AlfalfaGEDB | Msa0852570

M. sativa cultivar zhongmu-4 / Msa0852570

KEGG: K15032
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009303 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042254 GO:0042255 GO:0042793 GO:0042794 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF02536.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852570	XP_003615503.1	96.360	467	17	0	8	474	64	530	0.0	917

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852570	sp\|Q9ZT96\|MTEF4_ARATH	78.230	418	90	1	38	454	102	519	0.0	677

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852570	G7K677	96.360	467	17	0	8	474	64	530	0.0	917

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0852570	TR	mTERF

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852570	MtrunA17_Chr5g0428941	96.360	467	17	0	8	474	64	530	0.0	917
Msa0852570	MtrunA17_Chr1g0212691	51.659	422	198	2	29	446	49	468	1.76e-158	458
Msa0852570	MtrunA17_Chr8g0391881	45.910	379	170	2	29	403	27	374	2.22e-116	347
Msa0852570	MtrunA17_Chr4g0034981	27.887	355	248	4	80	428	235	587	3.14e-37	144
Msa0852570	MtrunA17_Chr4g0043941	24.038	312	199	4	120	429	46	321	3.02e-34	131
Msa0852570	MtrunA17_Chr4g0043941	23.182	220	160	3	85	295	43	262	3.47e-17	82.8
Msa0852570	MtrunA17_Chr2g0294671	28.082	292	200	6	150	438	210	494	1.36e-30	124
Msa0852570	MtrunA17_Chr2g0294671	21.986	282	171	7	83	319	211	488	2.15e-14	75.5
Msa0852570	MtrunA17_Chr5g0445491	25.228	329	199	7	116	436	192	481	6.17e-27	113
Msa0852570	MtrunA17_Chr5g0445491	23.932	234	169	5	78	305	221	451	7.94e-14	73.6

Showing 1 to 10 of 18 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852570	AT4G02990.2	78.230	418	90	1	38	454	102	519	0.0	677
Msa0852570	AT4G02990.1	78.230	418	90	1	38	454	102	519	0.0	677
Msa0852570	AT2G44020.1	48.815	422	210	2	32	449	57	476	4.86e-148	432
Msa0852570	AT2G21710.1	27.966	354	249	6	112	464	278	626	3.06e-42	159
Msa0852570	AT2G21710.1	24.306	288	202	6	36	308	264	550	3.16e-19	91.3
Msa0852570	AT4G38160.4	24.638	276	205	3	163	435	54	329	4.57e-33	128
Msa0852570	AT4G38160.4	21.145	227	166	5	81	295	39	264	8.41e-16	79.0
Msa0852570	AT4G38160.1	24.638	276	205	3	163	435	54	329	4.57e-33	128
Msa0852570	AT4G38160.1	21.145	227	166	5	81	295	39	264	8.41e-16	79.0
Msa0852570	AT4G38160.2	24.638	276	205	3	163	435	54	329	8.64e-33	128

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

Find 117 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATAAGTGAAGAATGC+TGG	0.479920	5_4:+43641103	None:intergenic
AAATCAACGTGCTTCAGCAT+AGG	0.578326	5_4:+43641277	None:intergenic
AAATCGAATCCAAGAATATA+AGG	0.400009	5_4:+43641523	None:intergenic
AAATTCAAAGGAAACGGGGA+GGG	0.552308	5_4:-43642197	Msa0852570:CDS
AACAACTATCCTCTTGTATT+GGG	0.341713	5_4:-43641964	Msa0852570:CDS
AACCATAAGTGAAGAATGCT+GGG	0.524107	5_4:+43641104	None:intergenic
AACTAGATTCCCGGAGATTT+TGG	0.122651	5_4:-43641641	Msa0852570:CDS
AAGGCCTTTCCATCTCACTT+TGG	0.511878	5_4:+43641146	None:intergenic
AAGTGAGATGGAAAGGCCTT+TGG	0.454521	5_4:-43641143	Msa0852570:CDS
AATCATTGAGAAGATGCCGC+AGG	0.648015	5_4:-43641320	Msa0852570:CDS

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAGAATTGGCATTTGTGTTA+GGG	+	chr5_4:43641127-43641146	None:intergenic	30.0%
TTAGAATTGGCATTTGTGTT+AGG	+	chr5_4:43641128-43641147	None:intergenic	30.0%
CAAATGCCAATTCTAACATT+TGG	-	chr5_4:43641132-43641151	Msa0852570:CDS	30.0%
GAATGACCAAATGTTAGAAT+TGG	+	chr5_4:43641141-43641160	None:intergenic	30.0%
TAACAACTATCCTCTTGTAT+TGG	-	chr5_4:43641548-43641567	Msa0852570:CDS	30.0%
AACAACTATCCTCTTGTATT+GGG	-	chr5_4:43641549-43641568	Msa0852570:CDS	30.0%
ATGTAGTGTCAAGAAGAATA+TGG	-	chr5_4:43641572-43641591	Msa0852570:CDS	30.0%
CTTGATTACCTTGGTAAATT+GGG	-	chr5_4:43641603-43641622	Msa0852570:CDS	30.0%
GTTGCTTATTTGATTGGAAT+TGG	-	chr5_4:43641819-43641838	Msa0852570:CDS	30.0%
TATTTGATTGGAATTGGTGT+TGG	-	chr5_4:43641825-43641844	Msa0852570:CDS	30.0%

