Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0852200 | XP_004490516.1 | 77.236 | 123 | 27 | 1 | 1 | 122 | 479 | 601 | 4.92e-57 | 197 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0852200 | sp|Q9LVM0|Y5830_ARATH | 63.158 | 114 | 40 | 2 | 3 | 116 | 518 | 629 | 1.20e-39 | 143 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0852200 | A0A1S2XK00 | 77.236 | 123 | 27 | 1 | 1 | 122 | 479 | 601 | 2.35e-57 | 197 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0852200 | MtrunA17_Chr5g0428541 | 76.230 | 122 | 28 | 1 | 1 | 121 | 471 | 592 | 1.75e-59 | 192 |
Msa0852200 | MtrunA17_Chr3g0128551 | 67.480 | 123 | 36 | 4 | 1 | 122 | 501 | 620 | 1.60e-48 | 164 |
Msa0852200 | MtrunA17_Chr5g0432851 | 64.957 | 117 | 39 | 2 | 2 | 118 | 515 | 629 | 3.41e-42 | 147 |
Msa0852200 | MtrunA17_Chr3g0108301 | 63.248 | 117 | 41 | 2 | 2 | 118 | 514 | 628 | 5.23e-42 | 146 |
Msa0852200 | MtrunA17_Chr7g0245171 | 62.162 | 111 | 38 | 4 | 7 | 116 | 499 | 606 | 1.51e-39 | 139 |
Msa0852200 | MtrunA17_Chr8g0393211 | 52.459 | 122 | 56 | 2 | 2 | 123 | 533 | 652 | 3.83e-38 | 135 |
Msa0852200 | MtrunA17_Chr4g0062911 | 56.410 | 117 | 49 | 2 | 2 | 118 | 505 | 619 | 3.08e-37 | 133 |
Msa0852200 | MtrunA17_Chr5g0396941 | 54.237 | 118 | 52 | 2 | 1 | 118 | 459 | 574 | 7.29e-37 | 132 |
Msa0852200 | MtrunA17_Chr5g0434551 | 48.780 | 123 | 61 | 2 | 2 | 124 | 498 | 618 | 3.32e-36 | 130 |
Msa0852200 | MtrunA17_Chr3g0126281 | 57.273 | 110 | 45 | 2 | 2 | 111 | 215 | 322 | 2.27e-35 | 124 |
Msa0852200 | MtrunA17_Chr3g0126271 | 55.462 | 119 | 50 | 3 | 2 | 120 | 481 | 596 | 2.74e-35 | 127 |
Msa0852200 | MtrunA17_Chr6g0478621 | 50.000 | 122 | 59 | 2 | 2 | 123 | 536 | 655 | 2.83e-35 | 127 |
Msa0852200 | MtrunA17_Chr1g0209521 | 54.167 | 120 | 48 | 3 | 2 | 116 | 520 | 637 | 9.24e-35 | 126 |
Msa0852200 | MtrunA17_Chr8g0387791 | 54.237 | 118 | 52 | 2 | 1 | 118 | 482 | 597 | 9.90e-35 | 126 |
Msa0852200 | MtrunA17_Chr1g0159161 | 56.034 | 116 | 47 | 3 | 3 | 118 | 447 | 558 | 1.01e-32 | 120 |
Msa0852200 | MtrunA17_Chr5g0423121 | 50.435 | 115 | 56 | 1 | 2 | 116 | 494 | 607 | 2.12e-31 | 117 |
Msa0852200 | MtrunA17_Chr7g0265601 | 42.754 | 138 | 64 | 5 | 1 | 125 | 535 | 670 | 1.05e-29 | 112 |
Msa0852200 | MtrunA17_Chr4g0037561 | 46.729 | 107 | 55 | 1 | 7 | 113 | 533 | 637 | 8.63e-24 | 95.5 |
Msa0852200 | MtrunA17_Chr5g0445251 | 41.441 | 111 | 57 | 2 | 3 | 113 | 82 | 184 | 5.36e-23 | 89.7 |
Msa0852200 | MtrunA17_Chr7g0237801 | 38.017 | 121 | 72 | 3 | 1 | 120 | 544 | 662 | 2.68e-22 | 91.3 |
Msa0852200 | MtrunA17_Chr5g0437741 | 39.130 | 115 | 65 | 3 | 7 | 121 | 661 | 770 | 1.18e-20 | 86.3 |
Msa0852200 | MtrunA17_Chr1g0179521 | 41.270 | 126 | 63 | 5 | 2 | 125 | 523 | 639 | 5.15e-20 | 84.7 |
Msa0852200 | MtrunA17_Chr4g0005201 | 40.000 | 115 | 64 | 3 | 7 | 121 | 669 | 778 | 1.12e-18 | 80.9 |
Msa0852200 | MtrunA17_Chr2g0288391 | 46.067 | 89 | 42 | 2 | 22 | 110 | 517 | 599 | 5.06e-18 | 79.0 |
Msa0852200 | MtrunA17_Chr2g0279071 | 36.975 | 119 | 72 | 3 | 7 | 124 | 297 | 413 | 8.23e-18 | 78.2 |
Msa0852200 | MtrunA17_Chr3g0117921 | 42.857 | 91 | 46 | 2 | 19 | 109 | 540 | 624 | 9.64e-18 | 78.2 |
Msa0852200 | MtrunA17_Chr8g0376301 | 44.944 | 89 | 45 | 2 | 22 | 110 | 289 | 373 | 2.12e-17 | 76.6 |
Msa0852200 | MtrunA17_Chr6g0478181 | 34.906 | 106 | 65 | 2 | 16 | 118 | 443 | 547 | 2.72e-16 | 73.9 |
Msa0852200 | MtrunA17_Chr8g0388991 | 38.596 | 114 | 66 | 3 | 7 | 118 | 507 | 618 | 1.60e-15 | 71.6 |
Msa0852200 | MtrunA17_Chr6g0488771 | 37.391 | 115 | 67 | 3 | 7 | 118 | 297 | 409 | 1.02e-14 | 69.3 |
Msa0852200 | MtrunA17_Chr1g0147701 | 35.965 | 114 | 69 | 3 | 7 | 118 | 505 | 616 | 1.41e-14 | 68.9 |
Msa0852200 | MtrunA17_Chr7g0237821 | 35.833 | 120 | 72 | 3 | 1 | 120 | 963 | 1077 | 1.44e-14 | 68.9 |
Msa0852200 | MtrunA17_Chr2g0312651 | 36.364 | 110 | 66 | 3 | 7 | 115 | 978 | 1084 | 2.27e-14 | 68.6 |
Msa0852200 | MtrunA17_Chr5g0419721 | 36.290 | 124 | 71 | 4 | 7 | 130 | 817 | 932 | 2.89e-14 | 68.2 |
Msa0852200 | MtrunA17_Chr2g0334251 | 34.783 | 115 | 69 | 4 | 7 | 118 | 542 | 653 | 1.99e-13 | 65.9 |
Msa0852200 | MtrunA17_Chr1g0190411 | 31.667 | 120 | 78 | 4 | 7 | 126 | 879 | 994 | 2.47e-13 | 65.5 |
Msa0852200 | MtrunA17_Chr1g0209211 | 34.234 | 111 | 71 | 2 | 7 | 117 | 597 | 705 | 2.53e-13 | 65.5 |
Msa0852200 | MtrunA17_Chr4g0017251 | 32.540 | 126 | 76 | 4 | 7 | 129 | 844 | 963 | 2.81e-13 | 65.5 |
Msa0852200 | MtrunA17_Chr7g0262141 | 34.483 | 116 | 73 | 3 | 7 | 122 | 882 | 994 | 3.14e-13 | 65.1 |
Msa0852200 | MtrunA17_Chr7g0221191 | 35.514 | 107 | 66 | 2 | 7 | 111 | 561 | 666 | 4.29e-13 | 64.7 |
Msa0852200 | MtrunA17_Chr1g0183231 | 32.576 | 132 | 75 | 5 | 1 | 122 | 857 | 984 | 5.89e-13 | 64.3 |
Msa0852200 | MtrunA17_Chr4g0058761 | 36.937 | 111 | 67 | 3 | 7 | 116 | 942 | 1050 | 6.47e-13 | 64.3 |
Msa0852200 | MtrunA17_Chr7g0244931 | 39.286 | 112 | 64 | 4 | 7 | 118 | 836 | 943 | 8.98e-13 | 63.9 |
