Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850930 | XP_003600003.2 | 53.527 | 241 | 79 | 5 | 102 | 311 | 3 | 241 | 9.87e-74 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850930 | sp|Q9LT81|C3H39_ARATH | 38.983 | 118 | 48 | 3 | 120 | 213 | 91 | 208 | 2.53e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850930 | G7J1X0 | 53.527 | 241 | 79 | 5 | 102 | 311 | 3 | 241 | 4.71e-74 | 237 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0850930 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850930 | MtrunA17_Chr3g0098251 | 64.706 | 119 | 35 | 2 | 102 | 215 | 3 | 119 | 3.25e-49 | 162 |
| Msa0850930 | MtrunA17_Chr4g0063401 | 52.288 | 153 | 46 | 5 | 88 | 213 | 17 | 169 | 9.60e-40 | 140 |
| Msa0850930 | MtrunA17_Chr4g0063361 | 43.750 | 176 | 61 | 7 | 76 | 218 | 9 | 179 | 1.89e-32 | 120 |
| Msa0850930 | MtrunA17_Chr4g0063391 | 46.043 | 139 | 61 | 4 | 88 | 213 | 3 | 140 | 7.41e-28 | 107 |
| Msa0850930 | MtrunA17_Chr4g0063371 | 34.599 | 237 | 121 | 8 | 87 | 297 | 2 | 230 | 2.61e-27 | 106 |
| Msa0850930 | MtrunA17_Chr8g0360671 | 57.576 | 66 | 21 | 2 | 155 | 215 | 41 | 104 | 1.01e-17 | 79.0 |
| Msa0850930 | MtrunA17_Chr4g0063411 | 58.228 | 79 | 33 | 0 | 220 | 298 | 12 | 90 | 1.84e-15 | 70.9 |
| Msa0850930 | MtrunA17_Chr8g0366501 | 35.345 | 116 | 54 | 2 | 127 | 221 | 86 | 201 | 1.08e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850930 | AT3G19360.1 | 38.983 | 118 | 48 | 3 | 120 | 213 | 91 | 208 | 2.58e-19 | 87.8 |
| Msa0850930 | AT3G19360.2 | 38.983 | 118 | 48 | 3 | 120 | 213 | 91 | 208 | 2.58e-19 | 87.8 |
| Msa0850930 | AT1G32360.1 | 35.537 | 121 | 52 | 2 | 127 | 221 | 85 | 205 | 8.52e-13 | 68.9 |
Find 67 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACCATTGTAATACTTCT+TGG | 0.163111 | 5_4:-40756444 | None:intergenic |
| AAGAAGATCAACACTATTTA+TGG | 0.191666 | 5_4:+40758968 | Msa0850930:CDS |
| TCCTCTGCACTTGGCAAGTT+TGG | 0.195123 | 5_4:-40759022 | None:intergenic |
| CTTGTGAAATCTTGGTTTCC+TGG | 0.246188 | 5_4:-40755322 | None:intergenic |
| GTTCCTGGTGGAGGCATTAA+AGG | 0.271871 | 5_4:+40758776 | Msa0850930:CDS |
| CAAAAGGAGTTTGAGAAGTT+TGG | 0.274477 | 5_4:-40755352 | None:intergenic |
| ATGCCTATTTCTTTGTTTGA+TGG | 0.278931 | 5_4:-40756219 | None:intergenic |
| TCTCCATCAAACAAAGAAAT+AGG | 0.289126 | 5_4:+40756216 | Msa0850930:CDS |
| AACAGATCTTGTTCCCATTA+GGG | 0.307940 | 5_4:+40755424 | Msa0850930:CDS |
| TAACAGATCTTGTTCCCATT+AGG | 0.329042 | 5_4:+40755423 | Msa0850930:CDS |
| GTATAAACTGGTAAGGCATT+TGG | 0.331475 | 5_4:-40758851 | None:intergenic |
| ATTCTTACCCTCTTGTTCAT+TGG | 0.332135 | 5_4:-40756156 | None:intergenic |
| ATGTTATCGTTGCGGTTGTC+TGG | 0.349324 | 5_4:-40756114 | None:intergenic |
| ATTTGTCTTAAGTTTAGATT+TGG | 0.368220 | 5_4:+40756261 | Msa0850930:CDS |
| CTCTTGTTCATTGGAAATTG+AGG | 0.372663 | 5_4:-40756147 | None:intergenic |
| GTCAGATGCTTGTGAAATCT+TGG | 0.384268 | 5_4:-40755330 | None:intergenic |
| ATGGCTTGAAACAACCCTAA+TGG | 0.387771 | 5_4:-40755438 | None:intergenic |
| ATAAGGCAGCCACCGTGAAT+TGG | 0.397681 | 5_4:+40756333 | Msa0850930:intron |
| TGGCTTGAAACAACCCTAAT+GGG | 0.399086 | 5_4:-40755437 | None:intergenic |
| GGTAAGGCATTTGGTAAAGT+TGG | 0.401328 | 5_4:-40758842 | None:intergenic |
| GGTGCATCATTTGTATAAAC+TGG | 0.403031 | 5_4:-40758863 | None:intergenic |
| AGTTACAACTTACAAGTTCC+TGG | 0.407166 | 5_4:+40758761 | Msa0850930:CDS |
| TTCATTACATGAGAAGGCTT+TGG | 0.418477 | 5_4:-40755480 | None:intergenic |
| CTCAATTTCCAATGAACAAG+AGG | 0.448816 | 5_4:+40756148 | Msa0850930:CDS |
| AATGGTGAGGAATGTCCTTA+TGG | 0.456697 | 5_4:+40756458 | Msa0850930:CDS |
| TTTAATATCCACCAAAGTAA+TGG | 0.458861 | 5_4:-40758944 | None:intergenic |
| TCTTGTTCATTGGAAATTGA+GGG | 0.459679 | 5_4:-40756146 | None:intergenic |
| TCAACACTATTTATGGCGAT+TGG | 0.466072 | 5_4:+40758975 | Msa0850930:CDS |
| ATTTCTTTGTTTGATGGAGA+AGG | 0.470948 | 5_4:-40756213 | None:intergenic |
| AAACTACACTTGTCACCATA+AGG | 0.480255 | 5_4:-40756473 | None:intergenic |
| TCTAGCTATGGCAAAGGAAG+AGG | 0.489076 | 5_4:+40758904 | Msa0850930:CDS |
| CTAAGAAGCAGCCATTACTT+TGG | 0.492038 | 5_4:+40758933 | Msa0850930:CDS |
