AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0852750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0852750 MtrunA17_Chr5g0429341 97.805 410 8 1 1 409 1 410 0.0 822
Msa0852750 MtrunA17_Chr3g0120711 68.434 415 119 8 1 408 1 410 0.0 531
Msa0852750 MtrunA17_Chr2g0322941 50.833 120 57 1 1 120 40 157 2.91e-35 130
Msa0852750 MtrunA17_Chr1g0209071 49.138 116 55 2 1 115 1 113 6.19e-30 118
Msa0852750 MtrunA17_Chr7g0268691 49.505 101 50 1 5 105 20 119 4.38e-29 116
Msa0852750 MtrunA17_Chr7g0268691 54.902 51 23 0 343 393 319 369 2.29e-11 65.1
Msa0852750 MtrunA17_Chr2g0322951 50.000 98 42 2 309 403 50 143 1.10e-24 99.0
Msa0852750 MtrunA17_Chr7g0251781 41.509 106 56 1 5 104 5 110 2.72e-21 94.7
Msa0852750 MtrunA17_Chr7g0251781 67.347 49 16 0 348 396 337 385 1.16e-14 75.1
Msa0852750 MtrunA17_Chr1g0150471 33.133 166 100 3 4 162 5 166 6.51e-20 89.7
Msa0852750 MtrunA17_Chr1g0150471 41.975 81 39 1 313 393 224 296 4.18e-12 66.6
Msa0852750 MtrunA17_Chr3g0136701 43.333 90 51 0 4 93 5 94 4.48e-19 87.0
Msa0852750 MtrunA17_Chr3g0136701 54.902 51 23 0 349 399 229 279 1.54e-11 64.7
Msa0852750 MtrunA17_Chr4g0072871 43.333 90 51 0 4 93 21 110 1.31e-18 86.7
Msa0852750 MtrunA17_Chr4g0072871 61.702 47 18 0 351 397 297 343 1.97e-11 65.1
Msa0852750 MtrunA17_Chr7g0220721 42.857 91 52 0 5 95 26 116 2.28e-17 83.2
Msa0852750 MtrunA17_Chr4g0033641 35.417 96 53 1 1 87 1 96 6.72e-14 70.9
Msa0852750 MtrunA17_Chr3g0145061 31.282 195 102 8 1 182 1 176 8.14e-14 70.5
Msa0852750 MtrunA17_Chr4g0035651 36.082 97 52 1 1 87 1 97 1.50e-13 69.7
Msa0852750 MtrunA17_Chr1g0155811 32.990 97 55 1 1 87 1 97 5.27e-13 68.9
Msa0852750 MtrunA17_Chr3g0142221 31.633 98 56 1 1 87 1 98 3.67e-12 65.5
Msa0852750 MtrunA17_Chr2g0329511 33.333 96 55 1 1 87 1 96 9.74e-12 64.7
Msa0852750 MtrunA17_Chr5g0405151 36.905 84 45 1 1 76 1 84 1.83e-11 62.8
Msa0852750 MtrunA17_Chr2g0314671 33.333 96 55 1 1 87 1 96 2.65e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0852750 AT3G07650.3 53.066 424 130 13 1 408 1 371 2.03e-137 398
Msa0852750 AT3G07650.2 53.066 424 130 13 1 408 1 371 2.03e-137 398
Msa0852750 AT3G07650.4 53.066 424 130 13 1 408 1 371 2.03e-137 398
Msa0852750 AT3G07650.1 53.066 424 130 13 1 408 1 371 2.03e-137 398
Msa0852750 AT5G48250.1 52.706 425 131 14 1 408 1 372 2.11e-135 393
Msa0852750 AT4G15250.1 54.717 106 46 1 1 106 1 104 4.05e-35 132
Msa0852750 AT4G15250.1 55.319 94 42 0 309 402 233 326 1.24e-21 95.5
Msa0852750 AT2G33500.1 49.020 102 52 0 5 106 12 113 3.05e-33 129
Msa0852750 AT2G33500.1 70.455 44 13 0 351 394 356 399 2.86e-13 71.2
Msa0852750 AT2G33500.2 49.020 102 52 0 5 106 12 113 3.32e-33 129
Msa0852750 AT2G33500.2 70.455 44 13 0 351 394 355 398 2.85e-13 71.2
Msa0852750 AT3G21880.3 50.000 116 56 1 1 116 5 118 9.84e-33 127
Msa0852750 AT3G21880.3 52.174 115 50 3 292 406 256 365 9.23e-26 107
Msa0852750 AT3G21880.2 50.000 116 56 1 1 116 5 118 9.84e-33 127
Msa0852750 AT3G21880.2 52.174 115 50 3 292 406 256 365 9.23e-26 107
Msa0852750 AT3G21880.1 50.000 116 56 1 1 116 1 114 1.01e-32 127
Msa0852750 AT3G21880.1 52.174 115 50 3 292 406 252 361 9.91e-26 107
Msa0852750 AT1G28050.1 41.935 124 70 1 5 128 9 130 2.33e-31 124
Msa0852750 AT1G28050.1 30.337 178 110 4 224 396 261 429 2.56e-13 71.6
Msa0852750 AT1G68190.1 46.296 108 56 1 1 108 10 115 1.82e-28 115
Msa0852750 AT1G68190.3 46.296 108 56 1 1 108 10 115 1.82e-28 115
Msa0852750 AT1G68190.2 46.296 108 56 1 1 108 39 144 2.64e-28 115
Msa0852750 AT2G47890.2 49.020 102 50 1 4 105 12 111 1.74e-27 109
Msa0852750 AT2G47890.3 49.020 102 50 1 4 105 12 111 5.11e-27 109
Msa0852750 AT2G47890.1 49.020 102 50 1 4 105 12 111 6.46e-27 110
Msa0852750 AT2G47890.1 51.923 52 25 0 345 396 280 331 6.84e-11 63.5
Msa0852750 AT5G57660.1 27.363 402 198 10 5 401 22 334 1.52e-26 109
Msa0852750 AT5G24930.1 45.556 90 49 0 4 93 5 94 1.31e-20 92.8
Msa0852750 AT5G24930.1 60.784 51 20 0 347 397 290 340 1.56e-12 68.9
Msa0852750 AT2G24790.2 43.333 90 51 0 4 93 7 96 3.80e-19 85.9
Msa0852750 AT2G24790.1 41.346 104 59 1 4 105 7 110 4.12e-19 87.4
Msa0852750 AT2G24790.1 46.377 69 37 0 333 401 210 278 5.03e-12 66.6
Msa0852750 AT5G15840.1 45.055 91 50 0 5 95 20 110 1.21e-17 84.3
Msa0852750 AT5G15840.2 45.055 91 50 0 5 95 20 110 1.63e-17 82.4
Msa0852750 AT5G15850.1 45.349 86 47 0 5 90 12 97 6.19e-17 82.0
Msa0852750 AT5G15850.1 50.820 61 28 1 333 393 269 327 2.86e-11 65.1
Msa0852750 AT3G02380.1 38.835 103 57 1 5 101 16 118 1.32e-15 78.2
Msa0852750 AT3G02380.1 66.667 42 14 0 352 393 278 319 1.91e-11 65.5
Msa0852750 AT1G06040.2 35.417 96 53 1 1 87 1 96 1.44e-13 68.9
Msa0852750 AT1G06040.1 35.417 96 53 1 1 87 1 96 2.78e-13 69.7
Msa0852750 AT2G31380.1 34.375 96 54 1 1 87 1 96 2.92e-13 69.3
Msa0852750 AT4G38960.1 26.857 175 106 4 1 166 1 162 3.99e-12 65.1
Msa0852750 AT4G38960.6 26.857 175 106 4 1 166 1 162 3.99e-12 65.1
Msa0852750 AT1G78600.1 31.250 96 57 1 1 87 1 96 5.77e-12 66.6
Msa0852750 AT1G78600.2 31.250 96 57 1 1 87 1 96 6.24e-12 66.6
Msa0852750 AT1G75540.1 33.333 99 54 1 1 87 1 99 6.97e-12 66.6
Msa0852750 AT2G21320.1 36.842 95 50 2 1 87 1 93 8.63e-11 60.8

Find 129 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGACACACTCTTGCTTTC+TGG 0.079702 5_4:-43983962 None:intergenic
AATAGAACAATTACCCTTTA+TGG 0.108259 5_4:-43982515 None:intergenic
CTTTCTCTTGAAGAAATTAT+AGG 0.213186 5_4:-43987760 None:intergenic