Showing 1 to 10 of 322 entries

Previous1 2 3 4 5…33Next

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	43640856	43642679	43640856	ID=Msa0852570;Name=Msa0852570
chr5_4	mRNA	43640856	43642679	43640856	ID=Msa0852570-mRNA-1;Parent=Msa0852570;Name=Msa0852570-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|476
chr5_4	exon	43642674	43642679	43642674	ID=Msa0852570-mRNA-1:exon:13823;Parent=Msa0852570-mRNA-1
chr5_4	exon	43642474	43642481	43642474	ID=Msa0852570-mRNA-1:exon:13822;Parent=Msa0852570-mRNA-1
chr5_4	exon	43642315	43642323	43642315	ID=Msa0852570-mRNA-1:exon:13821;Parent=Msa0852570-mRNA-1
chr5_4	exon	43640856	43642263	43640856	ID=Msa0852570-mRNA-1:exon:13820;Parent=Msa0852570-mRNA-1
chr5_4	CDS	43642674	43642679	43642674	ID=Msa0852570-mRNA-1:cds;Parent=Msa0852570-mRNA-1
chr5_4	CDS	43642474	43642481	43642474	ID=Msa0852570-mRNA-1:cds;Parent=Msa0852570-mRNA-1
chr5_4	CDS	43642315	43642323	43642315	ID=Msa0852570-mRNA-1:cds;Parent=Msa0852570-mRNA-1
chr5_4	CDS	43640856	43642263	43640856	ID=Msa0852570-mRNA-1:cds;Parent=Msa0852570-mRNA-1

Gene Sequence

>Msa0852570

ATGATTATTCAATGGAAGATAAGGACCGGTGCTAGTGATTCGCGGGGATCCAAACGGGACTCTGGCGAAATTCAAAGGAAACGGGGAGGGGCATCGTCGTTGTATGCTGGTTATGCTCGTCCGAGTTTATCTGAAATGAAGAAAGATAAGGTGACATTGCGTGAAATTGTTTATGAGTTCTTGCGAGGAATCGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTTACGGTTGATGTTATGAAGGAGCGCGTTGATTTTCTTCATAGTTTGGGGCTTACGATTGAAGATATTAACAACTATCCTCTTGTATTGGGATGTAGTGTCAAGAAGAATATGGTTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTTAGGAAATCCACGTTAACGCAGTTCTTGCGGAGATATCCACAAGTGCTTCATTCTAGTGTGGTTGTGGATCTTGTGCCGGTGGTCAAGTATCTTCAGGGGATGGATATCAAGCCGGATGATATTCCTCGTGTTCTTGAGAGGTATCCTGAAGTGTTGGGATTCAAACTTGAGGGAACCATGAGTACATCTGTTGCTTATTTGATTGGAATTGGTGTTGGAAGAAGAGAACTTGGAGGTATCTTAACTAGATTCCCGGAGATTTTGGGGATGCGGGTTGGTAGAGTCATCAAGCCTTTTGTGGAGTATCTGGAAAGCTTGGGTATTCCAAGGCTAGCTATTGCTAGACTGATAGAGACACAACCTTATATTCTTGGATTCGATTTGGACGAGAAAGTGAAGCCAAACGTCAAATCCCTCGAAGAGTTTAATGTTCGGCATACATCGCTTGCCTCTATAATTGCTCAGTATCCTGACATCATTGGAACCGACCTAGAGCCGAAGCTTGCAGATAAGAGAAGTGTGCTCAATTCTGTGCTTGATTTAGATGCTGAGGATTTCGGCTTAATCATTGAGAAGATGCCGCAGGTAGTTAGCCTCAGTACTACACCTATGCTGAAGCACGTTGATTTTCTTAAGGATTGTGGGTTTTCTGTGGATCAAATAAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTCGATTACTTCCAAAGTGAGATGGAAAGGCCTTTGGAAGATTTGGTTGAATTCCCAGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAACCTAGGCATAACATGGTTACTAAGAAAGGATTAAAGTGTTCTCTGGCTTGGATGCTTAACTGTTCTGATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGATATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATACATTGATGCGACCAAGGAGCGATGAATCAGATTCTGATTATGAAGACAGTGATTTTGATGATGATGATGATGATGATGAGTAA

Protein sequence

>Msa0852570

MIIQWKIRTGASDSRGSKRDSGEIQRKRGGASSLYAGYARPSLSEMKKDKVTLREIVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLRRYPQVLHSSVVVDLVPVVKYLQGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRELGGILTRFPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIETQPYILGFDLDEKVKPNVKSLEEFNVRHTSLASIIAQYPDIIGTDLEPKLADKRSVLNSVLDLDAEDFGLIIEKMPQVVSLSTTPMLKHVDFLKDCGFSVDQIRKMIVGCPQLLALNIDIMKLSFDYFQSEMERPLEDLVEFPAFFTYGLESTIKPRHNMVTKKGLKCSLAWMLNCSDEKFEQRMDYDTIDMEEMEMEPSFDMNTLMRPRSDESDSDYEDSDFDDDDDDDE*