Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0850940 | XP_003600003.2 | 63.636 | 121 | 37 | 2 | 91 | 206 | 3 | 121 | 1.33e-46 | 165 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0850940 | sp|Q9LT81|C3H39_ARATH | 38.983 | 118 | 48 | 3 | 109 | 202 | 91 | 208 | 1.09e-17 | 84.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0850940 | G7J1X0 | 63.636 | 121 | 37 | 2 | 91 | 206 | 3 | 121 | 6.37e-47 | 165 |
Gene ID | Type | Classification |
---|---|---|
Msa0850940 | TF | C3H |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0850940 | MtrunA17_Chr3g0098251 | 63.636 | 121 | 37 | 2 | 91 | 206 | 3 | 121 | 3.06e-50 | 163 |
Msa0850940 | MtrunA17_Chr4g0063401 | 51.634 | 153 | 47 | 5 | 77 | 202 | 17 | 169 | 3.08e-39 | 136 |
Msa0850940 | MtrunA17_Chr4g0063361 | 45.752 | 153 | 55 | 4 | 77 | 202 | 17 | 168 | 1.06e-31 | 116 |
Msa0850940 | MtrunA17_Chr4g0063391 | 51.376 | 109 | 41 | 3 | 105 | 202 | 33 | 140 | 9.88e-27 | 103 |
Msa0850940 | MtrunA17_Chr4g0063371 | 39.437 | 142 | 66 | 4 | 76 | 202 | 2 | 138 | 3.89e-21 | 88.6 |
Msa0850940 | MtrunA17_Chr8g0360671 | 56.923 | 65 | 21 | 2 | 144 | 203 | 41 | 103 | 5.95e-17 | 75.9 |
Msa0850940 | MtrunA17_Chr8g0366501 | 32.520 | 123 | 62 | 2 | 116 | 217 | 86 | 208 | 2.17e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0850940 | AT3G19360.1 | 38.983 | 118 | 48 | 3 | 109 | 202 | 91 | 208 | 1.11e-18 | 84.3 |
Msa0850940 | AT3G19360.2 | 38.983 | 118 | 48 | 3 | 109 | 202 | 91 | 208 | 1.11e-18 | 84.3 |
Msa0850940 | AT1G32360.1 | 35.398 | 113 | 47 | 2 | 116 | 202 | 85 | 197 | 2.38e-11 | 63.2 |
Find 59 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAAGGAGTTTGAGAAGTT+TGG | 0.274477 | 5_4:-40784696 | None:intergenic |
ATGCCTATTTCTTTGTTTGA+TGG | 0.278931 | 5_4:-40785587 | None:intergenic |
TCTCCATCAAACAAAGAAAT+AGG | 0.289126 | 5_4:+40785584 | Msa0850940:CDS |
AACAGATCTTGTTCCCATTA+GGG | 0.307940 | 5_4:+40784768 | Msa0850940:CDS |
ATGCTTGTATGCCGGATTAT+TGG | 0.312159 | 5_4:+40786205 | Msa0850940:CDS |
CTTGTGAAATCTTGGTTTCA+TGG | 0.317941 | 5_4:-40784666 | None:intergenic |
TAACAGATCTTGTTCCCATT+AGG | 0.329042 | 5_4:+40784767 | Msa0850940:CDS |
ATTCTTACCCTCTTGTTCAT+TGG | 0.332135 | 5_4:-40785524 | None:intergenic |
CTCACCATTGTAATACTTCT+CGG | 0.344652 | 5_4:-40785812 | None:intergenic |
ATTTGTCATAAGTTTAGATT+TGG | 0.368220 | 5_4:+40785629 | Msa0850940:CDS |
CTCTTGTTCATTGGAAATTG+AGG | 0.372663 | 5_4:-40785515 | None:intergenic |
GTCAGATGCTTGTGAAATCT+TGG | 0.384268 | 5_4:-40784674 | None:intergenic |
ATGGCTTGAAACAACCCTAA+TGG | 0.387771 | 5_4:-40784782 | None:intergenic |
ATAAGGCAGCCACCGTGAAT+TGG | 0.397681 | 5_4:+40785701 | Msa0850940:intron |
TGGCTTGAAACAACCCTAAT+GGG | 0.399086 | 5_4:-40784781 | None:intergenic |
ATGTTATCGTTGCGGTTGTT+TGG | 0.404565 | 5_4:-40785482 | None:intergenic |
CCAATACAACGGCTGCGAAA+AGG | 0.408959 | 5_4:+40784824 | Msa0850940:CDS |
CAATACAACGGCTGCGAAAA+GGG | 0.431504 | 5_4:+40784825 | Msa0850940:CDS |
CTCAATTTCCAATGAACAAG+AGG | 0.448816 | 5_4:+40785516 | Msa0850940:CDS |
AATGGTGAGGAATGTCCTTA+TGG | 0.456697 | 5_4:+40785826 | Msa0850940:CDS |
TCTTGTTCATTGGAAATTGA+GGG | 0.459679 | 5_4:-40785514 | None:intergenic |
ATTTCTTTGTTTGATGGAGA+AGG | 0.470948 | 5_4:-40785581 | None:intergenic |
AAACTACACTTGTCACCATA+AGG | 0.480255 | 5_4:-40785841 | None:intergenic |
CCATTGTAGCCTATGGCTGC+TGG | 0.486648 | 5_4:-40786142 | None:intergenic |
AAGCATGGAGTTGTGGCCTA+TGG | 0.492762 | 5_4:-40786188 | None:intergenic |
AACTAGCTCCTTCCAATTCA+CGG | 0.494125 | 5_4:-40785713 | None:intergenic |
ATAAAAGCCATTGTAGCCTA+TGG | 0.511831 | 5_4:-40786149 | None:intergenic |
TTTCTTTGTTTGATGGAGAA+GGG | 0.512285 | 5_4:-40785580 | None:intergenic |
GCCATAGCGGCACCAAGGCG+TGG | 0.513137 | 5_4:+40786108 | Msa0850940:intron |