Msa0852200 | MtrunA17_Chr4g0070291 | 29.752 | 121 | 76 | 2 | 5 | 116 | 505 | 625 | 1.17e-12 | 63.5 |
Msa0852200 | MtrunA17_Chr3g0140861 | 35.772 | 123 | 69 | 6 | 7 | 126 | 830 | 945 | 1.43e-12 | 63.2 |
Msa0852200 | MtrunA17_Chr7g0231541 | 33.645 | 107 | 64 | 2 | 7 | 113 | 614 | 713 | 1.93e-12 | 62.8 |
Msa0852200 | MtrunA17_Chr4g0053221 | 37.838 | 111 | 52 | 3 | 4 | 113 | 522 | 616 | 1.98e-12 | 62.8 |
Msa0852200 | MtrunA17_Chr7g0232131 | 33.645 | 107 | 64 | 2 | 7 | 113 | 1081 | 1180 | 2.02e-12 | 62.8 |
Msa0852200 | MtrunA17_Chr3g0129391 | 35.455 | 110 | 68 | 3 | 7 | 116 | 1044 | 1150 | 3.71e-12 | 62.0 |
Msa0852200 | MtrunA17_Chr8g0365701 | 34.862 | 109 | 68 | 2 | 7 | 113 | 20 | 127 | 3.72e-12 | 60.8 |
Msa0852200 | MtrunA17_Chr2g0324931 | 34.021 | 97 | 59 | 2 | 21 | 117 | 876 | 967 | 3.81e-12 | 62.0 |
Msa0852200 | MtrunA17_Chr4g0012841 | 37.374 | 99 | 58 | 4 | 20 | 118 | 761 | 855 | 4.27e-12 | 62.0 |
Msa0852200 | MtrunA17_Chr5g0398441 | 31.818 | 110 | 71 | 2 | 7 | 116 | 780 | 885 | 4.28e-12 | 62.0 |
Msa0852200 | MtrunA17_Chr2g0301061 | 30.000 | 110 | 75 | 2 | 7 | 115 | 86 | 194 | 6.14e-12 | 60.1 |
Msa0852200 | MtrunA17_Chr5g0442151 | 33.071 | 127 | 71 | 7 | 7 | 130 | 852 | 967 | 6.17e-12 | 61.6 |
Msa0852200 | MtrunA17_Chr0c01g0489481 | 36.449 | 107 | 64 | 3 | 7 | 111 | 497 | 601 | 6.66e-12 | 61.2 |
Msa0852200 | MtrunA17_Chr7g0270121 | 35.870 | 92 | 58 | 1 | 22 | 113 | 565 | 655 | 6.94e-12 | 61.2 |
Msa0852200 | MtrunA17_Chr7g0243401 | 31.624 | 117 | 77 | 1 | 3 | 116 | 605 | 721 | 7.21e-12 | 61.2 |
Msa0852200 | MtrunA17_Chr8g0345561 | 33.981 | 103 | 66 | 2 | 18 | 120 | 987 | 1087 | 3.07e-11 | 59.7 |
Msa0852200 | MtrunA17_Chr2g0313911 | 36.607 | 112 | 67 | 3 | 7 | 118 | 240 | 347 | 3.50e-11 | 58.9 |
Msa0852200 | MtrunA17_Chr1g0194541 | 35.870 | 92 | 58 | 1 | 22 | 113 | 476 | 566 | 3.82e-11 | 59.3 |
Msa0852200 | MtrunA17_Chr3g0102901 | 30.769 | 117 | 78 | 3 | 1 | 116 | 940 | 1054 | 3.92e-11 | 59.3 |
Msa0852200 | MtrunA17_Chr3g0112391 | 35.789 | 95 | 60 | 1 | 20 | 113 | 525 | 619 | 5.11e-11 | 58.9 |
Msa0852200 | MtrunA17_Chr5g0409041 | 33.333 | 105 | 66 | 3 | 7 | 111 | 471 | 571 | 9.13e-11 | 58.2 |
Msa0852200 | MtrunA17_Chr1g0169841 | 31.624 | 117 | 70 | 4 | 7 | 118 | 980 | 1091 | 9.54e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0852200 | AT5G58300.3 | 63.158 | 114 | 40 | 2 | 3 | 116 | 518 | 629 | 1.22e-40 | 143 |
Msa0852200 | AT5G58300.1 | 63.158 | 114 | 40 | 2 | 3 | 116 | 518 | 629 | 1.22e-40 | 143 |
Msa0852200 | AT5G58300.2 | 63.158 | 114 | 40 | 2 | 3 | 116 | 518 | 629 | 1.22e-40 | 143 |
Msa0852200 | AT2G26730.1 | 58.929 | 112 | 44 | 2 | 7 | 118 | 512 | 621 | 1.24e-37 | 134 |
Msa0852200 | AT3G08680.1 | 58.261 | 115 | 47 | 1 | 2 | 116 | 501 | 614 | 1.41e-37 | 134 |
Msa0852200 | AT3G08680.2 | 58.261 | 115 | 47 | 1 | 2 | 116 | 501 | 614 | 1.41e-37 | 134 |
Msa0852200 | AT1G68400.1 | 54.237 | 118 | 50 | 3 | 1 | 116 | 521 | 636 | 1.51e-33 | 123 |
Msa0852200 | AT5G05160.1 | 52.991 | 117 | 50 | 3 | 3 | 116 | 502 | 616 | 2.04e-33 | 122 |
Msa0852200 | AT4G23740.1 | 53.982 | 113 | 50 | 2 | 1 | 113 | 495 | 605 | 5.12e-33 | 122 |
Msa0852200 | AT4G23740.2 | 53.982 | 113 | 50 | 2 | 1 | 113 | 495 | 605 | 5.12e-33 | 122 |
Msa0852200 | AT5G41680.2 | 54.783 | 115 | 48 | 4 | 3 | 116 | 216 | 327 | 3.92e-32 | 116 |
Msa0852200 | AT5G41680.1 | 54.783 | 115 | 48 | 4 | 3 | 116 | 242 | 353 | 6.40e-32 | 115 |
Msa0852200 | AT5G53320.1 | 49.580 | 119 | 50 | 3 | 7 | 125 | 470 | 578 | 1.65e-30 | 114 |
Msa0852200 | AT1G64210.1 | 50.877 | 114 | 51 | 2 | 7 | 116 | 469 | 581 | 6.84e-30 | 112 |
Msa0852200 | AT3G17840.1 | 48.739 | 119 | 58 | 2 | 2 | 118 | 523 | 640 | 7.77e-30 | 112 |
Msa0852200 | AT2G36570.1 | 49.618 | 131 | 49 | 4 | 1 | 116 | 517 | 645 | 1.29e-29 | 112 |
Msa0852200 | AT5G16590.1 | 43.590 | 117 | 65 | 1 | 2 | 118 | 500 | 615 | 5.53e-29 | 110 |
Msa0852200 | AT1G48480.1 | 46.429 | 112 | 59 | 1 | 2 | 113 | 529 | 639 | 5.54e-29 | 110 |
Msa0852200 | AT3G02880.1 | 41.026 | 117 | 68 | 1 | 2 | 118 | 502 | 617 | 2.91e-27 | 105 |
Msa0852200 | AT3G51740.1 | 40.000 | 110 | 62 | 2 | 7 | 116 | 703 | 808 | 3.46e-22 | 91.3 |
Msa0852200 | AT3G24660.1 | 41.322 | 121 | 67 | 4 | 2 | 120 | 537 | 655 | 1.07e-21 | 89.7 |
Msa0852200 | AT5G24100.1 | 38.393 | 112 | 65 | 3 | 7 | 118 | 506 | 613 | 4.21e-20 | 85.1 |
Msa0852200 | AT1G10850.1 | 42.056 | 107 | 60 | 1 | 7 | 113 | 523 | 627 | 4.60e-18 | 79.3 |
Msa0852200 | AT4G31250.1 | 37.719 | 114 | 67 | 3 | 7 | 118 | 531 | 642 | 1.10e-15 | 72.4 |
Msa0852200 | AT4G26540.1 | 36.667 | 120 | 67 | 4 | 1 | 116 | 927 | 1041 | 2.95e-15 | 71.2 |
Msa0852200 | AT1G66830.1 | 33.929 | 112 | 69 | 1 | 1 | 112 | 571 | 677 | 1.45e-14 | 69.3 |
Msa0852200 | AT1G08590.1 | 35.537 | 121 | 73 | 5 | 7 | 126 | 895 | 1011 | 1.52e-14 | 69.3 |
Msa0852200 | AT1G25320.1 | 31.897 | 116 | 73 | 3 | 4 | 116 | 587 | 699 | 2.36e-14 | 68.9 |
Msa0852200 | AT1G68690.1 | 36.449 | 107 | 65 | 2 | 7 | 111 | 542 | 647 | 2.79e-14 | 68.6 |
Msa0852200 | AT1G68690.3 | 36.449 | 107 | 65 | 2 | 7 | 111 | 542 | 647 | 2.79e-14 | 68.6 |
Msa0852200 | AT1G68690.2 | 36.449 | 107 | 65 | 2 | 7 | 111 | 542 | 647 | 2.79e-14 | 68.6 |
Msa0852200 | AT1G60630.1 | 37.383 | 107 | 60 | 1 | 7 | 113 | 516 | 615 | 4.93e-14 | 67.8 |
Msa0852200 | AT5G48940.1 | 36.207 | 116 | 64 | 3 | 7 | 120 | 963 | 1070 | 6.12e-14 | 67.8 |
Msa0852200 | AT1G26150.1 | 33.333 | 117 | 75 | 2 | 7 | 121 | 596 | 711 | 1.51e-13 | 66.6 |
Msa0852200 | AT1G50610.1 | 40.426 | 94 | 47 | 4 | 3 | 93 | 538 | 625 | 1.94e-13 | 66.2 |
Msa0852200 | AT5G61480.1 | 38.095 | 105 | 58 | 4 | 21 | 122 | 905 | 1005 | 2.00e-13 | 66.2 |
Msa0852200 | AT5G56040.2 | 34.426 | 122 | 71 | 4 | 1 | 118 | 926 | 1042 | 2.26e-13 | 65.9 |
Msa0852200 | AT4G28650.1 | 32.759 | 116 | 75 | 3 | 7 | 122 | 872 | 984 | 2.38e-13 | 65.9 |
Msa0852200 | AT3G24240.1 | 36.134 | 119 | 69 | 4 | 7 | 125 | 962 | 1073 | 2.52e-13 | 65.9 |
Msa0852200 | AT1G68690.4 | 36.190 | 105 | 64 | 2 | 7 | 109 | 542 | 645 | 4.16e-13 | 65.1 |
Msa0852200 | AT5G38560.1 | 34.579 | 107 | 67 | 2 | 7 | 111 | 507 | 612 | 5.16e-13 | 65.1 |
Msa0852200 | AT2G24230.1 | 35.238 | 105 | 64 | 3 | 17 | 120 | 749 | 850 | 1.18e-12 | 63.9 |
Msa0852200 | AT2G35620.3 | 35.849 | 106 | 62 | 3 | 7 | 111 | 469 | 569 | 1.43e-12 | 63.5 |
Msa0852200 | AT2G35620.1 | 35.849 | 106 | 62 | 3 | 7 | 111 | 469 | 569 | 1.43e-12 | 63.5 |
Msa0852200 | AT2G35620.2 | 35.849 | 106 | 62 | 3 | 7 | 111 | 469 | 569 | 1.43e-12 | 63.5 |
Msa0852200 | AT2G35620.4 | 35.849 | 106 | 62 | 3 | 7 | 111 | 469 | 569 | 1.43e-12 | 63.5 |
Msa0852200 | AT5G20690.1 | 32.432 | 111 | 72 | 3 | 7 | 116 | 549 | 657 | 1.48e-12 | 63.5 |
Msa0852200 | AT5G07620.1 | 29.167 | 120 | 82 | 3 | 1 | 118 | 240 | 358 | 1.78e-12 | 63.2 |
Msa0852200 | AT1G12460.2 | 30.909 | 110 | 73 | 1 | 7 | 116 | 631 | 737 | 1.87e-12 | 63.2 |
Msa0852200 | AT1G12460.1 | 30.909 | 110 | 73 | 1 | 7 | 116 | 770 | 876 | 1.90e-12 | 63.2 |
Msa0852200 | AT3G24550.1 | 37.963 | 108 | 62 | 3 | 7 | 111 | 446 | 551 | 2.82e-12 | 62.8 |
Msa0852200 | AT1G17230.2 | 38.182 | 110 | 64 | 3 | 7 | 115 | 968 | 1074 | 2.86e-12 | 62.8 |
Msa0852200 | AT1G17230.1 | 38.182 | 110 | 64 | 3 | 7 | 115 | 968 | 1074 | 3.05e-12 | 62.8 |
Msa0852200 | AT5G49660.1 | 32.203 | 118 | 74 | 4 | 1 | 117 | 825 | 937 | 3.27e-12 | 62.8 |
Msa0852200 | AT1G72180.1 | 35.897 | 117 | 53 | 4 | 7 | 113 | 854 | 958 | 3.43e-12 | 62.8 |
Msa0852200 | AT5G63930.2 | 32.231 | 121 | 76 | 4 | 7 | 125 | 910 | 1026 | 3.91e-12 | 62.4 |
Msa0852200 | AT5G63930.1 | 32.231 | 121 | 76 | 4 | 7 | 125 | 974 | 1090 | 3.93e-12 | 62.4 |
Msa0852200 | AT5G67200.1 | 33.858 | 127 | 58 | 6 | 4 | 124 | 558 | 664 | 4.64e-12 | 62.4 |
Msa0852200 | AT3G24540.1 | 38.182 | 110 | 59 | 5 | 7 | 111 | 349 | 454 | 5.15e-12 | 62.0 |
Msa0852200 | AT2G02220.1 | 37.634 | 93 | 56 | 2 | 18 | 110 | 912 | 1002 | 7.76e-12 | 61.6 |
Msa0852200 | AT2G07040.1 | 34.167 | 120 | 70 | 4 | 3 | 120 | 504 | 616 | 9.73e-12 | 61.2 |
Msa0852200 | AT1G09970.1 | 32.456 | 114 | 70 | 5 | 7 | 119 | 849 | 956 | 1.02e-11 | 61.2 |
Msa0852200 | AT1G70460.1 | 36.449 | 107 | 65 | 2 | 7 | 111 | 519 | 624 | 1.07e-11 | 61.2 |
Msa0852200 | AT4G20940.1 | 38.655 | 119 | 59 | 6 | 7 | 116 | 924 | 1037 | 1.22e-11 | 61.2 |
Msa0852200 | AT3G49670.1 | 35.000 | 120 | 70 | 4 | 7 | 124 | 859 | 972 | 1.32e-11 | 60.8 |
Msa0852200 | AT3G28040.1 | 32.743 | 113 | 73 | 2 | 7 | 119 | 898 | 1007 | 1.67e-11 | 60.8 |
Msa0852200 | AT1G09970.2 | 33.621 | 116 | 63 | 6 | 6 | 119 | 854 | 957 | 1.94e-11 | 60.5 |
Msa0852200 | AT5G62710.1 | 35.849 | 106 | 62 | 3 | 7 | 111 | 480 | 580 | 2.51e-11 | 60.1 |
Msa0852200 | AT5G62710.2 | 35.849 | 106 | 62 | 3 | 7 | 111 | 446 | 546 | 2.54e-11 | 60.1 |
Msa0852200 | AT2G01210.1 | 30.556 | 108 | 74 | 1 | 2 | 109 | 598 | 704 | 2.69e-11 | 60.1 |
Msa0852200 | AT1G31420.2 | 34.579 | 107 | 62 | 3 | 7 | 111 | 471 | 571 | 2.90e-11 | 60.1 |
Msa0852200 | AT1G31420.1 | 34.579 | 107 | 62 | 3 | 7 | 111 | 472 | 572 | 2.90e-11 | 60.1 |
Msa0852200 | AT1G31420.3 | 34.579 | 107 | 62 | 3 | 7 | 111 | 472 | 572 | 2.90e-11 | 60.1 |
Msa0852200 | AT4G02010.1 | 33.962 | 106 | 63 | 2 | 22 | 121 | 565 | 669 | 3.21e-11 | 59.7 |
Msa0852200 | AT2G33170.2 | 33.333 | 111 | 69 | 4 | 7 | 115 | 994 | 1101 | 3.71e-11 | 59.7 |
Msa0852200 | AT2G33170.1 | 33.333 | 111 | 69 | 4 | 7 | 115 | 994 | 1101 | 3.71e-11 | 59.7 |
Msa0852200 | AT1G67510.1 | 32.787 | 122 | 74 | 1 | 3 | 116 | 598 | 719 | 4.68e-11 | 59.3 |
Msa0852200 | AT1G78530.1 | 37.736 | 106 | 63 | 3 | 7 | 111 | 239 | 342 | 4.93e-11 | 58.9 |
Msa0852200 | AT5G53890.1 | 38.298 | 94 | 54 | 2 | 18 | 110 | 932 | 1022 | 5.03e-11 | 59.3 |
Msa0852200 | AT1G10620.1 | 35.514 | 107 | 66 | 2 | 7 | 111 | 536 | 641 | 9.57e-11 | 58.5 |
Find 26 sgRNAs with CRISPR-Local
Find 27 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTCTTGAAATTCTTAC+AGG | 0.215774 | 5_4:+43047152 | Msa0852200:CDS |
TTGATCTTCCAAGGTGGATT+AGG | 0.331694 | 5_4:+43047213 | Msa0852200:CDS |
AGATCATAAGCAGAATAAAA+TGG | 0.371183 | 5_4:-43047182 | None:intergenic |
CTAACAACTTCGTCCATTGT+TGG | 0.395312 | 5_4:-43047371 | None:intergenic |
AAGAGTGATGTTTACAACTT+TGG | 0.419117 | 5_4:+43047125 | Msa0852200:CDS |
TGTCAAAGGTGGAAAATAAC+AGG | 0.430650 | 5_4:+43047348 | Msa0852200:CDS |
TGAGATGCTTCAGATTGTAT+TGG | 0.469033 | 5_4:+43047319 | Msa0852200:CDS |
TTCTGAAGCGTGGTATTCGT+TGG | 0.476618 | 5_4:-43047072 | None:intergenic |
TCCAAGGTGGATTAGGTCTG+TGG | 0.506271 | 5_4:+43047220 | Msa0852200:CDS |
AGGAAGAGAAAATGTTGAAG+AGG | 0.507609 | 5_4:+43047289 | Msa0852200:CDS |
AGAAAATGTTGAAGAGGAGA+TGG | 0.512232 | 5_4:+43047295 | Msa0852200:CDS |
TTGACATGGTTGATCTTCCA+AGG | 0.529419 | 5_4:+43047204 | Msa0852200:CDS |
TTCAATGAGGAGATGATGAG+AGG | 0.529625 | 5_4:+43047269 | Msa0852200:CDS |
GGAAAATAACAGGCCAACAA+TGG | 0.542245 | 5_4:+43047358 | Msa0852200:CDS |
GGTCTGTGGTTTGTGAGGAA+TGG | 0.546647 | 5_4:+43047234 | Msa0852200:CDS |
GATTAGGTCTGTGGTTTGTG+AGG | 0.551466 | 5_4:+43047229 | Msa0852200:CDS |
TTCTGCTTATGATCTTGACA+TGG | 0.561366 | 5_4:+43047190 | Msa0852200:CDS |
TGTATTGGCTTGTGTGTCAA+AGG | 0.565320 | 5_4:+43047334 | Msa0852200:CDS |
ACCACAGACCTAATCCACCT+TGG | 0.605237 | 5_4:-43047221 | None:intergenic |
GTATTCGTTGGATCTTGACA+TGG | 0.616350 | 5_4:-43047060 | None:intergenic |
TGTGGTTTGTGAGGAATGGA+CGG | 0.622419 | 5_4:+43047238 | Msa0852200:CDS |
TTATACATTAGATTCAGACT+TGG | 0.624709 | 5_4:-43047445 | None:intergenic |
ATTGGCTTGTGTGTCAAAGG+TGG | 0.638481 | 5_4:+43047337 | Msa0852200:CDS |
ATTCAGTGACTTCTGAAGCG+TGG | 0.640127 | 5_4:-43047082 | None:intergenic |
ACATGGTTGATCTTCCAAGG+TGG | 0.663128 | 5_4:+43047207 | Msa0852200:CDS |
GTAAACATCACTCTTCTGAG+TGG | 0.720243 | 5_4:-43047117 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AGATCATAAGCAGAATAAAA+TGG | - | chr5_4:43047185-43047204 | None:intergenic | 25.0% |
AAGAGTGATGTTTACAACTT+TGG | + | chr5_4:43047125-43047144 | Msa0852200:CDS | 30.0% | |
CTTCTTCTTGAAATTCTTAC+AGG | + | chr5_4:43047152-43047171 | Msa0852200:CDS | 30.0% | |
!!! | CAGTACTCTTTTTTCAACTT+AGG | - | chr5_4:43047419-43047438 | None:intergenic | 30.0% |
TTCTGCTTATGATCTTGACA+TGG | + | chr5_4:43047190-43047209 | Msa0852200:CDS | 35.0% | |