ACTGCCAATTCATTGGATTA+TGG 0.234486 5_4:-43987798 None:intergenic
GTTAGATTATAGATTAGATA+TGG 0.249687 5_4:-43982159 None:intergenic
AGAAGGGATGTCTGAGAAAA+AGG 0.263603 5_4:-43983864 None:intergenic
CTTCCGAGCTTTCTTCAATA+TGG 0.271446 5_4:+43983840 Msa0852750:CDS
GAGAAAGATAGAAGAACAAT+AGG 0.277201 5_4:+43982223 Msa0852750:five_prime_UTR
GTTTAGCTGACATCACAATT+TGG 0.280813 5_4:-43987864 None:intergenic
GAGAAGAATGATGCAAATTA+TGG 0.296018 5_4:-43982113 None:intergenic
GATGCAGCATTGCTGCATTC+TGG 0.314142 5_4:-43986105 None:intergenic
AGTGTAAACTCAGCAGCTTC+TGG 0.321377 5_4:-43987624 None:intergenic
CAATCAATCAATTGCTTCTC+TGG 0.329875 5_4:+43983806 Msa0852750:CDS
TTCTCACAGGGGAGCCTCCC+TGG 0.331546 5_4:+43986262 Msa0852750:CDS
CAATGCTGTCATGCGTTATA+AGG 0.336608 5_4:+43986326 Msa0852750:CDS
TTTGACATGAAGATTCTTAT+GGG 0.352559 5_4:+43982463 Msa0852750:intron
CTGGTTCAAAATACGGGGTT+TGG 0.355047 5_4:-43984059 None:intergenic
TACCTTAGGCATAAGTTCAT+TGG 0.357652 5_4:-43984095 None:intergenic
CTTTCCGTAAAATAAATAAC+TGG 0.358970 5_4:-43986159 None:intergenic
AGCCTATACTGCCAATTCAT+TGG 0.359309 5_4:-43987805 None:intergenic
CACTTTGTCAGAACTGTGAT+TGG 0.369730 5_4:+43983741 Msa0852750:CDS
TTGCGGAGACCAGAGGTCTT+TGG 0.371869 5_4:+43983565 Msa0852750:CDS
TTCTGCTGTGTTTATTGAGA+TGG 0.379722 5_4:-43982196 None:intergenic
TCACATGCTTCACCCGTAGA+AGG 0.388659 5_4:-43983881 None:intergenic
ACAATTCATTGTCAGTCCTT+TGG 0.393417 5_4:+43987975 Msa0852750:three_prime_UTR
CTCTGGCAGTTCTACATACA+TGG 0.395108 5_4:-43988053 None:intergenic
GCAGATTGAATAGAATTCTC+AGG 0.403505 5_4:-43986294 None:intergenic
AAAGCCATAATCCAATGAAT+TGG 0.409600 5_4:+43987794 Msa0852750:three_prime_UTR
AAAGGCCGGTTCGTCAAAGC+TGG 0.416312 5_4:+43987569 Msa0852750:CDS
TTTCCCCAGCTTTGACGAAC+CGG 0.416476 5_4:-43987574 None:intergenic
CAGCTTCTGGTTTGACTCAA+AGG 0.419857 5_4:-43987611 None:intergenic
CGGGCGCCTGGTTCAAAATA+CGG 0.425108 5_4:-43984066 None:intergenic
TTGCTTCTCTGGCTGTCCTT+CGG 0.430721 5_4:+43983817 Msa0852750:CDS
CATAAGTTCATTGGAAGATC+CGG 0.431154 5_4:-43984086 None:intergenic
TTTCTCAGACATCCCTTCTA+CGG 0.434188 5_4:+43983868 Msa0852750:CDS
TTGTCCTGCATACATGTAGA+TGG 0.439122 5_4:+43988114 Msa0852750:three_prime_UTR
CCAGAAAGCAAGAGTGTGTC+TGG 0.441871 5_4:+43983962 Msa0852750:CDS
GACACTTATCATGCCATCTC+TGG 0.444997 5_4:-43988070 None:intergenic
GGGCGCCTGGTTCAAAATAC+GGG 0.445144 5_4:-43984065 None:intergenic
ATTCTCAGGGCAAGGACACC+AGG 0.450414 5_4:-43986280 None:intergenic
AGCGAAGTGTGGTTTAAAGA+TGG 0.451015 5_4:+43983526 Msa0852750:exon
TTAGATTATAGATTAGATAT+GGG 0.459668 5_4:-43982158 None:intergenic
TAGTATATTCTTCTAAAGAA+TGG 0.459767 5_4:+43987693 Msa0852750:three_prime_UTR
AGAACAGTGACAACAGTGCC+AGG 0.462494 5_4:+43983933 Msa0852750:CDS
TCAGAAAACGCGTGAAAGGC+CGG 0.466338 5_4:+43987555 Msa0852750:CDS
TTGGATATCCTTCGCGGTGA+AGG 0.469982 5_4:-43987845 None:intergenic
AGCTTCTGGTTTGACTCAAA+GGG 0.472965 5_4:-43987610 None:intergenic
TTCTCAGACATCCCTTCTAC+GGG 0.474377 5_4:+43983869 Msa0852750:CDS
TTTGGCCACAATATTGTTCA+CGG 0.478015 5_4:+43987993 Msa0852750:three_prime_UTR
ATTCAAGGCACATTGCTTGA+AGG 0.478106 5_4:-43987902 None:intergenic
ATCCAATGAATTGGCAGTAT+AGG 0.478572 5_4:+43987803 Msa0852750:three_prime_UTR
CATTGGAAGATCCGGGCGCC+TGG 0.483294 5_4:-43984078 None:intergenic
CTGTGTTTATTGAGATGGAT+TGG 0.486083 5_4:-43982191 None:intergenic
TTCAAGGCACATTGCTTGAA+GGG 0.487363 5_4:-43987901 None:intergenic
AGAAAGTAAGATATGCTTCT+CGG 0.490575 5_4:+43987516 Msa0852750:CDS
TAGTGCAGGAGCCTTTCTGC+TGG 0.501364 5_4:-43985124 None:intergenic
CACAATTTGGATATCCTTCG+CGG 0.503266 5_4:-43987851 None:intergenic
CTTGCTTTCTGGAGGAACCC+TGG 0.509409 5_4:-43983951 None:intergenic
CGGGGTTTGGCACTTGACTC+AGG 0.510138 5_4:-43984046 None:intergenic
TCGATCACACGACAAACATA+AGG 0.512174 5_4:-43983612 None:intergenic
TTGCCTCTTGTGTGTTGAAG+AGG 0.512520 5_4:-43983786 None:intergenic
TAGATTAGATATGGGAGGGT+TGG 0.513153 5_4:-43982150 None:intergenic
TGATTTCAACATAGATGAGA+TGG 0.515486 5_4:+43985170 Msa0852750:CDS
ATGAATTGGCAGTATAGGCT+TGG 0.517480 5_4:+43987808 Msa0852750:three_prime_UTR
ACTTCTTCAATGCTTCTCAC+AGG 0.517555 5_4:+43986249 Msa0852750:CDS
GCGAAGTGTGGTTTAAAGAT+GGG 0.523464 5_4:+43983527 Msa0852750:exon
CTCTTGTGTGTTGAAGAGGA+TGG 0.523560 5_4:-43983782 None:intergenic
ATAAACGGAATCAAAATTCA+AGG 0.524662 5_4:-43987917 None:intergenic
TGTTAACGCCAGAAAATGAA+AGG 0.527986 5_4:-43986191 None:intergenic
AGAAAGATAGAAGAACAATA+GGG 0.528199 5_4:+43982224 Msa0852750:five_prime_UTR
TTCCAATGAACTTATGCCTA+AGG 0.528385 5_4:+43984093 Msa0852750:CDS
GGCTCCTGTGTTAAATCAGA+CGG 0.531820 5_4:-43987739 None:intergenic
AACTCCATCTACATGTATGC+AGG 0.534293 5_4:-43988118 None:intergenic
ATAAGTTCATTGGAAGATCC+GGG 0.534550 5_4:-43984085 None:intergenic
GGCAGTACACCAAAGACCTC+TGG 0.535687 5_4:-43983574 None:intergenic
TAATTTCTTCAAGAGAAAGA+AGG 0.538306 5_4:+43987764 Msa0852750:three_prime_UTR
TCTTATGGGAGCTTGAGATA+AGG 0.538875 5_4:+43982477 Msa0852750:five_prime_UTR
CTTCTTCAATGCTTCTCACA+GGG 0.540534 5_4:+43986250 Msa0852750:CDS
GATATGCTTCTCGGAAGGCA+AGG 0.543762 5_4:+43987525 Msa0852750:CDS
ATTATAGATTAGATATGGGA+GGG 0.544249 5_4:-43982154 None:intergenic
TCCGTTTATGTGGCAAAACA+TGG 0.545957 5_4:+43987931 Msa0852750:three_prime_UTR
GATGTCAGAAAACGCGTGAA+AGG 0.547529 5_4:+43987551 Msa0852750:CDS
AACTGTGATTGGTCAGCTCA+TGG 0.551188 5_4:+43983752 Msa0852750:CDS
CACATGCTTCACCCGTAGAA+GGG 0.554759 5_4:-43983880 None:intergenic