| AACTAGCTCCTTCCAATTCA+CGG | 0.494125 | 5_4:-40756345 | None:intergenic |
| AGAAGCAGCCATTACTTTGG+TGG | 0.501596 | 5_4:+40758936 | Msa0850930:CDS |
| TTTCTTTGTTTGATGGAGAA+GGG | 0.512285 | 5_4:-40756212 | None:intergenic |
| ACTCAGGTCTCCTCTGCACT+TGG | 0.516894 | 5_4:-40759031 | None:intergenic |
| GCCATGTTCCCACCAAGAAA+AGG | 0.519256 | 5_4:+40755456 | Msa0850930:CDS |
| AACTTACAAGTTCCTGGTGG+AGG | 0.533441 | 5_4:+40758767 | Msa0850930:CDS |
| ATCATTTGTATAAACTGGTA+AGG | 0.538189 | 5_4:-40758858 | None:intergenic |
| TAGACTTGCTAGGATGTTGG+CGG | 0.538885 | 5_4:-40758885 | None:intergenic |
| AGATTTGGTAATTGTTCGAA+AGG | 0.541030 | 5_4:+40756276 | Msa0850930:CDS |
| AGAGAGTTCATTACATGAGA+AGG | 0.541237 | 5_4:-40755486 | None:intergenic |
| TCAGAGAATCATTCACAAGA+TGG | 0.544439 | 5_4:+40756415 | Msa0850930:CDS |
| TTGCCATAGCTAGACTTGCT+AGG | 0.545176 | 5_4:-40758895 | None:intergenic |
| TATGGCAAAGGAAGAGGAGA+AGG | 0.552115 | 5_4:+40758910 | Msa0850930:CDS |
| GGCAAGTTTGGAAGAACAAG+AGG | 0.556271 | 5_4:-40759010 | None:intergenic |
| AGCAAAAGACGGATCATCAA+AGG | 0.563192 | 5_4:+40755397 | Msa0850930:CDS |
| TCCAAACTTGCCAAGTGCAG+AGG | 0.568928 | 5_4:+40759021 | Msa0850930:CDS |
| AGAAGGGCGTATGAATGCAT+TGG | 0.569393 | 5_4:-40756196 | None:intergenic |
| CAACGAGGAACGACTACAGT+TGG | 0.570638 | 5_4:+40756376 | Msa0850930:CDS |
| AGCTAGACTTGCTAGGATGT+TGG | 0.571351 | 5_4:-40758888 | None:intergenic |
| TCACTTCAATGTTATCGTTG+CGG | 0.571554 | 5_4:-40756122 | None:intergenic |
| CATCCTAGCAAGTCTAGCTA+TGG | 0.572070 | 5_4:+40758892 | Msa0850930:CDS |
| TGTAGTCGTTCCTCGTTGCG+AGG | 0.572404 | 5_4:-40756371 | None:intergenic |
| GGTGTAGGAAGCGACACAAA+AGG | 0.579241 | 5_4:-40755368 | None:intergenic |
| TCACCTTTAATGCCTCCACC+AGG | 0.591568 | 5_4:-40758779 | None:intergenic |
| GGCAGCCACCGTGAATTGGA+AGG | 0.607378 | 5_4:+40756337 | Msa0850930:intron |
| AGACTTGCTAGGATGTTGGC+GGG | 0.611236 | 5_4:-40758884 | None:intergenic |
| GGTGGAGGCATTAAAGGTGA+AGG | 0.619947 | 5_4:+40758782 | Msa0850930:CDS |
| TCAATTTCCAATGAACAAGA+GGG | 0.637810 | 5_4:+40756149 | Msa0850930:CDS |
| AGCAAGTCTAGCTATGGCAA+AGG | 0.643344 | 5_4:+40758898 | Msa0850930:CDS |
| CAAGAAGTATTACAATGGTG+AGG | 0.644651 | 5_4:+40756445 | Msa0850930:CDS |
| CTCTCCAAGAAGTATTACAA+TGG | 0.653740 | 5_4:+40756440 | Msa0850930:CDS |
| ACACCATCCAAAGCAAAAGA+CGG | 0.654937 | 5_4:+40755386 | Msa0850930:CDS |
| TACAACTTACAAGTTCCTGG+TGG | 0.700883 | 5_4:+40758764 | Msa0850930:CDS |
| GCTAGTTAGTCCTCGCAACG+AGG | 0.721526 | 5_4:+40756361 | Msa0850930:CDS |
| TAGCTCCTTCCAATTCACGG+TGG | 0.783407 | 5_4:-40756342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr5_4:40757388-40757407 | Msa0850930:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr5_4:40757388-40757407 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr5_4:40757389-40757408 | Msa0850930:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr5_4:40757388-40757407 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr5_4:40757389-40757408 | None:intergenic | 0.0% |
| !! | ATACAAAATATTAAAAACAT+CGG | - | chr5_4:40756998-40757017 | None:intergenic | 10.0% |
| !! | TAGATTAAATTTGAATTAAA+AGG | - | chr5_4:40758202-40758221 | None:intergenic | 10.0% |
| !! | TTAATTCAAATTTAATCTAA+TGG | + | chr5_4:40758203-40758222 | Msa0850930:intron | 10.0% |
| !! | CAATAAAAAAAAAAATACCA+AGG | - | chr5_4:40755902-40755921 | None:intergenic | 15.0% |
| !! | TTGTATTAAATAGGATATTA+TGG | + | chr5_4:40757012-40757031 | Msa0850930:intron | 15.0% |
| !! | TAAATTTGAATTAAAAGGTA+TGG | - | chr5_4:40758197-40758216 | None:intergenic | 15.0% |
| !!! | TGCAAAATTTTAATGGTAAT+GGG | - | chr5_4:40755815-40755834 | None:intergenic | 20.0% |
| !!! | ATGCAAAATTTTAATGGTAA+TGG | - | chr5_4:40755816-40755835 | None:intergenic | 20.0% |
| !!! | AGAGAAATGCAAAATTTTAA+TGG | - | chr5_4:40755822-40755841 | None:intergenic | 20.0% |
| !! | ATTTGTCTTAAGTTTAGATT+TGG | + | chr5_4:40756261-40756280 | Msa0850930:CDS | 20.0% |
| !! | TTAATATGATCAACTACATT+AGG | - | chr5_4:40756571-40756590 | None:intergenic | 20.0% |