AGGAAGAGAAAATGTTGAAG+AGG | + | chr5_4:43047289-43047308 | Msa0852200:CDS | 35.0% | |
AGAAAATGTTGAAGAGGAGA+TGG | + | chr5_4:43047295-43047314 | Msa0852200:CDS | 35.0% | |
TGAGATGCTTCAGATTGTAT+TGG | + | chr5_4:43047319-43047338 | Msa0852200:CDS | 35.0% | |
TGTCAAAGGTGGAAAATAAC+AGG | + | chr5_4:43047348-43047367 | Msa0852200:CDS | 35.0% | |
!!! | ACTCTTTTTTCAACTTAGGC+TGG | - | chr5_4:43047415-43047434 | None:intergenic | 35.0% |
GTAAACATCACTCTTCTGAG+TGG | - | chr5_4:43047120-43047139 | None:intergenic | 40.0% | |
TTGACATGGTTGATCTTCCA+AGG | + | chr5_4:43047204-43047223 | Msa0852200:CDS | 40.0% | |
! | TTGATCTTCCAAGGTGGATT+AGG | + | chr5_4:43047213-43047232 | Msa0852200:CDS | 40.0% |
TTCAATGAGGAGATGATGAG+AGG | + | chr5_4:43047269-43047288 | Msa0852200:CDS | 40.0% | |
!! | TGTATTGGCTTGTGTGTCAA+AGG | + | chr5_4:43047334-43047353 | Msa0852200:CDS | 40.0% |
GGAAAATAACAGGCCAACAA+TGG | + | chr5_4:43047358-43047377 | Msa0852200:CDS | 40.0% | |
CTAACAACTTCGTCCATTGT+TGG | - | chr5_4:43047374-43047393 | None:intergenic | 40.0% | |
!! | TTCTGAAGCGTGGTATTCGT+TGG | - | chr5_4:43047075-43047094 | None:intergenic | 45.0% |
!! | ATTCAGTGACTTCTGAAGCG+TGG | - | chr5_4:43047085-43047104 | None:intergenic | 45.0% |
ACATGGTTGATCTTCCAAGG+TGG | + | chr5_4:43047207-43047226 | Msa0852200:CDS | 45.0% | |
! | GATTAGGTCTGTGGTTTGTG+AGG | + | chr5_4:43047229-43047248 | Msa0852200:CDS | 45.0% |
! | TGTGGTTTGTGAGGAATGGA+CGG | + | chr5_4:43047238-43047257 | Msa0852200:CDS | 45.0% |
! | GACGGCTGAAGTTTTCAATG+AGG | + | chr5_4:43047256-43047275 | Msa0852200:CDS | 45.0% |
!! | ATTGGCTTGTGTGTCAAAGG+TGG | + | chr5_4:43047337-43047356 | Msa0852200:CDS | 45.0% |
!! | TCCAAGGTGGATTAGGTCTG+TGG | + | chr5_4:43047220-43047239 | Msa0852200:CDS | 50.0% |
ACCACAGACCTAATCCACCT+TGG | - | chr5_4:43047224-43047243 | None:intergenic | 50.0% | |
! | GGTCTGTGGTTTGTGAGGAA+TGG | + | chr5_4:43047234-43047253 | Msa0852200:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 43047062 | 43047454 | 43047062 | ID=Msa0852200;Name=Msa0852200 |
chr5_4 | mRNA | 43047062 | 43047454 | 43047062 | ID=Msa0852200-mRNA-1;Parent=Msa0852200;Name=Msa0852200-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|130 |
chr5_4 | exon | 43047062 | 43047454 | 43047062 | ID=Msa0852200-mRNA-1:exon:13614;Parent=Msa0852200-mRNA-1 |
chr5_4 | CDS | 43047062 | 43047454 | 43047062 | ID=Msa0852200-mRNA-1:cds;Parent=Msa0852200-mRNA-1 |
Gene Sequence |
Protein sequence |