CAGCATTGCTGCATTCTGGT+TGG 0.554970 5_4:-43986101 None:intergenic
TGTGTCTGGTTCAGCTCAAG+TGG 0.560306 5_4:+43983976 Msa0852750:CDS
ATTGGCAGTATAGGCTTGGA+AGG 0.564149 5_4:+43987812 Msa0852750:three_prime_UTR
AAAGACATGTCTGCTAGTGC+TGG 0.564402 5_4:+43985291 Msa0852750:CDS
TCAACACACCTCACATATGC+AGG 0.564586 5_4:-43983707 None:intergenic
TTATCATCTTCACATAGTGC+AGG 0.566113 5_4:-43985138 None:intergenic
CAGATTGAATAGAATTCTCA+GGG 0.567877 5_4:-43986293 None:intergenic
TCAAGGCGCTGTTGCTGCTG+AGG 0.568931 5_4:+43985326 Msa0852750:CDS
AGTGCAGGAGCCTTTCTGCT+GGG 0.574032 5_4:-43985123 None:intergenic
ATATGCTTCTCGGAAGGCAA+GGG 0.575562 5_4:+43987526 Msa0852750:CDS
GTTACTATGTCCCAGCAGAA+AGG 0.575589 5_4:+43985113 Msa0852750:intron
GGGCCATATTGAAGAAAGCT+CGG 0.577030 5_4:-43983843 None:intergenic
CAAACATAAGGAAGCAGCAT+CGG 0.579320 5_4:-43983600 None:intergenic
GATTATAGATTAGATATGGG+AGG 0.581205 5_4:-43982155 None:intergenic
TGAATAGAATTCTCAGGGCA+AGG 0.581628 5_4:-43986288 None:intergenic
AAGGCCGGTTCGTCAAAGCT+GGG 0.589643 5_4:+43987570 Msa0852750:CDS
GACACACTCTTGCTTTCTGG+AGG 0.592085 5_4:-43983959 None:intergenic
GTATGTAGAACTGCCAGAGA+TGG 0.594937 5_4:+43988057 Msa0852750:three_prime_UTR
GTGTGTTGAAGAGGATGGAT+TGG 0.598104 5_4:-43983777 None:intergenic
TCAAGGCACATTGCTTGAAG+GGG 0.599759 5_4:-43987900 None:intergenic
AGATATGGGAGGGTTGGTGT+AGG 0.607336 5_4:-43982144 None:intergenic
TTAAAGGAGCAAGCGAAGTG+TGG 0.607491 5_4:+43983515 Msa0852750:intron
GCAAACCGTGAACAATATTG+TGG 0.607506 5_4:-43987998 None:intergenic
TGTGAAGATGATAAGTTGCT+TGG 0.611126 5_4:+43985147 Msa0852750:CDS
TTCTCAGGGCAAGGACACCA+GGG 0.615035 5_4:-43986279 None:intergenic
AGTAAGATATGCTTCTCGGA+AGG 0.619208 5_4:+43987520 Msa0852750:CDS
GAAGAAAGCTCGGAAGCCGA+AGG 0.625937 5_4:-43983833 None:intergenic
CATCCTCTTCAACACACAAG+AGG 0.627085 5_4:+43983783 Msa0852750:CDS
GTTAACAAAGATACTAGTGC+TGG 0.627470 5_4:+43986207 Msa0852750:CDS
ACACGCGTCCTTCACCGCGA+AGG 0.639767 5_4:+43987837 Msa0852750:three_prime_UTR
GGCGCCTGGTTCAAAATACG+GGG 0.642690 5_4:-43984064 None:intergenic
GCTGGTGATTCAAATTGTCA+AGG 0.642760 5_4:+43985309 Msa0852750:CDS
GTGAACAATATTGTGGCCAA+AGG 0.643232 5_4:-43987991 None:intergenic
CAAGAACACTTGTATGCGAG+AGG 0.643376 5_4:+43983672 Msa0852750:CDS
TCTGGCAGTTCTACATACAT+GGG 0.655339 5_4:-43988052 None:intergenic
TTCTTCAATGCTTCTCACAG+GGG 0.656918 5_4:+43986251 Msa0852750:CDS
AGGCCGGTTCGTCAAAGCTG+GGG 0.660571 5_4:+43987571 Msa0852750:CDS
GAACAGTGACAACAGTGCCA+GGG 0.668906 5_4:+43983934 Msa0852750:CDS
TTGGCAGTATAGGCTTGGAA+GGG 0.669630 5_4:+43987813 Msa0852750:three_prime_UTR
GAAGCATGTGAACATAAACT+CGG 0.675189 5_4:+43983893 Msa0852750:CDS
ATAAGGAAGCAGCATCGGAG+CGG 0.698842 5_4:-43983595 None:intergenic
ATTTACAACCTGCATATGTG+AGG 0.728365 5_4:+43983699 Msa0852750:CDS
CAAACCGTCTGATTTAACAC+AGG 0.728745 5_4:+43987735 Msa0852750:three_prime_UTR
TCAGGGCAAGGACACCAGGG+AGG 0.737032 5_4:-43986276 None:intergenic
GCTGGTGACTATCAAGAGTG+TGG 0.743394 5_4:+43986225 Msa0852750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGTCTTTATTAAAAAA+CGG - chr5_4:43986599-43986618 None:intergenic 10.0%
!! TTAGATTATAGATTAGATAT+GGG - chr5_4:43982161-43982180 None:intergenic 15.0%
!!! ATTGTGGTTATATTTTTATT+TGG + chr5_4:43982625-43982644 Msa0852750:intron 15.0%
!!! AATTTTTTGTACTATAATGA+TGG + chr5_4:43982654-43982673 Msa0852750:intron 15.0%
!! TTAATGTTATTGTTTGATAT+TGG + chr5_4:43983101-43983120 Msa0852750:intron 15.0%
!! TTTATATGTTAGTTGTTTAA+TGG + chr5_4:43984357-43984376 Msa0852750:intron 15.0%
!!! ACATACTTTTTTAATCAAAT+TGG - chr5_4:43984591-43984610 None:intergenic 15.0%
!! AAATAAAATAATACTACTTG+TGG + chr5_4:43986956-43986975 Msa0852750:intron 15.0%
!! GTTAGATTATAGATTAGATA+TGG - chr5_4:43982162-43982181 None:intergenic 20.0%
!!! AAAGTTGAAATTTTCCATAA+AGG + chr5_4:43982501-43982520 Msa0852750:five_prime_UTR 20.0%
!!! AAGTTGAAATTTTCCATAAA+GGG + chr5_4:43982502-43982521 Msa0852750:five_prime_UTR 20.0%
!! GGTATGTTATTGAAAATTAA+AGG - chr5_4:43983026-43983045 None:intergenic 20.0%
!! TAATAATTTGAGAAAATGGA+AGG + chr5_4:43983252-43983271 Msa0852750:intron 20.0%
!! AATAATTTGAGAAAATGGAA+GGG + chr5_4:43983253-43983272 Msa0852750:intron 20.0%
!!! CAGCTTCAATATTTTATTTT+AGG + chr5_4:43983436-43983455 Msa0852750:intron 20.0%
!!! TGGGATTGTTATTTAATTAA+AGG + chr5_4:43983499-43983518 Msa0852750:intron 20.0%
!! TTATCTATAACTTAAGATAG+AGG - chr5_4:43984252-43984271 None:intergenic 20.0%
!! CATTCATATCAATTACATAA+TGG - chr5_4:43984653-43984672 None:intergenic 20.0%
!! TGAATTAGTTACTGTATTTA+TGG + chr5_4:43984682-43984701 Msa0852750:intron 20.0%
!! AAATGAATATAAAGGACTTA+AGG - chr5_4:43985850-43985869 None:intergenic 20.0%
!! AAACCTTCAAATGAATATAA+AGG - chr5_4:43985858-43985877 None:intergenic 20.0%
!! AATACAAAACCTATAAAACT+AGG - chr5_4:43986007-43986026 None:intergenic 20.0%
!!! TATCTAAACTTCTGTTTTTA+GGG + chr5_4:43986051-43986070 Msa0852750:intron 20.0%
!!! TGAACCAGTTATTTATTTTA+CGG + chr5_4:43986155-43986174 Msa0852750:CDS 20.0%
!!! TAATAAAGACATTTAAAGCT+AGG + chr5_4:43986604-43986623 Msa0852750:intron 20.0%
!!! GAAAGAATAAGAGATTTTTA+AGG - chr5_4:43986739-43986758 None:intergenic 20.0%
!!! TATTTATAGTTTGCTTTTGT+TGG + chr5_4:43986762-43986781 Msa0852750:intron 20.0%
!!! AAAGGTATTAAATATTGTAC+TGG - chr5_4:43987223-43987242 None:intergenic 20.0%
!!! TGCAACTACTTTAAAAATAA+GGG - chr5_4:43987257-43987276 None:intergenic 20.0%
!!! TTGCAACTACTTTAAAAATA+AGG - chr5_4:43987258-43987277 None:intergenic 20.0%
