msa0850800 AT3G07610.1 36.491 285 176 4 41 323 67 348 2.39e-48 186
Msa0850800 AT3G07610.3 53.937 508 205 4 341 824 415 917 7.22e-172 524
Msa0850800 AT3G07610.3 36.491 285 176 4 41 323 67 348 1.42e-48 186
Msa0850800 AT4G00990.3 42.727 550 279 13 128 666 80 604 3.29e-133 416
Msa0850800 AT4G00990.3 60.177 113 40 2 657 769 671 778 1.12e-34 142
Msa0850800 AT4G00990.2 42.727 550 279 13 128 666 80 604 4.90e-133 415
Msa0850800 AT4G00990.2 63.810 105 33 2 657 761 671 770 6.99e-34 140
Msa0850800 AT4G00990.1 42.727 550 279 13 128 666 80 604 1.25e-132 416
Msa0850800 AT4G00990.1 61.350 163 58 2 657 819 671 828 1.76e-56 209
Msa0850800 AT1G09060.2 32.842 746 405 16 121 821 197 891 1.79e-121 389
Msa0850800 AT1G09060.1 32.842 746 405 16 121 821 197 891 1.79e-121 389
Msa0850800 AT1G09060.4 32.842 746 405 16 121 821 211 905 3.08e-121 389
Msa0850800 AT1G09060.3 32.842 746 405 16 121 821 211 905 3.08e-121 389
Msa0850800 AT4G21430.1 29.610 770 449 13 100 824 195 916 4.17e-102 337
Msa0850800 AT3G07610.2 54.770 283 121 2 341 623 415 690 5.48e-89 298
Msa0850800 AT3G07610.2 36.491 285 176 4 41 323 67 348 3.34e-49 186

Find 189 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCACCATGCAGATAATT+TGG 0.149377 5_4:-40607065 None:intergenic
GGATTTGTATATTCTTTAAA+TGG 0.213495 5_4:-40608053 None:intergenic
AGTACATGCGCTCATCATTA+TGG 0.215750 5_4:-40606811 None:intergenic
CTTCGTTGTGGGCAGCTTCT+AGG 0.236807 5_4:+40607002 Msa0850800:CDS
ATTCCTTAGATGGTGCTCTT+TGG 0.245043 5_4:+40609056 Msa0850800:CDS
TTCCTTAGATGGTGCTCTTT+GGG 0.262549 5_4:+40609057 Msa0850800:CDS
AATGTGCACCAATTCTTTAC+TGG 0.265399 5_4:+40607906 Msa0850800:CDS
TTGACATTGATGACACATTA+AGG 0.270314 5_4:-40605987 None:intergenic
AGTACATTGCTGACAATTAC+AGG 0.278275 5_4:-40607509 None:intergenic
GAACAAGAACAAGTCACTTT+TGG 0.279118 5_4:+40607598 Msa0850800:CDS
CTTGGCTTCTATTTCCTTCT+CGG 0.286746 5_4:-40606469 None:intergenic
AGCATCAGGTGCTTTGTATC+TGG 0.288535 5_4:-40607102 None:intergenic
GTTGGTGGGGATTCCTTAGA+TGG 0.294738 5_4:+40609046 Msa0850800:CDS
GTCCCAAGGATAATCATAAT+TGG 0.295008 5_4:+40607940 Msa0850800:CDS
TCACATTTAATCTCAGGTTT+TGG 0.298428 5_4:-40607197 None:intergenic
CTTTCTTCAAATAGTTTAGA+AGG 0.302686 5_4:-40607993 None:intergenic
TACCTCCAATTTGTCCTCTA+TGG 0.305460 5_4:-40611896 None:intergenic
TCATATTGCTGAAGCAAAAC+TGG 0.320106 5_4:+40608907 Msa0850800:CDS
TCTATGGACCTGTGATTTAC+TGG 0.329135 5_4:-40611880 None:intergenic
ATTCCTACGTGGTCAAAATC+TGG 0.333625 5_4:+40607140 Msa0850800:CDS
AGCATTCTGTGCAGCTTCTA+TGG 0.339021 5_4:-40606947 None:intergenic
GGAGCTACATGGTGATATTC+AGG 0.343116 5_4:+40608991 Msa0850800:CDS
ATGCCCGATGGTTAGATAAA+AGG 0.344516 5_4:-40610389 None:intergenic
ATCCCAAAGAGCACCATCTA+AGG 0.353655 5_4:-40609059 None:intergenic
GCTCTTGTTTGAATCCTGTT+AGG 0.355578 5_4:+40607345 Msa0850800:CDS
ACTAACTCGGAGATGCATTC+TGG 0.375260 5_4:-40607254 None:intergenic
AGAAGCATTTCAGAGAGTTC+AGG 0.389778 5_4:+40609125 Msa0850800:CDS
GTACATGCGCTCATCATTAT+GGG 0.392626 5_4:-40606810 None:intergenic
ATATCATCTCTATTCCTAAC+AGG 0.396727 5_4:-40607359 None:intergenic
AAGTATTGAAATTGAAAGAT+TGG 0.403818 5_4:+40607967 Msa0850800:CDS
AGAGGACGTACCTGCATTGC+AGG 0.406514 5_4:+40609093 Msa0850800:CDS
AGGCCAATTATGATTATCCT+TGG 0.408256 5_4:-40607943 None:intergenic
CAGCTCTTTGCAAAGAATCC+AGG 0.410316 5_4:+40607402 Msa0850800:CDS
TCTTCCACATTTAATACGAT+TGG 0.410475 5_4:+40606431 Msa0850800:CDS
CTTCACCATGCAGATAATTT+GGG 0.410728 5_4:-40607064 None:intergenic
TCTTTCTAGAATAGACATAA+TGG 0.411099 5_4:-40605355 None:intergenic
TTCAATGGCACTGGAGCAAA+GGG 0.413215 5_4:+40607483 Msa0850800:CDS
TCAGGCTGGGCACCAGCATC+AGG 0.415198 5_4:-40607116 None:intergenic
TTGTGTACCCAGTAAAGAAT+TGG 0.417175 5_4:-40607914 None:intergenic
GAAATGAAAGTGTAAAGAAA+TGG 0.420297 5_4:-40605173 None:intergenic
AATGTACTTGAATGTACATC+TGG 0.421952 5_4:+40607524 Msa0850800:CDS
TTACCTTCAGATTTCGGACT+TGG 0.425214 5_4:-40610605 None:intergenic
CCGTGATCACATTTAATCTC+AGG 0.429409 5_4:-40607203 None:intergenic
AAAATAGTTTGTTGGTTGGT+GGG 0.432080 5_4:+40609032 Msa0850800:CDS
AAAACAGACTCCTCACAATA+AGG 0.433520 5_4:+40605622 Msa0850800:CDS
TTTGACCACGTAGGAATCTC+AGG 0.438455 5_4:-40607134 None:intergenic
AACAAACGCGGGAGCGGTGG+CGG 0.439355 5_4:+40605385 Msa0850800:CDS
AGGCACTTGATTGCTTAGAT+TGG 0.440544 5_4:+40607627 Msa0850800:CDS
TTCAGATATTCCTGCAATGC+AGG 0.441628 5_4:-40609103 None:intergenic
AAGAGCTTTGAGCATATACT+TGG 0.441941 5_4:-40606409 None:intergenic
AAGATAAACTCAAAATCAAA+TGG 0.449448 5_4:-40607035 None:intergenic
AATGTACATCTGGTTTAAGC+TGG 0.451500 5_4:+40607534 Msa0850800:CDS
GGAGCTTGGACGGGGTGATT+CGG 0.453767 5_4:+40608172 Msa0850800:CDS
GACAAAATCAAGTGCAACCT+TGG 0.456526 5_4:-40611803 None:intergenic
ATTTGCTGAGGAGCTTGGAC+GGG 0.458809 5_4:+40608163 Msa0850800:CDS
TCTGGCTTTAGAACTTCATC+AGG 0.461474 5_4:-40608110 None:intergenic
AACAATAAATGCTCCCGTCT+TGG 0.461569 5_4:+40605508 Msa0850800:CDS
TTCTTCTTGTCTACCAAGAC+GGG 0.465663 5_4:-40605521 None:intergenic
CAGGTCCATAGAGGACAAAT+TGG 0.466017 5_4:+40611891 Msa0850800:CDS
TTCAGATTTCGGACTTGGTG+GGG 0.467992 5_4:-40610600 None:intergenic
GGCCAATTATGATTATCCTT+GGG 0.468355 5_4:-40607942 None:intergenic
GCTGAAGCAAAACTGGATAG+TGG 0.471171 5_4:+40608914 Msa0850800:CDS
GCAAAGCTTGTTTGAAGTCA+CGG 0.474647 5_4:+40606229 Msa0850800:CDS
CCTTCAGATTTCGGACTTGG+TGG 0.476898 5_4:-40610602 None:intergenic
AAACGCGGGAGCGGTGGCGG+AGG 0.477252 5_4:+40605388 Msa0850800:CDS
CATGCAGATAATTTGGGCCT+CGG 0.479508 5_4:-40607058 None:intergenic
GTCAAAGAAATGACAAGGGC+AGG 0.480713 5_4:+40606005 Msa0850800:CDS
ACGATTGGATCAAGAACAAA+TGG 0.480998 5_4:+40606446 Msa0850800:CDS
ACTACAGTCAATTAAAGAAA+AGG 0.482579 5_4:+40606350 Msa0850800:intron
TGCGGAATTCCTCTGTCAAA+CGG 0.487229 5_4:-40611852 None:intergenic
GTTGCCGTGAGCTTCGTTGT+GGG 0.489346 5_4:+40606991 Msa0850800:CDS
ACTAACTTTACCTCCTCTAC+AGG 0.489467 5_4:-40609163 None:intergenic
TGTGATTTACTGGAAGTTTG+CGG 0.491065 5_4:-40611870 None:intergenic
ATGTGCACCAATTCTTTACT+GGG 0.492244 5_4:+40607907 Msa0850800:CDS
TATGGATTTGCTGAGGAGCT+TGG 0.493292 5_4:+40608158 Msa0850800:CDS
CTTCAGATTTCGGACTTGGT+GGG 0.495361 5_4:-40610601 None:intergenic
CACTGTTGAAAATAGTTTGT+TGG 0.496892 5_4:+40609024 Msa0850800:CDS
AAATGAAAGTGTAAAGAAAT+GGG 0.502485 5_4:-40605172 None:intergenic
TTTCTTCTTGTCTACCAAGA+CGG 0.504344 5_4:-40605522 None:intergenic
GTTGTGGGCAGCTTCTAGGT+GGG 0.507656 5_4:+40607006 Msa0850800:CDS
GATTTGCTGAGGAGCTTGGA+CGG 0.507712 5_4:+40608162 Msa0850800:CDS
GGAAACCAACGATCATCATC+AGG 0.509624 5_4:+40606377 Msa0850800:CDS
TGTATGTAGGTATTGAGCCT+TGG 0.510562 5_4:+40610529 Msa0850800:intron
TGTATATTCTTTAAATGGCA+AGG 0.512473 5_4:-40608048 None:intergenic
CGTTGTGGGCAGCTTCTAGG+TGG 0.513332 5_4:+40607005 Msa0850800:CDS
CTTTGCTTTACATACTAACT+CGG 0.513784 5_4:-40607267 None:intergenic
TTTCAATGGCACTGGAGCAA+AGG 0.515097 5_4:+40607482 Msa0850800:CDS
GCTCCCTCTTGTCTTGCTCA+AGG 0.519343 5_4:-40608973 None:intergenic
