AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0850940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850940 MtrunA17_Chr3g0098251 63.636 121 37 2 91 206 3 121 3.06e-50 163
Msa0850940 MtrunA17_Chr4g0063401 51.634 153 47 5 77 202 17 169 3.08e-39 136
Msa0850940 MtrunA17_Chr4g0063361 45.752 153 55 4 77 202 17 168 1.06e-31 116
Msa0850940 MtrunA17_Chr4g0063391 51.376 109 41 3 105 202 33 140 9.88e-27 103
Msa0850940 MtrunA17_Chr4g0063371 39.437 142 66 4 76 202 2 138 3.89e-21 88.6
Msa0850940 MtrunA17_Chr8g0360671 56.923 65 21 2 144 203 41 103 5.95e-17 75.9
Msa0850940 MtrunA17_Chr8g0366501 32.520 123 62 2 116 217 86 208 2.17e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850940 AT3G19360.1 38.983 118 48 3 109 202 91 208 1.11e-18 84.3
Msa0850940 AT3G19360.2 38.983 118 48 3 109 202 91 208 1.11e-18 84.3
Msa0850940 AT1G32360.1 35.398 113 47 2 116 202 85 197 2.38e-11 63.2

Find 59 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGGAGTTTGAGAAGTT+TGG 0.274477 5_4:-40784696 None:intergenic
ATGCCTATTTCTTTGTTTGA+TGG 0.278931 5_4:-40785587 None:intergenic
TCTCCATCAAACAAAGAAAT+AGG 0.289126 5_4:+40785584 Msa0850940:CDS
AACAGATCTTGTTCCCATTA+GGG 0.307940 5_4:+40784768 Msa0850940:CDS
ATGCTTGTATGCCGGATTAT+TGG 0.312159 5_4:+40786205 Msa0850940:CDS
CTTGTGAAATCTTGGTTTCA+TGG 0.317941 5_4:-40784666 None:intergenic
TAACAGATCTTGTTCCCATT+AGG 0.329042 5_4:+40784767 Msa0850940:CDS
ATTCTTACCCTCTTGTTCAT+TGG 0.332135 5_4:-40785524 None:intergenic
CTCACCATTGTAATACTTCT+CGG 0.344652 5_4:-40785812 None:intergenic
ATTTGTCATAAGTTTAGATT+TGG 0.368220 5_4:+40785629 Msa0850940:CDS
CTCTTGTTCATTGGAAATTG+AGG 0.372663 5_4:-40785515 None:intergenic
GTCAGATGCTTGTGAAATCT+TGG 0.384268 5_4:-40784674 None:intergenic
ATGGCTTGAAACAACCCTAA+TGG 0.387771 5_4:-40784782 None:intergenic
ATAAGGCAGCCACCGTGAAT+TGG 0.397681 5_4:+40785701 Msa0850940:intron
TGGCTTGAAACAACCCTAAT+GGG 0.399086 5_4:-40784781 None:intergenic
ATGTTATCGTTGCGGTTGTT+TGG 0.404565 5_4:-40785482 None:intergenic
CCAATACAACGGCTGCGAAA+AGG 0.408959 5_4:+40784824 Msa0850940:CDS
CAATACAACGGCTGCGAAAA+GGG 0.431504 5_4:+40784825 Msa0850940:CDS
CTCAATTTCCAATGAACAAG+AGG 0.448816 5_4:+40785516 Msa0850940:CDS
AATGGTGAGGAATGTCCTTA+TGG 0.456697 5_4:+40785826 Msa0850940:CDS
TCTTGTTCATTGGAAATTGA+GGG 0.459679 5_4:-40785514 None:intergenic
ATTTCTTTGTTTGATGGAGA+AGG 0.470948 5_4:-40785581 None:intergenic
AAACTACACTTGTCACCATA+AGG 0.480255 5_4:-40785841 None:intergenic
CCATTGTAGCCTATGGCTGC+TGG 0.486648 5_4:-40786142 None:intergenic
AAGCATGGAGTTGTGGCCTA+TGG 0.492762 5_4:-40786188 None:intergenic
AACTAGCTCCTTCCAATTCA+CGG 0.494125 5_4:-40785713 None:intergenic
ATAAAAGCCATTGTAGCCTA+TGG 0.511831 5_4:-40786149 None:intergenic
TTTCTTTGTTTGATGGAGAA+GGG 0.512285 5_4:-40785580 None:intergenic
GCCATAGCGGCACCAAGGCG+TGG 0.513137 5_4:+40786108 Msa0850940:intron
GCCATGTTCCCACCAAGAAA+AGG 0.519256 5_4:+40784800 Msa0850940:CDS
GCACAAAATCCTCCACGCCT+TGG 0.521458 5_4:-40786120 None:intergenic
CAACGAGGAACGACTACAGC+TGG 0.537664 5_4:+40785744 Msa0850940:CDS
AGATTTGGTAATTGTTCGAA+AGG 0.541030 5_4:+40785644 Msa0850940:CDS
AGAGAGTTCATTACATGAGA+AGG 0.541237 5_4:-40784853 None:intergenic
ATCCAGTGTGTTTCTGCCAT+AGG 0.556468 5_4:+40786172 Msa0850940:CDS
ACGGAGGGTAGCCAATAATC+CGG 0.562607 5_4:-40786216 None:intergenic
ACAACTCCATGCTTGTATGC+CGG 0.564483 5_4:+40786197 Msa0850940:CDS