!! TTAAAGTAGTTGCAAATATA+TGG + chr5_4:43987263-43987282 Msa0852750:intron 20.0%
!!! TGCTATTTTGCATTTAAAAT+TGG + chr5_4:43987330-43987349 Msa0852750:intron 20.0%
!!! TAGTATATTCTTCTAAAGAA+TGG + chr5_4:43987693-43987712 Msa0852750:three_prime_UTR 20.0%
! ATTATAGATTAGATATGGGA+GGG - chr5_4:43982157-43982176 None:intergenic 25.0%
! AGAAAGATAGAAGAACAATA+GGG + chr5_4:43982224-43982243 Msa0852750:five_prime_UTR 25.0%
! TACAAGATCTATAAGGAAAA+GGG - chr5_4:43982356-43982375 None:intergenic 25.0%
!! TTTTGACATGAAGATTCTTA+TGG + chr5_4:43982462-43982481 Msa0852750:intron 25.0%
! TTTGACATGAAGATTCTTAT+GGG + chr5_4:43982463-43982482 Msa0852750:intron 25.0%
! AATAGAACAATTACCCTTTA+TGG - chr5_4:43982518-43982537 None:intergenic 25.0%
! TTGATGTTGTAATGAAATTG+TGG + chr5_4:43982609-43982628 Msa0852750:intron 25.0%
!!! GTGGTTATATTTTTATTTGG+TGG + chr5_4:43982628-43982647 Msa0852750:intron 25.0%
!!! GTTATATTTTTATTTGGTGG+TGG + chr5_4:43982631-43982650 Msa0852750:intron 25.0%
!!! TGGAAATGCATTTTTATTTG+AGG + chr5_4:43982674-43982693 Msa0852750:intron 25.0%
! TTGTGAGTTTGACAAAATTA+CGG + chr5_4:43982836-43982855 Msa0852750:intron 25.0%
! TAGAAAGAATCATATGCTAT+TGG + chr5_4:43982968-43982987 Msa0852750:intron 25.0%
!! ATGAATTTTTATGCATCTCT+AGG - chr5_4:43983047-43983066 None:intergenic 25.0%
!! AAGAGACATCTCTAAAAAAA+GGG - chr5_4:43983082-43983101 None:intergenic 25.0%
!! AAAGAGACATCTCTAAAAAA+AGG - chr5_4:43983083-43983102 None:intergenic 25.0%
! AACTAGTAATTTATGGAACT+GGG - chr5_4:43983150-43983169 None:intergenic 25.0%
!! CCATTTTCTCAAATTATTAC+CGG - chr5_4:43983251-43983270 None:intergenic 25.0%
! AAGCTATTAATTAGATGTGA+TGG + chr5_4:43984277-43984296 Msa0852750:intron 25.0%
!! TTCTAGTCAAATGATTCTTT+TGG + chr5_4:43984404-43984423 Msa0852750:intron 25.0%
! TAATTGATATGAATGTCGTT+AGG + chr5_4:43984658-43984677 Msa0852750:intron 25.0%
! GAACAATTATACATGTACAT+AGG - chr5_4:43984866-43984885 None:intergenic 25.0%
! TGTACATGTATAATTGTTCT+TGG + chr5_4:43984867-43984886 Msa0852750:intron 25.0%
! GTACATGTATAATTGTTCTT+GGG + chr5_4:43984868-43984887 Msa0852750:intron 25.0%
! CATGAGAGATTAAATAAGAA+AGG - chr5_4:43985082-43985101 None:intergenic 25.0%
!! TTTTGAACTTGAGAACTATA+CGG + chr5_4:43985194-43985213 Msa0852750:CDS 25.0%
!!! TCTGAAGAGTTTTTTGAAAA+TGG + chr5_4:43985243-43985262 Msa0852750:CDS 25.0%
! CCAAAATTATAGCTAACAAA+GGG - chr5_4:43985368-43985387 None:intergenic 25.0%
!! TATTAAGTGTTGTCAAATAG+TGG + chr5_4:43985590-43985609 Msa0852750:intron 25.0%
! AGTCCTTTATATTCATTTGA+AGG + chr5_4:43985852-43985871 Msa0852750:intron 25.0%
!!! GTATCTAAACTTCTGTTTTT+AGG + chr5_4:43986050-43986069 Msa0852750:intron 25.0%
!!! ATCTAAACTTCTGTTTTTAG+GGG + chr5_4:43986052-43986071 Msa0852750:intron 25.0%
! CTTTCCGTAAAATAAATAAC+TGG - chr5_4:43986162-43986181 None:intergenic 25.0%
!!! CAGTTATTTATTTTACGGAA+AGG + chr5_4:43986160-43986179 Msa0852750:CDS 25.0%
! GATACTATTTACATATCCAA+TGG + chr5_4:43986384-43986403 Msa0852750:intron 25.0%
! TAAAATTATATCAACGCCAT+TGG - chr5_4:43986403-43986422 None:intergenic 25.0%
!! TAGGAATGTGTTATTATTCA+TGG - chr5_4:43986555-43986574 None:intergenic 25.0%
! TCTCTATTGATCTTATTCTT+AGG + chr5_4:43986702-43986721 Msa0852750:intron 25.0%
!!! AAGAGATTTTTAAGGTAGTT+TGG - chr5_4:43986731-43986750 None:intergenic 25.0%
! AATAATACTACTTGTGGAAA+TGG + chr5_4:43986962-43986981 Msa0852750:intron 25.0%
! TATTTAATACCTTTCTCCAA+TGG + chr5_4:43987229-43987248 Msa0852750:intron 25.0%
!!! TTTAAAAATAAGGGTACCAT+TGG - chr5_4:43987248-43987267 None:intergenic 25.0%
! TTACTTATAATCTCAAAGCT+TGG + chr5_4:43987441-43987460 Msa0852750:intron 25.0%
!! TTTTAACCATGTTCAACAAA+AGG + chr5_4:43987647-43987666 Msa0852750:three_prime_UTR 25.0%
! CTTTCTCTTGAAGAAATTAT+AGG - chr5_4:43987763-43987782 None:intergenic 25.0%
! TAATTTCTTCAAGAGAAAGA+AGG + chr5_4:43987764-43987783 Msa0852750:three_prime_UTR 25.0%
! ATAAACGGAATCAAAATTCA+AGG - chr5_4:43987920-43987939 None:intergenic 25.0%
GAGAAGAATGATGCAAATTA+TGG - chr5_4:43982116-43982135 None:intergenic 30.0%
GATTATAGATTAGATATGGG+AGG - chr5_4:43982158-43982177 None:intergenic 30.0%
GAGAAAGATAGAAGAACAAT+AGG + chr5_4:43982223-43982242 Msa0852750:five_prime_UTR 30.0%
GTACAAGATCTATAAGGAAA+AGG - chr5_4:43982357-43982376 None:intergenic 30.0%
ACAGACAAAAAAAGTCAGAA+AGG - chr5_4:43982543-43982562 None:intergenic 30.0%
TGTCTTAATTAGTGCATGTT+TGG + chr5_4:43982808-43982827 Msa0852750:intron 30.0%
TAAATTGTACCAAATCACTG+AGG + chr5_4:43982883-43982902 Msa0852750:intron 30.0%
GAACTAGTAATTTATGGAAC+TGG - chr5_4:43983151-43983170 None:intergenic 30.0%
GTTCCATAAATTACTAGTTC+AGG + chr5_4:43983151-43983170 Msa0852750:intron 30.0%
TTGCCTGAACTAGTAATTTA+TGG - chr5_4:43983157-43983176 None:intergenic 30.0%
CCGGTAATAATTTGAGAAAA+TGG + chr5_4:43983248-43983267 Msa0852750:intron 30.0%
AAATAACTGATATACGCATG+TGG - chr5_4:43983290-43983309 None:intergenic 30.0%
GTTAACTTATTATTCTCCCT+TGG + chr5_4:43983335-43983354 Msa0852750:intron 30.0%
AATATTGAAGCTGAACTATG+TGG - chr5_4:43983429-43983448 None:intergenic 30.0%
TGTTAGTCATTACTAATCGT+GGG + chr5_4:43983480-43983499 Msa0852750:intron 30.0%
!!! TTTGTTTTTGCTTGGAAGAT+CGG - chr5_4:43984002-43984021 None:intergenic 30.0%
AAAACATGAAGCTATACCTT+AGG - chr5_4:43984112-43984131 None:intergenic 30.0%
TTCTCTGAATGAATTGTTTG+TGG + chr5_4:43984200-43984219 Msa0852750:intron 30.0%
! GTTTGTGGAAATTTGTTTGA+CGG + chr5_4:43984215-43984234 Msa0852750:intron 30.0%