GAAAATAGTTTGTTGGTTGG+TGG 0.519502 5_4:+40609031 Msa0850800:CDS
AACAACAACACATTCACGAC+GGG 0.521041 5_4:+40605314 Msa0850800:CDS
TGTTGCCGTGAGCTTCGTTG+TGG 0.522924 5_4:+40606990 Msa0850800:CDS
ACCACGTAGGAATCTCAGGC+TGG 0.525097 5_4:-40607130 None:intergenic
TCTTTCAATTTCAATACTTG+AGG 0.529125 5_4:-40607963 None:intergenic
AAATAGTTTGTTGGTTGGTG+GGG 0.532716 5_4:+40609033 Msa0850800:CDS
TTCCTACGTGGTCAAAATCT+GGG 0.534093 5_4:+40607141 Msa0850800:CDS
TTTGTCTCTCCTGAAAATGT+TGG 0.534278 5_4:+40611820 Msa0850800:CDS
TCAGATTTCGGACTTGGTGG+GGG 0.534353 5_4:-40610599 None:intergenic
TGATCCAATCGTATTAAATG+TGG 0.539950 5_4:-40606435 None:intergenic
AATGCACGCCACATGACAAA+CGG 0.544435 5_4:-40607560 None:intergenic
GTCAATTAAAGAAAAGGAGG+AGG 0.545970 5_4:+40606356 Msa0850800:intron
TTTGCTGAGGAGCTTGGACG+GGG 0.546841 5_4:+40608164 Msa0850800:CDS
GGAAGAAGAAGCAGCTTCAT+CGG 0.547422 5_4:-40605450 None:intergenic
ATAATGATGAGCGCATGTAC+TGG 0.548032 5_4:+40606813 Msa0850800:CDS
TCAAGAACAAATGGCCGAGA+AGG 0.548541 5_4:+40606455 Msa0850800:CDS
AGCTCTTTGCAAAGAATCCA+GGG 0.549815 5_4:+40607403 Msa0850800:CDS
TGTCCATTGCTCTCCTGTAG+AGG 0.552261 5_4:+40609150 Msa0850800:CDS
TTAGATAAAAGGTCTGATCA+TGG 0.552811 5_4:-40610378 None:intergenic
TCAGATGCACCAAATGCAAA+CGG 0.554343 5_4:+40606032 Msa0850800:CDS
TAAAAGGTCTGATCATGGAT+GGG 0.555220 5_4:-40610373 None:intergenic
CTGAAGCAAAACTGGATAGT+GGG 0.556295 5_4:+40608915 Msa0850800:CDS
ATAAAAGGTCTGATCATGGA+TGG 0.557609 5_4:-40610374 None:intergenic
CTCAACCTGATGATGATCGT+TGG 0.558986 5_4:-40606382 None:intergenic
AGGTTGAGAGCACCTTTGAA+AGG 0.563537 5_4:-40608074 None:intergenic
ACTCAGAACAAACGCGGGAG+CGG 0.564215 5_4:+40605379 Msa0850800:CDS
GATCTTCATCACGATGATGT+AGG 0.564793 5_4:+40607455 Msa0850800:CDS
AAGGTATCCTCGATTGAAAG+AGG 0.564928 5_4:+40606161 Msa0850800:intron
AAGAAGAAGAATCTTGGTGA+TGG 0.565270 5_4:+40605548 Msa0850800:CDS
GTTGAAAATAGTTTGTTGGT+TGG 0.566984 5_4:+40609028 Msa0850800:CDS
GCTGGGAGCCGTTTGTCATG+TGG 0.567136 5_4:+40607552 Msa0850800:CDS
GAATATACAAATCCTTTCAA+AGG 0.567529 5_4:+40608062 Msa0850800:CDS
GCACCTTGAGCAAGACAAGA+GGG 0.570458 5_4:+40608970 Msa0850800:CDS
AAGTTTACCGCGTCATTGTG+CGG 0.570831 5_4:+40608013 Msa0850800:CDS
ATGTACATCTGGTTTAAGCT+GGG 0.572127 5_4:+40607535 Msa0850800:CDS
CGAGTTAGTATGTAAAGCAA+AGG 0.572266 5_4:+40607268 Msa0850800:CDS
CTAGAATAGACATAATGGAT+AGG 0.573963 5_4:-40605350 None:intergenic
AGATACAAAGCACCTGATGC+TGG 0.574516 5_4:+40607104 Msa0850800:CDS
GAAATAGAAGCCAAGTTACA+AGG 0.574590 5_4:+40606477 Msa0850800:CDS
AGCTTCTGAACAAAAGTCCA+AGG 0.575249 5_4:-40610546 None:intergenic
CCTGAGATTAAATGTGATCA+CGG 0.577057 5_4:+40607203 Msa0850800:CDS
CATCAGGCAGCTTCACAGCA+AGG 0.577705 5_4:-40608094 None:intergenic
TGATGAAGATCTACAGCCCT+AGG 0.579045 5_4:-40607443 None:intergenic
ACAATTTCTCCGAAGAAACC+CGG 0.582288 5_4:+40605593 Msa0850800:CDS
CGAGGCCCAAATTATCTGCA+TGG 0.583825 5_4:+40607059 Msa0850800:CDS
TTGCAGTTGCCACAGCAGAC+AGG 0.583880 5_4:-40606204 None:intergenic
AATTGTTCCTCTTTCAATCG+AGG 0.584177 5_4:-40606168 None:intergenic
GACGGGGTGATTCGGTGACT+AGG 0.584547 5_4:+40608180 Msa0850800:CDS
GTCCATAGAGGACAAATTGG+AGG 0.587047 5_4:+40611894 Msa0850800:CDS
GAGGCATGTCCTGTCTGCTG+TGG 0.589956 5_4:+40606195 Msa0850800:CDS
TTTCTTCGGAGAAATTGTGT+TGG 0.590984 5_4:-40605588 None:intergenic
AGTAAATCACAGGTCCATAG+AGG 0.591019 5_4:+40611882 Msa0850800:CDS
CAGAACAAACGCGGGAGCGG+TGG 0.591548 5_4:+40605382 Msa0850800:CDS
CAAGACAAGAGGGAGCTACA+TGG 0.591607 5_4:+40608980 Msa0850800:CDS
GCTGCCCACAACGAAGCTCA+CGG 0.592775 5_4:-40606995 None:intergenic
GAATAGACATAATGGATAGG+AGG 0.597179 5_4:-40605347 None:intergenic
GCAAACTTCCAGTAAATCAC+AGG 0.600882 5_4:+40611872 Msa0850800:CDS
TTGTGGGCAGCTTCTAGGTG+GGG 0.602777 5_4:+40607007 Msa0850800:CDS
AAAAGGTCTGATCATGGATG+GGG 0.603357 5_4:-40610372 None:intergenic
TCTTCAAATAGTTTAGAAGG+AGG 0.604177 5_4:-40607990 None:intergenic
ACAGTCAATTAAAGAAAAGG+AGG 0.606305 5_4:+40606353 Msa0850800:intron
AAGAATCTTGGTGATGGTGA+TGG 0.607702 5_4:+40605554 Msa0850800:CDS
AACGAAGCTCACGGCAACAG+AGG 0.614200 5_4:-40606986 None:intergenic
CAATAAACAGTGGATTGAAG+AGG 0.614571 5_4:+40605961 Msa0850800:intron
TTGACTCTTTCGAACAGCAA+CGG 0.617245 5_4:-40605471 None:intergenic
AGCACCTTGAGCAAGACAAG+AGG 0.618569 5_4:+40608969 Msa0850800:CDS
GAAAGAGGAACAATTTGCTG+AGG 0.620045 5_4:+40606176 Msa0850800:CDS
TGAAGTTCTAAAGCCAGACA+TGG 0.620406 5_4:+40608115 Msa0850800:CDS
TCAAAGAAATGACAAGGGCA+GGG 0.621822 5_4:+40606006 Msa0850800:CDS
AATGAAACTTCAAGATGCAG+AGG 0.623550 5_4:+40607304 Msa0850800:CDS
CCACGTAGGAATCTCAGGCT+GGG 0.630864 5_4:-40607129 None:intergenic
CTACATGGTGATATTCAGGA+TGG 0.633510 5_4:+40608995 Msa0850800:CDS
CCATTGCTCTCCTGTAGAGG+AGG 0.634485 5_4:+40609153 Msa0850800:CDS
CCACCAAGTCCGAAATCTGA+AGG 0.638088 5_4:+40610602 Msa0850800:CDS
TTGCTGTTCGAAAGAGTCAA+CGG 0.641060 5_4:+40605474 Msa0850800:CDS
TCAATGTCAAAGAAATGACA+AGG 0.646775 5_4:+40606000 Msa0850800:CDS
CACGGCAACAGAGGAGACAA+AGG 0.649807 5_4:-40606977 None:intergenic
CCTCCTCTACAGGAGAGCAA+TGG 0.652097 5_4:-40609153 None:intergenic
ATGAACTCCGCACAATGACG+CGG 0.659262 5_4:-40608020 None:intergenic
TGAGTGCTTCCGTTTGACAG+AGG 0.665002 5_4:+40611843 Msa0850800:CDS
GAAGTTCTAAAGCCAGACAT+GGG 0.665837 5_4:+40608116 Msa0850800:CDS
AGAAGAAGCAGCTTCATCGG+TGG 0.666496 5_4:-40605447 None:intergenic
CAACAACAACACATTCACGA+CGG 0.666770 5_4:+40605313 Msa0850800:CDS
TACATGCGCTCATCATTATG+GGG 0.667563 5_4:-40606809 None:intergenic
ATGATATACACAATAACACA+AGG 0.668038 5_4:+40607375 Msa0850800:CDS
TGGGTACACAAATTGTCCCA+AGG 0.669653 5_4:+40607926 Msa0850800:CDS
GGGTGGCATGCTGATAGTGA+CGG 0.679311 5_4:+40607161 Msa0850800:CDS
CGTATATGCTATGATTGATG+TGG 0.680480 5_4:+40612333 Msa0850800:CDS
TATTGCGTATGGATTTGCTG+AGG 0.684331 5_4:+40608151 Msa0850800:CDS
AAGAGACTCAGAACAAACGC+GGG 0.691625 5_4:+40605374 Msa0850800:CDS
TGATTGCTTAGATTGGTGCG+AGG 0.693830 5_4:+40607634 Msa0850800:CDS
GATGTTGTGACCTTATTGTG+AGG 0.707489 5_4:-40605632 None:intergenic
AAAGAGACTCAGAACAAACG+CGG 0.708789 5_4:+40605373 Msa0850800:CDS
CAATGTCAAAGAAATGACAA+GGG 0.710751 5_4:+40606001 Msa0850800:CDS
CTACGTGGTCAAAATCTGGG+TGG 0.719900 5_4:+40607144 Msa0850800:CDS
GCTCTTTGCAAAGAATCCAG+GGG 0.726479 5_4:+40607404 Msa0850800:CDS
CTGCGTCAGACATATCACAA+TGG 0.731463 5_4:-40608205 None:intergenic
TGATATACACAATAACACAA+GGG 0.738813 5_4:+40607376 Msa0850800:CDS
CCCAGCCTGAGATTCCTACG+TGG 0.744551 5_4:+40607129 Msa0850800:CDS
ACAACAACACATTCACGACG+GGG 0.745848 5_4:+40605315 Msa0850800:CDS
TCAATGGCACTGGAGCAAAG+GGG 0.769506 5_4:+40607484 Msa0850800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGAATAGATAAAATAT+AGG - chr5_4:40606304-40606323 None:intergenic 10.0%
!!! TTATTTTCCATTTTTTTAAT+TGG + chr5_4:40606727-40606746 Msa0850800:intron 10.0%
!!! AATTGATTTTGATTCAAAAA+TGG + chr5_4:40605268-40605287 Msa0850800:exon 15.0%
