AlfalfaGEDB | Msa0851810

M. sativa cultivar zhongmu-4 / Msa0851810

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851810	RHN56313.1	93.672	806	43	1	22	827	23	820	0.0	1533

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851810	sp\|O81832\|Y4729_ARATH	47.037	827	382	12	9	827	5	783	0.0	739

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851810	A0A396HUX6	93.672	806	43	1	22	827	23	820	0.0	1533

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0851810	MtrunA17_Chr5g0428111	93.672	806	43	1	22	827	23	820	1533
Msa0851810	MtrunA17_Chr5g0428101	83.213	828	122	5	1	827	1	812	1392
Msa0851810	MtrunA17_Chr5g0422921	70.960	823	226	8	11	827	1	816	1173
Msa0851810	MtrunA17_Chr3g0093161	67.952	830	248	10	1	827	1	815	1153
Msa0851810	MtrunA17_Chr8g0361431	63.636	803	249	10	1	801	14	775	1002
Msa0851810	MtrunA17_Chr3g0078551	57.820	844	329	12	6	827	4	842	962
Msa0851810	MtrunA17_Chr3g0078521	57.464	844	329	11	4	827	1	834	956
Msa0851810	MtrunA17_Chr3g0078531	56.635	844	333	12	4	827	12	842	947
Msa0851810	MtrunA17_Chr3g0078541	57.927	820	315	11	28	827	36	845	934
Msa0851810	MtrunA17_Chr8g0361281	53.159	839	368	11	1	827	1	826	874

Showing 1 to 10 of 508 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0851810	AT4G27290.2	47.431	837	410	14	9	827	5	829	758
Msa0851810	AT4G27290.1	47.037	827	382	12	9	827	5	783	739
Msa0851810	AT4G21380.1	45.400	837	410	15	25	827	27	850	689
Msa0851810	AT1G11340.1	45.642	826	413	19	28	827	18	833	671
Msa0851810	AT1G65800.1	45.629	835	407	18	27	827	26	847	665
Msa0851810	AT4G27300.1	45.488	820	405	17	25	827	21	815	663
Msa0851810	AT1G65790.1	44.564	837	412	16	25	827	25	843	654
Msa0851810	AT1G11410.4	42.823	836	433	17	27	827	27	852	627
Msa0851810	AT1G11410.1	42.823	836	433	17	27	827	20	845	627
Msa0851810	AT1G11303.1	42.212	841	431	19	12	827	10	820	627

Showing 1 to 10 of 516 entries

Previous1 2 3 4 5…52Next

Find 157 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTTTCAGGAAATTC+TGG	0.278773	5_4:+42316450	Msa0851810:CDS
AAACTCGGTGAAGGTGGTTT+TGG	0.276636	5_4:+42316292	Msa0851810:CDS
AAAGACTTTCAGGAAATTCT+GGG	0.429362	5_4:+42316451	Msa0851810:CDS
AAATATCCCCGTTCGAAGAG+TGG	0.552556	5_4:+42312037	Msa0851810:CDS
AAATCAGATGTATTTAGCTT+TGG	0.407963	5_4:+42317096	Msa0851810:CDS
AAATCCATAGGACAGGACCA+TGG	0.677085	5_4:+42312459	Msa0851810:CDS
AAATGAAGCAGACTTGGTAA+TGG	0.567115	5_4:-42311916	None:intergenic
AACAATAAACTCGGTGAAGG+TGG	0.570106	5_4:+42316286	Msa0851810:CDS
AACAATGGAATTCAATGGAC+TGG	0.497504	5_4:+42312798	Msa0851810:CDS
AACCCAAACCACTCTTCGAA+CGG	0.550904	5_4:-42312045	None:intergenic

Showing 1 to 10 of 157 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTAAAACATCGAGCATAGT+TGG	-	chr5_4:42311840-42311859	None:intergenic	30.0%
ATGTTCCTGAATCAAAAACA+TGG	+	chr5_4:42312648-42312667	Msa0851810:CDS	30.0%
TAATAATCACAAGCATCCAA+TGG	-	chr5_4:42312692-42312711	None:intergenic	30.0%
TATACATACTTGGATGCAAA+TGG	+	chr5_4:42312992-42313011	Msa0851810:CDS	30.0%
GACTCATTTCTTGTAAATAC+AGG	+	chr5_4:42313307-42313326	Msa0851810:intron	30.0%
TCATTTCTTGTAAATACAGG+AGG	+	chr5_4:42313310-42313329	Msa0851810:intron	30.0%
AATAAAAGACTCCACGAATA+AGG	-	chr5_4:42313916-42313935	None:intergenic	30.0%
CTTCATGGAACCATTATTAT+AGG	+	chr5_4:42313997-42314016	Msa0851810:intron	30.0%
GATACTTAAAATGAAACGGA+GGG	+	chr5_4:42314272-42314291	Msa0851810:intron	30.0%
TCTAACACACAAGTCTTTAT+AGG	+	chr5_4:42314532-42314551	Msa0851810:intron	30.0%