! TAGTCAAATGATTCTTTTGG+CGG + chr5_4:43984407-43984426 Msa0852750:intron 30.0%
TACAGACACGAAACAATAAA+GGG - chr5_4:43984449-43984468 None:intergenic 30.0%
ATACAGACACGAAACAATAA+AGG - chr5_4:43984450-43984469 None:intergenic 30.0%
GTTCAAGCTATTGATAAATC+AGG - chr5_4:43984497-43984516 None:intergenic 30.0%
TAGGGAAATGAAATGTTAAG+TGG + chr5_4:43984808-43984827 Msa0852750:intron 30.0%
TGTATAATTGTTCTTGGGTT+TGG + chr5_4:43984873-43984892 Msa0852750:intron 30.0%
TTTAGTGAAATGAGTTACAC+AGG + chr5_4:43985051-43985070 Msa0852750:intron 30.0%
TGATTTCAACATAGATGAGA+TGG + chr5_4:43985170-43985189 Msa0852750:CDS 30.0%
TTTCAAAAAACTCTTCAGAG+TGG - chr5_4:43985242-43985261 None:intergenic 30.0%
!!! GAAGAGTTTTTTGAAAATGG+TGG + chr5_4:43985246-43985265 Msa0852750:CDS 30.0%
! CCCTTTGTTAGCTATAATTT+TGG + chr5_4:43985365-43985384 Msa0852750:intron 30.0%
GCCAAAATTATAGCTAACAA+AGG - chr5_4:43985369-43985388 None:intergenic 30.0%
AAACTTGAACTAATTGCTAC+TGG + chr5_4:43985487-43985506 Msa0852750:intron 30.0%
! AGAGAACATTTAGTTTCCTT+TGG + chr5_4:43985978-43985997 Msa0852750:intron 30.0%
! GAGAACATTTAGTTTCCTTT+GGG + chr5_4:43985979-43985998 Msa0852750:intron 30.0%
! AGAACATTTAGTTTCCTTTG+GGG + chr5_4:43985980-43985999 Msa0852750:intron 30.0%
! CAATCAAACCTTTCATTTTC+TGG + chr5_4:43986183-43986202 Msa0852750:CDS 30.0%
CAGATTGAATAGAATTCTCA+GGG - chr5_4:43986296-43986315 None:intergenic 30.0%
! CGTTGATATAATTTTACCTG+TGG + chr5_4:43986407-43986426 Msa0852750:intron 30.0%
!! ATCTGCTCATGTTTTTGTTA+TGG + chr5_4:43986456-43986475 Msa0852750:intron 30.0%
TGGTGTAAAACAATGAGAAT+AGG - chr5_4:43986535-43986554 None:intergenic 30.0%
! TAAAGCTAGGTCCATTTTAA+TGG + chr5_4:43986617-43986636 Msa0852750:intron 30.0%
CATCTGGAAAACCATTAAAA+TGG - chr5_4:43986631-43986650 None:intergenic 30.0%
! TTCACAAAGTGTTATGGTAA+TGG - chr5_4:43986805-43986824 None:intergenic 30.0%
! TGGAATAAAAAGGTATAGCA+TGG - chr5_4:43986865-43986884 None:intergenic 30.0%
CTGAAAACTGTGGAATAAAA+AGG - chr5_4:43986875-43986894 None:intergenic 30.0%
TTCAGTTCACTGAAATGATT+AGG + chr5_4:43986890-43986909 Msa0852750:intron 30.0%
GCGGTAGTAATAAATAGAAT+AGG + chr5_4:43986912-43986931 Msa0852750:intron 30.0%
GTAATAGTTATTCTTCTCAG+TGG - chr5_4:43987133-43987152 None:intergenic 30.0%
AACGCATATTATGAGATAGA+GGG - chr5_4:43987157-43987176 None:intergenic 30.0%
AAACGCATATTATGAGATAG+AGG - chr5_4:43987158-43987177 None:intergenic 30.0%
CTCATATTATGTGTCTCATT+TGG - chr5_4:43987391-43987410 None:intergenic 30.0%
CTTTCTTATCAAACCTGAAA+TGG - chr5_4:43987502-43987521 None:intergenic 30.0%
AGAAAGTAAGATATGCTTCT+CGG + chr5_4:43987516-43987535 Msa0852750:CDS 30.0%
! TTCTTTCCTTTTGTTGAACA+TGG - chr5_4:43987656-43987675 None:intergenic 30.0%
AAAGCCATAATCCAATGAAT+TGG + chr5_4:43987794-43987813 Msa0852750:three_prime_UTR 30.0%
!!! GAATTTTGATTCCGTTTATG+TGG + chr5_4:43987921-43987940 Msa0852750:three_prime_UTR 30.0%
CTGTGTTTATTGAGATGGAT+TGG - chr5_4:43982194-43982213 None:intergenic 35.0%
TTCTGCTGTGTTTATTGAGA+TGG - chr5_4:43982199-43982218 None:intergenic 35.0%
! CAGAGAGTACAAGATCTATA+AGG - chr5_4:43982363-43982382 None:intergenic 35.0%
ACTGAGGCATAAAGTGATTA+TGG + chr5_4:43982899-43982918 Msa0852750:intron 35.0%
GAAAATTCAACTTCTGCCAA+GGG - chr5_4:43983354-43983373 None:intergenic 35.0%
TGAAAATTCAACTTCTGCCA+AGG - chr5_4:43983355-43983374 None:intergenic 35.0%
ATTGTGCTTCCTTTATCACA+TGG + chr5_4:43983382-43983401 Msa0852750:intron 35.0%
GTTGTGAAACCATGTGATAA+AGG - chr5_4:43983394-43983413 None:intergenic 35.0%
GTGTTAGTCATTACTAATCG+TGG + chr5_4:43983479-43983498 Msa0852750:intron 35.0%
! GGTTCTTTATGCGATTTTTG+CGG + chr5_4:43983548-43983567 Msa0852750:CDS 35.0%
ATTTACAACCTGCATATGTG+AGG + chr5_4:43983699-43983718 Msa0852750:CDS 35.0%
CAATCAATCAATTGCTTCTC+TGG + chr5_4:43983806-43983825 Msa0852750:CDS 35.0%
GAAGCATGTGAACATAAACT+CGG + chr5_4:43983893-43983912 Msa0852750:CDS 35.0%
CTTCCAAGCAAAAACAAATC+TGG + chr5_4:43984004-43984023 Msa0852750:CDS 35.0%
ATAAGTTCATTGGAAGATCC+GGG - chr5_4:43984088-43984107 None:intergenic 35.0%
CATAAGTTCATTGGAAGATC+CGG - chr5_4:43984089-43984108 None:intergenic 35.0%
TTCCAATGAACTTATGCCTA+AGG + chr5_4:43984093-43984112 Msa0852750:CDS 35.0%
TACCTTAGGCATAAGTTCAT+TGG - chr5_4:43984098-43984117 None:intergenic 35.0%
CATATTGCAGTTACAAGACT+AGG - chr5_4:43984144-43984163 None:intergenic 35.0%
ACAGACACGAAACAATAAAG+GGG - chr5_4:43984448-43984467 None:intergenic 35.0%
AATAGCTTGAACTTCAAAGC+AGG + chr5_4:43984505-43984524 Msa0852750:intron 35.0%
TGACACATCATCTCAAATTG+TGG + chr5_4:43984768-43984787 Msa0852750:intron 35.0%
TCATCTCAAATTGTGGTCTT+TGG + chr5_4:43984775-43984794 Msa0852750:intron 35.0%
CATCTCAAATTGTGGTCTTT+GGG + chr5_4:43984776-43984795 Msa0852750:intron 35.0%
!! GTCTTTGGGTTTTGATGATA+GGG + chr5_4:43984790-43984809 Msa0852750:intron 35.0%
ATACATGTACATAGGTGACA+AGG - chr5_4:43984858-43984877 None:intergenic 35.0%
TTATCATCTTCACATAGTGC+AGG - chr5_4:43985141-43985160 None:intergenic 35.0%
TGTGAAGATGATAAGTTGCT+TGG + chr5_4:43985147-43985166 Msa0852750:CDS 35.0%
CTCAGTTATGTGACATGTAA+CGG - chr5_4:43985414-43985433 None:intergenic 35.0%
TATCACTATTGCACCAATGT+TGG - chr5_4:43985457-43985476 None:intergenic 35.0%
TTCATAGTGTTGTCCAATAC+CGG + chr5_4:43985510-43985529 Msa0852750:intron 35.0%
TTGTTCTGCTATACGCTATT+TGG + chr5_4:43985567-43985586 Msa0852750:intron 35.0%
CTATAGACTGATCTTCTAGT+CGG + chr5_4:43985739-43985758 Msa0852750:intron 35.0%