!! AAATTATGTATGTGATTAAT+AGG - chr5_4:40605805-40605824 None:intergenic 15.0%
!! TAAATTAGATTACATTACAT+TGG - chr5_4:40606125-40606144 None:intergenic 15.0%
!! TATTTGAGTATCATATTAAA+AGG + chr5_4:40608412-40608431 Msa0850800:intron 15.0%
!! ATTTGAGTATCATATTAAAA+GGG + chr5_4:40608413-40608432 Msa0850800:intron 15.0%
!!! TTTTTTTTTTTTTGGCTTTT+AGG + chr5_4:40608871-40608890 Msa0850800:intron 15.0%
!! TTATTATAGAACACTATAAT+AGG + chr5_4:40611035-40611054 Msa0850800:intron 15.0%
!! TCTAATATTTAACTAATGTT+TGG + chr5_4:40612171-40612190 Msa0850800:intron 15.0%
!!! AAATGAAAGTGTAAAGAAAT+GGG - chr5_4:40605175-40605194 None:intergenic 20.0%
!! ATTATTATTATTATGCACTG+TGG + chr5_4:40605768-40605787 Msa0850800:intron 20.0%
!! ATTAACTATTCAATAAACAG+TGG + chr5_4:40605951-40605970 Msa0850800:intron 20.0%
!!! TTATATCATTTTTGTTGCTA+AGG + chr5_4:40606142-40606161 Msa0850800:intron 20.0%
!! TATATATAAAATGTGAACCA+TGG - chr5_4:40606562-40606581 None:intergenic 20.0%
!! AACTAAAAAATGATCAATCA+CGG - chr5_4:40606702-40606721 None:intergenic 20.0%
!! CCAAAATCCAATTAAAAAAA+TGG - chr5_4:40606737-40606756 None:intergenic 20.0%
!!! CCATTTTTTTAATTGGATTT+TGG + chr5_4:40606734-40606753 Msa0850800:intron 20.0%
!! GACTTATTTGGTATATAAAT+TGG + chr5_4:40606840-40606859 Msa0850800:intron 20.0%
!! AAGATAAACTCAAAATCAAA+TGG - chr5_4:40607038-40607057 None:intergenic 20.0%
!!! AAGTATTGAAATTGAAAGAT+TGG + chr5_4:40607967-40607986 Msa0850800:CDS 20.0%
!! GGATTTGTATATTCTTTAAA+TGG - chr5_4:40608056-40608075 None:intergenic 20.0%
!! TTTGAGTATCATATTAAAAG+GGG + chr5_4:40608414-40608433 Msa0850800:intron 20.0%
!!! TACATCATATCTTAAGTTTT+TGG + chr5_4:40608509-40608528 Msa0850800:intron 20.0%
!!! GTATTTTGGTAATTGAAAAT+TGG + chr5_4:40608596-40608615 Msa0850800:intron 20.0%
!!! CATTAGATAAGGTATTTTTT+TGG + chr5_4:40608647-40608666 Msa0850800:intron 20.0%
!!! ATAATTTTCTATCATCTGTT+TGG + chr5_4:40609190-40609209 Msa0850800:intron 20.0%
!! GCAAAATGTGAAAAATAAAA+GGG - chr5_4:40609297-40609316 None:intergenic 20.0%
!! AGCAAAATGTGAAAAATAAA+AGG - chr5_4:40609298-40609317 None:intergenic 20.0%
!!! TTTTTCTATGTTGTTATTGT+TGG + chr5_4:40609396-40609415 Msa0850800:intron 20.0%
!! ATTACTGATAGGAATTTATA+GGG - chr5_4:40609472-40609491 None:intergenic 20.0%
!! AATTACTGATAGGAATTTAT+AGG - chr5_4:40609473-40609492 None:intergenic 20.0%
!! ATGTAACTTAAATTACTGAT+AGG - chr5_4:40609483-40609502 None:intergenic 20.0%
!! TACATTGTAATATGTTGTAT+TGG + chr5_4:40609753-40609772 Msa0850800:intron 20.0%
!! AAGTACGAAAATGATTTATA+GGG - chr5_4:40609880-40609899 None:intergenic 20.0%
!! AAAGTACGAAAATGATTTAT+AGG - chr5_4:40609881-40609900 None:intergenic 20.0%
!!! TACTTATTTTGTTTGATTTG+TGG + chr5_4:40610456-40610475 Msa0850800:intron 20.0%
!!! ATGGAAGTTATTTTTTAACT+AGG - chr5_4:40611000-40611019 None:intergenic 20.0%
!!! ATAAGAAGTATAACAGAATA+TGG - chr5_4:40611019-40611038 None:intergenic 20.0%
!! ACATGAAAAAATTGGTTATA+TGG + chr5_4:40611136-40611155 Msa0850800:intron 20.0%
!! TTATATGGAAGTTAATTAAG+TGG + chr5_4:40611151-40611170 Msa0850800:intron 20.0%
!! AAGTTAATTAAGTGGTTATT+GGG + chr5_4:40611159-40611178 Msa0850800:intron 20.0%
!! AATATTATTGATCTAACCTT+AGG - chr5_4:40611301-40611320 None:intergenic 20.0%
!!! TTTTTTTATACATATCAGTG+TGG + chr5_4:40611678-40611697 Msa0850800:intron 20.0%
!!! TCATATCAACAGATTTTTTT+TGG + chr5_4:40612250-40612269 Msa0850800:intron 20.0%
!! GAAATGAAAGTGTAAAGAAA+TGG - chr5_4:40605176-40605195 None:intergenic 25.0%
!!! TCTTTCTAGAATAGACATAA+TGG - chr5_4:40605358-40605377 None:intergenic 25.0%
! AAAAAGAAGAAGAAGAATCT+TGG + chr5_4:40605542-40605561 Msa0850800:CDS 25.0%
! TTCAATGTAATTGTATGTGT+AGG + chr5_4:40605873-40605892 Msa0850800:intron 25.0%
! GTGTAGACTGTATAAAAAAT+TGG + chr5_4:40606065-40606084 Msa0850800:CDS 25.0%
! ACTACAGTCAATTAAAGAAA+AGG + chr5_4:40606350-40606369 Msa0850800:intron 25.0%
! AAACAAGTGACATAAATAAG+AGG - chr5_4:40606536-40606555 None:intergenic 25.0%
! ATGATATACACAATAACACA+AGG + chr5_4:40607375-40607394 Msa0850800:CDS 25.0%
! TGATATACACAATAACACAA+GGG + chr5_4:40607376-40607395 Msa0850800:CDS 25.0%
! ACATTAATATCTATCTGCAT+CGG - chr5_4:40607891-40607910 None:intergenic 25.0%
! TCTTTCAATTTCAATACTTG+AGG - chr5_4:40607966-40607985 None:intergenic 25.0%
! CTTTCTTCAAATAGTTTAGA+AGG - chr5_4:40607996-40608015 None:intergenic 25.0%
! TGTATATTCTTTAAATGGCA+AGG - chr5_4:40608051-40608070 None:intergenic 25.0%
! GAATATACAAATCCTTTCAA+AGG + chr5_4:40608062-40608081 Msa0850800:CDS 25.0%
!! ATTTGAAATGCTATTTACCT+TGG + chr5_4:40608574-40608593 Msa0850800:intron 25.0%
! TTTCAATTACCAAAATACCA+AGG - chr5_4:40608594-40608613 None:intergenic 25.0%
! ATTAGTTGCATCATTAGATA+AGG + chr5_4:40608636-40608655 Msa0850800:intron 25.0%
!! TGAAATATGAAAGATGGTTT+TGG + chr5_4:40608673-40608692 Msa0850800:intron 25.0%
! GCACAAACAAATAATTAATC+CGG - chr5_4:40608747-40608766 None:intergenic 25.0%
! GCTAAGAATTAAGTCAAATA+GGG - chr5_4:40609361-40609380 None:intergenic 25.0%
! AGCTAAGAATTAAGTCAAAT+AGG - chr5_4:40609362-40609381 None:intergenic 25.0%
! TACCTTGTAATATGTTCTAT+GGG + chr5_4:40609429-40609448 Msa0850800:intron 25.0%
! TATAGGGAGTTAAATTATGA+AGG - chr5_4:40609456-40609475 None:intergenic 25.0%
! ATAAAAAATGCCCATAATGA+AGG + chr5_4:40609531-40609550 Msa0850800:intron 25.0%
!!! TGAGTAGTTAGTTTTGAATA+CGG + chr5_4:40610081-40610100 Msa0850800:intron 25.0%
! TTTCAATTTCAAAGTTCACT+TGG + chr5_4:40610241-40610260 Msa0850800:intron 25.0%
! GTGTTGAATTGTTAACAAAA+TGG - chr5_4:40610504-40610523 None:intergenic 25.0%
!!! GTGGATTTGTTTTATAATGA+AGG + chr5_4:40610642-40610661 Msa0850800:intron 25.0%
! TATTTAGCACTAATTCAACA+AGG - chr5_4:40610893-40610912 None:intergenic 25.0%
! ATAATAGGAGATTTCTTACT+TGG + chr5_4:40611050-40611069 Msa0850800:intron 25.0%
! GAAGTTAATTAAGTGGTTAT+TGG + chr5_4:40611158-40611177 Msa0850800:intron 25.0%
! AATAGGAATATGATACAAAC+TGG - chr5_4:40611355-40611374 None:intergenic 25.0%
! TCCTATTTAAACATTCCTAA+TGG + chr5_4:40611368-40611387 Msa0850800:intron 25.0%
! CCTATTTAAACATTCCTAAT+GGG + chr5_4:40611369-40611388 Msa0850800:intron 25.0%
! CTATTTAAACATTCCTAATG+GGG + chr5_4:40611370-40611389 Msa0850800:intron 25.0%
! TATTTAAACATTCCTAATGG+GGG + chr5_4:40611371-40611390 Msa0850800:intron 25.0%
! TGATATCTTAGTATTTAGCT+TGG + chr5_4:40611580-40611599 Msa0850800:intron 25.0%
! TAATCAAATCCATAATAGTC+AGG - chr5_4:40611924-40611943 None:intergenic 25.0%
! TGGATTTGATTATTCTGTTT+AGG + chr5_4:40611932-40611951 Msa0850800:intron 25.0%
! GGATTTGATTATTCTGTTTA+GGG + chr5_4:40611933-40611952 Msa0850800:intron 25.0%
! ACTCTTTACTAGATTCTATA+TGG - chr5_4:40612088-40612107 None:intergenic 25.0%
! AAACTACAATACTACTAGAT+AGG - chr5_4:40612134-40612153 None:intergenic 25.0%
!!! GTAGTTTTAATGTAAAGACA+AGG + chr5_4:40612147-40612166 Msa0850800:intron 25.0%
! ATCAATTTTCAAATGCAGCA+GGG - chr5_4:40605255-40605274 None:intergenic 30.0%
! AATCAATTTTCAAATGCAGC+AGG - chr5_4:40605256-40605275 None:intergenic 30.0%