TCAGAGAATCATTCACAAGA+TGG 0.566966 5_4:+40785783 Msa0850940:CDS
AGAAGGGCGTATGAATGCAT+TGG 0.569393 5_4:-40785564 None:intergenic
TCACTTCAATGTTATCGTTG+CGG 0.571554 5_4:-40785490 None:intergenic
GGCATACAAGCATGGAGTTG+TGG 0.574551 5_4:-40786195 None:intergenic
CCAGCAGCCATAGGCTACAA+TGG 0.578727 5_4:+40786142 Msa0850940:CDS
GGTGTAGGAAGTGACACAAA+AGG 0.592126 5_4:-40784712 None:intergenic
AATAATCCGGCATACAAGCA+TGG 0.596755 5_4:-40786203 None:intergenic
GGCAGCCACCGTGAATTGGA+AGG 0.607378 5_4:+40785705 Msa0850940:intron
GGCCTATGGCAGAAACACAC+TGG 0.609914 5_4:-40786174 None:intergenic
AGCAAAAGACGGATCATCAG+AGG 0.611904 5_4:+40784741 Msa0850940:CDS
AAGTGGAAGGCAGGTTACGG+AGG 0.624445 5_4:-40786232 None:intergenic
TGTAGTCGTTCCTCGTTGCG+AGG 0.631526 5_4:-40785739 None:intergenic
TTGCTGCCATAGCGGCACCA+AGG 0.631619 5_4:+40786103 Msa0850940:intron
AGTGGAAGGCAGGTTACGGA+GGG 0.631984 5_4:-40786231 None:intergenic
TCAATTTCCAATGAACAAGA+GGG 0.637810 5_4:+40785517 Msa0850940:CDS
CGAGAAGTATTACAATGGTG+AGG 0.652954 5_4:+40785813 Msa0850940:CDS
ACACCATCCAAAGCAAAAGA+CGG 0.654937 5_4:+40784730 Msa0850940:CDS
CTCTCCGAGAAGTATTACAA+TGG 0.666265 5_4:+40785808 Msa0850940:CDS
ATAGCGGCACCAAGGCGTGG+AGG 0.667840 5_4:+40786111 Msa0850940:intron
CAAGAAAAGGACCAATACAA+CGG 0.699937 5_4:+40784813 Msa0850940:CDS
GCTAGTTAGTCCTCGCAACG+AGG 0.721526 5_4:+40785729 Msa0850940:CDS
TAGCTCCTTCCAATTCACGG+TGG 0.783407 5_4:-40785710 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTAATGTATGATATTTA+TGG - chr5_4:40785130-40785149 None:intergenic 15.0%
!! AATAAAAAAAAAACATACCA+AGG - chr5_4:40785269-40785288 None:intergenic 15.0%
!! AATGTAATGTATGATATTTA+TGG - chr5_4:40785130-40785149 None:intergenic 15.0%
!! AATAAAAAAAAAACATACCA+AGG - chr5_4:40785269-40785288 None:intergenic 15.0%
!!! TGCAAAATTTTAATGGTAAT+GGG - chr5_4:40785182-40785201 None:intergenic 20.0%
!!! ATGCAAAATTTTAATGGTAA+TGG - chr5_4:40785183-40785202 None:intergenic 20.0%
!!! AGAGAAATGCAAAATTTTAA+TGG - chr5_4:40785189-40785208 None:intergenic 20.0%
!! ATAAAGAATCAGAGAAAATT+TGG - chr5_4:40785367-40785386 None:intergenic 20.0%
!! ATTTGTCATAAGTTTAGATT+TGG + chr5_4:40785629-40785648 Msa0850940:CDS 20.0%
!! TTAATATGATCAACTACATT+AGG - chr5_4:40785939-40785958 None:intergenic 20.0%
!! ATGTAGTTGATCATATTAAA+TGG + chr5_4:40785940-40785959 Msa0850940:intron 20.0%
!!! TGCAAAATTTTAATGGTAAT+GGG - chr5_4:40785182-40785201 None:intergenic 20.0%
!!! ATGCAAAATTTTAATGGTAA+TGG - chr5_4:40785183-40785202 None:intergenic 20.0%
!!! AGAGAAATGCAAAATTTTAA+TGG - chr5_4:40785189-40785208 None:intergenic 20.0%
!! ATAAAGAATCAGAGAAAATT+TGG - chr5_4:40785367-40785386 None:intergenic 20.0%
!! ATTTGTCATAAGTTTAGATT+TGG + chr5_4:40785629-40785648 Msa0850940:CDS 20.0%
!! TTAATATGATCAACTACATT+AGG - chr5_4:40785939-40785958 None:intergenic 20.0%
!! ATGTAGTTGATCATATTAAA+TGG + chr5_4:40785940-40785959 Msa0850940:intron 20.0%
! TCCTTCTAATTTCAATTTCT+TGG + chr5_4:40785057-40785076 Msa0850940:intron 25.0%
! ACCAAGAAATTGAAATTAGA+AGG - chr5_4:40785061-40785080 None:intergenic 25.0%
! GCATTTGTAGTTTATACAAA+TGG + chr5_4:40785219-40785238 Msa0850940:intron 25.0%
! AAAGTCGTAACTACTAATAA+AGG - chr5_4:40785461-40785480 None:intergenic 25.0%
!! AATTTTGTAACTATGCTCTT+GGG + chr5_4:40785669-40785688 Msa0850940:CDS 25.0%
! TCCTTCTAATTTCAATTTCT+TGG + chr5_4:40785057-40785076 Msa0850940:intron 25.0%