TGTTAACGCCAGAAAATGAA+AGG - chr5_4:43986194-43986213 None:intergenic 35.0%
GTTAACAAAGATACTAGTGC+TGG + chr5_4:43986207-43986226 Msa0852750:CDS 35.0%
GCAGATTGAATAGAATTCTC+AGG - chr5_4:43986297-43986316 None:intergenic 35.0%
! TTTGATAGAGTTGATCGAGT+AGG - chr5_4:43986574-43986593 None:intergenic 35.0%
AGAAAACCTTAGACAACATC+TGG - chr5_4:43986647-43986666 None:intergenic 35.0%
CAATAGAGACATTAGAGAGA+AGG - chr5_4:43986691-43986710 None:intergenic 35.0%
! AGTTCGTTCACAAAGTGTTA+TGG - chr5_4:43986811-43986830 None:intergenic 35.0%
TTTCAGTGAACTGAAAACTG+TGG - chr5_4:43986885-43986904 None:intergenic 35.0%
AGTTCACTGAAATGATTAGG+CGG + chr5_4:43986893-43986912 Msa0852750:intron 35.0%
TCAAAGCTTGGTTGCTATAT+GGG + chr5_4:43987453-43987472 Msa0852750:intron 35.0%
ACTGCCAATTCATTGGATTA+TGG - chr5_4:43987801-43987820 None:intergenic 35.0%
ATCCAATGAATTGGCAGTAT+AGG + chr5_4:43987803-43987822 Msa0852750:three_prime_UTR 35.0%
GTTTAGCTGACATCACAATT+TGG - chr5_4:43987867-43987886 None:intergenic 35.0%
! ACCATGTTTTGCCACATAAA+CGG - chr5_4:43987935-43987954 None:intergenic 35.0%
ACAATTCATTGTCAGTCCTT+TGG + chr5_4:43987975-43987994 Msa0852750:three_prime_UTR 35.0%
TTTGGCCACAATATTGTTCA+CGG + chr5_4:43987993-43988012 Msa0852750:three_prime_UTR 35.0%
TAGATTAGATATGGGAGGGT+TGG - chr5_4:43982153-43982172 None:intergenic 40.0%
TCTTATGGGAGCTTGAGATA+AGG + chr5_4:43982477-43982496 Msa0852750:five_prime_UTR 40.0%
CACTTTATGCCTCAGTGATT+TGG - chr5_4:43982895-43982914 None:intergenic 40.0%
AGCGAAGTGTGGTTTAAAGA+TGG + chr5_4:43983526-43983545 Msa0852750:exon 40.0%
GCGAAGTGTGGTTTAAAGAT+GGG + chr5_4:43983527-43983546 Msa0852750:exon 40.0%
CAAACATAAGGAAGCAGCAT+CGG - chr5_4:43983603-43983622 None:intergenic 40.0%
TCGATCACACGACAAACATA+AGG - chr5_4:43983615-43983634 None:intergenic 40.0%
CACTTTGTCAGAACTGTGAT+TGG + chr5_4:43983741-43983760 Msa0852750:CDS 40.0%
CTTCCGAGCTTTCTTCAATA+TGG + chr5_4:43983840-43983859 Msa0852750:CDS 40.0%
GAAGGGATGTCTGAGAAAAA+GGG - chr5_4:43983866-43983885 None:intergenic 40.0%
AGAAGGGATGTCTGAGAAAA+AGG - chr5_4:43983867-43983886 None:intergenic 40.0%
TTTCTCAGACATCCCTTCTA+CGG + chr5_4:43983868-43983887 Msa0852750:CDS 40.0%
!!! ACGCCAGATTTGTTTTTGCT+TGG - chr5_4:43984010-43984029 None:intergenic 40.0%
GCAATATGTTTGTCGCACAA+CGG + chr5_4:43984156-43984175 Msa0852750:intron 40.0%
ACAATAAAGGGGCAAAACCA+AGG - chr5_4:43984437-43984456 None:intergenic 40.0%
TTGAACTTCAAAGCAGGAAC+AGG + chr5_4:43984511-43984530 Msa0852750:intron 40.0%
CTTCATTTCAACGTTCCAAG+AGG + chr5_4:43984717-43984736 Msa0852750:intron 40.0%
!! GGTCTTTGGGTTTTGATGAT+AGG + chr5_4:43984789-43984808 Msa0852750:intron 40.0%
! GCAAAGAAACAATAGCCTTG+CGG + chr5_4:43984959-43984978 Msa0852750:intron 40.0%
ATGTCGTCGTTGTTAACAAG+TGG - chr5_4:43985002-43985021 None:intergenic 40.0%
GCTGGTGATTCAAATTGTCA+AGG + chr5_4:43985309-43985328 Msa0852750:CDS 40.0%
ATTTCGCTACACTATTGCAC+CGG - chr5_4:43985532-43985551 None:intergenic 40.0%
TGCACAGCTCTATAGGTAAT+GGG - chr5_4:43985688-43985707 None:intergenic 40.0%
TTGATTTCTCTACAATGCCC+AGG - chr5_4:43985711-43985730 None:intergenic 40.0%
CTATAAAACTAGGACCCCAA+AGG - chr5_4:43985997-43986016 None:intergenic 40.0%
!!! CTTTGGGGTCCTAGTTTTAT+AGG + chr5_4:43985995-43986014 Msa0852750:intron 40.0%
ACTTCTTCAATGCTTCTCAC+AGG + chr5_4:43986249-43986268 Msa0852750:CDS 40.0%
CTTCTTCAATGCTTCTCACA+GGG + chr5_4:43986250-43986269 Msa0852750:CDS 40.0%
TTCTTCAATGCTTCTCACAG+GGG + chr5_4:43986251-43986270 Msa0852750:CDS 40.0%
TGAATAGAATTCTCAGGGCA+AGG - chr5_4:43986291-43986310 None:intergenic 40.0%
CAATGCTGTCATGCGTTATA+AGG + chr5_4:43986326-43986345 Msa0852750:CDS 40.0%
!!! GTTACTTTTACGTCAACCAC+AGG - chr5_4:43986426-43986445 None:intergenic 40.0%
! GGTTTTCCAGATGTTGTCTA+AGG + chr5_4:43986638-43986657 Msa0852750:intron 40.0%
!! AGTGTTATGGTAATGGCTGA+GGG - chr5_4:43986798-43986817 None:intergenic 40.0%
!! AAGTGTTATGGTAATGGCTG+AGG - chr5_4:43986799-43986818 None:intergenic 40.0%
ACTACTTGTGGAAATGGTGA+TGG + chr5_4:43986968-43986987 Msa0852750:intron 40.0%
ATAATGCGATCAGCCAAAGA+GGG + chr5_4:43987078-43987097 Msa0852750:intron 40.0%
!! ATAAGGGTACCATTGGAGAA+AGG - chr5_4:43987241-43987260 None:intergenic 40.0%
CTCAAAGCTTGGTTGCTATA+TGG + chr5_4:43987452-43987471 Msa0852750:intron 40.0%
! GTTACGATGAATGCCATTTC+AGG + chr5_4:43987486-43987505 Msa0852750:intron 40.0%
AGTAAGATATGCTTCTCGGA+AGG + chr5_4:43987520-43987539 Msa0852750:CDS 40.0%
!! AGCTTCTGGTTTGACTCAAA+GGG - chr5_4:43987613-43987632 None:intergenic 40.0%
CAAACCGTCTGATTTAACAC+AGG + chr5_4:43987735-43987754 Msa0852750:three_prime_UTR 40.0%
AGCCTATACTGCCAATTCAT+TGG - chr5_4:43987808-43987827 None:intergenic 40.0%
ATGAATTGGCAGTATAGGCT+TGG + chr5_4:43987808-43987827 Msa0852750:three_prime_UTR 40.0%
CACAATTTGGATATCCTTCG+CGG - chr5_4:43987854-43987873 None:intergenic 40.0%
TTCAAGGCACATTGCTTGAA+GGG - chr5_4:43987904-43987923 None:intergenic 40.0%
ATTCAAGGCACATTGCTTGA+AGG - chr5_4:43987905-43987924 None:intergenic 40.0%
TCCGTTTATGTGGCAAAACA+TGG + chr5_4:43987931-43987950 Msa0852750:three_prime_UTR 40.0%
GTGAACAATATTGTGGCCAA+AGG - chr5_4:43987994-43988013 None:intergenic 40.0%
GCAAACCGTGAACAATATTG+TGG - chr5_4:43988001-43988020 None:intergenic 40.0%
TCTGGCAGTTCTACATACAT+GGG - chr5_4:43988055-43988074 None:intergenic 40.0%
TTGTCCTGCATACATGTAGA+TGG + chr5_4:43988114-43988133 Msa0852750:three_prime_UTR 40.0%