Showing 1 to 10 of 346 entries

Previous1 2 3 4 5…35Next

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	42311825	42317574	42311825	ID=Msa0851810;Name=Msa0851810
chr5_4	mRNA	42311825	42317574	42311825	ID=Msa0851810-mRNA-1;Parent=Msa0851810;Name=Msa0851810-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|0\|0\|0.62\|1\|1\|8\|0\|827
chr5_4	exon	42311825	42313124	42311825	ID=Msa0851810-mRNA-1:exon:13434;Parent=Msa0851810-mRNA-1
chr5_4	exon	42313329	42313448	42313329	ID=Msa0851810-mRNA-1:exon:13435;Parent=Msa0851810-mRNA-1
chr5_4	exon	42313542	42313565	42313542	ID=Msa0851810-mRNA-1:exon:13436;Parent=Msa0851810-mRNA-1
chr5_4	exon	42316191	42316327	42316191	ID=Msa0851810-mRNA-1:exon:13437;Parent=Msa0851810-mRNA-1
chr5_4	exon	42316417	42316627	42316417	ID=Msa0851810-mRNA-1:exon:13438;Parent=Msa0851810-mRNA-1
chr5_4	exon	42316736	42316973	42316736	ID=Msa0851810-mRNA-1:exon:13439;Parent=Msa0851810-mRNA-1
chr5_4	exon	42317050	42317200	42317050	ID=Msa0851810-mRNA-1:exon:13440;Parent=Msa0851810-mRNA-1
chr5_4	exon	42317272	42317574	42317272	ID=Msa0851810-mRNA-1:exon:13441;Parent=Msa0851810-mRNA-1
chr5_4	CDS	42311825	42313124	42311825	ID=Msa0851810-mRNA-1:cds;Parent=Msa0851810-mRNA-1
chr5_4	CDS	42313329	42313448	42313329	ID=Msa0851810-mRNA-1:cds;Parent=Msa0851810-mRNA-1
chr5_4	CDS	42313542	42313565	42313542	ID=Msa0851810-mRNA-1:cds;Parent=Msa0851810-mRNA-1
chr5_4	CDS	42316191	42316327	42316191	ID=Msa0851810-mRNA-1:cds;Parent=Msa0851810-mRNA-1
chr5_4	CDS	42316417	42316627	42316417	ID=Msa0851810-mRNA-1:cds;Parent=Msa0851810-mRNA-1
chr5_4	CDS	42316736	42316973	42316736	ID=Msa0851810-mRNA-1:cds;Parent=Msa0851810-mRNA-1
chr5_4	CDS	42317050	42317200	42317050	ID=Msa0851810-mRNA-1:cds;Parent=Msa0851810-mRNA-1
chr5_4	CDS	42317272	42317574	42317272	ID=Msa0851810-mRNA-1:cds;Parent=Msa0851810-mRNA-1

Gene Sequence

>Msa0851810

ATGGCCATTCTTCCAACTATGCTCGATGTTTTAATTATTATTATTATTAATGTTCTTGTTGTATTGTCTCATATTTCCTATGCAACCGATACCATTACCAAGTCTGCTTCATTTCCTGATGGCAGCACTTTGGTCTCTAAGGATGGAACCTTTGAGATGGGTTTCTTCAAACCTGGTAAGTCCTCAAACCGCTATGTAGGAATATGGTACAAAAATATCCCCGTTCGAAGAGTGGTTTGGGTTGCAAATCGAAACAATCCAACAAAAGACGATTCGAGCAAGTTGATCATAAGTCAAGATGGAAACCTTGTGCTTCTCAACCACAATGACTCTCTTGTCTGGTCAACAAATGCATCAAGAAAAGCTTCAAGTCCTGTTGTGCAGCTCTTGAACAATGGAAATTTAGTACTTAAAGATGAGAAGGATAACAATGAAGAAAGTTTTTTGTGGCAAGGCTTTGACCATCCTTGTGATACACTATTAGCTGGAATGAAGTGTGGATGGAATCGAAAATTGGGTTTAGTCTGGAATATGACTTCTTGGAAAAATGAAGAGGATCCATCTTCAGGAGATGTAATTCTAGTTATGGTGCTTACAAGTAATCCAGAAAGCGTAATATTGAAGGGCTCGACTAAAATCCATAGGACAGGACCATGGAATGCTCTTTCAAGTGGAGTAGTCGGATTTAAACCTAATCCACTTTACGATTTTGTATTTGTTAACAATGAAGATGAAGTGTATTATAGATACACGCTGAAGAATAGTTCTGTGATCTCTATAGTTATTGTCAACCAAACCCTAGCAGTTCGACAACGTCTCCTTTATGTTCCTGAATCAAAAACATGGAGTGTTTACCAAACCACGCCATTGGATGCTTGTGATTATTACAATGTTTGTGGGGCAAATGGACAATGCATCATTGATGGATCGCCAATGTGTCAATGTTTACTTGGATTTAAGCCAAAATCACCACAACAATGGAATTCAATGGACTGGACACAAGGATGTGTGCGTAGTGGAAATTGGAGTTGTGGGATCAAAAACCAAGATGGATTTCAAAAATTTGTTGGGATGAAATTTCCAAATACTACAAATTCTTGGATTAATCGACACATGACACTTAACGATTGCAAGATCAAATGCTTACAAAATTGTTCTTGCACAGCTTATACATACTTGGATGCAAATGGAGCAGTTAGTGGTTGTTCCATCTGGTTTGGCGATCTTATTGATTTAAGAATTTCACAAAGTAGTGGTCAAGATCTCTATGTTCGAATGGACATTGATTCTTCAAATTTCGGAGGTCTTGCACATGGGCGTGGGAAGAAAGTTGTCATGACGGTTTCGATCACAGTTTCAATGTTGCTTGTGATGCTATTGGTATTCTCCTACGTTTATATATTCAAATCAAAGCTTAAAGGTTGTAAACTTGTGTACGTCTTAGGGAAAAAAGAAAAAGATGGAGTGGGACATGAAGATTTTGAGCTTCCTTTCTTTGATCTAGATACAATGATCAAGGTCACCGATAATTTCTCAATCAACAATAAACTCGGTGAAGGTGGTTTTGGACCGGTATACAAGGGTACATTATTAGATGGACAAGAAATTGCAGTCAAAAGACTTTCAGGAAATTCTGGGCAAGGATTGAAAGAATTTAAAAATGAAGTCATATTGTGTGCTAAATTGCAACATCGAAATCTTGTTAAGGTTATTGGTTGTTGCATTGAAGGAGAGGAAAGACTCTTACTCTACGAATACATGCCAAACAAAAGCCTTGACTCATTTCTTTTTGATCCAACTCAAAGTAAATTGTTAAGTTGGCCATTGCGTTTTAACATCTTGAATGCAATTGCTCGAGGAATTCAATATCTTCATCAAGATTCCAGATTAAGGATCATACACAGAGATCTAAAGGCAAGTAATATTTTATTAGACAATGAAATGGACCCGAAAATTTCAGATTTTGGCTTGGCTAGAATGTGTGGAGGTGATCAAATTGAAGGGAAGACAAGCAGAATTGTTGGTACATACGGCTATATGGCACCGGAATATGTGATTCATGGATTATTCTCTATAAAATCAGATGTATTTAGCTTTGGTGTATTACTGCTTGAAATAATAAGCGGAAAGAAAAATAGAGCCCTTACCTATCATGAACGTGATCACAATCTTATTTGGCATGCTTGGAGATTGTGGAATGAAGGAACTCCACATAATTTGATTGATGAATGCTTAAGAGAAACATGTCTTCTACACGAAGCTTTACGATGTATCCAAATTGGTCTATTATGTGTGCAACATGATGCTAATGATAGGCCAAACATGAAATATGTGGTTACGATGTTGGATAGTGAAAGTACTTTACCTGAACCAAAAGAACCTGGTTTCTTAATTCAAAGGGTATTGATTGAAGGACAATCTTCTTCTAAACGCCAAACATCTTCTGATAATGGAATAACTATCACACGATTAAGTGCTAGATAG

Protein sequence

>Msa0851810

MAILPTMLDVLIIIIINVLVVLSHISYATDTITKSASFPDGSTLVSKDGTFEMGFFKPGKSSNRYVGIWYKNIPVRRVVWVANRNNPTKDDSSKLIISQDGNLVLLNHNDSLVWSTNASRKASSPVVQLLNNGNLVLKDEKDNNEESFLWQGFDHPCDTLLAGMKCGWNRKLGLVWNMTSWKNEEDPSSGDVILVMVLTSNPESVILKGSTKIHRTGPWNALSSGVVGFKPNPLYDFVFVNNEDEVYYRYTLKNSSVISIVIVNQTLAVRQRLLYVPESKTWSVYQTTPLDACDYYNVCGANGQCIIDGSPMCQCLLGFKPKSPQQWNSMDWTQGCVRSGNWSCGIKNQDGFQKFVGMKFPNTTNSWINRHMTLNDCKIKCLQNCSCTAYTYLDANGAVSGCSIWFGDLIDLRISQSSGQDLYVRMDIDSSNFGGLAHGRGKKVVMTVSITVSMLLVMLLVFSYVYIFKSKLKGCKLVYVLGKKEKDGVGHEDFELPFFDLDTMIKVTDNFSINNKLGEGGFGPVYKGTLLDGQEIAVKRLSGNSGQGLKEFKNEVILCAKLQHRNLVKVIGCCIEGEERLLLYEYMPNKSLDSFLFDPTQSKLLSWPLRFNILNAIARGIQYLHQDSRLRIIHRDLKASNILLDNEMDPKISDFGLARMCGGDQIEGKTSRIVGTYGYMAPEYVIHGLFSIKSDVFSFGVLLLEIISGKKNRALTYHERDHNLIWHAWRLWNEGTPHNLIDECLRETCLLHEALRCIQIGLLCVQHDANDRPNMKYVVTMLDSESTLPEPKEPGFLIQRVLIEGQSSSKRQTSSDNGITITRLSAR*