| !! | ATGTAGTTGATCATATTAAA+TGG | + | chr5_4:40756572-40756591 | Msa0850930:intron | 20.0% |
| !!! | ATTTTTTGCTATTTAACAAG+AGG | + | chr5_4:40757054-40757073 | Msa0850930:intron | 20.0% |
| !!! | TTTTTTGCTATTTAACAAGA+GGG | + | chr5_4:40757055-40757074 | Msa0850930:intron | 20.0% |
| !! | CAAAAATAAAAAGAAGAAAC+AGG | - | chr5_4:40757127-40757146 | None:intergenic | 20.0% |
| !!! | AATTTTTGCTTCTAATTTAG+AGG | + | chr5_4:40757251-40757270 | Msa0850930:intron | 20.0% |
| !!! | AATGTCTTTGATTGATTTTA+AGG | - | chr5_4:40757701-40757720 | None:intergenic | 20.0% |
| !!! | AAGTCATGATTTTTAATGAA+GGG | - | chr5_4:40757946-40757965 | None:intergenic | 20.0% |
| !!! | AAAGTCATGATTTTTAATGA+AGG | - | chr5_4:40757947-40757966 | None:intergenic | 20.0% |
| !! | ACAAGTTATAACTAAAAAGT+AGG | - | chr5_4:40758383-40758402 | None:intergenic | 20.0% |
| !!! | ACCTTCTAAAAAAAATAAGT+GGG | - | chr5_4:40758474-40758493 | None:intergenic | 20.0% |
| ! | TCCTTCTAATTTCAATTTCT+TGG | + | chr5_4:40755690-40755709 | Msa0850930:intron | 25.0% |
| ! | ACCAAGAAATTGAAATTAGA+AGG | - | chr5_4:40755694-40755713 | None:intergenic | 25.0% |
| ! | GCATTTGTAGTTTATACAAA+TGG | + | chr5_4:40755852-40755871 | Msa0850930:intron | 25.0% |
| ! | ATCAAGAATCAGAGAAAATT+TGG | - | chr5_4:40755999-40756018 | None:intergenic | 25.0% |
| ! | AAAGTCGTAACTACTAATAA+AGG | - | chr5_4:40756093-40756112 | None:intergenic | 25.0% |
| !! | AATTTTGTAACTATGCTCTT+GGG | + | chr5_4:40756301-40756320 | Msa0850930:CDS | 25.0% |
| ! | ATAAAAAGAAGAAACAGGAT+TGG | - | chr5_4:40757122-40757141 | None:intergenic | 25.0% |
| !!! | CTTCTTTTTATTTTTGCTGA+TGG | + | chr5_4:40757131-40757150 | Msa0850930:intron | 25.0% |
| !! | ATGTTAAGAATTTTTGCTGA+TGG | + | chr5_4:40757285-40757304 | Msa0850930:intron | 25.0% |
| !!! | TCTTTGATTGATTTTAAGGT+AGG | - | chr5_4:40757697-40757716 | None:intergenic | 25.0% |
| !! | CTGAAAAAATAAAGCTTTGT+GGG | - | chr5_4:40757771-40757790 | None:intergenic | 25.0% |
| ! | TCTGAAAAAATAAAGCTTTG+TGG | - | chr5_4:40757772-40757791 | None:intergenic | 25.0% |
| !!! | ATTTTTTCAGATCCATGTAT+TGG | + | chr5_4:40757781-40757800 | Msa0850930:intron | 25.0% |
| !!! | TGATAATGGAAATCTTTGTT+TGG | - | chr5_4:40758021-40758040 | None:intergenic | 25.0% |
| ! | ACAAAAAAACGGAAGATAAA+AGG | + | chr5_4:40758086-40758105 | Msa0850930:intron | 25.0% |
| !!! | ACACCTTCTAAAATATAAGT+GGG | + | chr5_4:40758409-40758428 | Msa0850930:intron | 25.0% |
| !!! | ACCCACTTATTTTTTTTAGA+AGG | + | chr5_4:40758470-40758489 | Msa0850930:intron | 25.0% |
| !! | CACCTTCTAAAAAAAATAAG+TGG | - | chr5_4:40758475-40758494 | None:intergenic | 25.0% |
| !! | TTTTAACAACATTCACCTTA+AGG | + | chr5_4:40758497-40758516 | Msa0850930:intron | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | - | chr5_4:40758515-40758534 | None:intergenic | 25.0% |
| !! | TATATATATAGGGGTTTGTT+AGG | - | chr5_4:40758589-40758608 | None:intergenic | 25.0% |
| ! | TTATAACAATCGAAACAGTT+TGG | + | chr5_4:40758686-40758705 | Msa0850930:intron | 25.0% |
| !! | AGCTTTTGTTGAATTTTCTA+TGG | - | chr5_4:40758816-40758835 | None:intergenic | 25.0% |
| ! | ATCATTTGTATAAACTGGTA+AGG | - | chr5_4:40758861-40758880 | None:intergenic | 25.0% |
| ! | TTTAATATCCACCAAAGTAA+TGG | - | chr5_4:40758947-40758966 | None:intergenic | 25.0% |
| ! | AAGAAGATCAACACTATTTA+TGG | + | chr5_4:40758968-40758987 | Msa0850930:CDS | 25.0% |
| ACCTACTAGAAAAACTGAAA+AGG | + | chr5_4:40755532-40755551 | Msa0850930:CDS | 30.0% | |
| ! | TTATGGATTAACATACAGAC+TGG | - | chr5_4:40755597-40755616 | None:intergenic | 30.0% |
| TATCCAAAATGAACCCTAAT+GGG | - | chr5_4:40755637-40755656 | None:intergenic | 30.0% | |
| TTATCCAAAATGAACCCTAA+TGG | - | chr5_4:40755638-40755657 | None:intergenic | 30.0% | |
| TCAATTTCTTGGTATGCAAA+TGG | + | chr5_4:40755701-40755720 | Msa0850930:intron | 30.0% | |
| CAATTTCTTGGTATGCAAAT+GGG | + | chr5_4:40755702-40755721 | Msa0850930:intron | 30.0% | |
| AATTTCTTGGTATGCAAATG+GGG | + | chr5_4:40755703-40755722 | Msa0850930:intron | 30.0% | |
| CAACATTCATTGTATCCAAT+TGG | + | chr5_4:40755952-40755971 | Msa0850930:intron | 30.0% | |
| GAATCAGAGAAAATTTGGAA+CGG | - | chr5_4:40755994-40756013 | None:intergenic | 30.0% | |