! ACCAAGAAATTGAAATTAGA+AGG - chr5_4:40785061-40785080 None:intergenic 25.0%
! GCATTTGTAGTTTATACAAA+TGG + chr5_4:40785219-40785238 Msa0850940:intron 25.0%
! AAAGTCGTAACTACTAATAA+AGG - chr5_4:40785461-40785480 None:intergenic 25.0%
!! AATTTTGTAACTATGCTCTT+GGG + chr5_4:40785669-40785688 Msa0850940:CDS 25.0%
ACCTACTAGAAAAACTGAAA+AGG + chr5_4:40784899-40784918 Msa0850940:intron 30.0%
! TTATGGATTAACATACAGAC+TGG - chr5_4:40784964-40784983 None:intergenic 30.0%
TATCCAAAATGAACCCTAAT+GGG - chr5_4:40785004-40785023 None:intergenic 30.0%
TTATCCAAAATGAACCCTAA+TGG - chr5_4:40785005-40785024 None:intergenic 30.0%
TCAATTTCTTGGTATGCAAA+TGG + chr5_4:40785068-40785087 Msa0850940:intron 30.0%
CAATTTCTTGGTATGCAAAT+GGG + chr5_4:40785069-40785088 Msa0850940:intron 30.0%
AATTTCTTGGTATGCAAATG+GGG + chr5_4:40785070-40785089 Msa0850940:intron 30.0%
CAACATTCATTGTATCCAAT+TGG + chr5_4:40785320-40785339 Msa0850940:intron 30.0%
GAATCAGAGAAAATTTGGAA+CGG - chr5_4:40785362-40785381 None:intergenic 30.0%
TCTTGTTCATTGGAAATTGA+GGG - chr5_4:40785517-40785536 None:intergenic 30.0%
TCAATTTCCAATGAACAAGA+GGG + chr5_4:40785517-40785536 Msa0850940:CDS 30.0%
! TGCATTGGAATGATTGTTTT+CGG - chr5_4:40785552-40785571 None:intergenic 30.0%
! TTTCTTTGTTTGATGGAGAA+GGG - chr5_4:40785583-40785602 None:intergenic 30.0%
! ATTTCTTTGTTTGATGGAGA+AGG - chr5_4:40785584-40785603 None:intergenic 30.0%
TCTCCATCAAACAAAGAAAT+AGG + chr5_4:40785584-40785603 Msa0850940:CDS 30.0%
! ATGCCTATTTCTTTGTTTGA+TGG - chr5_4:40785590-40785609 None:intergenic 30.0%
! AGATTTGGTAATTGTTCGAA+AGG + chr5_4:40785644-40785663 Msa0850940:CDS 30.0%
! CAATTTTGTAACTATGCTCT+TGG + chr5_4:40785668-40785687 Msa0850940:CDS 30.0%
! ATTTTGTAACTATGCTCTTG+GGG + chr5_4:40785670-40785689 Msa0850940:CDS 30.0%
! ACAAGTGTAGTTTTCTTCAT+AGG + chr5_4:40785851-40785870 Msa0850940:CDS 30.0%
! CAAGTGTAGTTTTCTTCATA+GGG + chr5_4:40785852-40785871 Msa0850940:CDS 30.0%
TATGATCAACTACATTAGGA+GGG - chr5_4:40785935-40785954 None:intergenic 30.0%
ATATGATCAACTACATTAGG+AGG - chr5_4:40785936-40785955 None:intergenic 30.0%
ACCTACTAGAAAAACTGAAA+AGG + chr5_4:40784899-40784918 Msa0850940:intron 30.0%
! TTATGGATTAACATACAGAC+TGG - chr5_4:40784964-40784983 None:intergenic 30.0%
TATCCAAAATGAACCCTAAT+GGG - chr5_4:40785004-40785023 None:intergenic 30.0%
TTATCCAAAATGAACCCTAA+TGG - chr5_4:40785005-40785024 None:intergenic 30.0%
TCAATTTCTTGGTATGCAAA+TGG + chr5_4:40785068-40785087 Msa0850940:intron 30.0%
CAATTTCTTGGTATGCAAAT+GGG + chr5_4:40785069-40785088 Msa0850940:intron 30.0%
AATTTCTTGGTATGCAAATG+GGG + chr5_4:40785070-40785089 Msa0850940:intron 30.0%
CAACATTCATTGTATCCAAT+TGG + chr5_4:40785320-40785339 Msa0850940:intron 30.0%
GAATCAGAGAAAATTTGGAA+CGG - chr5_4:40785362-40785381 None:intergenic 30.0%
TCTTGTTCATTGGAAATTGA+GGG - chr5_4:40785517-40785536 None:intergenic 30.0%
TCAATTTCCAATGAACAAGA+GGG + chr5_4:40785517-40785536 Msa0850940:CDS 30.0%
! TGCATTGGAATGATTGTTTT+CGG - chr5_4:40785552-40785571 None:intergenic 30.0%
! TTTCTTTGTTTGATGGAGAA+GGG - chr5_4:40785583-40785602 None:intergenic 30.0%
! ATTTCTTTGTTTGATGGAGA+AGG - chr5_4:40785584-40785603 None:intergenic 30.0%
TCTCCATCAAACAAAGAAAT+AGG + chr5_4:40785584-40785603 Msa0850940:CDS 30.0%
! ATGCCTATTTCTTTGTTTGA+TGG - chr5_4:40785590-40785609 None:intergenic 30.0%
! AGATTTGGTAATTGTTCGAA+AGG + chr5_4:40785644-40785663 Msa0850940:CDS 30.0%
! CAATTTTGTAACTATGCTCT+TGG + chr5_4:40785668-40785687 Msa0850940:CDS 30.0%
! ATTTTGTAACTATGCTCTTG+GGG + chr5_4:40785670-40785689 Msa0850940:CDS 30.0%
! ACAAGTGTAGTTTTCTTCAT+AGG + chr5_4:40785851-40785870 Msa0850940:CDS 30.0%
! CAAGTGTAGTTTTCTTCATA+GGG + chr5_4:40785852-40785871 Msa0850940:CDS 30.0%
TATGATCAACTACATTAGGA+GGG - chr5_4:40785935-40785954 None:intergenic 30.0%
ATATGATCAACTACATTAGG+AGG - chr5_4:40785936-40785955 None:intergenic 30.0%
CTTGTGAAATCTTGGTTTCA+TGG - chr5_4:40784669-40784688 None:intergenic 35.0%
CAAAAGGAGTTTGAGAAGTT+TGG - chr5_4:40784699-40784718 None:intergenic 35.0%
TAACAGATCTTGTTCCCATT+AGG + chr5_4:40784767-40784786 Msa0850940:CDS 35.0%
AACAGATCTTGTTCCCATTA+GGG + chr5_4:40784768-40784787 Msa0850940:CDS 35.0%
CAAGAAAAGGACCAATACAA+CGG + chr5_4:40784813-40784832 Msa0850940:CDS 35.0%
AGAGAGTTCATTACATGAGA+AGG - chr5_4:40784856-40784875 None:intergenic 35.0%
!! GCCTTTTCAGTTTTTCTAGT+AGG - chr5_4:40784903-40784922 None:intergenic 35.0%
TGAGGTTTCTTGACAATAAC+AGG - chr5_4:40784933-40784952 None:intergenic 35.0%
! TACAGACTGGTCATAAAATG+AGG - chr5_4:40784951-40784970 None:intergenic 35.0%
TGTTAATCCATAAGTCTGCA+AGG + chr5_4:40784971-40784990 Msa0850940:intron 35.0%
TATCCAATTGGATGTCACTA+AGG + chr5_4:40785332-40785351 Msa0850940:intron 35.0%
ATCCAATTGGATGTCACTAA+GGG + chr5_4:40785333-40785352 Msa0850940:intron 35.0%
GTCGTAACTACTAATAAAGG+AGG - chr5_4:40785458-40785477 None:intergenic 35.0%
TCACTTCAATGTTATCGTTG+CGG - chr5_4:40785493-40785512 None:intergenic 35.0%
CTCTTGTTCATTGGAAATTG+AGG - chr5_4:40785518-40785537 None:intergenic 35.0%
CTCAATTTCCAATGAACAAG+AGG + chr5_4:40785516-40785535 Msa0850940:CDS 35.0%
ATTCTTACCCTCTTGTTCAT+TGG - chr5_4:40785527-40785546 None:intergenic 35.0%
TCAGAGAATCATTCACAAGA+TGG + chr5_4:40785783-40785802 Msa0850940:CDS 35.0%
CTCACCATTGTAATACTTCT+CGG - chr5_4:40785815-40785834 None:intergenic 35.0%
AAACTACACTTGTCACCATA+AGG - chr5_4:40785844-40785863 None:intergenic 35.0%
ATGATCAACTACATTAGGAG+GGG - chr5_4:40785934-40785953 None:intergenic 35.0%
! TTTTCAAATTGCTGCCATAG+CGG + chr5_4:40786095-40786114 Msa0850940:intron 35.0%
ATAAAAGCCATTGTAGCCTA+TGG - chr5_4:40786152-40786171 None:intergenic 35.0%
CTTGTGAAATCTTGGTTTCA+TGG - chr5_4:40784669-40784688 None:intergenic 35.0%
CAAAAGGAGTTTGAGAAGTT+TGG - chr5_4:40784699-40784718 None:intergenic 35.0%
TAACAGATCTTGTTCCCATT+AGG + chr5_4:40784767-40784786 Msa0850940:CDS 35.0%
AACAGATCTTGTTCCCATTA+GGG + chr5_4:40784768-40784787 Msa0850940:CDS 35.0%
CAAGAAAAGGACCAATACAA+CGG + chr5_4:40784813-40784832 Msa0850940:CDS 35.0%
AGAGAGTTCATTACATGAGA+AGG - chr5_4:40784856-40784875 None:intergenic 35.0%
!! GCCTTTTCAGTTTTTCTAGT+AGG - chr5_4:40784903-40784922 None:intergenic 35.0%
TGAGGTTTCTTGACAATAAC+AGG - chr5_4:40784933-40784952 None:intergenic 35.0%
! TACAGACTGGTCATAAAATG+AGG - chr5_4:40784951-40784970 None:intergenic 35.0%
TGTTAATCCATAAGTCTGCA+AGG + chr5_4:40784971-40784990 Msa0850940:intron 35.0%
TATCCAATTGGATGTCACTA+AGG + chr5_4:40785332-40785351 Msa0850940:intron 35.0%
ATCCAATTGGATGTCACTAA+GGG + chr5_4:40785333-40785352 Msa0850940:intron 35.0%
GTCGTAACTACTAATAAAGG+AGG - chr5_4:40785458-40785477 None:intergenic 35.0%
TCACTTCAATGTTATCGTTG+CGG - chr5_4:40785493-40785512 None:intergenic 35.0%
CTCTTGTTCATTGGAAATTG+AGG - chr5_4:40785518-40785537 None:intergenic 35.0%
CTCAATTTCCAATGAACAAG+AGG + chr5_4:40785516-40785535 Msa0850940:CDS 35.0%
ATTCTTACCCTCTTGTTCAT+TGG - chr5_4:40785527-40785546 None:intergenic 35.0%
TCAGAGAATCATTCACAAGA+TGG + chr5_4:40785783-40785802 Msa0850940:CDS 35.0%
CTCACCATTGTAATACTTCT+CGG - chr5_4:40785815-40785834 None:intergenic 35.0%
AAACTACACTTGTCACCATA+AGG - chr5_4:40785844-40785863 None:intergenic 35.0%
ATGATCAACTACATTAGGAG+GGG - chr5_4:40785934-40785953 None:intergenic 35.0%
! TTTTCAAATTGCTGCCATAG+CGG + chr5_4:40786095-40786114 Msa0850940:intron 35.0%
ATAAAAGCCATTGTAGCCTA+TGG - chr5_4:40786152-40786171 None:intergenic 35.0%
GTCAGATGCTTGTGAAATCT+TGG - chr5_4:40784677-40784696 None:intergenic 40.0%
!! TCTTTTGCTTTGGATGGTGT+AGG - chr5_4:40784730-40784749 None:intergenic 40.0%
ACACCATCCAAAGCAAAAGA+CGG + chr5_4:40784730-40784749 Msa0850940:CDS 40.0%
! TGATGATCCGTCTTTTGCTT+TGG - chr5_4:40784740-40784759 None:intergenic 40.0%
TGGCTTGAAACAACCCTAAT+GGG - chr5_4:40784784-40784803 None:intergenic 40.0%
ATGGCTTGAAACAACCCTAA+TGG - chr5_4:40784785-40784804 None:intergenic 40.0%
!! GTATTGGTCCTTTTCTTGGT+GGG - chr5_4:40784811-40784830 None:intergenic 40.0%
!! TGTATTGGTCCTTTTCTTGG+TGG - chr5_4:40784812-40784831 None:intergenic 40.0%
!! CGTTGTATTGGTCCTTTTCT+TGG - chr5_4:40784815-40784834 None:intergenic 40.0%
! CATCCCATTAGGGTTCATTT+TGG + chr5_4:40784998-40785017 Msa0850940:intron 40.0%
! TGAAGTAAGGGTGTGCAAAT+GGG - chr5_4:40785028-40785047 None:intergenic 40.0%
! TTGAAGTAAGGGTGTGCAAA+TGG - chr5_4:40785029-40785048 None:intergenic 40.0%
ATTTGCACACCCTTACTTCA+AGG + chr5_4:40785028-40785047 Msa0850940:intron 40.0%
! TCTTCCTCTTTTATGATGCC+AGG + chr5_4:40785094-40785113 Msa0850940:intron 40.0%
! CTTCCTCTTTTATGATGCCA+GGG + chr5_4:40785095-40785114 Msa0850940:intron 40.0%
!! TGAGTTGCTGTTTACAACCT+TGG + chr5_4:40785249-40785268 Msa0850940:intron 40.0%
ATCCCTTAGTGACATCCAAT+TGG - chr5_4:40785338-40785357 None:intergenic 40.0%
ATGTTATCGTTGCGGTTGTT+TGG - chr5_4:40785485-40785504 None:intergenic 40.0%
AACTAGCTCCTTCCAATTCA+CGG - chr5_4:40785716-40785735 None:intergenic 40.0%
!! CTCTCCGAGAAGTATTACAA+TGG + chr5_4:40785808-40785827 Msa0850940:CDS 40.0%
!! CGAGAAGTATTACAATGGTG+AGG + chr5_4:40785813-40785832 Msa0850940:CDS 40.0%
AATGGTGAGGAATGTCCTTA+TGG + chr5_4:40785826-40785845 Msa0850940:CDS 40.0%
! GTAGTTTTCTTCATAGGGTG+TGG + chr5_4:40785857-40785876 Msa0850940:intron 40.0%
ACAATTTCACCCCTGCTTAT+AGG + chr5_4:40785966-40785985 Msa0850940:intron 40.0%
AATAATCCGGCATACAAGCA+TGG - chr5_4:40786206-40786225 None:intergenic 40.0%
ATGCTTGTATGCCGGATTAT+TGG + chr5_4:40786205-40786224 Msa0850940:CDS 40.0%
GTCAGATGCTTGTGAAATCT+TGG - chr5_4:40784677-40784696 None:intergenic 40.0%
!! TCTTTTGCTTTGGATGGTGT+AGG - chr5_4:40784730-40784749 None:intergenic 40.0%
ACACCATCCAAAGCAAAAGA+CGG + chr5_4:40784730-40784749 Msa0850940:CDS 40.0%
! TGATGATCCGTCTTTTGCTT+TGG - chr5_4:40784740-40784759 None:intergenic 40.0%
TGGCTTGAAACAACCCTAAT+GGG - chr5_4:40784784-40784803 None:intergenic 40.0%
ATGGCTTGAAACAACCCTAA+TGG - chr5_4:40784785-40784804 None:intergenic 40.0%
!! GTATTGGTCCTTTTCTTGGT+GGG - chr5_4:40784811-40784830 None:intergenic 40.0%
!! TGTATTGGTCCTTTTCTTGG+TGG - chr5_4:40784812-40784831 None:intergenic 40.0%
!! CGTTGTATTGGTCCTTTTCT+TGG - chr5_4:40784815-40784834 None:intergenic 40.0%
! CATCCCATTAGGGTTCATTT+TGG + chr5_4:40784998-40785017 Msa0850940:intron 40.0%
! TGAAGTAAGGGTGTGCAAAT+GGG - chr5_4:40785028-40785047 None:intergenic 40.0%
! TTGAAGTAAGGGTGTGCAAA+TGG - chr5_4:40785029-40785048 None:intergenic 40.0%
ATTTGCACACCCTTACTTCA+AGG + chr5_4:40785028-40785047 Msa0850940:intron 40.0%
! TCTTCCTCTTTTATGATGCC+AGG + chr5_4:40785094-40785113 Msa0850940:intron 40.0%
! CTTCCTCTTTTATGATGCCA+GGG + chr5_4:40785095-40785114 Msa0850940:intron 40.0%
!! TGAGTTGCTGTTTACAACCT+TGG + chr5_4:40785249-40785268 Msa0850940:intron 40.0%
ATCCCTTAGTGACATCCAAT+TGG - chr5_4:40785338-40785357 None:intergenic 40.0%
ATGTTATCGTTGCGGTTGTT+TGG - chr5_4:40785485-40785504 None:intergenic 40.0%
AACTAGCTCCTTCCAATTCA+CGG - chr5_4:40785716-40785735 None:intergenic 40.0%
!! CTCTCCGAGAAGTATTACAA+TGG + chr5_4:40785808-40785827 Msa0850940:CDS 40.0%
!! CGAGAAGTATTACAATGGTG+AGG + chr5_4:40785813-40785832 Msa0850940:CDS 40.0%
AATGGTGAGGAATGTCCTTA+TGG + chr5_4:40785826-40785845 Msa0850940:CDS 40.0%
! GTAGTTTTCTTCATAGGGTG+TGG + chr5_4:40785857-40785876 Msa0850940:intron 40.0%
ACAATTTCACCCCTGCTTAT+AGG + chr5_4:40785966-40785985 Msa0850940:intron 40.0%
AATAATCCGGCATACAAGCA+TGG - chr5_4:40786206-40786225 None:intergenic 40.0%
ATGCTTGTATGCCGGATTAT+TGG + chr5_4:40786205-40786224 Msa0850940:CDS 40.0%
GGTGTAGGAAGTGACACAAA+AGG - chr5_4:40784715-40784734 None:intergenic 45.0%
!! GATCCGTCTTTTGCTTTGGA+TGG - chr5_4:40784736-40784755 None:intergenic 45.0%
AGCAAAAGACGGATCATCAG+AGG + chr5_4:40784741-40784760 Msa0850940:CDS 45.0%
! TCCTTTTCTTGGTGGGAACA+TGG - chr5_4:40784804-40784823 None:intergenic 45.0%
CAATACAACGGCTGCGAAAA+GGG + chr5_4:40784825-40784844 Msa0850940:CDS 45.0%
ATGCGTACCTTGCAGACTTA+TGG - chr5_4:40784981-40785000 None:intergenic 45.0%
GGATGCGTACCTTGAAGTAA+GGG - chr5_4:40785040-40785059 None:intergenic 45.0%
AGGATGCGTACCTTGAAGTA+AGG - chr5_4:40785041-40785060 None:intergenic 45.0%
AGACCCTGGCATCATAAAAG+AGG - chr5_4:40785101-40785120 None:intergenic 45.0%
! ATTTATGGTGACGAAGACCC+TGG - chr5_4:40785115-40785134 None:intergenic 45.0%
! AGAAGGGCGTATGAATGCAT+TGG - chr5_4:40785567-40785586 None:intergenic 45.0%
TTGTAACTATGCTCTTGGGG+TGG + chr5_4:40785673-40785692 Msa0850940:intron 45.0%
CCAACTTTGCCTATAAGCAG+GGG - chr5_4:40785978-40785997 None:intergenic 45.0%
GCCAACTTTGCCTATAAGCA+GGG - chr5_4:40785979-40785998 None:intergenic 45.0%
AGCCAACTTTGCCTATAAGC+AGG - chr5_4:40785980-40785999 None:intergenic 45.0%
!! GTTGGCTCTGAATGCTGATT+TGG + chr5_4:40785993-40786012 Msa0850940:intron 45.0%
! ATCCAGTGTGTTTCTGCCAT+AGG + chr5_4:40786172-40786191 Msa0850940:CDS 45.0%
ACAACTCCATGCTTGTATGC+CGG + chr5_4:40786197-40786216 Msa0850940:CDS 45.0%
GGTGTAGGAAGTGACACAAA+AGG - chr5_4:40784715-40784734 None:intergenic 45.0%
!! GATCCGTCTTTTGCTTTGGA+TGG - chr5_4:40784736-40784755 None:intergenic 45.0%
AGCAAAAGACGGATCATCAG+AGG + chr5_4:40784741-40784760 Msa0850940:CDS 45.0%
! TCCTTTTCTTGGTGGGAACA+TGG - chr5_4:40784804-40784823 None:intergenic 45.0%
CAATACAACGGCTGCGAAAA+GGG + chr5_4:40784825-40784844 Msa0850940:CDS 45.0%
ATGCGTACCTTGCAGACTTA+TGG - chr5_4:40784981-40785000 None:intergenic 45.0%
GGATGCGTACCTTGAAGTAA+GGG - chr5_4:40785040-40785059 None:intergenic 45.0%
AGGATGCGTACCTTGAAGTA+AGG - chr5_4:40785041-40785060 None:intergenic 45.0%
AGACCCTGGCATCATAAAAG+AGG - chr5_4:40785101-40785120 None:intergenic 45.0%
! ATTTATGGTGACGAAGACCC+TGG - chr5_4:40785115-40785134 None:intergenic 45.0%