GCCATGTTCCCACCAAGAAA+AGG | 0.519256 | 5_4:+40784800 | Msa0850940:CDS |
GCACAAAATCCTCCACGCCT+TGG | 0.521458 | 5_4:-40786120 | None:intergenic |
CAACGAGGAACGACTACAGC+TGG | 0.537664 | 5_4:+40785744 | Msa0850940:CDS |
AGATTTGGTAATTGTTCGAA+AGG | 0.541030 | 5_4:+40785644 | Msa0850940:CDS |
AGAGAGTTCATTACATGAGA+AGG | 0.541237 | 5_4:-40784853 | None:intergenic |
ATCCAGTGTGTTTCTGCCAT+AGG | 0.556468 | 5_4:+40786172 | Msa0850940:CDS |
ACGGAGGGTAGCCAATAATC+CGG | 0.562607 | 5_4:-40786216 | None:intergenic |
ACAACTCCATGCTTGTATGC+CGG | 0.564483 | 5_4:+40786197 | Msa0850940:CDS |
TCAGAGAATCATTCACAAGA+TGG | 0.566966 | 5_4:+40785783 | Msa0850940:CDS |
AGAAGGGCGTATGAATGCAT+TGG | 0.569393 | 5_4:-40785564 | None:intergenic |
TCACTTCAATGTTATCGTTG+CGG | 0.571554 | 5_4:-40785490 | None:intergenic |
GGCATACAAGCATGGAGTTG+TGG | 0.574551 | 5_4:-40786195 | None:intergenic |
CCAGCAGCCATAGGCTACAA+TGG | 0.578727 | 5_4:+40786142 | Msa0850940:CDS |
GGTGTAGGAAGTGACACAAA+AGG | 0.592126 | 5_4:-40784712 | None:intergenic |
AATAATCCGGCATACAAGCA+TGG | 0.596755 | 5_4:-40786203 | None:intergenic |
GGCAGCCACCGTGAATTGGA+AGG | 0.607378 | 5_4:+40785705 | Msa0850940:intron |
GGCCTATGGCAGAAACACAC+TGG | 0.609914 | 5_4:-40786174 | None:intergenic |
AGCAAAAGACGGATCATCAG+AGG | 0.611904 | 5_4:+40784741 | Msa0850940:CDS |
AAGTGGAAGGCAGGTTACGG+AGG | 0.624445 | 5_4:-40786232 | None:intergenic |
TGTAGTCGTTCCTCGTTGCG+AGG | 0.631526 | 5_4:-40785739 | None:intergenic |
TTGCTGCCATAGCGGCACCA+AGG | 0.631619 | 5_4:+40786103 | Msa0850940:intron |
AGTGGAAGGCAGGTTACGGA+GGG | 0.631984 | 5_4:-40786231 | None:intergenic |
TCAATTTCCAATGAACAAGA+GGG | 0.637810 | 5_4:+40785517 | Msa0850940:CDS |
CGAGAAGTATTACAATGGTG+AGG | 0.652954 | 5_4:+40785813 | Msa0850940:CDS |
ACACCATCCAAAGCAAAAGA+CGG | 0.654937 | 5_4:+40784730 | Msa0850940:CDS |
CTCTCCGAGAAGTATTACAA+TGG | 0.666265 | 5_4:+40785808 | Msa0850940:CDS |
ATAGCGGCACCAAGGCGTGG+AGG | 0.667840 | 5_4:+40786111 | Msa0850940:intron |
CAAGAAAAGGACCAATACAA+CGG | 0.699937 | 5_4:+40784813 | Msa0850940:CDS |
GCTAGTTAGTCCTCGCAACG+AGG | 0.721526 | 5_4:+40785729 | Msa0850940:CDS |
TAGCTCCTTCCAATTCACGG+TGG | 0.783407 | 5_4:-40785710 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTAATGTATGATATTTA+TGG | - | chr5_4:40785130-40785149 | None:intergenic | 15.0% |
!! | AATAAAAAAAAAACATACCA+AGG | - | chr5_4:40785269-40785288 | None:intergenic | 15.0% |
!! | AATGTAATGTATGATATTTA+TGG | - | chr5_4:40785130-40785149 | None:intergenic | 15.0% |
!! | AATAAAAAAAAAACATACCA+AGG | - | chr5_4:40785269-40785288 | None:intergenic | 15.0% |
!!! | TGCAAAATTTTAATGGTAAT+GGG | - | chr5_4:40785182-40785201 | None:intergenic | 20.0% |
!!! | ATGCAAAATTTTAATGGTAA+TGG | - | chr5_4:40785183-40785202 | None:intergenic | 20.0% |
!!! | AGAGAAATGCAAAATTTTAA+TGG | - | chr5_4:40785189-40785208 | None:intergenic | 20.0% |
!! | ATAAAGAATCAGAGAAAATT+TGG | - | chr5_4:40785367-40785386 | None:intergenic | 20.0% |
!! | ATTTGTCATAAGTTTAGATT+TGG | + | chr5_4:40785629-40785648 | Msa0850940:CDS | 20.0% |
!! | TTAATATGATCAACTACATT+AGG | - | chr5_4:40785939-40785958 | None:intergenic | 20.0% |
!! | ATGTAGTTGATCATATTAAA+TGG | + | chr5_4:40785940-40785959 | Msa0850940:intron | 20.0% |
!!! | TGCAAAATTTTAATGGTAAT+GGG | - | chr5_4:40785182-40785201 | None:intergenic | 20.0% |
!!! | ATGCAAAATTTTAATGGTAA+TGG | - | chr5_4:40785183-40785202 | None:intergenic | 20.0% |
!!! | AGAGAAATGCAAAATTTTAA+TGG | - | chr5_4:40785189-40785208 | None:intergenic | 20.0% |
!! | ATAAAGAATCAGAGAAAATT+TGG | - | chr5_4:40785367-40785386 | None:intergenic | 20.0% |
!! | ATTTGTCATAAGTTTAGATT+TGG | + | chr5_4:40785629-40785648 | Msa0850940:CDS | 20.0% |
!! | TTAATATGATCAACTACATT+AGG | - | chr5_4:40785939-40785958 | None:intergenic | 20.0% |