| TCTTGTTCATTGGAAATTGA+GGG | - | chr5_4:40756149-40756168 | None:intergenic | 30.0% | |
| TCAATTTCCAATGAACAAGA+GGG | + | chr5_4:40756149-40756168 | Msa0850930:CDS | 30.0% | |
| ! | TGCATTGGAATGATTGTTTT+CGG | - | chr5_4:40756184-40756203 | None:intergenic | 30.0% |
| ! | TTTCTTTGTTTGATGGAGAA+GGG | - | chr5_4:40756215-40756234 | None:intergenic | 30.0% |
| ! | ATTTCTTTGTTTGATGGAGA+AGG | - | chr5_4:40756216-40756235 | None:intergenic | 30.0% |
| TCTCCATCAAACAAAGAAAT+AGG | + | chr5_4:40756216-40756235 | Msa0850930:CDS | 30.0% | |
| ! | ATGCCTATTTCTTTGTTTGA+TGG | - | chr5_4:40756222-40756241 | None:intergenic | 30.0% |
| ! | AGATTTGGTAATTGTTCGAA+AGG | + | chr5_4:40756276-40756295 | Msa0850930:CDS | 30.0% |
| ! | CAATTTTGTAACTATGCTCT+TGG | + | chr5_4:40756300-40756319 | Msa0850930:CDS | 30.0% |
| ! | ATTTTGTAACTATGCTCTTG+GGG | + | chr5_4:40756302-40756321 | Msa0850930:CDS | 30.0% |
| ! | ACAAGTGTAGTTTTCTTCAT+AGG | + | chr5_4:40756483-40756502 | Msa0850930:CDS | 30.0% |
| ! | CAAGTGTAGTTTTCTTCATA+GGG | + | chr5_4:40756484-40756503 | Msa0850930:CDS | 30.0% |
| TATGATCAACTACATTAGGA+GGG | - | chr5_4:40756567-40756586 | None:intergenic | 30.0% | |
| ATATGATCAACTACATTAGG+AGG | - | chr5_4:40756568-40756587 | None:intergenic | 30.0% | |
| TGTCTGACTCATTAAGAATT+TGG | + | chr5_4:40757167-40757186 | Msa0850930:intron | 30.0% | |
| TTTGCTGATGGTTTCTAATT+TGG | + | chr5_4:40757297-40757316 | Msa0850930:intron | 30.0% | |
| !! | GGTTAGAATTTTGATGTCAA+AGG | - | chr5_4:40757341-40757360 | None:intergenic | 30.0% |
| ATACATAAAACCAACGATTG+TGG | - | chr5_4:40757371-40757390 | None:intergenic | 30.0% | |
| TGAGAATAAATCTCAACCAT+TGG | + | chr5_4:40757500-40757519 | Msa0850930:intron | 30.0% | |
| !!! | TTGATTGATTTTAAGGTAGG+TGG | - | chr5_4:40757694-40757713 | None:intergenic | 30.0% |
| ATCAAAGACATTCCATGTAT+TGG | + | chr5_4:40757709-40757728 | Msa0850930:intron | 30.0% | |
| !! | TAATGTCTATTTGGGGTTTT+TGG | - | chr5_4:40757840-40757859 | None:intergenic | 30.0% |
| TCTTAGCTTAATTGCTTGTT+TGG | - | chr5_4:40757914-40757933 | None:intergenic | 30.0% | |
| AGAAGAAAAAGTAGAAGAGA+AGG | + | chr5_4:40758126-40758145 | Msa0850930:intron | 30.0% | |
| ! | TTTTATCAAGCTACACCTTA+AGG | + | chr5_4:40758349-40758368 | Msa0850930:intron | 30.0% |
| !! | CACACCTTCTAAAATATAAG+TGG | + | chr5_4:40758408-40758427 | Msa0850930:intron | 30.0% |
| !! | ACACCCACTTATATTTTAGA+AGG | - | chr5_4:40758415-40758434 | None:intergenic | 30.0% |
| CAAAAGGAGTTTGAGAAGTT+TGG | - | chr5_4:40755355-40755374 | None:intergenic | 35.0% | |
| TAACAGATCTTGTTCCCATT+AGG | + | chr5_4:40755423-40755442 | Msa0850930:CDS | 35.0% | |
| AACAGATCTTGTTCCCATTA+GGG | + | chr5_4:40755424-40755443 | Msa0850930:CDS | 35.0% | |
| TTCATTACATGAGAAGGCTT+TGG | - | chr5_4:40755483-40755502 | None:intergenic | 35.0% | |
| AGAGAGTTCATTACATGAGA+AGG | - | chr5_4:40755489-40755508 | None:intergenic | 35.0% | |
| !! | GCCTTTTCAGTTTTTCTAGT+AGG | - | chr5_4:40755536-40755555 | None:intergenic | 35.0% |
| TGAGGTTTCTTGACAATAAC+AGG | - | chr5_4:40755566-40755585 | None:intergenic | 35.0% | |
| ! | TACAGACTGGTCATAAAATG+AGG | - | chr5_4:40755584-40755603 | None:intergenic | 35.0% |
| TGTTAATCCATAAGTCTGCA+AGG | + | chr5_4:40755604-40755623 | Msa0850930:intron | 35.0% | |
| ! | TGAAGTAAGGGTGTGAAAAT+GGG | - | chr5_4:40755661-40755680 | None:intergenic | 35.0% |
| ! | TTGAAGTAAGGGTGTGAAAA+TGG | - | chr5_4:40755662-40755681 | None:intergenic | 35.0% |
| ! | ATTTTCACACCCTTACTTCA+AGG | + | chr5_4:40755661-40755680 | Msa0850930:intron | 35.0% |
| !!! | TGAGTTGCTTTTTACAACCT+TGG | + | chr5_4:40755882-40755901 | Msa0850930:intron | 35.0% |
| TATCCAATTGGATGTCACTA+AGG | + | chr5_4:40755964-40755983 | Msa0850930:intron | 35.0% | |
| ATCCAATTGGATGTCACTAA+GGG | + | chr5_4:40755965-40755984 | Msa0850930:intron | 35.0% | |
| GTCGTAACTACTAATAAAGG+AGG | - | chr5_4:40756090-40756109 | None:intergenic | 35.0% | |
| TCACTTCAATGTTATCGTTG+CGG | - | chr5_4:40756125-40756144 | None:intergenic | 35.0% | |
| CTCTTGTTCATTGGAAATTG+AGG | - | chr5_4:40756150-40756169 | None:intergenic | 35.0% | |