! AGAAGGGCGTATGAATGCAT+TGG - chr5_4:40785567-40785586 None:intergenic 45.0%
TTGTAACTATGCTCTTGGGG+TGG + chr5_4:40785673-40785692 Msa0850940:intron 45.0%
CCAACTTTGCCTATAAGCAG+GGG - chr5_4:40785978-40785997 None:intergenic 45.0%
GCCAACTTTGCCTATAAGCA+GGG - chr5_4:40785979-40785998 None:intergenic 45.0%
AGCCAACTTTGCCTATAAGC+AGG - chr5_4:40785980-40785999 None:intergenic 45.0%
!! GTTGGCTCTGAATGCTGATT+TGG + chr5_4:40785993-40786012 Msa0850940:intron 45.0%
! ATCCAGTGTGTTTCTGCCAT+AGG + chr5_4:40786172-40786191 Msa0850940:CDS 45.0%
ACAACTCCATGCTTGTATGC+CGG + chr5_4:40786197-40786216 Msa0850940:CDS 45.0%
GCCATGTTCCCACCAAGAAA+AGG + chr5_4:40784800-40784819 Msa0850940:CDS 50.0%
! CCTTTTCGCAGCCGTTGTAT+TGG - chr5_4:40784827-40784846 None:intergenic 50.0%
CCAATACAACGGCTGCGAAA+AGG + chr5_4:40784824-40784843 Msa0850940:CDS 50.0%
TGCAAGGTACGCATCCCATT+AGG + chr5_4:40784987-40785006 Msa0850940:intron 50.0%
GCAAGGTACGCATCCCATTA+GGG + chr5_4:40784988-40785007 Msa0850940:intron 50.0%
CTCTTGGGGTGGATGAGATA+AGG + chr5_4:40785684-40785703 Msa0850940:intron 50.0%
ATAAGGCAGCCACCGTGAAT+TGG + chr5_4:40785701-40785720 Msa0850940:intron 50.0%
TAGCTCCTTCCAATTCACGG+TGG - chr5_4:40785713-40785732 None:intergenic 50.0%
CCCCTGCTTATAGGCAAAGT+TGG + chr5_4:40785975-40785994 Msa0850940:intron 50.0%
! GATTTTGTGCCAGCAGCCAT+AGG + chr5_4:40786133-40786152 Msa0850940:CDS 50.0%
AAGCATGGAGTTGTGGCCTA+TGG - chr5_4:40786191-40786210 None:intergenic 50.0%
GGCATACAAGCATGGAGTTG+TGG - chr5_4:40786198-40786217 None:intergenic 50.0%
ACGGAGGGTAGCCAATAATC+CGG - chr5_4:40786219-40786238 None:intergenic 50.0%
GCCATGTTCCCACCAAGAAA+AGG + chr5_4:40784800-40784819 Msa0850940:CDS 50.0%
! CCTTTTCGCAGCCGTTGTAT+TGG - chr5_4:40784827-40784846 None:intergenic 50.0%
CCAATACAACGGCTGCGAAA+AGG + chr5_4:40784824-40784843 Msa0850940:CDS 50.0%
TGCAAGGTACGCATCCCATT+AGG + chr5_4:40784987-40785006 Msa0850940:intron 50.0%
GCAAGGTACGCATCCCATTA+GGG + chr5_4:40784988-40785007 Msa0850940:intron 50.0%
CTCTTGGGGTGGATGAGATA+AGG + chr5_4:40785684-40785703 Msa0850940:intron 50.0%
ATAAGGCAGCCACCGTGAAT+TGG + chr5_4:40785701-40785720 Msa0850940:intron 50.0%
TAGCTCCTTCCAATTCACGG+TGG - chr5_4:40785713-40785732 None:intergenic 50.0%
CCCCTGCTTATAGGCAAAGT+TGG + chr5_4:40785975-40785994 Msa0850940:intron 50.0%
! GATTTTGTGCCAGCAGCCAT+AGG + chr5_4:40786133-40786152 Msa0850940:CDS 50.0%
AAGCATGGAGTTGTGGCCTA+TGG - chr5_4:40786191-40786210 None:intergenic 50.0%
GGCATACAAGCATGGAGTTG+TGG - chr5_4:40786198-40786217 None:intergenic 50.0%
ACGGAGGGTAGCCAATAATC+CGG - chr5_4:40786219-40786238 None:intergenic 50.0%
GCTAGTTAGTCCTCGCAACG+AGG + chr5_4:40785729-40785748 Msa0850940:CDS 55.0%
TGTAGTCGTTCCTCGTTGCG+AGG - chr5_4:40785742-40785761 None:intergenic 55.0%
CAACGAGGAACGACTACAGC+TGG + chr5_4:40785744-40785763 Msa0850940:CDS 55.0%
GCACAAAATCCTCCACGCCT+TGG - chr5_4:40786123-40786142 None:intergenic 55.0%
CCATTGTAGCCTATGGCTGC+TGG - chr5_4:40786145-40786164 None:intergenic 55.0%
CCAGCAGCCATAGGCTACAA+TGG + chr5_4:40786142-40786161 Msa0850940:CDS 55.0%
GGCCTATGGCAGAAACACAC+TGG - chr5_4:40786177-40786196 None:intergenic 55.0%
GCTAGTTAGTCCTCGCAACG+AGG + chr5_4:40785729-40785748 Msa0850940:CDS 55.0%
TGTAGTCGTTCCTCGTTGCG+AGG - chr5_4:40785742-40785761 None:intergenic 55.0%
CAACGAGGAACGACTACAGC+TGG + chr5_4:40785744-40785763 Msa0850940:CDS 55.0%
GCACAAAATCCTCCACGCCT+TGG - chr5_4:40786123-40786142 None:intergenic 55.0%
CCATTGTAGCCTATGGCTGC+TGG - chr5_4:40786145-40786164 None:intergenic 55.0%
CCAGCAGCCATAGGCTACAA+TGG + chr5_4:40786142-40786161 Msa0850940:CDS 55.0%
GGCCTATGGCAGAAACACAC+TGG - chr5_4:40786177-40786196 None:intergenic 55.0%
GGCAGCCACCGTGAATTGGA+AGG + chr5_4:40785705-40785724 Msa0850940:intron 60.0%
TTGCTGCCATAGCGGCACCA+AGG + chr5_4:40786103-40786122 Msa0850940:intron 60.0%
GGCAGCCACCGTGAATTGGA+AGG + chr5_4:40785705-40785724 Msa0850940:intron 60.0%
TTGCTGCCATAGCGGCACCA+AGG + chr5_4:40786103-40786122 Msa0850940:intron 60.0%
!! TCCACGCCTTGGTGCCGCTA+TGG - chr5_4:40786112-40786131 None:intergenic 65.0%
ATAGCGGCACCAAGGCGTGG+AGG + chr5_4:40786111-40786130 Msa0850940:intron 65.0%
!! TCCACGCCTTGGTGCCGCTA+TGG - chr5_4:40786112-40786131 None:intergenic 65.0%
ATAGCGGCACCAAGGCGTGG+AGG + chr5_4:40786111-40786130 Msa0850940:intron 65.0%
GCCATAGCGGCACCAAGGCG+TGG + chr5_4:40786108-40786127 Msa0850940:intron 70.0%
GCCATAGCGGCACCAAGGCG+TGG + chr5_4:40786108-40786127 Msa0850940:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 40784649 40786240 40784649 ID=Msa0850940;Name=Msa0850940
chr5_4 mRNA 40784649 40786240 40784649 ID=Msa0850940-mRNA-1;Parent=Msa0850940;Name=Msa0850940-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.4|0.75|0.8|5|0|244
chr5_4 exon 40784649 40784861 40784649 ID=Msa0850940-mRNA-1:exon:12876;Parent=Msa0850940-mRNA-1
chr5_4 exon 40785296 40785302 40785296 ID=Msa0850940-mRNA-1:exon:12877;Parent=Msa0850940-mRNA-1
chr5_4 exon 40785471 40785691 40785471 ID=Msa0850940-mRNA-1:exon:12878;Parent=Msa0850940-mRNA-1
chr5_4 exon 40785706 40785873 40785706 ID=Msa0850940-mRNA-1:exon:12879;Parent=Msa0850940-mRNA-1
chr5_4 exon 40786115 40786240 40786115 ID=Msa0850940-mRNA-1:exon:12880;Parent=Msa0850940-mRNA-1
chr5_4 CDS 40784649 40784861 40784649 ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1
chr5_4 CDS 40785296 40785302 40785296 ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1
chr5_4 CDS 40785471 40785691 40785471 ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1
chr5_4 CDS 40785706 40785873 40785706 ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1
chr5_4 CDS 40786115 40786240 40786115 ID=Msa0850940-mRNA-1:cds;Parent=Msa0850940-mRNA-1
Gene Sequence

>Msa0850940

ATGATTTTTGTGAAGGACCATGAAACCAAGATTTCACAAGCATCTGACCAAACTTCTCAAACTCCTTTTGTGTCACTTCCTACACCATCCAAAGCAAAAGACGGATCATCAGAGGCTGTAACAGATCTTGTTCCCATTAGGGTTGTTTCAAGCCATGTTCCCACCAAGAAAAGGACCAATACAACGGCTGCGAAAAGGGCTAAGCCTTCTCATTTTTATATTACGACTTTTCCAAACAACCGCAACGATAACATTGAAGTGATCCCTCAATTTCCAATGAACAAGAGGGTAAGAATTTCCGAAAACAATCATTCCAATGCATTCATACGCCCTTCTCCATCAAACAAAGAAATAGGCATCTTTTTCTTCAAGACTCGTATTTGTCATAAGTTTAGATTTGGTAATTGTTCGAAAGGTCAATTTTGTAACTATGCTCTTGGGGCAGCCACCGTGAATTGGAAGGAGCTAGTTAGTCCTCGCAACGAGGAACGACTACAGCTGGTGAGTTCAAATGAAGATCAGAGAATCATTCACAAGATGGTGCTCTCCGAGAAGTATTACAATGGTGAGGAATGTCCTTATGGTGACAAGTGTAGTTTTCTTCATAGGCGGCACCAAGGCGTGGAGGATTTTGTGCCAGCAGCCATAGGCTACAATGGCTTTTATATCCAGTGTGTTTCTGCCATAGGCCACAACTCCATGCTTGTATGCCGGATTATTGGCTACCCTCCGTAA

Protein sequence

>Msa0850940

MIFVKDHETKISQASDQTSQTPFVSLPTPSKAKDGSSEAVTDLVPIRVVSSHVPTKKRTNTTAAKRAKPSHFYITTFPNNRNDNIEVIPQFPMNKRVRISENNHSNAFIRPSPSNKEIGIFFFKTRICHKFRFGNCSKGQFCNYALGAATVNWKELVSPRNEERLQLVSSNEDQRIIHKMVLSEKYYNGEECPYGDKCSFLHRRHQGVEDFVPAAIGYNGFYIQCVSAIGHNSMLVCRIIGYPP*