!! | ATGTAGTTGATCATATTAAA+TGG | + | chr5_4:40785940-40785959 | Msa0850940:intron | 20.0% |
! | TCCTTCTAATTTCAATTTCT+TGG | + | chr5_4:40785057-40785076 | Msa0850940:intron | 25.0% |
! | ACCAAGAAATTGAAATTAGA+AGG | - | chr5_4:40785061-40785080 | None:intergenic | 25.0% |
! | GCATTTGTAGTTTATACAAA+TGG | + | chr5_4:40785219-40785238 | Msa0850940:intron | 25.0% |
! | AAAGTCGTAACTACTAATAA+AGG | - | chr5_4:40785461-40785480 | None:intergenic | 25.0% |
!! | AATTTTGTAACTATGCTCTT+GGG | + | chr5_4:40785669-40785688 | Msa0850940:CDS | 25.0% |
! | TCCTTCTAATTTCAATTTCT+TGG | + | chr5_4:40785057-40785076 | Msa0850940:intron | 25.0% |
! | ACCAAGAAATTGAAATTAGA+AGG | - | chr5_4:40785061-40785080 | None:intergenic | 25.0% |
! | GCATTTGTAGTTTATACAAA+TGG | + | chr5_4:40785219-40785238 | Msa0850940:intron | 25.0% |
! | AAAGTCGTAACTACTAATAA+AGG | - | chr5_4:40785461-40785480 | None:intergenic | 25.0% |
!! | AATTTTGTAACTATGCTCTT+GGG | + | chr5_4:40785669-40785688 | Msa0850940:CDS | 25.0% |
ACCTACTAGAAAAACTGAAA+AGG | + | chr5_4:40784899-40784918 | Msa0850940:intron | 30.0% | |
! | TTATGGATTAACATACAGAC+TGG | - | chr5_4:40784964-40784983 | None:intergenic | 30.0% |
TATCCAAAATGAACCCTAAT+GGG | - | chr5_4:40785004-40785023 | None:intergenic | 30.0% | |
TTATCCAAAATGAACCCTAA+TGG | - | chr5_4:40785005-40785024 | None:intergenic | 30.0% | |
TCAATTTCTTGGTATGCAAA+TGG | + | chr5_4:40785068-40785087 | Msa0850940:intron | 30.0% | |
CAATTTCTTGGTATGCAAAT+GGG | + | chr5_4:40785069-40785088 | Msa0850940:intron | 30.0% | |
AATTTCTTGGTATGCAAATG+GGG | + | chr5_4:40785070-40785089 | Msa0850940:intron | 30.0% | |
CAACATTCATTGTATCCAAT+TGG | + | chr5_4:40785320-40785339 | Msa0850940:intron | 30.0% | |
GAATCAGAGAAAATTTGGAA+CGG | - | chr5_4:40785362-40785381 | None:intergenic | 30.0% | |
TCTTGTTCATTGGAAATTGA+GGG | - | chr5_4:40785517-40785536 | None:intergenic | 30.0% | |
TCAATTTCCAATGAACAAGA+GGG | + | chr5_4:40785517-40785536 | Msa0850940:CDS | 30.0% | |
! | TGCATTGGAATGATTGTTTT+CGG | - | chr5_4:40785552-40785571 | None:intergenic | 30.0% |
! | TTTCTTTGTTTGATGGAGAA+GGG | - | chr5_4:40785583-40785602 | None:intergenic | 30.0% |
! | ATTTCTTTGTTTGATGGAGA+AGG | - | chr5_4:40785584-40785603 | None:intergenic | 30.0% |
TCTCCATCAAACAAAGAAAT+AGG | + | chr5_4:40785584-40785603 | Msa0850940:CDS | 30.0% | |
! | ATGCCTATTTCTTTGTTTGA+TGG | - | chr5_4:40785590-40785609 | None:intergenic | 30.0% |
! | AGATTTGGTAATTGTTCGAA+AGG | + | chr5_4:40785644-40785663 | Msa0850940:CDS | 30.0% |
! | CAATTTTGTAACTATGCTCT+TGG | + | chr5_4:40785668-40785687 | Msa0850940:CDS | 30.0% |
! | ATTTTGTAACTATGCTCTTG+GGG | + | chr5_4:40785670-40785689 | Msa0850940:CDS | 30.0% |
! | ACAAGTGTAGTTTTCTTCAT+AGG | + | chr5_4:40785851-40785870 | Msa0850940:CDS | 30.0% |
! | CAAGTGTAGTTTTCTTCATA+GGG | + | chr5_4:40785852-40785871 | Msa0850940:CDS | 30.0% |
TATGATCAACTACATTAGGA+GGG | - | chr5_4:40785935-40785954 | None:intergenic | 30.0% | |
ATATGATCAACTACATTAGG+AGG | - | chr5_4:40785936-40785955 | None:intergenic | 30.0% | |
ACCTACTAGAAAAACTGAAA+AGG | + | chr5_4:40784899-40784918 | Msa0850940:intron | 30.0% | |
! | TTATGGATTAACATACAGAC+TGG | - | chr5_4:40784964-40784983 | None:intergenic | 30.0% |
TATCCAAAATGAACCCTAAT+GGG | - | chr5_4:40785004-40785023 | None:intergenic | 30.0% | |
TTATCCAAAATGAACCCTAA+TGG | - | chr5_4:40785005-40785024 | None:intergenic | 30.0% | |
TCAATTTCTTGGTATGCAAA+TGG | + | chr5_4:40785068-40785087 | Msa0850940:intron | 30.0% | |
CAATTTCTTGGTATGCAAAT+GGG | + | chr5_4:40785069-40785088 | Msa0850940:intron | 30.0% | |
AATTTCTTGGTATGCAAATG+GGG | + | chr5_4:40785070-40785089 | Msa0850940:intron | 30.0% | |
CAACATTCATTGTATCCAAT+TGG | + | chr5_4:40785320-40785339 | Msa0850940:intron | 30.0% | |
GAATCAGAGAAAATTTGGAA+CGG | - | chr5_4:40785362-40785381 | None:intergenic | 30.0% | |