| CTCAATTTCCAATGAACAAG+AGG | + | chr5_4:40756148-40756167 | Msa0850930:CDS | 35.0% | |
| ATTCTTACCCTCTTGTTCAT+TGG | - | chr5_4:40756159-40756178 | None:intergenic | 35.0% | |
| TCAGAGAATCATTCACAAGA+TGG | + | chr5_4:40756415-40756434 | Msa0850930:CDS | 35.0% | |
| !! | CTCTCCAAGAAGTATTACAA+TGG | + | chr5_4:40756440-40756459 | Msa0850930:CDS | 35.0% |
| CTCACCATTGTAATACTTCT+TGG | - | chr5_4:40756447-40756466 | None:intergenic | 35.0% | |
| !! | CAAGAAGTATTACAATGGTG+AGG | + | chr5_4:40756445-40756464 | Msa0850930:CDS | 35.0% |
| AAACTACACTTGTCACCATA+AGG | - | chr5_4:40756476-40756495 | None:intergenic | 35.0% | |
| ATGATCAACTACATTAGGAG+GGG | - | chr5_4:40756566-40756585 | None:intergenic | 35.0% | |
| ! | GTTGGTTATGAATGCTGATT+TGG | + | chr5_4:40756625-40756644 | Msa0850930:intron | 35.0% |
| ATAAAAGCCATTGTAGCCTA+TGG | - | chr5_4:40756784-40756803 | None:intergenic | 35.0% | |
| TAGAGCAGTGTTATCATAAG+TGG | - | chr5_4:40756884-40756903 | None:intergenic | 35.0% | |
| CTGACTCATTAAGAATTTGG+AGG | + | chr5_4:40757170-40757189 | Msa0850930:intron | 35.0% | |
| TTGATGTCAAAGGACAAACA+GGG | - | chr5_4:40757331-40757350 | None:intergenic | 35.0% | |
| TTTGATGTCAAAGGACAAAC+AGG | - | chr5_4:40757332-40757351 | None:intergenic | 35.0% | |
| AAATCTCAACCATTGGATCA+AGG | + | chr5_4:40757507-40757526 | Msa0850930:intron | 35.0% | |
| ! | TTCTCTGTCTGAATCGTTTT+GGG | + | chr5_4:40757619-40757638 | Msa0850930:intron | 35.0% |
| !!! | ATTTTAAGGTAGGTGGAGAA+GGG | - | chr5_4:40757687-40757706 | None:intergenic | 35.0% |
| ! | ATTCCATGTATTGGTGAGAA+AGG | + | chr5_4:40757718-40757737 | Msa0850930:intron | 35.0% |
| ! | TTCCATGTATTGGTGAGAAA+GGG | + | chr5_4:40757719-40757738 | Msa0850930:intron | 35.0% |
| ! | ATCCATGTATTGGTGAGAAA+GGG | + | chr5_4:40757791-40757810 | Msa0850930:intron | 35.0% |
| AACCCCAAATAGACATTACT+TGG | + | chr5_4:40757842-40757861 | Msa0850930:intron | 35.0% | |
| ACCCCAAATAGACATTACTT+GGG | + | chr5_4:40757843-40757862 | Msa0850930:intron | 35.0% | |
| ACCCAAGTAATGTCTATTTG+GGG | - | chr5_4:40757847-40757866 | None:intergenic | 35.0% | |
| CACCCAAGTAATGTCTATTT+GGG | - | chr5_4:40757848-40757867 | None:intergenic | 35.0% | |
| ACACCCAAGTAATGTCTATT+TGG | - | chr5_4:40757849-40757868 | None:intergenic | 35.0% | |
| ! | ATTACTTGGGTGTGTTGTTA+TGG | + | chr5_4:40757856-40757875 | Msa0850930:intron | 35.0% |
| ! | GTTGTTATGGTCTGAAGTTT+AGG | + | chr5_4:40757869-40757888 | Msa0850930:intron | 35.0% |
| TTTGTTTGGTTGAGACTTTG+GGG | - | chr5_4:40758007-40758026 | None:intergenic | 35.0% | |
| ! | CTTTGTTTGGTTGAGACTTT+GGG | - | chr5_4:40758008-40758027 | None:intergenic | 35.0% |
| ! | TCTTTGTTTGGTTGAGACTT+TGG | - | chr5_4:40758009-40758028 | None:intergenic | 35.0% |
| !! | GGGTTTTGTGATGATGATAA+TGG | - | chr5_4:40758035-40758054 | None:intergenic | 35.0% |
| AGGTGCAGTTCACAAAAAAA+CGG | + | chr5_4:40758075-40758094 | Msa0850930:intron | 35.0% | |
| AAAAGTCACGTGAGAGTTTA+TGG | - | chr5_4:40758152-40758171 | None:intergenic | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr5_4:40758322-40758341 | Msa0850930:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | - | chr5_4:40758558-40758577 | None:intergenic | 35.0% | |
| AAGTAGGTAAATGCACCTTA+AGG | - | chr5_4:40758367-40758386 | None:intergenic | 35.0% | |
| GTATTCTAGCAAATGCACAT+AGG | + | chr5_4:40758433-40758452 | Msa0850930:intron | 35.0% | |
| AATAAGTGGGTGTATGTTAG+CGG | - | chr5_4:40758461-40758480 | None:intergenic | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | + | chr5_4:40758558-40758577 | Msa0850930:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr5_4:40758322-40758341 | None:intergenic | 35.0% |
| !!! | TACACCCACTAGTTTTTATG+TGG | - | chr5_4:40758565-40758584 | None:intergenic | 35.0% |
| AAGAGTCAGAAGAAGATAGA+TGG | - | chr5_4:40758715-40758734 | None:intergenic | 35.0% | |
| AGTTACAACTTACAAGTTCC+TGG | + | chr5_4:40758761-40758780 | Msa0850930:CDS | 35.0% | |
| ! | GTATAAACTGGTAAGGCATT+TGG | - | chr5_4:40758854-40758873 | None:intergenic | 35.0% |
| GGTGCATCATTTGTATAAAC+TGG | - | chr5_4:40758866-40758885 | None:intergenic | 35.0% | |
| TCAACACTATTTATGGCGAT+TGG | + | chr5_4:40758975-40758994 | Msa0850930:CDS | 35.0% | |
| CTTGTGAAATCTTGGTTTCC+TGG | - | chr5_4:40755325-40755344 | None:intergenic | 40.0% | |
| GTCAGATGCTTGTGAAATCT+TGG | - | chr5_4:40755333-40755352 | None:intergenic | 40.0% | |
| !! | TCTTTTGCTTTGGATGGTGT+AGG | - | chr5_4:40755386-40755405 | None:intergenic | 40.0% |
| ACACCATCCAAAGCAAAAGA+CGG | + | chr5_4:40755386-40755405 | Msa0850930:CDS | 40.0% | |
| ! | TGATGATCCGTCTTTTGCTT+TGG | - | chr5_4:40755396-40755415 | None:intergenic | 40.0% |
| AGCAAAAGACGGATCATCAA+AGG | + | chr5_4:40755397-40755416 | Msa0850930:CDS | 40.0% | |
| TGGCTTGAAACAACCCTAAT+GGG | - | chr5_4:40755440-40755459 | None:intergenic | 40.0% | |
| ATGGCTTGAAACAACCCTAA+TGG | - | chr5_4:40755441-40755460 | None:intergenic | 40.0% | |
| ATGTGTACCTTGCAGACTTA+TGG | - | chr5_4:40755614-40755633 | None:intergenic | 40.0% | |
| ! | CATCCCATTAGGGTTCATTT+TGG | + | chr5_4:40755631-40755650 | Msa0850930:intron | 40.0% |
| ! | TCTTCCTCTTTTATGATGCC+AGG | + | chr5_4:40755727-40755746 | Msa0850930:intron | 40.0% |
| ! | CTTCCTCTTTTATGATGCCA+GGG | + | chr5_4:40755728-40755747 | Msa0850930:intron | 40.0% |
| ! | ATTTATGATGACGAAGACCC+TGG | - | chr5_4:40755748-40755767 | None:intergenic | 40.0% |
| ATCCCTTAGTGACATCCAAT+TGG | - | chr5_4:40755970-40755989 | None:intergenic | 40.0% | |
| AACTAGCTCCTTCCAATTCA+CGG | - | chr5_4:40756348-40756367 | None:intergenic | 40.0% | |
| AATGGTGAGGAATGTCCTTA+TGG | + | chr5_4:40756458-40756477 | Msa0850930:CDS | 40.0% | |
| ! | GTAGTTTTCTTCATAGGGTG+TGG | + | chr5_4:40756489-40756508 | Msa0850930:intron | 40.0% |
| ACAATTTCACCCCTGCTTAT+AGG | + | chr5_4:40756598-40756617 | Msa0850930:intron | 40.0% | |
| ACCAACTTTGCCTATAAGCA+GGG | - | chr5_4:40756611-40756630 | None:intergenic | 40.0% | |
| AACCAACTTTGCCTATAAGC+AGG | - | chr5_4:40756612-40756631 | None:intergenic | 40.0% | |
| AATAATCCGGCATACAAGCA+TGG | - | chr5_4:40756838-40756857 | None:intergenic | 40.0% | |
| ATGCTTGTATGCCGGATTAT+TGG | + | chr5_4:40756837-40756856 | Msa0850930:intron | 40.0% | |
| TGTTATCATAAGTGGAAGGC+AGG | - | chr5_4:40756876-40756895 | None:intergenic | 40.0% | |
| GCAGTGTTATCATAAGTGGA+AGG | - | chr5_4:40756880-40756899 | None:intergenic | 40.0% | |
| GAGGTACATTTCTCATTGCA+AGG | + | chr5_4:40757189-40757208 | Msa0850930:intron | 40.0% | |
| ACCAACGATTGTGGCTAAAA+CGG | - | chr5_4:40757362-40757381 | None:intergenic | 40.0% | |
| AACCATTGGATCAAGGTCTA+TGG | + | chr5_4:40757514-40757533 | Msa0850930:intron | 40.0% | |
| ! | CTTCTCTGTCTGAATCGTTT+TGG | + | chr5_4:40757618-40757637 | Msa0850930:intron | 40.0% |
| ! | TCTCTGTCTGAATCGTTTTG+GGG | + | chr5_4:40757620-40757639 | Msa0850930:intron | 40.0% |
| ! | GATGTTGGATTGTTGGTTGT+GGG | - | chr5_4:40757655-40757674 | None:intergenic | 40.0% |
| ! | TGATGTTGGATTGTTGGTTG+TGG | - | chr5_4:40757656-40757675 | None:intergenic | 40.0% |
| !!! | TTTTAAGGTAGGTGGAGAAG+GGG | - | chr5_4:40757686-40757705 | None:intergenic | 40.0% |
| !!! | GATTTTAAGGTAGGTGGAGA+AGG | - | chr5_4:40757688-40757707 | None:intergenic | 40.0% |
| AACCCTTTCTCACCAATACA+TGG | - | chr5_4:40757724-40757743 | None:intergenic | 40.0% | |
| ! | GATCCATGTATTGGTGAGAA+AGG | + | chr5_4:40757790-40757809 | Msa0850930:intron | 40.0% |
| AACCCTTTCTCACCAATACA+TGG | - | chr5_4:40757724-40757743 | None:intergenic | 40.0% | |
| ATCATCATCACAAAACCCTC+AGG | + | chr5_4:40758037-40758056 | Msa0850930:intron | 40.0% | |
| TCATCATCACAAAACCCTCA+GGG | + | chr5_4:40758038-40758057 | Msa0850930:intron | 40.0% | |
| TCTATCTTCTTCTACCCTGA+GGG | - | chr5_4:40758055-40758074 | None:intergenic | 40.0% | |
| TTCTATCTTCTTCTACCCTG+AGG | - | chr5_4:40758056-40758075 | None:intergenic | 40.0% | |
| TCAGGGTAGAAGAAGATAGA+AGG | + | chr5_4:40758055-40758074 | Msa0850930:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr5_4:40758321-40758340 | Msa0850930:intron | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | - | chr5_4:40758557-40758576 | None:intergenic | 40.0% | |
| CACTCCCACATAAAAACTAG+TGG | + | chr5_4:40758557-40758576 | Msa0850930:intron | 40.0% | |
| TACAACTTACAAGTTCCTGG+TGG | + | chr5_4:40758764-40758783 | Msa0850930:CDS | 40.0% | |
| ! | GGTAAGGCATTTGGTAAAGT+TGG | - | chr5_4:40758845-40758864 | None:intergenic | 40.0% |
| CTAAGAAGCAGCCATTACTT+TGG | + | chr5_4:40758933-40758952 | Msa0850930:CDS | 40.0% | |
| !! | GATCCGTCTTTTGCTTTGGA+TGG | - | chr5_4:40755392-40755411 | None:intergenic | 45.0% |
| ! | TCCTTTTCTTGGTGGGAACA+TGG | - | chr5_4:40755460-40755479 | None:intergenic | 45.0% |
| ! | GCTTTGGTCCTTTTCTTGGT+GGG | - | chr5_4:40755467-40755486 | None:intergenic | 45.0% |
| !! | GAAGGCTTTGGTCCTTTTCT+TGG | - | chr5_4:40755471-40755490 | None:intergenic | 45.0% |
| TGCAAGGTACACATCCCATT+AGG | + | chr5_4:40755620-40755639 | Msa0850930:intron | 45.0% | |
| GCAAGGTACACATCCCATTA+GGG | + | chr5_4:40755621-40755640 | Msa0850930:intron | 45.0% | |
| GGATGCGTACCTTGAAGTAA+GGG | - | chr5_4:40755673-40755692 | None:intergenic | 45.0% | |
| AGGATGCGTACCTTGAAGTA+AGG | - | chr5_4:40755674-40755693 | None:intergenic | 45.0% | |
| AGACCCTGGCATCATAAAAG+AGG | - | chr5_4:40755734-40755753 | None:intergenic | 45.0% | |
| ATGTTATCGTTGCGGTTGTC+TGG | - | chr5_4:40756117-40756136 | None:intergenic | 45.0% | |
| ! | AGAAGGGCGTATGAATGCAT+TGG | - | chr5_4:40756199-40756218 | None:intergenic | 45.0% |
| TTGTAACTATGCTCTTGGGG+TGG | + | chr5_4:40756305-40756324 | Msa0850930:intron | 45.0% | |
| CCAACTTTGCCTATAAGCAG+GGG | - | chr5_4:40756610-40756629 | None:intergenic | 45.0% | |
| ! | ATCCAGTGTGTTTCTGCCAT+AGG | + | chr5_4:40756804-40756823 | Msa0850930:intron | 45.0% |
| ACAACTCCATGCTTGTATGC+CGG | + | chr5_4:40756829-40756848 | Msa0850930:intron | 45.0% | |
| CATAAGTGGAAGGCAGGTTA+CGG | - | chr5_4:40756870-40756889 | None:intergenic | 45.0% | |
| GATATAGAACTGTTGCGCAG+CGG | - | chr5_4:40756967-40756986 | None:intergenic | 45.0% | |
| !! | ACCGTTTTAGCCACAATCGT+TGG | + | chr5_4:40757358-40757377 | Msa0850930:intron | 45.0% |
| AGCCATAGACCTTGATCCAA+TGG | - | chr5_4:40757519-40757538 | None:intergenic | 45.0% | |
| TTCAGACAGAGAAGAGAGGA+AGG | - | chr5_4:40757612-40757631 | None:intergenic | 45.0% | |
| ACGATTCAGACAGAGAAGAG+AGG | - | chr5_4:40757616-40757635 | None:intergenic | 45.0% | |
| AACTTACAAGTTCCTGGTGG+AGG | + | chr5_4:40758767-40758786 | Msa0850930:CDS | 45.0% | |
| !! | TAGACTTGCTAGGATGTTGG+CGG | - | chr5_4:40758888-40758907 | None:intergenic | 45.0% |
| !! | AGCTAGACTTGCTAGGATGT+TGG | - | chr5_4:40758891-40758910 | None:intergenic | 45.0% |
| CATCCTAGCAAGTCTAGCTA+TGG | + | chr5_4:40758892-40758911 | Msa0850930:CDS | 45.0% | |
| ! | TTGCCATAGCTAGACTTGCT+AGG | - | chr5_4:40758898-40758917 | None:intergenic | 45.0% |
| AGCAAGTCTAGCTATGGCAA+AGG | + | chr5_4:40758898-40758917 | Msa0850930:CDS | 45.0% | |
| TCTAGCTATGGCAAAGGAAG+AGG | + | chr5_4:40758904-40758923 | Msa0850930:CDS | 45.0% | |
| TATGGCAAAGGAAGAGGAGA+AGG | + | chr5_4:40758910-40758929 | Msa0850930:CDS | 45.0% | |
| AGAAGCAGCCATTACTTTGG+TGG | + | chr5_4:40758936-40758955 | Msa0850930:CDS | 45.0% | |
| GGCAAGTTTGGAAGAACAAG+AGG | - | chr5_4:40759013-40759032 | None:intergenic | 45.0% | |
| !!! | TTTAATATTTTGTATTAAAT+AGG | + | chr5_4:40757003-40757022 | Msa0850930:intron | 5.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr5_4:40758289-40758308 | None:intergenic | 5.0% |
| GGTGTAGGAAGCGACACAAA+AGG | - | chr5_4:40755371-40755390 | None:intergenic | 50.0% | |
| GCCATGTTCCCACCAAGAAA+AGG | + | chr5_4:40755456-40755475 | Msa0850930:CDS | 50.0% | |
| !! | GGCTTTGGTCCTTTTCTTGG+TGG | - | chr5_4:40755468-40755487 | None:intergenic | 50.0% |
| CTCTTGGGGTGGATGAGATA+AGG | + | chr5_4:40756316-40756335 | Msa0850930:intron | 50.0% | |
| ATAAGGCAGCCACCGTGAAT+TGG | + | chr5_4:40756333-40756352 | Msa0850930:intron | 50.0% | |
| TAGCTCCTTCCAATTCACGG+TGG | - | chr5_4:40756345-40756364 | None:intergenic | 50.0% | |
| CAACGAGGAACGACTACAGT+TGG | + | chr5_4:40756376-40756395 | Msa0850930:CDS | 50.0% | |
| CCCCTGCTTATAGGCAAAGT+TGG | + | chr5_4:40756607-40756626 | Msa0850930:intron | 50.0% | |
| TTGCTGCCATAGCAACACCA+AGG | + | chr5_4:40756735-40756754 | Msa0850930:intron | 50.0% | |
| ! | GATTTTGTGCCAGCAGCCAT+AGG | + | chr5_4:40756765-40756784 | Msa0850930:intron | 50.0% |
| AAGCATGGAGTTGTGGCCTA+TGG | - | chr5_4:40756823-40756842 | None:intergenic | 50.0% | |
| GGCATACAAGCATGGAGTTG+TGG | - | chr5_4:40756830-40756849 | None:intergenic | 50.0% | |
| ACGGAGGGTAGCCAATAATC+CGG | - | chr5_4:40756851-40756870 | None:intergenic | 50.0% | |
| TGTCAAAGGACAAACAGGGC+TGG | - | chr5_4:40757327-40757346 | None:intergenic | 50.0% | |
| GGTGGGTGATGTTGGATTGT+TGG | - | chr5_4:40757662-40757681 | None:intergenic | 50.0% | |
| !! | GTTCCTGGTGGAGGCATTAA+AGG | + | chr5_4:40758776-40758795 | Msa0850930:CDS | 50.0% |
| TCACCTTTAATGCCTCCACC+AGG | - | chr5_4:40758782-40758801 | None:intergenic | 50.0% | |
| !! | GGTGGAGGCATTAAAGGTGA+AGG | + | chr5_4:40758782-40758801 | Msa0850930:CDS | 50.0% |
| !! | AGACTTGCTAGGATGTTGGC+GGG | - | chr5_4:40758887-40758906 | None:intergenic | 50.0% |
| TCCAAACTTGCCAAGTGCAG+AGG | + | chr5_4:40759021-40759040 | Msa0850930:CDS | 50.0% | |
| TCCTCTGCACTTGGCAAGTT+TGG | - | chr5_4:40759025-40759044 | None:intergenic | 50.0% | |
| GCTAGTTAGTCCTCGCAACG+AGG | + | chr5_4:40756361-40756380 | Msa0850930:CDS | 55.0% | |
| TGTAGTCGTTCCTCGTTGCG+AGG | - | chr5_4:40756374-40756393 | None:intergenic | 55.0% | |
| !! | TCCACGCCTTGGTGTTGCTA+TGG | - | chr5_4:40756744-40756763 | None:intergenic | 55.0% |
| ATAGCAACACCAAGGCGTGG+AGG | + | chr5_4:40756743-40756762 | Msa0850930:intron | 55.0% | |
| GCACAAAATCCTCCACGCCT+TGG | - | chr5_4:40756755-40756774 | None:intergenic | 55.0% | |
| CCATTGTAGCCTATGGCTGC+TGG | - | chr5_4:40756777-40756796 | None:intergenic | 55.0% | |
| CCAGCAGCCATAGGCTACAA+TGG | + | chr5_4:40756774-40756793 | Msa0850930:intron | 55.0% | |
| GGCCTATGGCAGAAACACAC+TGG | - | chr5_4:40756809-40756828 | None:intergenic | 55.0% | |
| AGTGGAAGGCAGGTTACGGA+GGG | - | chr5_4:40756866-40756885 | None:intergenic | 55.0% | |
| AAGTGGAAGGCAGGTTACGG+AGG | - | chr5_4:40756867-40756886 | None:intergenic | 55.0% | |
| TAAGGTAGGTGGAGAAGGGG+TGG | - | chr5_4:40757683-40757702 | None:intergenic | 55.0% | |
| GGCAGCCACCGTGAATTGGA+AGG | + | chr5_4:40756337-40756356 | Msa0850930:intron | 60.0% | |
| GCCATAGCAACACCAAGGCG+TGG | + | chr5_4:40756740-40756759 | Msa0850930:intron | 60.0% | |
| !! | GAAGGGGTGGTGGGTGATGT+TGG | - | chr5_4:40757670-40757689 | None:intergenic | 60.0% |
| GTAGGTGGAGAAGGGGTGGT+GGG | - | chr5_4:40757679-40757698 | None:intergenic | 60.0% | |
| GGTAGGTGGAGAAGGGGTGG+TGG | - | chr5_4:40757680-40757699 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 40755320 | 40759051 | 40755320 | ID=Msa0850930;Name=Msa0850930 |
| chr5_4 | mRNA | 40755320 | 40759051 | 40755320 | ID=Msa0850930-mRNA-1;Parent=Msa0850930;Name=Msa0850930-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|0|0|0.5|0.4|0.5|6|0|312 |
| chr5_4 | exon | 40755320 | 40755565 | 40755320 | ID=Msa0850930-mRNA-1:exon:12844;Parent=Msa0850930-mRNA-1 |
| chr5_4 | exon | 40755928 | 40755934 | 40755928 | ID=Msa0850930-mRNA-1:exon:12845;Parent=Msa0850930-mRNA-1 |
| chr5_4 | exon | 40756103 | 40756323 | 40756103 | ID=Msa0850930-mRNA-1:exon:12846;Parent=Msa0850930-mRNA-1 |
| chr5_4 | exon | 40756338 | 40756505 | 40756338 | ID=Msa0850930-mRNA-1:exon:12847;Parent=Msa0850930-mRNA-1 |
| chr5_4 | exon | 40757791 | 40757796 | 40757791 | ID=Msa0850930-mRNA-1:exon:12848;Parent=Msa0850930-mRNA-1 |
| chr5_4 | exon | 40758761 | 40759051 | 40758761 | ID=Msa0850930-mRNA-1:exon:12849;Parent=Msa0850930-mRNA-1 |
| chr5_4 | CDS | 40755320 | 40755565 | 40755320 | ID=Msa0850930-mRNA-1:cds;Parent=Msa0850930-mRNA-1 |
| chr5_4 | CDS | 40755928 | 40755934 | 40755928 | ID=Msa0850930-mRNA-1:cds;Parent=Msa0850930-mRNA-1 |
| chr5_4 | CDS | 40756103 | 40756323 | 40756103 | ID=Msa0850930-mRNA-1:cds;Parent=Msa0850930-mRNA-1 |
| chr5_4 | CDS | 40756338 | 40756505 | 40756338 | ID=Msa0850930-mRNA-1:cds;Parent=Msa0850930-mRNA-1 |
| chr5_4 | CDS | 40757791 | 40757796 | 40757791 | ID=Msa0850930-mRNA-1:cds;Parent=Msa0850930-mRNA-1 |
| chr5_4 | CDS | 40758761 | 40759051 | 40758761 | ID=Msa0850930-mRNA-1:cds;Parent=Msa0850930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