AACTCCATCTACATGTATGC+AGG - chr5_4:43988121-43988140 None:intergenic 40.0%
AGGGTCAGTGTTTCTTCTCT+AGG + chr5_4:43982243-43982262 Msa0852750:intron 45.0%
GGGTCAGTGTTTCTTCTCTA+GGG + chr5_4:43982244-43982263 Msa0852750:intron 45.0%
GGGATCATCAGTATGGAAAC+AGG - chr5_4:43983130-43983149 None:intergenic 45.0%
TGGAACTGGGATCATCAGTA+TGG - chr5_4:43983137-43983156 None:intergenic 45.0%
TTAAAGGAGCAAGCGAAGTG+TGG + chr5_4:43983515-43983534 Msa0852750:intron 45.0%
CAAGAACACTTGTATGCGAG+AGG + chr5_4:43983672-43983691 Msa0852750:CDS 45.0%
TCAACACACCTCACATATGC+AGG - chr5_4:43983710-43983729 None:intergenic 45.0%
! AACTGTGATTGGTCAGCTCA+TGG + chr5_4:43983752-43983771 Msa0852750:CDS 45.0%
GTGTGTTGAAGAGGATGGAT+TGG - chr5_4:43983780-43983799 None:intergenic 45.0%
CTCTTGTGTGTTGAAGAGGA+TGG - chr5_4:43983785-43983804 None:intergenic 45.0%
CATCCTCTTCAACACACAAG+AGG + chr5_4:43983783-43983802 Msa0852750:CDS 45.0%
TTGCCTCTTGTGTGTTGAAG+AGG - chr5_4:43983789-43983808 None:intergenic 45.0%
GGGCCATATTGAAGAAAGCT+CGG - chr5_4:43983846-43983865 None:intergenic 45.0%
TTCTCAGACATCCCTTCTAC+GGG + chr5_4:43983869-43983888 Msa0852750:CDS 45.0%
CTGGTTCAAAATACGGGGTT+TGG - chr5_4:43984062-43984081 None:intergenic 45.0%
!! CAAACCCCGTATTTTGAACC+AGG + chr5_4:43984060-43984079 Msa0852750:CDS 45.0%
! ATTCTTTTGGCGGTTTGCCT+TGG + chr5_4:43984417-43984436 Msa0852750:intron 45.0%
TACCCTCAGTCCATGTGATT+AGG + chr5_4:43984558-43984577 Msa0852750:intron 45.0%
! CTCCTAATCACATGGACTGA+GGG - chr5_4:43984563-43984582 None:intergenic 45.0%
! TCTCCTAATCACATGGACTG+AGG - chr5_4:43984564-43984583 None:intergenic 45.0%
TGGCTACTCTCCTAATCACA+TGG - chr5_4:43984571-43984590 None:intergenic 45.0%
CACACGAAAGAGAATCCTCT+TGG - chr5_4:43984735-43984754 None:intergenic 45.0%
GGATTCTCTTTCGTGTGTGA+CGG + chr5_4:43984738-43984757 Msa0852750:intron 45.0%
TTGCGGCTTACATGCATTGA+CGG + chr5_4:43984976-43984995 Msa0852750:intron 45.0%
GTTACTATGTCCCAGCAGAA+AGG + chr5_4:43985113-43985132 Msa0852750:intron 45.0%
AAAGACATGTCTGCTAGTGC+TGG + chr5_4:43985291-43985310 Msa0852750:CDS 45.0%
TCCTCAGTGTTGTCCAACAT+TGG + chr5_4:43985441-43985460 Msa0852750:intron 45.0%
ACCAATGTTGGACAACACTG+AGG - chr5_4:43985445-43985464 None:intergenic 45.0%
! CTACACTATTGCACCGGTAT+TGG - chr5_4:43985526-43985545 None:intergenic 45.0%
GTGCACAGCTCTATAGGTAA+TGG - chr5_4:43985689-43985708 None:intergenic 45.0%
! TCTTGTTATCTCCCGATCTC+TGG + chr5_4:43985784-43985803 Msa0852750:intron 45.0%
TGCTCACTATCACCAGAGAT+CGG - chr5_4:43985799-43985818 None:intergenic 45.0%
!! GTTTTTAGGGGTCATCAGCA+AGG + chr5_4:43986064-43986083 Msa0852750:intron 45.0%
!! GTGTTATGGTAATGGCTGAG+GGG - chr5_4:43986797-43986816 None:intergenic 45.0%
! GGTGATGGTTCTCAGAATTC+AGG + chr5_4:43986983-43987002 Msa0852750:intron 45.0%
CATAATGCGATCAGCCAAAG+AGG + chr5_4:43987077-43987096 Msa0852750:intron 45.0%
ATATGCTTCTCGGAAGGCAA+GGG + chr5_4:43987526-43987545 Msa0852750:CDS 45.0%
GATGTCAGAAAACGCGTGAA+AGG + chr5_4:43987551-43987570 Msa0852750:CDS 45.0%
!! CAGCTTCTGGTTTGACTCAA+AGG - chr5_4:43987614-43987633 None:intergenic 45.0%
AGTGTAAACTCAGCAGCTTC+TGG - chr5_4:43987627-43987646 None:intergenic 45.0%
GGCTCCTGTGTTAAATCAGA+CGG - chr5_4:43987742-43987761 None:intergenic 45.0%
ATTGGCAGTATAGGCTTGGA+AGG + chr5_4:43987812-43987831 Msa0852750:three_prime_UTR 45.0%
TTGGCAGTATAGGCTTGGAA+GGG + chr5_4:43987813-43987832 Msa0852750:three_prime_UTR 45.0%
TCAAGGCACATTGCTTGAAG+GGG - chr5_4:43987903-43987922 None:intergenic 45.0%
CTCTGGCAGTTCTACATACA+TGG - chr5_4:43988056-43988075 None:intergenic 45.0%
GTATGTAGAACTGCCAGAGA+TGG + chr5_4:43988057-43988076 Msa0852750:three_prime_UTR 45.0%
GACACTTATCATGCCATCTC+TGG - chr5_4:43988073-43988092 None:intergenic 45.0%
!! AGATATGGGAGGGTTGGTGT+AGG - chr5_4:43982147-43982166 None:intergenic 50.0%
TGACACTGACATGTCGACAC+CGG + chr5_4:43983229-43983248 Msa0852750:intron 50.0%
! ATAAGGAAGCAGCATCGGAG+CGG - chr5_4:43983598-43983617 None:intergenic 50.0%
TTGCTTCTCTGGCTGTCCTT+CGG + chr5_4:43983817-43983836 Msa0852750:CDS 50.0%
CACATGCTTCACCCGTAGAA+GGG - chr5_4:43983883-43983902 None:intergenic 50.0%
TCACATGCTTCACCCGTAGA+AGG - chr5_4:43983884-43983903 None:intergenic 50.0%
AGAACAGTGACAACAGTGCC+AGG + chr5_4:43983933-43983952 Msa0852750:CDS 50.0%
GAACAGTGACAACAGTGCCA+GGG + chr5_4:43983934-43983953 Msa0852750:CDS 50.0%
GACACACTCTTGCTTTCTGG+AGG - chr5_4:43983962-43983981 None:intergenic 50.0%
CCAGACACACTCTTGCTTTC+TGG - chr5_4:43983965-43983984 None:intergenic 50.0%
! CCAGAAAGCAAGAGTGTGTC+TGG + chr5_4:43983962-43983981 Msa0852750:CDS 50.0%
! TGTGTCTGGTTCAGCTCAAG+TGG + chr5_4:43983976-43983995 Msa0852750:CDS 50.0%
! TGCAGCTTGATGACAGTCGA+TGG + chr5_4:43984921-43984940 Msa0852750:intron 50.0%
GTCAATGCATGTAAGCCGCA+AGG - chr5_4:43984977-43984996 None:intergenic 50.0%
GGCTATAGCACTTAGCGTAG+TGG + chr5_4:43985611-43985630 Msa0852750:intron 50.0%
TACCTATAGAGCTGTGCACC+TGG + chr5_4:43985690-43985709 Msa0852750:intron 50.0%
ACCTATAGAGCTGTGCACCT+GGG + chr5_4:43985691-43985710 Msa0852750:intron 50.0%
GCTCACTATCACCAGAGATC+GGG - chr5_4:43985798-43985817 None:intergenic 50.0%
CAGCATTGCTGCATTCTGGT+TGG - chr5_4:43986104-43986123 None:intergenic 50.0%
GATGCAGCATTGCTGCATTC+TGG - chr5_4:43986108-43986127 None:intergenic 50.0%
GCTGGTGACTATCAAGAGTG+TGG + chr5_4:43986225-43986244 Msa0852750:CDS 50.0%
GATATGCTTCTCGGAAGGCA+AGG + chr5_4:43987525-43987544 Msa0852750:CDS 50.0%
TCAGAAAACGCGTGAAAGGC+CGG + chr5_4:43987555-43987574 Msa0852750:CDS 50.0%