!! CTAGAATAGACATAATGGAT+AGG - chr5_4:40605353-40605372 None:intergenic 30.0%
AATTAGTCACTCATCAGATT+AGG - chr5_4:40605934-40605953 None:intergenic 30.0%
! TTGACATTGATGACACATTA+AGG - chr5_4:40605990-40606009 None:intergenic 30.0%
TCAATGTCAAAGAAATGACA+AGG + chr5_4:40606000-40606019 Msa0850800:CDS 30.0%
CAATGTCAAAGAAATGACAA+GGG + chr5_4:40606001-40606020 Msa0850800:CDS 30.0%
! ATATCTTTTCCGTTTGCATT+TGG - chr5_4:40606044-40606063 None:intergenic 30.0%
ACAGTCAATTAAAGAAAAGG+AGG + chr5_4:40606353-40606372 Msa0850800:intron 30.0%
TCTTCCACATTTAATACGAT+TGG + chr5_4:40606431-40606450 Msa0850800:CDS 30.0%
TGATCCAATCGTATTAAATG+TGG - chr5_4:40606438-40606457 None:intergenic 30.0%
GGAAAAAATACCTTGTAACT+TGG - chr5_4:40606490-40606509 None:intergenic 30.0%
!!! TATGTCACTTGTTTTTTCCA+TGG + chr5_4:40606542-40606561 Msa0850800:intron 30.0%
AAGTTATCGAAGAGAAAGAA+AGG - chr5_4:40606585-40606604 None:intergenic 30.0%
AGTCATTAACAATGTAGCAT+TGG - chr5_4:40606883-40606902 None:intergenic 30.0%
! TCACATTTAATCTCAGGTTT+TGG - chr5_4:40607200-40607219 None:intergenic 30.0%
! AAAATACGCTTTTCAGTTCA+AGG - chr5_4:40607232-40607251 None:intergenic 30.0%
CTTTGCTTTACATACTAACT+CGG - chr5_4:40607270-40607289 None:intergenic 30.0%
ATATCATCTCTATTCCTAAC+AGG - chr5_4:40607362-40607381 None:intergenic 30.0%
! ATGATGTAGGACATTTTCAA+TGG + chr5_4:40607468-40607487 Msa0850800:CDS 30.0%
AATGTACTTGAATGTACATC+TGG + chr5_4:40607524-40607543 Msa0850800:CDS 30.0%
AAACAGAAAAACAGAAAGCA+GGG - chr5_4:40607756-40607775 None:intergenic 30.0%
AAAGAAAATGAACACAACTG+GGG - chr5_4:40607793-40607812 None:intergenic 30.0%
GAAAGAAAATGAACACAACT+GGG - chr5_4:40607794-40607813 None:intergenic 30.0%
TGAAAGAAAATGAACACAAC+TGG - chr5_4:40607795-40607814 None:intergenic 30.0%
AGAAGTTACAAGCAACTTAT+AGG - chr5_4:40607847-40607866 None:intergenic 30.0%
TCTTCAAATAGTTTAGAAGG+AGG - chr5_4:40607993-40608012 None:intergenic 30.0%
! CCATACGCAATATATGTTTT+TGG - chr5_4:40608143-40608162 None:intergenic 30.0%
CCAAAAACATATATTGCGTA+TGG + chr5_4:40608140-40608159 Msa0850800:CDS 30.0%
! TAAATTCTCTGAGTTTTTCC+TGG + chr5_4:40608234-40608253 Msa0850800:intron 30.0%
! TTAAAAGGGGCATAATTTGT+AGG + chr5_4:40608427-40608446 Msa0850800:intron 30.0%
!! TGCTATTTACCTTGGTATTT+TGG + chr5_4:40608582-40608601 Msa0850800:intron 30.0%
! TGGTCTTGAAATATGAAAGA+TGG + chr5_4:40608667-40608686 Msa0850800:intron 30.0%
CAGTTCTTTACTCTATTATG+AGG + chr5_4:40608836-40608855 Msa0850800:intron 30.0%
! CAACAAACTATTTTCAACAG+TGG - chr5_4:40609026-40609045 None:intergenic 30.0%
! CACTGTTGAAAATAGTTTGT+TGG + chr5_4:40609024-40609043 Msa0850800:CDS 30.0%
!! GTTGAAAATAGTTTGTTGGT+TGG + chr5_4:40609028-40609047 Msa0850800:CDS 30.0%
!! AAAATAGTTTGTTGGTTGGT+GGG + chr5_4:40609032-40609051 Msa0850800:CDS 30.0%
ATTAATGACTCCAGTTAACA+GGG - chr5_4:40609221-40609240 None:intergenic 30.0%
GTACCTTGTAATATGTTCTA+TGG + chr5_4:40609428-40609447 Msa0850800:intron 30.0%
ACCTTGTAATATGTTCTATG+GGG + chr5_4:40609430-40609449 Msa0850800:intron 30.0%
! ACCCAAATCTCTCTTTTTAT+AGG + chr5_4:40609709-40609728 Msa0850800:intron 30.0%
CCCTATAAAAAGAGAGATTT+GGG - chr5_4:40609713-40609732 None:intergenic 30.0%
! CCCAAATCTCTCTTTTTATA+GGG + chr5_4:40609710-40609729 Msa0850800:intron 30.0%
ACCCTATAAAAAGAGAGATT+TGG - chr5_4:40609714-40609733 None:intergenic 30.0%
! TAATATGTTGTATTGGTCCT+TGG + chr5_4:40609760-40609779 Msa0850800:intron 30.0%
GAGAAAACAAGAGATAATGA+AGG - chr5_4:40609962-40609981 None:intergenic 30.0%
AGTGATTACTTACATCTGTT+AGG + chr5_4:40609986-40610005 Msa0850800:intron 30.0%
ACAAAATTCCATACTCATGA+TGG - chr5_4:40610108-40610127 None:intergenic 30.0%
! AATTTTGTTGATGCGAATAG+CGG + chr5_4:40610120-40610139 Msa0850800:intron 30.0%
ATATGAAGGGAAATGCATAA+TGG + chr5_4:40610157-40610176 Msa0850800:intron 30.0%
TGAAAGAACATCTACTGAAT+CGG - chr5_4:40610208-40610227 None:intergenic 30.0%
! TTTTTGAATGACATCTCCTT+TGG + chr5_4:40610333-40610352 Msa0850800:intron 30.0%
TGAATAACCTATAATGCCAA+AGG - chr5_4:40610352-40610371 None:intergenic 30.0%
TTAGATAAAAGGTCTGATCA+TGG - chr5_4:40610381-40610400 None:intergenic 30.0%
! CAAGTTTTACCTTCAGATTT+CGG - chr5_4:40610614-40610633 None:intergenic 30.0%
TTCTCAAACTTTCAAGAACT+TGG - chr5_4:40610833-40610852 None:intergenic 30.0%
AATACCAGTATACAACTACT+AGG - chr5_4:40610859-40610878 None:intergenic 30.0%
AAGACTAAATGCTAATTCCT+AGG + chr5_4:40610952-40610971 Msa0850800:intron 30.0%
GTTGTAATAATGTTCTACCT+AGG - chr5_4:40610972-40610991 None:intergenic 30.0%
GGTAGAACATTATTACAACA+AGG + chr5_4:40610973-40610992 Msa0850800:intron 30.0%
TGGGAAAGACATGAAAAAAT+TGG + chr5_4:40611128-40611147 Msa0850800:intron 30.0%
CCCATTAGGAATGTTTAAAT+AGG - chr5_4:40611372-40611391 None:intergenic 30.0%
!!! GCTAGTTTTGTGATTTGATT+AGG - chr5_4:40611448-40611467 None:intergenic 30.0%
! ATGGCTTGAAGTATTTATGT+GGG - chr5_4:40611490-40611509 None:intergenic 30.0%
! TATGGCTTGAAGTATTTATG+TGG - chr5_4:40611491-40611510 None:intergenic 30.0%
GCTAAATACTAAGATATCAG+AGG - chr5_4:40611579-40611598 None:intergenic 30.0%
GGTAATCTGTAAGAAATTGT+AGG - chr5_4:40611713-40611732 None:intergenic 30.0%
! TATTCTGTTTAGGGTTGATT+AGG + chr5_4:40611942-40611961 Msa0850800:intron 30.0%
! CTTTCAGTTACACCTATTTT+TGG + chr5_4:40611967-40611986 Msa0850800:intron 30.0%
TCAAATCTCTGAACATTTGT+TGG + chr5_4:40612010-40612029 Msa0850800:intron 30.0%
! TCAATTTTCAAATGCAGCAG+GGG - chr5_4:40605254-40605273 None:intergenic 35.0%
!! GAATAGACATAATGGATAGG+AGG - chr5_4:40605350-40605369 None:intergenic 35.0%
TTTCTTCTTGTCTACCAAGA+CGG - chr5_4:40605525-40605544 None:intergenic 35.0%
AAGAAGAAGAATCTTGGTGA+TGG + chr5_4:40605548-40605567 Msa0850800:CDS 35.0%
TTTCTTCGGAGAAATTGTGT+TGG - chr5_4:40605591-40605610 None:intergenic 35.0%
! TTTCTTTTTCCGGGTTTCTT+CGG - chr5_4:40605605-40605624 None:intergenic 35.0%
! AGGAGTCTGTTTTCTTTTTC+CGG - chr5_4:40605615-40605634 None:intergenic 35.0%
AAAACAGACTCCTCACAATA+AGG + chr5_4:40605622-40605641 Msa0850800:CDS 35.0%
GTAATTGTATGTGTAGGTGT+CGG + chr5_4:40605879-40605898 Msa0850800:intron 35.0%
!! CAATAAACAGTGGATTGAAG+AGG + chr5_4:40605961-40605980 Msa0850800:intron 35.0%
AATTGTTCCTCTTTCAATCG+AGG - chr5_4:40606171-40606190 None:intergenic 35.0%
GTCAATTAAAGAAAAGGAGG+AGG + chr5_4:40606356-40606375 Msa0850800:intron 35.0%
!! AAGAGCTTTGAGCATATACT+TGG - chr5_4:40606412-40606431 None:intergenic 35.0%
ACGATTGGATCAAGAACAAA+TGG + chr5_4:40606446-40606465 Msa0850800:CDS 35.0%
GAAATAGAAGCCAAGTTACA+AGG + chr5_4:40606477-40606496 Msa0850800:CDS 35.0%
AGACAAAAAAGCAAGAAGAG+AGG - chr5_4:40606511-40606530 None:intergenic 35.0%
CAGGAAAAATAGTGTAAAGC+AGG - chr5_4:40606624-40606643 None:intergenic 35.0%
! CATAAACAAAAAGCACATGC+AGG - chr5_4:40606643-40606662 None:intergenic 35.0%
TTGTATTTCGTCTCATGTGT+CGG + chr5_4:40606671-40606690 Msa0850800:intron 35.0%
!!! GATTTTGAGTTTATCTTCCG+AGG + chr5_4:40607041-40607060 Msa0850800:CDS 35.0%
CTTCACCATGCAGATAATTT+GGG - chr5_4:40607067-40607086 None:intergenic 35.0%
ACTTCACCATGCAGATAATT+TGG - chr5_4:40607068-40607087 None:intergenic 35.0%
!!! TTAATCTCAGGTTTTGGACA+GGG - chr5_4:40607194-40607213 None:intergenic 35.0%
!!! TTTAATCTCAGGTTTTGGAC+AGG - chr5_4:40607195-40607214 None:intergenic 35.0%
CCTGAGATTAAATGTGATCA+CGG + chr5_4:40607203-40607222 Msa0850800:CDS 35.0%
CGAGTTAGTATGTAAAGCAA+AGG + chr5_4:40607268-40607287 Msa0850800:CDS 35.0%
AATGAAACTTCAAGATGCAG+AGG + chr5_4:40607304-40607323 Msa0850800:CDS 35.0%
! CAACTTTTTGTACTGTCCTA+GGG + chr5_4:40607427-40607446 Msa0850800:CDS 35.0%
AGTACATTGCTGACAATTAC+AGG - chr5_4:40607512-40607531 None:intergenic 35.0%
! AATGTACATCTGGTTTAAGC+TGG + chr5_4:40607534-40607553 Msa0850800:CDS 35.0%
! ATGTACATCTGGTTTAAGCT+GGG + chr5_4:40607535-40607554 Msa0850800:CDS 35.0%
!! GAACAAGAACAAGTCACTTT+TGG + chr5_4:40607598-40607617 Msa0850800:CDS 35.0%
!!! CAAGTCACTTTTGGATGTTA+AGG + chr5_4:40607607-40607626 Msa0850800:CDS 35.0%
AACAGAAAAACAGAAAGCAG+GGG - chr5_4:40607755-40607774 None:intergenic 35.0%
GAAACAGAAAAACAGAAAGC+AGG - chr5_4:40607757-40607776 None:intergenic 35.0%
AATGTGCACCAATTCTTTAC+TGG + chr5_4:40607906-40607925 Msa0850800:CDS 35.0%
ATGTGCACCAATTCTTTACT+GGG + chr5_4:40607907-40607926 Msa0850800:CDS 35.0%
TTGTGTACCCAGTAAAGAAT+TGG - chr5_4:40607917-40607936 None:intergenic 35.0%
GTCCCAAGGATAATCATAAT+TGG + chr5_4:40607940-40607959 Msa0850800:CDS 35.0%
GGCCAATTATGATTATCCTT+GGG - chr5_4:40607945-40607964 None:intergenic 35.0%
AGGCCAATTATGATTATCCT+TGG - chr5_4:40607946-40607965 None:intergenic 35.0%
ACTATCAGCTCTTAATGCAA+TGG - chr5_4:40608475-40608494 None:intergenic 35.0%
CATCAGATGAATTGTCTTTC+CGG + chr5_4:40608725-40608744 Msa0850800:intron 35.0%
TCATATTGCTGAAGCAAAAC+TGG + chr5_4:40608907-40608926 Msa0850800:CDS 35.0%
!! GAAAATAGTTTGTTGGTTGG+TGG + chr5_4:40609031-40609050 Msa0850800:CDS 35.0%
!! AAATAGTTTGTTGGTTGGTG+GGG + chr5_4:40609033-40609052 Msa0850800:CDS 35.0%
!!! GTGCTCTTTGGGATATTTTT+CGG + chr5_4:40609068-40609087 Msa0850800:CDS 35.0%
TTAATGACTCCAGTTAACAG+GGG - chr5_4:40609220-40609239 None:intergenic 35.0%
CATTAATGACTCCAGTTAAC+AGG - chr5_4:40609222-40609241 None:intergenic 35.0%
TTCACAGCAGCAAAACTAAT+CGG - chr5_4:40609259-40609278 None:intergenic 35.0%
! TTTTTCACATTTTGCTGCCA+CGG + chr5_4:40609302-40609321 Msa0850800:intron 35.0%
AAGGTCTCTACAAAAAGAGT+GGG - chr5_4:40609633-40609652 None:intergenic 35.0%
TAAGTTCTGCCTAGCTTAAA+AGG + chr5_4:40609807-40609826 Msa0850800:intron 35.0%
GCTTCTTTATGTAGATGACT+TGG + chr5_4:40610275-40610294 Msa0850800:intron 35.0%
TAAAAGGTCTGATCATGGAT+GGG - chr5_4:40610376-40610395 None:intergenic 35.0%
ATAAAAGGTCTGATCATGGA+TGG - chr5_4:40610377-40610396 None:intergenic 35.0%
! CAGACCTTTTATCTAACCAT+CGG + chr5_4:40610385-40610404 Msa0850800:CDS 35.0%
! AGACCTTTTATCTAACCATC+GGG + chr5_4:40610386-40610405 Msa0850800:CDS 35.0%
AAAAAGCTGAAGGAAGAGTA+TGG + chr5_4:40610415-40610434 Msa0850800:CDS 35.0%
TTTGTGGAGTGTAGATCAAT+AGG + chr5_4:40610472-40610491 Msa0850800:intron 35.0%
TTGTGGAGTGTAGATCAATA+GGG + chr5_4:40610473-40610492 Msa0850800:intron 35.0%
!! TTCAACACTGACTTGTATGT+AGG + chr5_4:40610516-40610535 Msa0850800:intron 35.0%
GAAGGTAAAACTTGCATACA+TGG + chr5_4:40610620-40610639 Msa0850800:intron 35.0%
TCTACACTTCTTAGCAAACA+AGG - chr5_4:40610678-40610697 None:intergenic 35.0%
ATGTCCTAGTAGTTGTATAC+TGG + chr5_4:40610852-40610871 Msa0850800:intron 35.0%
TAGGAGATTTCTTACTTGGT+TGG + chr5_4:40611054-40611073 Msa0850800:intron 35.0%
TGTGTGTCAGTTATGTAAAG+TGG + chr5_4:40611108-40611127 Msa0850800:intron 35.0%
GTGTGTCAGTTATGTAAAGT+GGG + chr5_4:40611109-40611128 Msa0850800:intron 35.0%
GTTATTGGGACTCAAAATCA+TGG + chr5_4:40611173-40611192 Msa0850800:intron 35.0%
TATATGAATCCCTTCTCCTA+AGG + chr5_4:40611282-40611301 Msa0850800:intron 35.0%
TTGATCTAACCTTAGGAGAA+GGG - chr5_4:40611294-40611313 None:intergenic 35.0%
ATTGATCTAACCTTAGGAGA+AGG - chr5_4:40611295-40611314 None:intergenic 35.0%
AATTCTATGCTCACATCCAT+AGG - chr5_4:40611416-40611435 None:intergenic 35.0%
ATCTAGACGTCTAGATGATA+TGG - chr5_4:40611509-40611528 None:intergenic 35.0%
CATTAACTTCAGTGACTCAT+TGG - chr5_4:40611618-40611637 None:intergenic 35.0%
GAGCTAGTGAGTAATTGATT+GGG - chr5_4:40611734-40611753 None:intergenic 35.0%
TGAGCTAGTGAGTAATTGAT+TGG - chr5_4:40611735-40611754 None:intergenic 35.0%
TTTGTCTCTCCTGAAAATGT+TGG + chr5_4:40611820-40611839 Msa0850800:CDS 35.0%
TGTGATTTACTGGAAGTTTG+CGG - chr5_4:40611873-40611892 None:intergenic 35.0%
AACATGACAGTGCCAAAAAT+AGG - chr5_4:40611982-40612001 None:intergenic 35.0%
! AATCTCTGAACATTTGTTGG+TGG + chr5_4:40612013-40612032 Msa0850800:intron 35.0%
!! ATTGCTGCTTCTTTTGTAAC+AGG + chr5_4:40612297-40612316 Msa0850800:intron 35.0%
CGTATATGCTATGATTGATG+TGG + chr5_4:40612333-40612352 Msa0850800:CDS 35.0%
GATTGATGTGGTCAAAAAGT+TGG + chr5_4:40612345-40612364 Msa0850800:CDS 35.0%
TCAAAAAGTTGGAGAAAGCA+AGG + chr5_4:40612356-40612375 Msa0850800:CDS 35.0%
ATTCAAAAATGGCGTTTGCG+AGG + chr5_4:40605279-40605298 Msa0850800:exon 40.0%
TTCAAAAATGGCGTTTGCGA+GGG + chr5_4:40605280-40605299 Msa0850800:exon 40.0%
CAACAACAACACATTCACGA+CGG + chr5_4:40605313-40605332 Msa0850800:CDS 40.0%
AACAACAACACATTCACGAC+GGG + chr5_4:40605314-40605333 Msa0850800:CDS 40.0%
AAAGAGACTCAGAACAAACG+CGG + chr5_4:40605373-40605392 Msa0850800:CDS 40.0%
TTGACTCTTTCGAACAGCAA+CGG - chr5_4:40605474-40605493 None:intergenic 40.0%
! TTGCTGTTCGAAAGAGTCAA+CGG + chr5_4:40605474-40605493 Msa0850800:CDS 40.0%
AACAATAAATGCTCCCGTCT+TGG + chr5_4:40605508-40605527 Msa0850800:CDS 40.0%
TTCTTCTTGTCTACCAAGAC+GGG - chr5_4:40605524-40605543 None:intergenic 40.0%
!! AAGAATCTTGGTGATGGTGA+TGG + chr5_4:40605554-40605573 Msa0850800:CDS 40.0%
ACAATTTCTCCGAAGAAACC+CGG + chr5_4:40605593-40605612 Msa0850800:CDS 40.0%
! GGAGTCTGTTTTCTTTTTCC+GGG - chr5_4:40605614-40605633 None:intergenic 40.0%
GATGTTGTGACCTTATTGTG+AGG - chr5_4:40605635-40605654 None:intergenic 40.0%
TCAAAGAAATGACAAGGGCA+GGG + chr5_4:40606006-40606025 Msa0850800:CDS 40.0%
TCAGATGCACCAAATGCAAA+CGG + chr5_4:40606032-40606051 Msa0850800:CDS 40.0%
! AAGGTATCCTCGATTGAAAG+AGG + chr5_4:40606161-40606180 Msa0850800:intron 40.0%
!! GAAAGAGGAACAATTTGCTG+AGG + chr5_4:40606176-40606195 Msa0850800:CDS 40.0%
! GCAAAGCTTGTTTGAAGTCA+CGG + chr5_4:40606229-40606248 Msa0850800:CDS 40.0%
CTTGGCTTCTATTTCCTTCT+CGG - chr5_4:40606472-40606491 None:intergenic 40.0%
!! GATTTTGGTATCAACGTTGC+AGG + chr5_4:40606749-40606768 Msa0850800:intron 40.0%
TACATGCGCTCATCATTATG+GGG - chr5_4:40606812-40606831 None:intergenic 40.0%
GTACATGCGCTCATCATTAT+GGG - chr5_4:40606813-40606832 None:intergenic 40.0%
AGTACATGCGCTCATCATTA+TGG - chr5_4:40606814-40606833 None:intergenic 40.0%
ATAATGATGAGCGCATGTAC+TGG + chr5_4:40606813-40606832 Msa0850800:CDS 40.0%
! TGTACTGGTAGGGACTTATT+TGG + chr5_4:40606828-40606847 Msa0850800:intron 40.0%
ATTCCTACGTGGTCAAAATC+TGG + chr5_4:40607140-40607159 Msa0850800:CDS 40.0%
TTCCTACGTGGTCAAAATCT+GGG + chr5_4:40607141-40607160 Msa0850800:CDS 40.0%
CCGTGATCACATTTAATCTC+AGG - chr5_4:40607206-40607225 None:intergenic 40.0%
! GCTCTTGTTTGAATCCTGTT+AGG + chr5_4:40607345-40607364 Msa0850800:CDS 40.0%
AGCTCTTTGCAAAGAATCCA+GGG + chr5_4:40607403-40607422 Msa0850800:CDS 40.0%
! GCAACTTTTTGTACTGTCCT+AGG + chr5_4:40607426-40607445 Msa0850800:CDS 40.0%
GATCTTCATCACGATGATGT+AGG + chr5_4:40607455-40607474 Msa0850800:CDS 40.0%
! TAGGACATTTTCAATGGCAC+TGG + chr5_4:40607474-40607493 Msa0850800:CDS 40.0%
AGGCACTTGATTGCTTAGAT+TGG + chr5_4:40607627-40607646 Msa0850800:CDS 40.0%
TGATCTTTGAGCTTCTCATG+CGG + chr5_4:40607702-40607721 Msa0850800:intron 40.0%
!! TCTGGCTTTAGAACTTCATC+AGG - chr5_4:40608113-40608132 None:intergenic 40.0%
!! TGAAGTTCTAAAGCCAGACA+TGG + chr5_4:40608115-40608134 Msa0850800:CDS 40.0%
!! GAAGTTCTAAAGCCAGACAT+GGG + chr5_4:40608116-40608135 Msa0850800:CDS 40.0%
!!! TATGTTTTTGGTCCCATGTC+TGG - chr5_4:40608131-40608150 None:intergenic 40.0%
!! TATTGCGTATGGATTTGCTG+AGG + chr5_4:40608151-40608170 Msa0850800:CDS 40.0%
GATGTATACGATGCCTTTGT+AGG + chr5_4:40608449-40608468 Msa0850800:intron 40.0%
CTTAATGCAATGGCCTACAA+AGG - chr5_4:40608465-40608484 None:intergenic 40.0%
CGGAAAGACAATTCATCTGA+TGG - chr5_4:40608727-40608746 None:intergenic 40.0%
CTGAAGCAAAACTGGATAGT+GGG + chr5_4:40608915-40608934 Msa0850800:CDS 40.0%
CTACATGGTGATATTCAGGA+TGG + chr5_4:40608995-40609014 Msa0850800:CDS 40.0%
ATTCCTTAGATGGTGCTCTT+TGG + chr5_4:40609056-40609075 Msa0850800:CDS 40.0%
TTCCTTAGATGGTGCTCTTT+GGG + chr5_4:40609057-40609076 Msa0850800:CDS 40.0%
!! TTGGGATATTTTTCGGAGAG+AGG + chr5_4:40609075-40609094 Msa0850800:CDS 40.0%
TTCAGATATTCCTGCAATGC+AGG - chr5_4:40609106-40609125 None:intergenic 40.0%
!! AGAAGCATTTCAGAGAGTTC+AGG + chr5_4:40609125-40609144 Msa0850800:CDS 40.0%
ACTAACTTTACCTCCTCTAC+AGG - chr5_4:40609166-40609185 None:intergenic 40.0%
TAATGACTCCAGTTAACAGG+GGG - chr5_4:40609219-40609238 None:intergenic 40.0%
TGTCAACTTTATCATGTCCG+TGG - chr5_4:40609322-40609341 None:intergenic 40.0%
GCCCCATAGAACATATTACA+AGG - chr5_4:40609434-40609453 None:intergenic 40.0%
CTGCAGGATACCTTCATTAT+GGG - chr5_4:40609544-40609563 None:intergenic 40.0%
ACTGCAGGATACCTTCATTA+TGG - chr5_4:40609545-40609564 None:intergenic 40.0%
CAAGGTCTCTACAAAAAGAG+TGG - chr5_4:40609634-40609653 None:intergenic 40.0%
AGAACTTACCAATGTGTTGC+AGG - chr5_4:40609795-40609814 None:intergenic 40.0%
! TAGGGAAGTGCAATCTGTTA+TGG - chr5_4:40609862-40609881 None:intergenic 40.0%
ATTACCAGCTTGATCATTCG+AGG - chr5_4:40610049-40610068 None:intergenic 40.0%
AATACGGACCATCATGAGTA+TGG + chr5_4:40610097-40610116 Msa0850800:intron 40.0%
GATGTAATTTCCAGTCCCTT+AGG + chr5_4:40610179-40610198 Msa0850800:intron 40.0%
AAAGTTCACTTGGCAGTAGA+CGG + chr5_4:40610251-40610270 Msa0850800:intron 40.0%
GACATCTCCTTTGGCATTAT+AGG + chr5_4:40610342-40610361 Msa0850800:intron 40.0%
AAAAGGTCTGATCATGGATG+GGG - chr5_4:40610375-40610394 None:intergenic 40.0%
ATGCCCGATGGTTAGATAAA+AGG - chr5_4:40610392-40610411 None:intergenic 40.0%
!! TGTATGTAGGTATTGAGCCT+TGG + chr5_4:40610529-40610548 Msa0850800:intron 40.0%
AGCTTCTGAACAAAAGTCCA+AGG - chr5_4:40610549-40610568 None:intergenic 40.0%
! TGGACTTTTGTTCAGAAGCT+TGG + chr5_4:40610549-40610568 Msa0850800:CDS 40.0%
! GATGCAATTTTCATTCCAGC+TGG + chr5_4:40610573-40610592 Msa0850800:CDS 40.0%
TTACCTTCAGATTTCGGACT+TGG - chr5_4:40610608-40610627 None:intergenic 40.0%
GGTAAAACTTGCATACATGG+TGG + chr5_4:40610623-40610642 Msa0850800:intron 40.0%
GAACAGGAACACACTTAACA+GGG - chr5_4:40611217-40611236 None:intergenic 40.0%
AGAACAGGAACACACTTAAC+AGG - chr5_4:40611218-40611237 None:intergenic 40.0%
GTTACAAGACAAGACAGAAC+AGG - chr5_4:40611233-40611252 None:intergenic 40.0%
TTAAACATTCCTAATGGGGG+AGG + chr5_4:40611374-40611393 Msa0850800:intron 40.0%
TAAACATTCCTAATGGGGGA+GGG + chr5_4:40611375-40611394 Msa0850800:intron 40.0%
TCTAGATCGTTACTCGAGTA+GGG + chr5_4:40611522-40611541 Msa0850800:intron 40.0%
GAGGCTATGCTATATCCATT+TGG - chr5_4:40611560-40611579 None:intergenic 40.0%
!! CATTTTTCAGTCATGCACCA+AGG + chr5_4:40611786-40611805 Msa0850800:intron 40.0%
GACAAAATCAAGTGCAACCT+TGG - chr5_4:40611806-40611825 None:intergenic 40.0%
! AAGCACTCACCAACATTTTC+AGG - chr5_4:40611832-40611851 None:intergenic 40.0%
GCAAACTTCCAGTAAATCAC+AGG + chr5_4:40611872-40611891 Msa0850800:CDS 40.0%
TCTATGGACCTGTGATTTAC+TGG - chr5_4:40611883-40611902 None:intergenic 40.0%
AGTAAATCACAGGTCCATAG+AGG + chr5_4:40611882-40611901 Msa0850800:CDS 40.0%
TACCTCCAATTTGTCCTCTA+TGG - chr5_4:40611899-40611918 None:intergenic 40.0%
! TTTTCAAATGCAGCAGGGGT+GGG - chr5_4:40605250-40605269 None:intergenic 45.0%
! ATTTTCAAATGCAGCAGGGG+TGG - chr5_4:40605251-40605270 None:intergenic 45.0%
ACAACAACACATTCACGACG+GGG + chr5_4:40605315-40605334 Msa0850800:CDS 45.0%
AAGAGACTCAGAACAAACGC+GGG + chr5_4:40605374-40605393 Msa0850800:CDS 45.0%
GGAAGAAGAAGCAGCTTCAT+CGG - chr5_4:40605453-40605472 None:intergenic 45.0%
CTCATCAGATTAGGTGTGTC+CGG - chr5_4:40605925-40605944 None:intergenic 45.0%
GTCAAAGAAATGACAAGGGC+AGG + chr5_4:40606005-40606024 Msa0850800:CDS 45.0%
GGAAACCAACGATCATCATC+AGG + chr5_4:40606377-40606396 Msa0850800:CDS 45.0%
! CTCAACCTGATGATGATCGT+TGG - chr5_4:40606385-40606404 None:intergenic 45.0%
TCAAGAACAAATGGCCGAGA+AGG + chr5_4:40606455-40606474 Msa0850800:CDS 45.0%
AGCATTCTGTGCAGCTTCTA+TGG - chr5_4:40606950-40606969 None:intergenic 45.0%
CATGCAGATAATTTGGGCCT+CGG - chr5_4:40607061-40607080 None:intergenic 45.0%
AGCATCAGGTGCTTTGTATC+TGG - chr5_4:40607105-40607124 None:intergenic 45.0%
! AGATACAAAGCACCTGATGC+TGG + chr5_4:40607104-40607123 Msa0850800:CDS 45.0%
TTTGACCACGTAGGAATCTC+AGG - chr5_4:40607137-40607156 None:intergenic 45.0%
ACTAACTCGGAGATGCATTC+TGG - chr5_4:40607257-40607276 None:intergenic 45.0%
CAGCTCTTTGCAAAGAATCC+AGG + chr5_4:40607402-40607421 Msa0850800:CDS 45.0%
GCTCTTTGCAAAGAATCCAG+GGG + chr5_4:40607404-40607423 Msa0850800:CDS 45.0%
ACAGTACAAAAAGTTGCCCC+TGG - chr5_4:40607423-40607442 None:intergenic 45.0%
TGATGAAGATCTACAGCCCT+AGG - chr5_4:40607446-40607465 None:intergenic 45.0%
! TTTCAATGGCACTGGAGCAA+AGG + chr5_4:40607482-40607501 Msa0850800:CDS 45.0%
! TTCAATGGCACTGGAGCAAA+GGG + chr5_4:40607483-40607502 Msa0850800:CDS 45.0%
AATGCACGCCACATGACAAA+CGG - chr5_4:40607563-40607582 None:intergenic 45.0%
TGATTGCTTAGATTGGTGCG+AGG + chr5_4:40607634-40607653 Msa0850800:CDS 45.0%
TGGGTACACAAATTGTCCCA+AGG + chr5_4:40607926-40607945 Msa0850800:CDS 45.0%
AAGTTTACCGCGTCATTGTG+CGG + chr5_4:40608013-40608032 Msa0850800:CDS 45.0%
!! AGGTTGAGAGCACCTTTGAA+AGG - chr5_4:40608077-40608096 None:intergenic 45.0%
!! TATGGATTTGCTGAGGAGCT+TGG + chr5_4:40608158-40608177 Msa0850800:CDS 45.0%
CTGCGTCAGACATATCACAA+TGG - chr5_4:40608208-40608227 None:intergenic 45.0%
GCTGAAGCAAAACTGGATAG+TGG + chr5_4:40608914-40608933 Msa0850800:CDS 45.0%
GGAGCTACATGGTGATATTC+AGG + chr5_4:40608991-40609010 Msa0850800:CDS 45.0%
!! ATCCCAAAGAGCACCATCTA+AGG - chr5_4:40609062-40609081 None:intergenic 45.0%
TTTGGATACCCCCTGTTAAC+TGG + chr5_4:40609208-40609227 Msa0850800:intron 45.0%
CTCTACAAAAAGAGTGGGCA+AGG - chr5_4:40609628-40609647 None:intergenic 45.0%
GAGAGATTTGGGTAGACAGA+AGG - chr5_4:40609702-40609721 None:intergenic 45.0%
TGTTCAGTCCTGCAACACAT+TGG + chr5_4:40609784-40609803 Msa0850800:intron 45.0%
! GTGCTGGATCCTTTTAAGCT+AGG - chr5_4:40609819-40609838 None:intergenic 45.0%
AAGGATCCAGCACACTTTGT+TGG + chr5_4:40609826-40609845 Msa0850800:intron 45.0%
AGGATCCAGCACACTTTGTT+GGG + chr5_4:40609827-40609846 Msa0850800:intron 45.0%
CTACTGAATCGGTGACCTAA+GGG - chr5_4:40610197-40610216 None:intergenic 45.0%
TCTACTGAATCGGTGACCTA+AGG - chr5_4:40610198-40610217 None:intergenic 45.0%
AAGTTCACTTGGCAGTAGAC+GGG + chr5_4:40610252-40610271 Msa0850800:intron 45.0%
! ATGACTTGGCAGTCTGATGA+CGG + chr5_4:40610289-40610308 Msa0850800:intron 45.0%
!! CAGCTTTTTCTTATGCCCGA+TGG - chr5_4:40610404-40610423 None:intergenic 45.0%
CGGGCATAAGAAAAAGCTGA+AGG + chr5_4:40610405-40610424 Msa0850800:CDS 45.0%
!! TTCAGATTTCGGACTTGGTG+GGG - chr5_4:40610603-40610622 None:intergenic 45.0%
! CTTCAGATTTCGGACTTGGT+GGG - chr5_4:40610604-40610623 None:intergenic 45.0%
AAACATTCCTAATGGGGGAG+GGG + chr5_4:40611376-40611395 Msa0850800:intron 45.0%
! GGTTTGGGATTTGGTTCCTA+TGG + chr5_4:40611397-40611416 Msa0850800:intron 45.0%
GTCTAGATCGTTACTCGAGT+AGG + chr5_4:40611521-40611540 Msa0850800:intron 45.0%
GGGTGACAATTGTAGCCAAA+TGG + chr5_4:40611542-40611561 Msa0850800:intron 45.0%
TGCGGAATTCCTCTGTCAAA+CGG - chr5_4:40611855-40611874 None:intergenic 45.0%
CAGGTCCATAGAGGACAAAT+TGG + chr5_4:40611891-40611910 Msa0850800:CDS 45.0%
GTCCATAGAGGACAAATTGG+AGG + chr5_4:40611894-40611913 Msa0850800:CDS 45.0%
! GGAGGTATGCCTGACTATTA+TGG + chr5_4:40611912-40611931 Msa0850800:intron 45.0%
!!! TTAAAGTTTTTTTTTTTTTT+TGG + chr5_4:40608863-40608882 Msa0850800:intron 5.0%
!! AGAAAAAATAAATATAAATA+TGG + chr5_4:40610764-40610783 Msa0850800:intron 5.0%
AGAAGAAGCAGCTTCATCGG+TGG - chr5_4:40605450-40605469 None:intergenic 50.0%
CATTGATGCGTGTCTGACAC+CGG + chr5_4:40605903-40605922 Msa0850800:intron 50.0%
! TGATGAGCGCATGTACTGGT+AGG + chr5_4:40606817-40606836 Msa0850800:intron 50.0%
! GATGAGCGCATGTACTGGTA+GGG + chr5_4:40606818-40606837 Msa0850800:intron 50.0%
CGAGGCCCAAATTATCTGCA+TGG + chr5_4:40607059-40607078 Msa0850800:CDS 50.0%
!! CACCCAGATTTTGACCACGT+AGG - chr5_4:40607146-40607165 None:intergenic 50.0%
CTACGTGGTCAAAATCTGGG+TGG + chr5_4:40607144-40607163 Msa0850800:CDS 50.0%
! TCAATGGCACTGGAGCAAAG+GGG + chr5_4:40607484-40607503 Msa0850800:CDS 50.0%
AACAGAAAGCAGGGGATGCA+AGG - chr5_4:40607747-40607766 None:intergenic 50.0%
ATGAACTCCGCACAATGACG+CGG - chr5_4:40608023-40608042 None:intergenic 50.0%
!! GATTTGCTGAGGAGCTTGGA+CGG + chr5_4:40608162-40608181 Msa0850800:CDS 50.0%
! ATTTGCTGAGGAGCTTGGAC+GGG + chr5_4:40608163-40608182 Msa0850800:CDS 50.0%
AGCACCTTGAGCAAGACAAG+AGG + chr5_4:40608969-40608988 Msa0850800:CDS 50.0%
GCACCTTGAGCAAGACAAGA+GGG + chr5_4:40608970-40608989 Msa0850800:CDS 50.0%
CAAGACAAGAGGGAGCTACA+TGG + chr5_4:40608980-40608999 Msa0850800:CDS 50.0%
! GTTGGTGGGGATTCCTTAGA+TGG + chr5_4:40609046-40609065 Msa0850800:CDS 50.0%
TGTCCATTGCTCTCCTGTAG+AGG + chr5_4:40609150-40609169 Msa0850800:CDS 50.0%
!! ATGAAGGTATCCTGCAGTGC+TGG + chr5_4:40609547-40609566 Msa0850800:intron 50.0%
ATCGCATTGCCTATTGCCTG+CGG + chr5_4:40609587-40609606 Msa0850800:intron 50.0%
GTAGAAAGAATCAACGCCGC+AGG - chr5_4:40609606-40609625 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr5_4:40609657-40609676 None:intergenic 50.0%
GTTGCAGGACTGAACAACCA+AGG - chr5_4:40609780-40609799 None:intergenic 50.0%
GGATCCAGCACACTTTGTTG+GGG + chr5_4:40609828-40609847 Msa0850800:intron 50.0%
GATCCAGCACACTTTGTTGG+GGG + chr5_4:40609829-40609848 Msa0850800:intron 50.0%
TTTCCCCCAACAAAGTGTGC+TGG - chr5_4:40609835-40609854 None:intergenic 50.0%
CATGCCTCGAATGATCAAGC+TGG + chr5_4:40610042-40610061 Msa0850800:intron 50.0%
AGTTCACTTGGCAGTAGACG+GGG + chr5_4:40610253-40610272 Msa0850800:intron 50.0%
!! TCAGATTTCGGACTTGGTGG+GGG - chr5_4:40610602-40610621 None:intergenic 50.0%
CCTTCAGATTTCGGACTTGG+TGG - chr5_4:40610605-40610624 None:intergenic 50.0%
CCACCAAGTCCGAAATCTGA+AGG + chr5_4:40610602-40610621 Msa0850800:CDS 50.0%
TTAACAGGGCTGGGTTATGC+TGG - chr5_4:40611203-40611222 None:intergenic 50.0%
GGAACACACTTAACAGGGCT+GGG - chr5_4:40611212-40611231 None:intergenic 50.0%
AGGAACACACTTAACAGGGC+TGG - chr5_4:40611213-40611232 None:intergenic 50.0%
TGAGTGCTTCCGTTTGACAG+AGG + chr5_4:40611843-40611862 Msa0850800:CDS 50.0%
ACTCAGAACAAACGCGGGAG+CGG + chr5_4:40605379-40605398 Msa0850800:CDS 55.0%
TTGCAGTTGCCACAGCAGAC+AGG - chr5_4:40606207-40606226 None:intergenic 55.0%
CACGGCAACAGAGGAGACAA+AGG - chr5_4:40606980-40606999 None:intergenic 55.0%
AACGAAGCTCACGGCAACAG+AGG - chr5_4:40606989-40607008 None:intergenic 55.0%
TGTTGCCGTGAGCTTCGTTG+TGG + chr5_4:40606990-40607009 Msa0850800:CDS 55.0%
GTTGCCGTGAGCTTCGTTGT+GGG + chr5_4:40606991-40607010 Msa0850800:CDS 55.0%
CTTCGTTGTGGGCAGCTTCT+AGG + chr5_4:40607002-40607021 Msa0850800:CDS 55.0%
GTTGTGGGCAGCTTCTAGGT+GGG + chr5_4:40607006-40607025 Msa0850800:CDS 55.0%
TTGTGGGCAGCTTCTAGGTG+GGG + chr5_4:40607007-40607026 Msa0850800:CDS 55.0%
CCACGTAGGAATCTCAGGCT+GGG - chr5_4:40607132-40607151 None:intergenic 55.0%
ACCACGTAGGAATCTCAGGC+TGG - chr5_4:40607133-40607152 None:intergenic 55.0%
! GGGTGGCATGCTGATAGTGA+CGG + chr5_4:40607161-40607180 Msa0850800:CDS 55.0%
CATCAGGCAGCTTCACAGCA+AGG - chr5_4:40608097-40608116 None:intergenic 55.0%
TTTGCTGAGGAGCTTGGACG+GGG + chr5_4:40608164-40608183 Msa0850800:CDS 55.0%
GCTCCCTCTTGTCTTGCTCA+AGG - chr5_4:40608976-40608995 None:intergenic 55.0%
AGAGGACGTACCTGCATTGC+AGG + chr5_4:40609093-40609112 Msa0850800:CDS 55.0%
CCTCCTCTACAGGAGAGCAA+TGG - chr5_4:40609156-40609175 None:intergenic 55.0%
CCATTGCTCTCCTGTAGAGG+AGG + chr5_4:40609153-40609172 Msa0850800:CDS 55.0%
!! GTATCCTGCAGTGCTGGTCT+GGG + chr5_4:40609553-40609572 Msa0850800:intron 55.0%
! GTGCTGGTCTGGGTTTGTCT+AGG + chr5_4:40609563-40609582 Msa0850800:intron 55.0%
GAATCAACGCCGCAGGCAAT+AGG - chr5_4:40609599-40609618 None:intergenic 55.0%
! GAGAGAGAGAGAGAGGCACA+AGG - chr5_4:40609652-40609671 None:intergenic 55.0%
GAATCGGTGACCTAAGGGAC+TGG - chr5_4:40610192-40610211 None:intergenic 55.0%
TTCCTAATGGGGGAGGGGTT+TGG + chr5_4:40611381-40611400 Msa0850800:intron 55.0%
TCCTAATGGGGGAGGGGTTT+GGG + chr5_4:40611382-40611401 Msa0850800:intron 55.0%
GAGGCATGTCCTGTCTGCTG+TGG + chr5_4:40606195-40606214 Msa0850800:CDS 60.0%
GCTGCCCACAACGAAGCTCA+CGG - chr5_4:40606998-40607017 None:intergenic 60.0%
CGTTGTGGGCAGCTTCTAGG+TGG + chr5_4:40607005-40607024 Msa0850800:CDS 60.0%
CCCAGCCTGAGATTCCTACG+TGG + chr5_4:40607129-40607148 Msa0850800:CDS 60.0%
GCTGGGAGCCGTTTGTCATG+TGG + chr5_4:40607552-40607571 Msa0850800:CDS 60.0%
GGAGCTTGGACGGGGTGATT+CGG + chr5_4:40608172-40608191 Msa0850800:CDS 60.0%
!! GACGGGGTGATTCGGTGACT+AGG + chr5_4:40608180-40608199 Msa0850800:CDS 60.0%
!! GGTATCCTGCAGTGCTGGTC+TGG + chr5_4:40609552-40609571 Msa0850800:intron 60.0%
CAAACCCAGACCAGCACTGC+AGG - chr5_4:40609560-40609579 None:intergenic 60.0%
TCCCAAACCCCTCCCCCATT+AGG - chr5_4:40611386-40611405 None:intergenic 60.0%
! TGGGGGAGGGGTTTGGGATT+TGG + chr5_4:40611388-40611407 Msa0850800:intron 60.0%
CAGAACAAACGCGGGAGCGG+TGG + chr5_4:40605382-40605401 Msa0850800:CDS 65.0%
AACAAACGCGGGAGCGGTGG+CGG + chr5_4:40605385-40605404 Msa0850800:CDS 65.0%
TCAGGCTGGGCACCAGCATC+AGG - chr5_4:40607119-40607138 None:intergenic 65.0%
! ACTTGGTGGGGGCAACCAGC+TGG - chr5_4:40610591-40610610 None:intergenic 65.0%
! AAACGCGGGAGCGGTGGCGG+AGG + chr5_4:40605388-40605407 Msa0850800:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 40605156 40612387 40605156 ID=Msa0850800;Name=Msa0850800
chr5_4 mRNA 40605156 40612387 40605156 ID=Msa0850800-mRNA-1;Parent=Msa0850800;Name=Msa0850800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=131|0.09|0.08|1|1|1|12|0|825
chr5_4 exon 40605156 40605643 40605156 ID=Msa0850800-mRNA-1:exon:12778;Parent=Msa0850800-mRNA-1
chr5_4 exon 40605971 40606086 40605971 ID=Msa0850800-mRNA-1:exon:12779;Parent=Msa0850800-mRNA-1
chr5_4 exon 40606164 40606263 40606164 ID=Msa0850800-mRNA-1:exon:12780;Parent=Msa0850800-mRNA-1
chr5_4 exon 40606357 40606498 40606357 ID=Msa0850800-mRNA-1:exon:12781;Parent=Msa0850800-mRNA-1
chr5_4 exon 40606771 40606834 40606771 ID=Msa0850800-mRNA-1:exon:12782;Parent=Msa0850800-mRNA-1
chr5_4 exon 40606917 40607655 40606917 ID=Msa0850800-mRNA-1:exon:12783;Parent=Msa0850800-mRNA-1
chr5_4 exon 40607897 40608226 40607897 ID=Msa0850800-mRNA-1:exon:12784;Parent=Msa0850800-mRNA-1
chr5_4 exon 40608893 40609174 40608893 ID=Msa0850800-mRNA-1:exon:12785;Parent=Msa0850800-mRNA-1
chr5_4 exon 40610364 40610436 40610364 ID=Msa0850800-mRNA-1:exon:12786;Parent=Msa0850800-mRNA-1
chr5_4 exon 40610538 40610623 40610538 ID=Msa0850800-mRNA-1:exon:12787;Parent=Msa0850800-mRNA-1
chr5_4 exon 40611796 40611915 40611796 ID=Msa0850800-mRNA-1:exon:12788;Parent=Msa0850800-mRNA-1
chr5_4 exon 40612319 40612387 40612319 ID=Msa0850800-mRNA-1:exon:12789;Parent=Msa0850800-mRNA-1
chr5_4 five_prime_UTR 40605156 40605286 40605156 ID=Msa0850800-mRNA-1:five_prime_utr;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40605287 40605643 40605287 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40605971 40606086 40605971 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40606164 40606263 40606164 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40606357 40606498 40606357 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40606771 40606834 40606771 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40606917 40607655 40606917 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40607897 40608226 40607897 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40608893 40609174 40608893 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40610364 40610436 40610364 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40610538 40610623 40610538 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40611796 40611915 40611796 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
chr5_4 CDS 40612319 40612387 40612319 ID=Msa0850800-mRNA-1:cds;Parent=Msa0850800-mRNA-1
Gene Sequence

>Msa0850800

ATGGCGTTTGCGAGGGAACAAGAAGACAACAACAACACATTCACGACGGGGATTAACAAGCCTCCTATCCATTATGTCTATTCTAGAAAGAGACTCAGAACAAACGCGGGAGCGGTGGCGGAGGAGTTAGCTAAGAACGAAGAACAACAACAACAACAAACCACCGATGAAGCTGCTTCTTCTTCCGTTGCTGTTCGAAAGAGTCAACGGATAAGAAGAACAACAATAAATGCTCCCGTCTTGGTAGACAAGAAGAAAAAGAAGAAGAAGAATCTTGGTGATGGTGATGGTGCTGAGAAAACCAACACAATTTCTCCGAAGAAACCCGGAAAAAGAAAACAGACTCCTCACAATAAGTGGATTGAAGAGGAGTCCTTAATGTGTCATCAATGTCAAAGAAATGACAAGGGCAGGGTTGTCAGATGCACCAAATGCAAACGGAAAAGATATTGTGTAGACTGTATAAAAAATTGGTATCCTCGATTGAAAGAGGAACAATTTGCTGAGGCATGTCCTGTCTGCTGTGGCAACTGCAATTGCAAAGCTTGTTTGAAGTCACGGAAACTTATCGATTCAATTAAAGAAAAGGAGGAGGAAACCAACGATCATCATCAGGTTGAGCGCTCCAAGTATATGCTCAAAGCTCTTCTTCCACATTTAATACGATTGGATCAAGAACAAATGGCCGAGAAGGAAATAGAAGCCAAGTTACAAGGTCTCTCACTCTCTGAGCTAAAAATTAAAAAATCAAATCCCCATAATGATGAGCGCATGTACTGTGACAACTGCAAAACATCAATATTTGACTACCATAGAAGCTGCACAGAATGCTCTTTTGACCTTTGTCTCCTCTGTTGCCGTGAGCTTCGTTGTGGGCAGCTTCTAGGTGGGGCAGATCCATTTGATTTTGAGTTTATCTTCCGAGGCCCAAATTATCTGCATGGTGAAGTTGCGAAGAAAGTAACCAGATACAAAGCACCTGATGCTGGTGCCCAGCCTGAGATTCCTACGTGGTCAAAATCTGGGTGGCATGCTGATAGTGACGGCAATATTCCCTGTCCAAAACCTGAGATTAAATGTGATCACGGTTACCTTGAACTGAAAAGCGTATTTTCGCCAGAATGCATCTCCGAGTTAGTATGTAAAGCAAAGGAACTTGCAGATTCAATGAAACTTCAAGATGCAGAGGTGACTCTTGATAATAGCTGCTCTTGTTTGAATCCTGTTAGGAATAGAGATGATATACACAATAACACAAGGGAAGCAGCTCTTTGCAAAGAATCCAGGGGCAACTTTTTGTACTGTCCTAGGGCTGTAGATCTTCATCACGATGATGTAGGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAGCCGTTTGTCATGTGGCGTGCATTTCGTCAAATAAACAAGAACAAGAACAAGTCACTTTTGGATGTTAAGGCACTTGATTGCTTAGATTGGTGCGAGATAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATTGTCCCAAGGATAATCATAATTGGCCTCAAGTATTGAAATTGAAAGATTGGCCTCCTTCTAAACTATTTGAAGAAAGTTTACCGCGTCATTGTGCGGAGTTCATATCTTCCTTGCCATTTAAAGAATATACAAATCCTTTCAAAGGTGCTCTCAACCTTGCTGTGAAGCTGCCTGATGAAGTTCTAAAGCCAGACATGGGACCAAAAACATATATTGCGTATGGATTTGCTGAGGAGCTTGGACGGGGTGATTCGGTGACTAGGCTCCATTGTGATATGTCTGACGCAGTAAATGTGTTGACTCATATTGCTGAAGCAAAACTGGATAGTGGGAGTATTGACGCAATTAAGAAATTGAAACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATATTCAGGATGGAGAGACCACTGTTGAAAATAGTTTGTTGGTTGGTGGGGATTCCTTAGATGGTGCTCTTTGGGATATTTTTCGGAGAGAGGACGTACCTGCATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTCTCCTGTAGAGGAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTAACCATCGGGCATAAGAAAAAGCTGAAGGAAGAGTATGGTATTGAGCCTTGGACTTTTGTTCAGAAGCTTGGAGATGCAATTTTCATTCCAGCTGGTTGCCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAGGTCCATAGAGGACAAATTGGAGGTGAAGAAAATGATCGTATATGCTATGATTGATGTGGTCAAAAAGTTGGAGAAAGCAAGGAGCCAATGA
Protein sequence

>Msa0850800

MAFAREQEDNNNTFTTGINKPPIHYVYSRKRLRTNAGAVAEELAKNEEQQQQQTTDEAASSSVAVRKSQRIRRTTINAPVLVDKKKKKKKNLGDGDGAEKTNTISPKKPGKRKQTPHNKWIEEESLMCHQCQRNDKGRVVRCTKCKRKRYCVDCIKNWYPRLKEEQFAEACPVCCGNCNCKACLKSRKLIDSIKEKEEETNDHHQVERSKYMLKALLPHLIRLDQEQMAEKEIEAKLQGLSLSELKIKKSNPHNDERMYCDNCKTSIFDYHRSCTECSFDLCLLCCRELRCGQLLGGADPFDFEFIFRGPNYLHGEVAKKVTRYKAPDAGAQPEIPTWSKSGWHADSDGNIPCPKPEIKCDHGYLELKSVFSPECISELVCKAKELADSMKLQDAEVTLDNSCSCLNPVRNRDDIHNNTREAALCKESRGNFLYCPRAVDLHHDDVGHFQWHWSKGEPVIVSNVLECTSGLSWEPFVMWRAFRQINKNKNKSLLDVKALDCLDWCEIDINVHQFFTGYTNCPKDNHNWPQVLKLKDWPPSKLFEESLPRHCAEFISSLPFKEYTNPFKGALNLAVKLPDEVLKPDMGPKTYIAYGFAEELGRGDSVTRLHCDMSDAVNVLTHIAEAKLDSGSIDAIKKLKQKHLEQDKRELHGDIQDGETTVENSLLVGGDSLDGALWDIFRREDVPALQEYLKKHFREFRHVHCSPVEEVIHPIHDQTFYLTIGHKKKLKEEYGIEPWTFVQKLGDAIFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSIEDKLEVKKMIVYAMIDVVKKLEKARSQ*