TCTTGTTCATTGGAAATTGA+GGG | - | chr5_4:40785517-40785536 | None:intergenic | 30.0% | |
TCAATTTCCAATGAACAAGA+GGG | + | chr5_4:40785517-40785536 | Msa0850940:CDS | 30.0% | |
! | TGCATTGGAATGATTGTTTT+CGG | - | chr5_4:40785552-40785571 | None:intergenic | 30.0% |
! | TTTCTTTGTTTGATGGAGAA+GGG | - | chr5_4:40785583-40785602 | None:intergenic | 30.0% |
! | ATTTCTTTGTTTGATGGAGA+AGG | - | chr5_4:40785584-40785603 | None:intergenic | 30.0% |
TCTCCATCAAACAAAGAAAT+AGG | + | chr5_4:40785584-40785603 | Msa0850940:CDS | 30.0% | |
! | ATGCCTATTTCTTTGTTTGA+TGG | - | chr5_4:40785590-40785609 | None:intergenic | 30.0% |
! | AGATTTGGTAATTGTTCGAA+AGG | + | chr5_4:40785644-40785663 | Msa0850940:CDS | 30.0% |
! | CAATTTTGTAACTATGCTCT+TGG | + | chr5_4:40785668-40785687 | Msa0850940:CDS | 30.0% |
! | ATTTTGTAACTATGCTCTTG+GGG | + | chr5_4:40785670-40785689 | Msa0850940:CDS | 30.0% |
! | ACAAGTGTAGTTTTCTTCAT+AGG | + | chr5_4:40785851-40785870 | Msa0850940:CDS | 30.0% |
! | CAAGTGTAGTTTTCTTCATA+GGG | + | chr5_4:40785852-40785871 | Msa0850940:CDS | 30.0% |
TATGATCAACTACATTAGGA+GGG | - | chr5_4:40785935-40785954 | None:intergenic | 30.0% | |
ATATGATCAACTACATTAGG+AGG | - | chr5_4:40785936-40785955 | None:intergenic | 30.0% | |
CTTGTGAAATCTTGGTTTCA+TGG | - | chr5_4:40784669-40784688 | None:intergenic | 35.0% | |
CAAAAGGAGTTTGAGAAGTT+TGG | - | chr5_4:40784699-40784718 | None:intergenic | 35.0% | |
TAACAGATCTTGTTCCCATT+AGG | + | chr5_4:40784767-40784786 | Msa0850940:CDS | 35.0% | |
AACAGATCTTGTTCCCATTA+GGG | + | chr5_4:40784768-40784787 | Msa0850940:CDS | 35.0% | |
CAAGAAAAGGACCAATACAA+CGG | + | chr5_4:40784813-40784832 | Msa0850940:CDS | 35.0% | |
AGAGAGTTCATTACATGAGA+AGG | - | chr5_4:40784856-40784875 | None:intergenic | 35.0% | |
!! | GCCTTTTCAGTTTTTCTAGT+AGG | - | chr5_4:40784903-40784922 | None:intergenic | 35.0% |
TGAGGTTTCTTGACAATAAC+AGG | - | chr5_4:40784933-40784952 | None:intergenic | 35.0% | |
! | TACAGACTGGTCATAAAATG+AGG | - | chr5_4:40784951-40784970 | None:intergenic | 35.0% |
TGTTAATCCATAAGTCTGCA+AGG | + | chr5_4:40784971-40784990 | Msa0850940:intron | 35.0% | |
TATCCAATTGGATGTCACTA+AGG | + | chr5_4:40785332-40785351 | Msa0850940:intron | 35.0% | |
ATCCAATTGGATGTCACTAA+GGG | + | chr5_4:40785333-40785352 | Msa0850940:intron | 35.0% | |
GTCGTAACTACTAATAAAGG+AGG | - | chr5_4:40785458-40785477 | None:intergenic | 35.0% | |
TCACTTCAATGTTATCGTTG+CGG | - | chr5_4:40785493-40785512 | None:intergenic | 35.0% | |
CTCTTGTTCATTGGAAATTG+AGG | - | chr5_4:40785518-40785537 | None:intergenic | 35.0% | |
CTCAATTTCCAATGAACAAG+AGG | + | chr5_4:40785516-40785535 | Msa0850940:CDS | 35.0% | |
ATTCTTACCCTCTTGTTCAT+TGG | - | chr5_4:40785527-40785546 | None:intergenic | 35.0% | |
TCAGAGAATCATTCACAAGA+TGG | + | chr5_4:40785783-40785802 | Msa0850940:CDS | 35.0% | |
CTCACCATTGTAATACTTCT+CGG | - | chr5_4:40785815-40785834 | None:intergenic | 35.0% | |
AAACTACACTTGTCACCATA+AGG | - | chr5_4:40785844-40785863 | None:intergenic | 35.0% | |
ATGATCAACTACATTAGGAG+GGG | - | chr5_4:40785934-40785953 | None:intergenic | 35.0% | |
! | TTTTCAAATTGCTGCCATAG+CGG | + | chr5_4:40786095-40786114 | Msa0850940:intron | 35.0% |
ATAAAAGCCATTGTAGCCTA+TGG | - | chr5_4:40786152-40786171 | None:intergenic | 35.0% | |
CTTGTGAAATCTTGGTTTCA+TGG | - | chr5_4:40784669-40784688 | None:intergenic | 35.0% | |
CAAAAGGAGTTTGAGAAGTT+TGG | - | chr5_4:40784699-40784718 | None:intergenic | 35.0% | |
TAACAGATCTTGTTCCCATT+AGG | + | chr5_4:40784767-40784786 | Msa0850940:CDS | 35.0% | |
AACAGATCTTGTTCCCATTA+GGG | + | chr5_4:40784768-40784787 | Msa0850940:CDS | 35.0% | |
CAAGAAAAGGACCAATACAA+CGG | + | chr5_4:40784813-40784832 | Msa0850940:CDS | 35.0% | |
AGAGAGTTCATTACATGAGA+AGG | - | chr5_4:40784856-40784875 | None:intergenic | 35.0% | |
!! | GCCTTTTCAGTTTTTCTAGT+AGG | - | chr5_4:40784903-40784922 | None:intergenic | 35.0% |
TGAGGTTTCTTGACAATAAC+AGG | - | chr5_4:40784933-40784952 | None:intergenic | 35.0% | |
! | TACAGACTGGTCATAAAATG+AGG | - | chr5_4:40784951-40784970 | None:intergenic | 35.0% |
TGTTAATCCATAAGTCTGCA+AGG | + | chr5_4:40784971-40784990 | Msa0850940:intron | 35.0% | |
TATCCAATTGGATGTCACTA+AGG | + | chr5_4:40785332-40785351 | Msa0850940:intron | 35.0% | |
ATCCAATTGGATGTCACTAA+GGG | + | chr5_4:40785333-40785352 | Msa0850940:intron | 35.0% | |
GTCGTAACTACTAATAAAGG+AGG | - | chr5_4:40785458-40785477 | None:intergenic | 35.0% | |
TCACTTCAATGTTATCGTTG+CGG | - | chr5_4:40785493-40785512 | None:intergenic | 35.0% | |
CTCTTGTTCATTGGAAATTG+AGG | - | chr5_4:40785518-40785537 | None:intergenic | 35.0% | |
CTCAATTTCCAATGAACAAG+AGG | + | chr5_4:40785516-40785535 | Msa0850940:CDS | 35.0% | |
ATTCTTACCCTCTTGTTCAT+TGG | - | chr5_4:40785527-40785546 | None:intergenic | 35.0% | |
TCAGAGAATCATTCACAAGA+TGG | + | chr5_4:40785783-40785802 | Msa0850940:CDS | 35.0% | |
CTCACCATTGTAATACTTCT+CGG | - | chr5_4:40785815-40785834 | None:intergenic | 35.0% | |
AAACTACACTTGTCACCATA+AGG | - | chr5_4:40785844-40785863 | None:intergenic | 35.0% | |
ATGATCAACTACATTAGGAG+GGG | - | chr5_4:40785934-40785953 | None:intergenic | 35.0% | |
! | TTTTCAAATTGCTGCCATAG+CGG | + | chr5_4:40786095-40786114 | Msa0850940:intron | 35.0% |
ATAAAAGCCATTGTAGCCTA+TGG | - | chr5_4:40786152-40786171 | None:intergenic | 35.0% | |
GTCAGATGCTTGTGAAATCT+TGG | - | chr5_4:40784677-40784696 | None:intergenic | 40.0% | |
!! | TCTTTTGCTTTGGATGGTGT+AGG | - | chr5_4:40784730-40784749 | None:intergenic | 40.0% |
ACACCATCCAAAGCAAAAGA+CGG | + | chr5_4:40784730-40784749 | Msa0850940:CDS | 40.0% | |
! | TGATGATCCGTCTTTTGCTT+TGG | - | chr5_4:40784740-40784759 | None:intergenic | 40.0% |
TGGCTTGAAACAACCCTAAT+GGG | - | chr5_4:40784784-40784803 | None:intergenic | 40.0% | |
ATGGCTTGAAACAACCCTAA+TGG | - | chr5_4:40784785-40784804 | None:intergenic | 40.0% | |
!! | GTATTGGTCCTTTTCTTGGT+GGG | - | chr5_4:40784811-40784830 | None:intergenic | 40.0% |
!! | TGTATTGGTCCTTTTCTTGG+TGG | - | chr5_4:40784812-40784831 | None:intergenic | 40.0% |
!! | CGTTGTATTGGTCCTTTTCT+TGG | - | chr5_4:40784815-40784834 | None:intergenic | 40.0% |
! | CATCCCATTAGGGTTCATTT+TGG | + | chr5_4:40784998-40785017 | Msa0850940:intron | 40.0% |
! | TGAAGTAAGGGTGTGCAAAT+GGG | - | chr5_4:40785028-40785047 | None:intergenic | 40.0% |
! | TTGAAGTAAGGGTGTGCAAA+TGG | - | chr5_4:40785029-40785048 | None:intergenic | 40.0% |
ATTTGCACACCCTTACTTCA+AGG | + | chr5_4:40785028-40785047 | Msa0850940:intron | 40.0% | |
! | TCTTCCTCTTTTATGATGCC+AGG | + | chr5_4:40785094-40785113 | Msa0850940:intron | 40.0% |
! | CTTCCTCTTTTATGATGCCA+GGG | + | chr5_4:40785095-40785114 | Msa0850940:intron | 40.0% |
!! | TGAGTTGCTGTTTACAACCT+TGG | + | chr5_4:40785249-40785268 | Msa0850940:intron | 40.0% |
ATCCCTTAGTGACATCCAAT+TGG | - | chr5_4:40785338-40785357 | None:intergenic | 40.0% | |
ATGTTATCGTTGCGGTTGTT+TGG | - | chr5_4:40785485-40785504 | None:intergenic | 40.0% | |
AACTAGCTCCTTCCAATTCA+CGG | - | chr5_4:40785716-40785735 | None:intergenic | 40.0% | |
!! | CTCTCCGAGAAGTATTACAA+TGG | + | chr5_4:40785808-40785827 | Msa0850940:CDS | 40.0% |
!! | CGAGAAGTATTACAATGGTG+AGG | + | chr5_4:40785813-40785832 | Msa0850940:CDS | 40.0% |
AATGGTGAGGAATGTCCTTA+TGG | + | chr5_4:40785826-40785845 | Msa0850940:CDS | 40.0% | |
! | GTAGTTTTCTTCATAGGGTG+TGG | + | chr5_4:40785857-40785876 | Msa0850940:intron | 40.0% |
ACAATTTCACCCCTGCTTAT+AGG | + | chr5_4:40785966-40785985 | Msa0850940:intron | 40.0% | |
AATAATCCGGCATACAAGCA+TGG | - | chr5_4:40786206-40786225 | None:intergenic | 40.0% | |
ATGCTTGTATGCCGGATTAT+TGG | + | chr5_4:40786205-40786224 | Msa0850940:CDS | 40.0% | |
GTCAGATGCTTGTGAAATCT+TGG | - | chr5_4:40784677-40784696 | None:intergenic | 40.0% | |
!! | TCTTTTGCTTTGGATGGTGT+AGG | - | chr5_4:40784730-40784749 | None:intergenic | 40.0% |
ACACCATCCAAAGCAAAAGA+CGG | + | chr5_4:40784730-40784749 | Msa0850940:CDS | 40.0% | |
! | TGATGATCCGTCTTTTGCTT+TGG | - | chr5_4:40784740-40784759 | None:intergenic | 40.0% |
TGGCTTGAAACAACCCTAAT+GGG | - | chr5_4:40784784-40784803 | None:intergenic | 40.0% | |
ATGGCTTGAAACAACCCTAA+TGG | - | chr5_4:40784785-40784804 | None:intergenic | 40.0% | |
!! | GTATTGGTCCTTTTCTTGGT+GGG | - | chr5_4:40784811-40784830 | None:intergenic | 40.0% |
!! | TGTATTGGTCCTTTTCTTGG+TGG | - | chr5_4:40784812-40784831 | None:intergenic | 40.0% |
!! | CGTTGTATTGGTCCTTTTCT+TGG | - | chr5_4:40784815-40784834 | None:intergenic | 40.0% |
! | CATCCCATTAGGGTTCATTT+TGG | + | chr5_4:40784998-40785017 | Msa0850940:intron | 40.0% |
! | TGAAGTAAGGGTGTGCAAAT+GGG | - | chr5_4:40785028-40785047 | None:intergenic | 40.0% |
! | TTGAAGTAAGGGTGTGCAAA+TGG | - | chr5_4:40785029-40785048 | None:intergenic | 40.0% |
ATTTGCACACCCTTACTTCA+AGG | + | chr5_4:40785028-40785047 | Msa0850940:intron | 40.0% | |
! | TCTTCCTCTTTTATGATGCC+AGG | + | chr5_4:40785094-40785113 | Msa0850940:intron | 40.0% |
! | CTTCCTCTTTTATGATGCCA+GGG | + | chr5_4:40785095-40785114 | Msa0850940:intron | 40.0% |
!! | TGAGTTGCTGTTTACAACCT+TGG | + | chr5_4:40785249-40785268 | Msa0850940:intron | 40.0% |
ATCCCTTAGTGACATCCAAT+TGG | - | chr5_4:40785338-40785357 | None:intergenic | 40.0% | |
ATGTTATCGTTGCGGTTGTT+TGG | - | chr5_4:40785485-40785504 | None:intergenic | 40.0% | |
AACTAGCTCCTTCCAATTCA+CGG | - | chr5_4:40785716-40785735 | None:intergenic | 40.0% | |
!! | CTCTCCGAGAAGTATTACAA+TGG | + | chr5_4:40785808-40785827 | Msa0850940:CDS | 40.0% |
!! | CGAGAAGTATTACAATGGTG+AGG | + | chr5_4:40785813-40785832 | Msa0850940:CDS | 40.0% |
AATGGTGAGGAATGTCCTTA+TGG | + | chr5_4:40785826-40785845 | Msa0850940:CDS | 40.0% | |
! | GTAGTTTTCTTCATAGGGTG+TGG | + | chr5_4:40785857-40785876 | Msa0850940:intron | 40.0% |
ACAATTTCACCCCTGCTTAT+AGG | + | chr5_4:40785966-40785985 | Msa0850940:intron | 40.0% | |
AATAATCCGGCATACAAGCA+TGG | - | chr5_4:40786206-40786225 | None:intergenic | 40.0% | |
ATGCTTGTATGCCGGATTAT+TGG | + | chr5_4:40786205-40786224 | Msa0850940:CDS | 40.0% | |
GGTGTAGGAAGTGACACAAA+AGG | - | chr5_4:40784715-40784734 | None:intergenic | 45.0% | |
!! | GATCCGTCTTTTGCTTTGGA+TGG | - | chr5_4:40784736-40784755 | None:intergenic | 45.0% |
AGCAAAAGACGGATCATCAG+AGG | + | chr5_4:40784741-40784760 | Msa0850940:CDS | 45.0% | |
! | TCCTTTTCTTGGTGGGAACA+TGG | - | chr5_4:40784804-40784823 | None:intergenic | 45.0% |
CAATACAACGGCTGCGAAAA+GGG | + | chr5_4:40784825-40784844 | Msa0850940:CDS | 45.0% | |
ATGCGTACCTTGCAGACTTA+TGG | - | chr5_4:40784981-40785000 | None:intergenic | 45.0% | |
GGATGCGTACCTTGAAGTAA+GGG | - | chr5_4:40785040-40785059 | None:intergenic | 45.0% | |
AGGATGCGTACCTTGAAGTA+AGG | - | chr5_4:40785041-40785060 | None:intergenic | 45.0% | |
AGACCCTGGCATCATAAAAG+AGG | - | chr5_4:40785101-40785120 | None:intergenic | 45.0% | |
! | ATTTATGGTGACGAAGACCC+TGG | - | chr5_4:40785115-40785134 | None:intergenic | 45.0% |
! | AGAAGGGCGTATGAATGCAT+TGG | - | chr5_4:40785567-40785586 | None:intergenic | 45.0% |
TTGTAACTATGCTCTTGGGG+TGG | + | chr5_4:40785673-40785692 | Msa0850940:intron | 45.0% | |
CCAACTTTGCCTATAAGCAG+GGG | - | chr5_4:40785978-40785997 | None:intergenic | 45.0% | |
GCCAACTTTGCCTATAAGCA+GGG | - | chr5_4:40785979-40785998 | None:intergenic | 45.0% | |
AGCCAACTTTGCCTATAAGC+AGG | - | chr5_4:40785980-40785999 | None:intergenic | 45.0% | |
!! | GTTGGCTCTGAATGCTGATT+TGG | + | chr5_4:40785993-40786012 | Msa0850940:intron | 45.0% |
! | ATCCAGTGTGTTTCTGCCAT+AGG | + | chr5_4:40786172-40786191 | Msa0850940:CDS | 45.0% |
ACAACTCCATGCTTGTATGC+CGG | + | chr5_4:40786197-40786216 | Msa0850940:CDS | 45.0% | |
GGTGTAGGAAGTGACACAAA+AGG | - | chr5_4:40784715-40784734 | None:intergenic | 45.0% | |
!! | GATCCGTCTTTTGCTTTGGA+TGG | - | chr5_4:40784736-40784755 | None:intergenic | 45.0% |
AGCAAAAGACGGATCATCAG+AGG | + | chr5_4:40784741-40784760 | Msa0850940:CDS | 45.0% | |
! | TCCTTTTCTTGGTGGGAACA+TGG | - | chr5_4:40784804-40784823 | None:intergenic | 45.0% |
CAATACAACGGCTGCGAAAA+GGG | + | chr5_4:40784825-40784844 | Msa0850940:CDS | 45.0% | |
ATGCGTACCTTGCAGACTTA+TGG | - | chr5_4:40784981-40785000 | None:intergenic | 45.0% | |
GGATGCGTACCTTGAAGTAA+GGG | - | chr5_4:40785040-40785059 | None:intergenic | 45.0% | |
AGGATGCGTACCTTGAAGTA+AGG | - | chr5_4:40785041-40785060 | None:intergenic | 45.0% | |
AGACCCTGGCATCATAAAAG+AGG | - | chr5_4:40785101-40785120 | None:intergenic | 45.0% | |
! | ATTTATGGTGACGAAGACCC+TGG | - | chr5_4:40785115-40785134 | None:intergenic | 45.0% |
! | AGAAGGGCGTATGAATGCAT+TGG | - | chr5_4:40785567-40785586 | None:intergenic | 45.0% |
TTGTAACTATGCTCTTGGGG+TGG | + | chr5_4:40785673-40785692 | Msa0850940:intron | 45.0% | |
CCAACTTTGCCTATAAGCAG+GGG | - | chr5_4:40785978-40785997 | None:intergenic | 45.0% | |
GCCAACTTTGCCTATAAGCA+GGG | - | chr5_4:40785979-40785998 | None:intergenic | 45.0% | |
AGCCAACTTTGCCTATAAGC+AGG | - | chr5_4:40785980-40785999 | None:intergenic | 45.0% | |
!! | GTTGGCTCTGAATGCTGATT+TGG | + | chr5_4:40785993-40786012 | Msa0850940:intron | 45.0% |
! | ATCCAGTGTGTTTCTGCCAT+AGG | + | chr5_4:40786172-40786191 | Msa0850940:CDS | 45.0% |
ACAACTCCATGCTTGTATGC+CGG | + | chr5_4:40786197-40786216 | Msa0850940:CDS | 45.0% | |
GCCATGTTCCCACCAAGAAA+AGG | + | chr5_4:40784800-40784819 | Msa0850940:CDS | 50.0% | |
! | CCTTTTCGCAGCCGTTGTAT+TGG | - | chr5_4:40784827-40784846 | None:intergenic | 50.0% |
CCAATACAACGGCTGCGAAA+AGG | + | chr5_4:40784824-40784843 | Msa0850940:CDS | 50.0% | |
TGCAAGGTACGCATCCCATT+AGG | + | chr5_4:40784987-40785006 | Msa0850940:intron | 50.0% | |
GCAAGGTACGCATCCCATTA+GGG | + | chr5_4:40784988-40785007 | Msa0850940:intron | 50.0% | |
CTCTTGGGGTGGATGAGATA+AGG | + | chr5_4:40785684-40785703 | Msa0850940:intron | 50.0% | |
ATAAGGCAGCCACCGTGAAT+TGG | + | chr5_4:40785701-40785720 | Msa0850940:intron | 50.0% | |
TAGCTCCTTCCAATTCACGG+TGG | - | chr5_4:40785713-40785732 | None:intergenic | 50.0% | |
CCCCTGCTTATAGGCAAAGT+TGG | + | chr5_4:40785975-40785994 | Msa0850940:intron | 50.0% | |
! | GATTTTGTGCCAGCAGCCAT+AGG | + | chr5_4:40786133-40786152 | Msa0850940:CDS | 50.0% |
AAGCATGGAGTTGTGGCCTA+TGG | - | chr5_4:40786191-40786210 | None:intergenic | 50.0% | |
GGCATACAAGCATGGAGTTG+TGG | - | chr5_4:40786198-40786217 | None:intergenic | 50.0% | |
ACGGAGGGTAGCCAATAATC+CGG | - | chr5_4:40786219-40786238 | None:intergenic | 50.0% | |
GCCATGTTCCCACCAAGAAA+AGG | + | chr5_4:40784800-40784819 | Msa0850940:CDS | 50.0% | |
! | CCTTTTCGCAGCCGTTGTAT+TGG | - | chr5_4:40784827-40784846 | None:intergenic | 50.0% |
CCAATACAACGGCTGCGAAA+AGG | + | chr5_4:40784824-40784843 | Msa0850940:CDS | 50.0% | |
TGCAAGGTACGCATCCCATT+AGG | + | chr5_4:40784987-40785006 | Msa0850940:intron | 50.0% | |
GCAAGGTACGCATCCCATTA+GGG | + | chr5_4:40784988-40785007 | Msa0850940:intron | 50.0% | |
CTCTTGGGGTGGATGAGATA+AGG | + | chr5_4:40785684-40785703 | Msa0850940:intron | 50.0% | |
ATAAGGCAGCCACCGTGAAT+TGG | + | chr5_4:40785701-40785720 | Msa0850940:intron | 50.0% | |
TAGCTCCTTCCAATTCACGG+TGG | - | chr5_4:40785713-40785732 | None:intergenic | 50.0% | |
CCCCTGCTTATAGGCAAAGT+TGG | + | chr5_4:40785975-40785994 | Msa0850940:intron | 50.0% | |
! | GATTTTGTGCCAGCAGCCAT+AGG | + | chr5_4:40786133-40786152 | Msa0850940:CDS | 50.0% |
AAGCATGGAGTTGTGGCCTA+TGG | - | chr5_4:40786191-40786210 | None:intergenic | 50.0% | |
GGCATACAAGCATGGAGTTG+TGG | - | chr5_4:40786198-40786217 | None:intergenic | 50.0% | |
ACGGAGGGTAGCCAATAATC+CGG | - | chr5_4:40786219-40786238 | None:intergenic | 50.0% | |
GCTAGTTAGTCCTCGCAACG+AGG | + | chr5_4:40785729-40785748 | Msa0850940:CDS | 55.0% | |
TGTAGTCGTTCCTCGTTGCG+AGG | - | chr5_4:40785742-40785761 | None:intergenic | 55.0% | |
CAACGAGGAACGACTACAGC+TGG | + | chr5_4:40785744-40785763 | Msa0850940:CDS | 55.0% | |
GCACAAAATCCTCCACGCCT+TGG | - | chr5_4:40786123-40786142 | None:intergenic | 55.0% | |
CCATTGTAGCCTATGGCTGC+TGG | - | chr5_4:40786145-40786164 | None:intergenic | 55.0% | |
CCAGCAGCCATAGGCTACAA+TGG | + | chr5_4:40786142-40786161 | Msa0850940:CDS | 55.0% | |
GGCCTATGGCAGAAACACAC+TGG | - | chr5_4:40786177-40786196 | None:intergenic | 55.0% | |
GCTAGTTAGTCCTCGCAACG+AGG | + | chr5_4:40785729-40785748 | Msa0850940:CDS | 55.0% | |
TGTAGTCGTTCCTCGTTGCG+AGG | - | chr5_4:40785742-40785761 | None:intergenic | 55.0% | |
CAACGAGGAACGACTACAGC+TGG | + | chr5_4:40785744-40785763 | Msa0850940:CDS | 55.0% | |
GCACAAAATCCTCCACGCCT+TGG | - | chr5_4:40786123-40786142 | None:intergenic | 55.0% | |
CCATTGTAGCCTATGGCTGC+TGG | - | chr5_4:40786145-40786164 | None:intergenic | 55.0% | |
CCAGCAGCCATAGGCTACAA+TGG | + | chr5_4:40786142-40786161 | Msa0850940:CDS | 55.0% | |
GGCCTATGGCAGAAACACAC+TGG | - | chr5_4:40786177-40786196 | None:intergenic | 55.0% | |
GGCAGCCACCGTGAATTGGA+AGG | + | chr5_4:40785705-40785724 | Msa0850940:intron | 60.0% | |
TTGCTGCCATAGCGGCACCA+AGG | + | chr5_4:40786103-40786122 | Msa0850940:intron | 60.0% | |
GGCAGCCACCGTGAATTGGA+AGG | + | chr5_4:40785705-40785724 | Msa0850940:intron | 60.0% | |
TTGCTGCCATAGCGGCACCA+AGG | + | chr5_4:40786103-40786122 | Msa0850940:intron | 60.0% | |
!! | TCCACGCCTTGGTGCCGCTA+TGG | - | chr5_4:40786112-40786131 | None:intergenic | 65.0% |
ATAGCGGCACCAAGGCGTGG+AGG | + | chr5_4:40786111-40786130 | Msa0850940:intron | 65.0% | |
!! | TCCACGCCTTGGTGCCGCTA+TGG | - | chr5_4:40786112-40786131 | None:intergenic | 65.0% |
ATAGCGGCACCAAGGCGTGG+AGG | + | chr5_4:40786111-40786130 | Msa0850940:intron | 65.0% | |
GCCATAGCGGCACCAAGGCG+TGG | + | chr5_4:40786108-40786127 | Msa0850940:intron | 70.0% | |
GCCATAGCGGCACCAAGGCG+TGG | + | chr5_4:40786108-40786127 | Msa0850940:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 40784649 | 40786240 | 40784649 | ID=Msa0850940;Name=Msa0850940 |
chr5_4 | mRNA | 40784649 | 40786240 | 40784649 | ID=Msa0850940-mRNA-1;Parent=Msa0850940;Name=Msa0850940-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.4|0.75|0.8|5|0|244 |
chr5_4 | exon | 40784649 | 40784861 | 40784649 | ID=Msa0850940-mRNA-1:exon:12876;Parent=Msa0850940-mRNA-1 |
chr5_4 | exon | 40785296 | 40785302 | 40785296 | ID=Msa0850940-mRNA-1:exon:12877;Parent=Msa0850940-mRNA-1 |
chr5_4 | exon | 40785471 | 40785691 | 40785471 | ID=Msa0850940-mRNA-1:exon:12878;Parent=Msa0850940-mRNA-1 |
chr5_4 | exon | 40785706 | 40785873 | 40785706 | ID=Msa0850940-mRNA-1:exon:12879;Parent=Msa0850940-mRNA-1 |
chr5_4 | exon | 40786115 | 40786240 | 40786115 | ID=Msa0850940-mRNA-1:exon:12880;Parent=Msa0850940-mRNA-1 |
chr5_4 | CDS | 40784649 | 40784861 | 40784649 | ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1 |
chr5_4 | CDS | 40785296 | 40785302 | 40785296 | ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1 |
chr5_4 | CDS | 40785471 | 40785691 | 40785471 | ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1 |
chr5_4 | CDS | 40785706 | 40785873 | 40785706 | ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1 |
chr5_4 | CDS | 40786115 | 40786240 | 40786115 | ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1 |
Gene Sequence |
Protein sequence |