! TTTCCCCAGCTTTGACGAAC+CGG - chr5_4:43987577-43987596 None:intergenic 50.0%
TTGGATATCCTTCGCGGTGA+AGG - chr5_4:43987848-43987867 None:intergenic 50.0%
! GCGATTTTTGCGGAGACCAG+AGG + chr5_4:43983558-43983577 Msa0852750:CDS 55.0%
TTGCGGAGACCAGAGGTCTT+TGG + chr5_4:43983565-43983584 Msa0852750:CDS 55.0%
GGCAGTACACCAAAGACCTC+TGG - chr5_4:43983577-43983596 None:intergenic 55.0%
GAAGAAAGCTCGGAAGCCGA+AGG - chr5_4:43983836-43983855 None:intergenic 55.0%
! CTTGCTTTCTGGAGGAACCC+TGG - chr5_4:43983954-43983973 None:intergenic 55.0%
GGCGCCTGGTTCAAAATACG+GGG - chr5_4:43984067-43984086 None:intergenic 55.0%
GGGCGCCTGGTTCAAAATAC+GGG - chr5_4:43984068-43984087 None:intergenic 55.0%
CGGGCGCCTGGTTCAAAATA+CGG - chr5_4:43984069-43984088 None:intergenic 55.0%
!! CGTATTTTGAACCAGGCGCC+CGG + chr5_4:43984067-43984086 Msa0852750:CDS 55.0%
AGTGCAGGAGCCTTTCTGCT+GGG - chr5_4:43985126-43985145 None:intergenic 55.0%
TAGTGCAGGAGCCTTTCTGC+TGG - chr5_4:43985127-43985146 None:intergenic 55.0%
TTCTCAGGGCAAGGACACCA+GGG - chr5_4:43986282-43986301 None:intergenic 55.0%
ATTCTCAGGGCAAGGACACC+AGG - chr5_4:43986283-43986302 None:intergenic 55.0%
!! AAAGGCCGGTTCGTCAAAGC+TGG + chr5_4:43987569-43987588 Msa0852750:CDS 55.0%
!! AAGGCCGGTTCGTCAAAGCT+GGG + chr5_4:43987570-43987589 Msa0852750:CDS 55.0%
CGGGGTTTGGCACTTGACTC+AGG - chr5_4:43984049-43984068 None:intergenic 60.0%
!! TCAAGGCGCTGTTGCTGCTG+AGG + chr5_4:43985326-43985345 Msa0852750:CDS 60.0%
GCCCAGGTGCACAGCTCTAT+AGG - chr5_4:43985695-43985714 None:intergenic 60.0%
!! AGGCCGGTTCGTCAAAGCTG+GGG + chr5_4:43987571-43987590 Msa0852750:CDS 60.0%
CATTGGAAGATCCGGGCGCC+TGG - chr5_4:43984081-43984100 None:intergenic 65.0%
TTCTCACAGGGGAGCCTCCC+TGG + chr5_4:43986262-43986281 Msa0852750:CDS 65.0%
TCAGGGCAAGGACACCAGGG+AGG - chr5_4:43986279-43986298 None:intergenic 65.0%
ACACGCGTCCTTCACCGCGA+AGG + chr5_4:43987837-43987856 Msa0852750:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 43982107 43988173 43982107 ID=Msa0852750;Name=Msa0852750
chr5_4 mRNA 43982107 43988173 43982107 ID=Msa0852750-mRNA-1;Parent=Msa0852750;Name=Msa0852750-mRNA-1;_AED=0.13;_eAED=0.13;_QI=212|1|1|1|0.6|0.5|6|536|409
chr5_4 exon 43982107 43982245 43982107 ID=Msa0852750-mRNA-1:exon:13902;Parent=Msa0852750-mRNA-1
chr5_4 exon 43982475 43982523 43982475 ID=Msa0852750-mRNA-1:exon:13903;Parent=Msa0852750-mRNA-1
chr5_4 exon 43983521 43984114 43983521 ID=Msa0852750-mRNA-1:exon:13904;Parent=Msa0852750-mRNA-1
chr5_4 exon 43985114 43985347 43985114 ID=Msa0852750-mRNA-1:exon:13905;Parent=Msa0852750-mRNA-1
chr5_4 exon 43986072 43986367 43986072 ID=Msa0852750-mRNA-1:exon:13906;Parent=Msa0852750-mRNA-1
chr5_4 exon 43987508 43988173 43987508 ID=Msa0852750-mRNA-1:exon:13907;Parent=Msa0852750-mRNA-1
chr5_4 five_prime_UTR 43982107 43982245 43982107 ID=Msa0852750-mRNA-1:five_prime_utr;Parent=Msa0852750-mRNA-1
chr5_4 five_prime_UTR 43982475 43982523 43982475 ID=Msa0852750-mRNA-1:five_prime_utr;Parent=Msa0852750-mRNA-1
chr5_4 five_prime_UTR 43983521 43983544 43983521 ID=Msa0852750-mRNA-1:five_prime_utr;Parent=Msa0852750-mRNA-1
chr5_4 CDS 43983545 43984114 43983545 ID=Msa0852750-mRNA-1:cds;Parent=Msa0852750-mRNA-1
chr5_4 CDS 43985114 43985347 43985114 ID=Msa0852750-mRNA-1:cds;Parent=Msa0852750-mRNA-1
chr5_4 CDS 43986072 43986367 43986072 ID=Msa0852750-mRNA-1:cds;Parent=Msa0852750-mRNA-1
chr5_4 CDS 43987508 43987637 43987508 ID=Msa0852750-mRNA-1:cds;Parent=Msa0852750-mRNA-1
chr5_4 three_prime_UTR 43987638 43988173 43987638 ID=Msa0852750-mRNA-1:three_prime_utr;Parent=Msa0852750-mRNA-1
Gene Sequence

>Msa0852750

ATGGGTTCTTTATGCGATTTTTGCGGAGACCAGAGGTCTTTGGTGTACTGCCGCTCCGATGCTGCTTCCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAACGAACTTTCTAAGCGTCATTCAAGAACACTTGTATGCGAGAGGTGTAATTTACAACCTGCATATGTGAGGTGTGTTGAAGAGAAAGTTTCACTTTGTCAGAACTGTGATTGGTCAGCTCATGGTACCAATCCATCCTCTTCAACACACAAGAGGCAATCAATCAATTGCTTCTCTGGCTGTCCTTCGGCTTCCGAGCTTTCTTCAATATGGCCCTTTTTCTCAGACATCCCTTCTACGGGTGAAGCATGTGAACATAAACTCGGTTTGATGAGCATTAACGAGAACAGTGACAACAGTGCCAGGGTTCCTCCAGAAAGCAAGAGTGTGTCTGGTTCAGCTCAAGTGGCCGATCTTCCAAGCAAAAACAAATCTGGCGTCGACACATCTTCAATACCTGAGTCAAGTGCCAAACCCCGTATTTTGAACCAGGCGCCCGGATCTTCCAATGAACTTATGCCTAAGTTACTATGTCCCAGCAGAAAGGCTCCTGCACTATGTGAAGATGATAAGTTGCTTGGTGATTTCAACATAGATGAGATGGATTTTGAACTTGAGAACTATACGGAACTTTTTGACTTTGCTCTCAACCACTCTGAAGAGTTTTTTGAAAATGGTGGTATTGATAGCTTATTTGAGAGAAAAGACATGTCTGCTAGTGCTGGTGATTCAAATTGTCAAGGCGCTGTTGCTGCTGAGGGGTCATCAGCAAGGTTTGTTAGTGCTATCCAACCAGAATGCAGCAATGCTGCATCTGCAGATTCAATATTAAGTACTAAAACTGAACCAGTTATTTATTTTACGGAAAGGCAATCAAACCTTTCATTTTCTGGCGTTAACAAAGATACTAGTGCTGGTGACTATCAAGAGTGTGGTACTTCTTCAATGCTTCTCACAGGGGAGCCTCCCTGGTGTCCTTGCCCTGAGAATTCTATTCAATCTGCTAATCGCAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGAATCGAAAGTTTGATAAGAAAGTAAGATATGCTTCTCGGAAGGCAAGGGCTGATGTCAGAAAACGCGTGAAAGGCCGGTTCGTCAAAGCTGGGGAAACATACGACTACGACCCTTTGAGTCAAACCAGAAGCTGCTGA
Protein sequence

>Msa0852750

MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANELSKRHSRTLVCERCNLQPAYVRCVEEKVSLCQNCDWSAHGTNPSSSTHKRQSINCFSGCPSASELSSIWPFFSDIPSTGEACEHKLGLMSINENSDNSARVPPESKSVSGSAQVADLPSKNKSGVDTSSIPESSAKPRILNQAPGSSNELMPKLLCPSRKAPALCEDDKLLGDFNIDEMDFELENYTELFDFALNHSEEFFENGGIDSLFERKDMSASAGDSNCQGAVAAEGSSARFVSAIQPECSNAASADSILSTKTEPVIYFTERQSNLSFSGVNKDTSAGDYQECGTSSMLLTGEPPWCPCPENSIQSANRSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETYDYDPLSQTRSC*